AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1099370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1099370 MtrunA17_Chr7g0218571 95.980 199 8 0 4 202 340 538 4.19e-145 414
Msa1099370 MtrunA17_Chr6g0454101 84.925 199 30 0 4 202 335 533 9.58e-121 352
Msa1099370 MtrunA17_Chr2g0319311 65.464 194 67 0 7 200 347 540 8.41e-97 291
Msa1099370 MtrunA17_Chr4g0076011 63.918 194 70 0 7 200 279 472 1.44e-95 286
Msa1099370 MtrunA17_Chr3g0097091 51.759 199 93 1 4 199 330 528 5.12e-73 229
Msa1099370 MtrunA17_Chr7g0246371 50.505 198 91 3 4 201 474 664 6.03e-70 224
Msa1099370 MtrunA17_Chr8g0351091 49.495 198 93 3 4 201 422 612 1.92e-69 222
Msa1099370 MtrunA17_Chr2g0283461 50.769 195 88 3 4 198 345 531 2.43e-69 220
Msa1099370 MtrunA17_Chr7g0235161 49.744 195 91 2 4 198 370 557 9.12e-69 219
Msa1099370 MtrunA17_Chr2g0290961 51.531 196 88 3 4 199 477 665 1.94e-68 221
Msa1099370 MtrunA17_Chr8g0383241 48.990 198 94 2 4 201 301 491 3.28e-68 216
Msa1099370 MtrunA17_Chr6g0456071 48.718 195 93 2 4 198 365 552 1.80e-63 205
Msa1099370 MtrunA17_Chr4g0061711 47.938 194 94 3 4 197 346 532 2.35e-63 204
Msa1099370 MtrunA17_Chr3g0138381 45.455 198 101 2 4 201 475 665 1.05e-62 205
Msa1099370 MtrunA17_Chr2g0308241 46.429 196 98 3 4 199 346 534 1.65e-60 197
Msa1099370 MtrunA17_Chr2g0277591 42.051 195 81 5 4 198 345 507 1.07e-48 166
Msa1099370 MtrunA17_Chr7g0260711 37.374 198 118 3 4 200 461 653 4.62e-46 160
Msa1099370 MtrunA17_Chr1g0184751 38.071 197 120 1 4 200 404 598 5.28e-43 151
Msa1099370 MtrunA17_Chr4g0076331 40.116 172 67 3 31 200 36 173 5.17e-40 134
Msa1099370 MtrunA17_Chr7g0245621 35.519 183 92 5 24 199 480 643 1.28e-30 117
Msa1099370 MtrunA17_Chr4g0066331 28.916 166 108 4 11 172 159 318 6.56e-21 88.6
Msa1099370 MtrunA17_Chr5g0414981 31.928 166 101 7 12 172 195 353 6.33e-20 86.7
Msa1099370 MtrunA17_Chr7g0259321 27.128 188 119 5 11 189 165 343 6.64e-18 80.5
Msa1099370 MtrunA17_Chr6g0451981 27.841 176 113 6 12 181 180 347 9.00e-18 80.1
Msa1099370 MtrunA17_Chr7g0269751 29.268 164 105 5 12 171 174 330 9.55e-18 80.1
Msa1099370 MtrunA17_Chr3g0127611 29.050 179 109 6 4 174 146 314 4.06e-17 78.2
Msa1099370 MtrunA17_Chr3g0141321 29.050 179 108 8 3 172 144 312 2.39e-16 75.9
Msa1099370 MtrunA17_Chr8g0373671 26.111 180 112 6 3 171 147 316 7.70e-15 71.6
Msa1099370 MtrunA17_Chr1g0154521 27.119 177 115 6 3 172 170 339 4.53e-14 69.7
Msa1099370 MtrunA17_Chr5g0403501 26.437 174 115 6 4 171 172 338 4.66e-14 69.7
Msa1099370 MtrunA17_Chr1g0196511 27.660 188 118 6 12 190 169 347 2.22e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1099370 AT3G01040.1 84.343 198 31 0 4 201 302 499 1.27e-127 369
Msa1099370 AT3G01040.2 84.343 198 31 0 4 201 335 532 5.30e-127 368
Msa1099370 AT3G01040.3 84.343 198 31 0 4 201 335 532 5.30e-127 368
Msa1099370 AT5G15470.1 83.838 198 32 0 4 201 335 532 5.30e-127 368
Msa1099370 AT5G54690.1 65.306 196 68 0 7 202 340 535 9.36e-99 296
Msa1099370 AT3G25140.1 50.769 195 89 2 4 198 369 556 1.32e-70 224
Msa1099370 AT5G47780.1 51.531 196 88 3 4 199 426 614 4.14e-69 222
Msa1099370 AT3G58790.2 50.254 197 97 1 4 199 210 406 1.62e-68 215
Msa1099370 AT3G58790.1 50.254 197 97 1 4 199 342 538 2.04e-67 216
Msa1099370 AT3G61130.1 46.465 198 99 3 4 201 483 673 1.42e-66 216
Msa1099370 AT4G38270.2 47.475 198 97 2 4 201 486 676 3.65e-65 213
Msa1099370 AT4G38270.1 47.475 198 97 2 4 201 490 680 3.93e-65 213
Msa1099370 AT1G18580.1 48.454 194 93 3 4 197 348 534 8.05e-65 209
Msa1099370 AT2G46480.3 48.990 198 94 2 4 201 350 540 1.13e-61 201
Msa1099370 AT2G46480.4 48.990 198 94 2 4 201 363 553 1.51e-61 201
Msa1099370 AT3G02350.1 48.980 196 93 2 4 199 371 559 6.21e-59 194
Msa1099370 AT2G20810.1 49.744 195 90 3 4 198 348 534 2.19e-58 192
Msa1099370 AT2G46480.2 42.424 198 82 2 4 201 350 515 5.52e-50 169
Msa1099370 AT2G46480.1 42.424 198 82 2 4 201 363 528 8.16e-50 169
Msa1099370 AT1G06780.2 40.404 198 112 3 4 200 409 601 4.74e-48 166
Msa1099370 AT1G06780.1 40.404 198 112 3 4 200 396 588 4.81e-48 165
Msa1099370 AT2G30575.1 39.394 198 116 2 4 201 417 610 1.94e-46 161
Msa1099370 AT2G38650.2 36.735 196 111 3 4 199 435 617 4.09e-33 125
Msa1099370 AT2G38650.1 36.735 196 111 3 4 199 435 617 4.09e-33 125
Msa1099370 AT1G70090.1 30.570 193 113 9 8 189 180 362 3.27e-20 87.4
Msa1099370 AT1G70090.2 30.570 193 113 9 8 189 180 362 3.27e-20 87.4
Msa1099370 AT4G02130.3 28.191 188 123 4 8 189 161 342 5.74e-20 86.7
Msa1099370 AT4G02130.1 28.191 188 123 4 8 189 161 342 5.74e-20 86.7
Msa1099370 AT4G02130.2 28.191 188 123 4 8 189 161 342 5.74e-20 86.7
Msa1099370 AT1G24170.1 29.412 187 111 8 11 186 186 362 2.14e-18 82.4
Msa1099370 AT3G06260.1 25.989 177 113 6 4 172 156 322 2.40e-18 82.0
Msa1099370 AT3G62660.1 27.568 185 125 3 8 189 175 353 4.73e-18 81.3
Msa1099370 AT3G28340.1 27.684 177 114 6 3 172 160 329 1.47e-17 80.1
Msa1099370 AT1G02720.1 27.320 194 130 4 8 198 176 361 1.97e-17 79.7
Msa1099370 AT1G02720.2 27.320 194 130 4 8 198 176 361 1.97e-17 79.7
Msa1099370 AT1G13250.1 30.636 173 110 5 4 172 150 316 9.42e-16 74.7
Msa1099370 AT2G38650.3 43.810 105 47 2 4 108 435 527 1.56e-14 71.6
Msa1099370 AT1G19300.1 27.429 175 115 6 2 171 155 322 2.97e-14 70.5
Msa1099370 AT3G50760.1 25.967 181 112 7 4 172 142 312 2.16e-13 68.2

Find 82 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGCGTTGAATGCATTTAA+AGG 0.230537 7_3:-27914992 Msa1099370:CDS
TTGAACATCTTCGGCCATTT+TGG 0.246133 7_3:-27914835 Msa1099370:CDS
ATACTATTATTGATCTTCTA+TGG 0.263987 7_3:-27914474 Msa1099370:three_prime_UTR
ACGCGACTTGTCTGCACTTT+GGG 0.274770 7_3:-27916014 Msa1099370:CDS
GACTATTAAGAACGTGAAAA+AGG 0.280499 7_3:-27914909 Msa1099370:CDS
GCATGAGATTGCTTTGTTAC+AGG 0.281022 7_3:-27914206 Msa1099370:three_prime_UTR
AAGATTCCATAGTTGAATAT+TGG 0.284120 7_3:-27914439 Msa1099370:three_prime_UTR
GACCTTGAAGGCAAGGTAAA+TGG 0.316416 7_3:-27915986 Msa1099370:CDS
TAAGAGAAACTTATCATTCC+TGG 0.318236 7_3:-27915796 Msa1099370:CDS
CGCCATTTACCTTGCCTTCA+AGG 0.325132 7_3:+27915984 None:intergenic
AAGACTACCTTGTCAAGGTT+TGG 0.325370 7_3:+27916061 None:intergenic
TTGACATACTTGGTCCAAAA+TGG 0.340621 7_3:+27914821 None:intergenic
TATTCTCCAATATTCAACTA+TGG 0.341554 7_3:+27914433 None:intergenic
TCAATTGGGGAACTGTTTGC+AGG 0.364026 7_3:-27914178 Msa1099370:three_prime_UTR
AGACTACCTTGTCAAGGTTT+GGG 0.370569 7_3:+27916062 None:intergenic
TCCCCTCATATCAAATCATT+TGG 0.373039 7_3:-27915888 Msa1099370:CDS
TTCTGCACATTTCCAATGTC+TGG 0.377425 7_3:+27914085 None:intergenic
TTGTTACAGGTCCATTCAAT+TGG 0.378384 7_3:-27914193 Msa1099370:three_prime_UTR
CGGCAGCGGACTATGATTCT+TGG 0.378716 7_3:+27914765 None:intergenic
ACCTGTTTCATCAATCTTGT+TGG 0.382219 7_3:-27914385 Msa1099370:three_prime_UTR
TCCGCTGCCGACTAGTTCTA+TGG 0.384146 7_3:-27914752 Msa1099370:three_prime_UTR
GAGTTATTACAGTCTCTAAA+TGG 0.394593 7_3:-27914569 Msa1099370:three_prime_UTR
TGTTACAGGTCCATTCAATT+GGG 0.412730 7_3:-27914192 Msa1099370:three_prime_UTR
TTCCTAGCTTCCACATTGTT+AGG 0.412907 7_3:+27915023 None:intergenic
CTTGCAGAGGAGAAGATGAT+TGG 0.415124 7_3:-27915952 Msa1099370:CDS
TCTTGGCACATGCTTGGCTT+AGG 0.416454 7_3:-27914947 Msa1099370:CDS
CAATTGGCTTTGAACATCTT+CGG 0.423826 7_3:-27914844 Msa1099370:CDS
TACGCCCATGCACACTCATC+AGG 0.425440 7_3:+27915863 None:intergenic
CTTTGGGAAATTGACCTTGA+AGG 0.430875 7_3:-27915998 Msa1099370:CDS
AACGCGACTTGTCTGCACTT+TGG 0.431424 7_3:-27916015 Msa1099370:CDS
GGTCCAAATGATTTGATATG+AGG 0.436395 7_3:+27915885 None:intergenic
ATTTGAATAATTGACATACT+TGG 0.448993 7_3:+27914811 None:intergenic
ACCAACAAGATTGATGAAAC+AGG 0.460512 7_3:+27914384 None:intergenic
GGAATGAATATCTTCGATCT+TGG 0.464332 7_3:-27915839 Msa1099370:CDS
CGAAGATGTTCAAAGCCAAT+TGG 0.471229 7_3:+27914845 None:intergenic
TCAAAACCCTGGTTACCAAT+TGG 0.472317 7_3:-27914860 Msa1099370:CDS
GATCCCTCTTGGCACATGCT+TGG 0.476353 7_3:-27914953 Msa1099370:CDS
TGCATTCAACGCAGGAGGTA+GGG 0.477082 7_3:+27915000 None:intergenic
AACTCTTACCTCTTTAAGCC+AGG 0.481103 7_3:+27915778 None:intergenic
TGATAATAACAAATCAAAGT+TGG 0.495815 7_3:+27914257 None:intergenic
CAAACAGTTCCCCAATTGAA+TGG 0.497960 7_3:+27914182 None:intergenic
TTATCATTCCTGGCTTAAAG+AGG 0.501060 7_3:-27915786 Msa1099370:intron
TTCAAAGCCAATTGGTAACC+AGG 0.502424 7_3:+27914853 None:intergenic
ATGCATTCAACGCAGGAGGT+AGG 0.504618 7_3:+27914999 None:intergenic
TTGCAGAGGAGAAGATGATT+GGG 0.512655 7_3:-27915951 Msa1099370:CDS
TTCATCCAATCGATCCCTCT+TGG 0.512998 7_3:-27914964 Msa1099370:CDS
GTCCAAATGATTTGATATGA+GGG 0.523698 7_3:+27915886 None:intergenic
TTGTTATTATCATATGATGA+TGG 0.524017 7_3:-27914246 Msa1099370:three_prime_UTR
GGAAATTGACCTTGAAGGCA+AGG 0.524044 7_3:-27915993 Msa1099370:CDS
TTCTCCTCTGCAAGTTTCCA+CGG 0.529247 7_3:+27915961 None:intergenic
TGTACAACAGTGAATATGAA+AGG 0.531990 7_3:-27914722 Msa1099370:three_prime_UTR
GATGAGTGTGCATGGGCGTA+TGG 0.544278 7_3:-27915860 Msa1099370:CDS
GTACAACAGTGAATATGAAA+GGG 0.550482 7_3:-27914721 Msa1099370:three_prime_UTR
CTTCTCGATGGCAGAATCTG+AGG 0.553269 7_3:-27915051 Msa1099370:intron
TGGACCCTGATGAGTGTGCA+TGG 0.565820 7_3:-27915868 Msa1099370:CDS
AGCCTAACAATGTGGAAGCT+AGG 0.567570 7_3:-27915025 Msa1099370:CDS
ATATTGGAGAATAAACTGAA+TGG 0.579279 7_3:-27914423 Msa1099370:three_prime_UTR
GTTACAGGTCCATTCAATTG+GGG 0.580396 7_3:-27914191 Msa1099370:three_prime_UTR
GTGTTGAGAACATTACTACT+AGG 0.585200 7_3:-27914363 Msa1099370:three_prime_UTR
TAACAAATCAAAGTTGGTGA+AGG 0.588552 7_3:+27914263 None:intergenic
ACTAGGACAGTTAATTTGTG+AGG 0.594125 7_3:-27914346 Msa1099370:three_prime_UTR
ATGTGCCAAGAGGGATCGAT+TGG 0.600400 7_3:+27914959 None:intergenic
ATATCTTCGATCTTGGTGCA+TGG 0.602662 7_3:-27915832 Msa1099370:CDS
TCAAAGCCAATTGGTAACCA+GGG 0.606301 7_3:+27914854 None:intergenic
TATGTAAGACTACCAGACAT+TGG 0.607607 7_3:-27914097 Msa1099370:three_prime_UTR
AAGATTGATGAAACAGGTCA+TGG 0.609048 7_3:+27914390 None:intergenic
AAGCCAAGCATGTGCCAAGA+GGG 0.610975 7_3:+27914950 None:intergenic
ACCATAGAACTAGTCGGCAG+CGG 0.611877 7_3:+27914751 None:intergenic
CCTTTAAATGCATTCAACGC+AGG 0.620618 7_3:+27914992 None:intergenic
ACGCCCATGCACACTCATCA+GGG 0.632289 7_3:+27915864 None:intergenic
GGACCCTGATGAGTGTGCAT+GGG 0.633464 7_3:-27915867 Msa1099370:CDS
TTAAATGCATTCAACGCAGG+AGG 0.641244 7_3:+27914995 None:intergenic
AATCAAACCATAGAACTAGT+CGG 0.650156 7_3:+27914745 None:intergenic
TCCAAATGATTTGATATGAG+GGG 0.652975 7_3:+27915887 None:intergenic
AAAATGATTCTCTAGAAGGG+GGG 0.657419 7_3:+27914321 None:intergenic
GCCGCTGTTATTCACTACAA+CGG 0.665629 7_3:-27914887 Msa1099370:CDS
TAAGCCAAGCATGTGCCAAG+AGG 0.676961 7_3:+27914949 None:intergenic
ACAACGGCCAGTCAAAACCC+TGG 0.684054 7_3:-27914871 Msa1099370:CDS
TGAGGTCAAGCCTAACAATG+TGG 0.699749 7_3:-27915033 Msa1099370:CDS
GGCGCCGTGGAAACTTGCAG+AGG 0.701048 7_3:-27915965 Msa1099370:CDS
AGGCAAGGTAAATGGCGCCG+TGG 0.717361 7_3:-27915978 Msa1099370:CDS
GCCGTTGTAGTGAATAACAG+CGG 0.723408 7_3:+27914886 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTACTTTATAATTAATTTA+TGG + chr7_3:27914523-27914542 None:intergenic 10.0%
!! ACTACTTTATAATTAATTTA+TGG + chr7_3:27914523-27914542 None:intergenic 10.0%
!! ATTATAAAGTAGTAGTTATG+TGG - chr7_3:27914530-27914549 Msa1099370:three_prime_UTR 20.0%
!! TTATAAAGTAGTAGTTATGT+GGG - chr7_3:27914531-27914550 Msa1099370:three_prime_UTR 20.0%
!! TTCAAATAAACAAAAGCAAA+AGG + chr7_3:27914578-27914597 None:intergenic 20.0%
!! TATCTCAATTTCAGAAAAAA+AGG + chr7_3:27915024-27915043 None:intergenic 20.0%
!!! TTTTTTTCTGAAATTGAGAT+AGG - chr7_3:27915023-27915042 Msa1099370:CDS 20.0%
!!! TTTTTTCTGAAATTGAGATA+GGG - chr7_3:27915024-27915043 Msa1099370:CDS 20.0%
!! ATTTGAATAATTGACATACT+TGG + chr7_3:27915369-27915388 None:intergenic 20.0%
!! ATACTATTATTGATCTTCTA+TGG - chr7_3:27915703-27915722 Msa1099370:intron 20.0%
!!! TAAAAAATGATTCTCTAGAA+GGG + chr7_3:27915862-27915881 None:intergenic 20.0%
!! TGATAATAACAAATCAAAGT+TGG + chr7_3:27915923-27915942 None:intergenic 20.0%
!!! TTGTTATTATCATATGATGA+TGG - chr7_3:27915931-27915950 Msa1099370:CDS 20.0%
!! ATTATAAAGTAGTAGTTATG+TGG - chr7_3:27914530-27914549 Msa1099370:three_prime_UTR 20.0%
!! TTATAAAGTAGTAGTTATGT+GGG - chr7_3:27914531-27914550 Msa1099370:three_prime_UTR 20.0%
!! TTCAAATAAACAAAAGCAAA+AGG + chr7_3:27914578-27914597 None:intergenic 20.0%
!! TATCTCAATTTCAGAAAAAA+AGG + chr7_3:27915024-27915043 None:intergenic 20.0%
!!! TTTTTTTCTGAAATTGAGAT+AGG - chr7_3:27915023-27915042 Msa1099370:CDS 20.0%
!!! TTTTTTCTGAAATTGAGATA+GGG - chr7_3:27915024-27915043 Msa1099370:CDS 20.0%
!! ATTTGAATAATTGACATACT+TGG + chr7_3:27915369-27915388 None:intergenic 20.0%
!! ATACTATTATTGATCTTCTA+TGG - chr7_3:27915703-27915722 Msa1099370:intron 20.0%
!!! TAAAAAATGATTCTCTAGAA+GGG + chr7_3:27915862-27915881 None:intergenic 20.0%
!! TGATAATAACAAATCAAAGT+TGG + chr7_3:27915923-27915942 None:intergenic 20.0%
!!! TTGTTATTATCATATGATGA+TGG - chr7_3:27915931-27915950 Msa1099370:CDS 20.0%
!! ACATAAACTCAGACTTATTT+TGG - chr7_3:27914423-27914442 Msa1099370:three_prime_UTR 25.0%
! GATACATAGTGAATATAACA+AGG + chr7_3:27914895-27914914 None:intergenic 25.0%
!!! GATTTTGACAACAATTTAGA+TGG + chr7_3:27914956-27914975 None:intergenic 25.0%
! AAGCGATTAAAAAACTTTGT+TGG - chr7_3:27915551-27915570 Msa1099370:intron 25.0%
! AAGATTCCATAGTTGAATAT+TGG - chr7_3:27915738-27915757 Msa1099370:intron 25.0%
! TATTCTCCAATATTCAACTA+TGG + chr7_3:27915747-27915766 None:intergenic 25.0%
! ATATTGGAGAATAAACTGAA+TGG - chr7_3:27915754-27915773 Msa1099370:intron 25.0%
!! AAAAAATGATTCTCTAGAAG+GGG + chr7_3:27915861-27915880 None:intergenic 25.0%
! CTAAAAAATGATTCTCTAGA+AGG + chr7_3:27915863-27915882 None:intergenic 25.0%
!! ACATAAACTCAGACTTATTT+TGG - chr7_3:27914423-27914442 Msa1099370:three_prime_UTR 25.0%
! GATACATAGTGAATATAACA+AGG + chr7_3:27914895-27914914 None:intergenic 25.0%
!!! GATTTTGACAACAATTTAGA+TGG + chr7_3:27914956-27914975 None:intergenic 25.0%
! AAGCGATTAAAAAACTTTGT+TGG - chr7_3:27915551-27915570 Msa1099370:intron 25.0%
! AAGATTCCATAGTTGAATAT+TGG - chr7_3:27915738-27915757 Msa1099370:intron 25.0%
! TATTCTCCAATATTCAACTA+TGG + chr7_3:27915747-27915766 None:intergenic 25.0%
! ATATTGGAGAATAAACTGAA+TGG - chr7_3:27915754-27915773 Msa1099370:intron 25.0%
!! AAAAAATGATTCTCTAGAAG+GGG + chr7_3:27915861-27915880 None:intergenic 25.0%
! CTAAAAAATGATTCTCTAGA+AGG + chr7_3:27915863-27915882 None:intergenic 25.0%
! GGGTAATGTCTAAACATTTT+AGG - chr7_3:27914246-27914265 Msa1099370:three_prime_UTR 30.0%
TCCAAATGATTTGATATGAG+GGG + chr7_3:27914293-27914312 None:intergenic 30.0%
GTCCAAATGATTTGATATGA+GGG + chr7_3:27914294-27914313 None:intergenic 30.0%
TAAGAGAAACTTATCATTCC+TGG - chr7_3:27914381-27914400 Msa1099370:three_prime_UTR 30.0%
ACACAAAATGAGAGAACAAT+TGG - chr7_3:27914607-27914626 Msa1099370:three_prime_UTR 30.0%
AAAATGAGAGAACAATTGGT+TGG - chr7_3:27914611-27914630 Msa1099370:three_prime_UTR 30.0%
ACATGCTTAATTATGTTCAG+TGG - chr7_3:27914650-27914669 Msa1099370:three_prime_UTR 30.0%
GATAGTTCATGGATATTACA+GGG - chr7_3:27914672-27914691 Msa1099370:three_prime_UTR 30.0%
GTATATTTGAACACCAATCA+TGG - chr7_3:27914769-27914788 Msa1099370:exon 30.0%
TGATATACACTAACCATGAT+TGG + chr7_3:27914785-27914804 None:intergenic 30.0%
! TCTTGGTTAGTTAAATTCAG+CGG - chr7_3:27914849-27914868 Msa1099370:CDS 30.0%
GTTATTGCAGTTCAAATATG+TGG + chr7_3:27914934-27914953 None:intergenic 30.0%
CAATTTCAGAAAAAAAGGAG+AGG + chr7_3:27915019-27915038 None:intergenic 30.0%
GACTATTAAGAACGTGAAAA+AGG - chr7_3:27915268-27915287 Msa1099370:intron 30.0%
AATCAAACCATAGAACTAGT+CGG + chr7_3:27915435-27915454 None:intergenic 30.0%
TGTACAACAGTGAATATGAA+AGG - chr7_3:27915455-27915474 Msa1099370:intron 30.0%
GTACAACAGTGAATATGAAA+GGG - chr7_3:27915456-27915475 Msa1099370:intron 30.0%
CTTCAAGACGATAGAAAAAA+TGG - chr7_3:27915517-27915536 Msa1099370:intron 30.0%
CGATTAAAAAACTTTGTTGG+TGG - chr7_3:27915554-27915573 Msa1099370:intron 30.0%
TTTCTGCAAAAATGTAGGAA+TGG + chr7_3:27915588-27915607 None:intergenic 30.0%
AACTCTTTCTGCAAAAATGT+AGG + chr7_3:27915593-27915612 None:intergenic 30.0%
GAGTTATTACAGTCTCTAAA+TGG - chr7_3:27915608-27915627 Msa1099370:intron 30.0%
! AAAAACGCATCCTCTATTTT+TGG - chr7_3:27915667-27915686 Msa1099370:intron 30.0%
! AAAAATGATTCTCTAGAAGG+GGG + chr7_3:27915860-27915879 None:intergenic 30.0%
!! AAGTTGGTGAAGGTAAAAAT+TGG + chr7_3:27915907-27915926 None:intergenic 30.0%
!! TAACAAATCAAAGTTGGTGA+AGG + chr7_3:27915917-27915936 None:intergenic 30.0%
! GGGTAATGTCTAAACATTTT+AGG - chr7_3:27914246-27914265 Msa1099370:three_prime_UTR 30.0%
TCCAAATGATTTGATATGAG+GGG + chr7_3:27914293-27914312 None:intergenic 30.0%
GTCCAAATGATTTGATATGA+GGG + chr7_3:27914294-27914313 None:intergenic 30.0%
TAAGAGAAACTTATCATTCC+TGG - chr7_3:27914381-27914400 Msa1099370:three_prime_UTR 30.0%
ACACAAAATGAGAGAACAAT+TGG - chr7_3:27914607-27914626 Msa1099370:three_prime_UTR 30.0%
AAAATGAGAGAACAATTGGT+TGG - chr7_3:27914611-27914630 Msa1099370:three_prime_UTR 30.0%
ACATGCTTAATTATGTTCAG+TGG - chr7_3:27914650-27914669 Msa1099370:three_prime_UTR 30.0%
GATAGTTCATGGATATTACA+GGG - chr7_3:27914672-27914691 Msa1099370:three_prime_UTR 30.0%
GTATATTTGAACACCAATCA+TGG - chr7_3:27914769-27914788 Msa1099370:exon 30.0%
TGATATACACTAACCATGAT+TGG + chr7_3:27914785-27914804 None:intergenic 30.0%
! TCTTGGTTAGTTAAATTCAG+CGG - chr7_3:27914849-27914868 Msa1099370:CDS 30.0%
GTTATTGCAGTTCAAATATG+TGG + chr7_3:27914934-27914953 None:intergenic 30.0%
CAATTTCAGAAAAAAAGGAG+AGG + chr7_3:27915019-27915038 None:intergenic 30.0%
GACTATTAAGAACGTGAAAA+AGG - chr7_3:27915268-27915287 Msa1099370:intron 30.0%
AATCAAACCATAGAACTAGT+CGG + chr7_3:27915435-27915454 None:intergenic 30.0%
TGTACAACAGTGAATATGAA+AGG - chr7_3:27915455-27915474 Msa1099370:intron 30.0%
GTACAACAGTGAATATGAAA+GGG - chr7_3:27915456-27915475 Msa1099370:intron 30.0%
CTTCAAGACGATAGAAAAAA+TGG - chr7_3:27915517-27915536 Msa1099370:intron 30.0%
CGATTAAAAAACTTTGTTGG+TGG - chr7_3:27915554-27915573 Msa1099370:intron 30.0%
TTTCTGCAAAAATGTAGGAA+TGG + chr7_3:27915588-27915607 None:intergenic 30.0%
AACTCTTTCTGCAAAAATGT+AGG + chr7_3:27915593-27915612 None:intergenic 30.0%
GAGTTATTACAGTCTCTAAA+TGG - chr7_3:27915608-27915627 Msa1099370:intron 30.0%
! AAAAACGCATCCTCTATTTT+TGG - chr7_3:27915667-27915686 Msa1099370:intron 30.0%
! AAAAATGATTCTCTAGAAGG+GGG + chr7_3:27915860-27915879 None:intergenic 30.0%
!! AAGTTGGTGAAGGTAAAAAT+TGG + chr7_3:27915907-27915926 None:intergenic 30.0%
!! TAACAAATCAAAGTTGGTGA+AGG + chr7_3:27915917-27915936 None:intergenic 30.0%
TCCCCTCATATCAAATCATT+TGG - chr7_3:27914289-27914308 Msa1099370:three_prime_UTR 35.0%
GGTCCAAATGATTTGATATG+AGG + chr7_3:27914295-27914314 None:intergenic 35.0%
GGAATGAATATCTTCGATCT+TGG - chr7_3:27914338-27914357 Msa1099370:three_prime_UTR 35.0%
TTATCATTCCTGGCTTAAAG+AGG - chr7_3:27914391-27914410 Msa1099370:three_prime_UTR 35.0%
CAAAAGCAAAAGGAAGCAAA+AGG + chr7_3:27914568-27914587 None:intergenic 35.0%
TATGTTCAGTGGATAGTTCA+TGG - chr7_3:27914661-27914680 Msa1099370:three_prime_UTR 35.0%
GGATAGTTCATGGATATTAC+AGG - chr7_3:27914671-27914690 Msa1099370:three_prime_UTR 35.0%
ACTACTCATTAACCATCCAT+TGG - chr7_3:27914699-27914718 Msa1099370:three_prime_UTR 35.0%
TCATGGTTAATTGTGTCCAA+TGG + chr7_3:27914718-27914737 None:intergenic 35.0%
GTCAATGACGTTGAAAATCA+TGG + chr7_3:27914735-27914754 None:intergenic 35.0%
TCATGAACTACGACTTTCAA+GGG + chr7_3:27914820-27914839 None:intergenic 35.0%
GTTCATGAGGTTCAAAATCT+TGG - chr7_3:27914832-27914851 Msa1099370:CDS 35.0%
TCAGAAAAAAAGGAGAGGAA+GGG + chr7_3:27915014-27915033 None:intergenic 35.0%
TTCAGAAAAAAAGGAGAGGA+AGG + chr7_3:27915015-27915034 None:intergenic 35.0%
TATTACTGACAACTTCTCGA+TGG - chr7_3:27915114-27915133 Msa1099370:intron 35.0%
!! CAATTGGCTTTGAACATCTT+CGG - chr7_3:27915333-27915352 Msa1099370:intron 35.0%
TTGACATACTTGGTCCAAAA+TGG + chr7_3:27915359-27915378 None:intergenic 35.0%
GATAGAAAAAATGGCTGAGA+GGG - chr7_3:27915526-27915545 Msa1099370:intron 35.0%
! GTTTTTCATGTCACAACTCA+AGG + chr7_3:27915653-27915672 None:intergenic 35.0%
CTTTCACCAACCAAAAATAG+AGG + chr7_3:27915680-27915699 None:intergenic 35.0%
!!! CTCTATTTTTGGTTGGTGAA+AGG - chr7_3:27915678-27915697 Msa1099370:intron 35.0%
AAGATTGATGAAACAGGTCA+TGG + chr7_3:27915790-27915809 None:intergenic 35.0%
ACCTGTTTCATCAATCTTGT+TGG - chr7_3:27915792-27915811 Msa1099370:CDS 35.0%
ACCAACAAGATTGATGAAAC+AGG + chr7_3:27915796-27915815 None:intergenic 35.0%
GTGTTGAGAACATTACTACT+AGG - chr7_3:27915814-27915833 Msa1099370:CDS 35.0%
!! ACTAGGACAGTTAATTTGTG+AGG - chr7_3:27915831-27915850 Msa1099370:CDS 35.0%
! AAAATGATTCTCTAGAAGGG+GGG + chr7_3:27915859-27915878 None:intergenic 35.0%
TTGTTACAGGTCCATTCAAT+TGG - chr7_3:27915984-27916003 Msa1099370:CDS 35.0%
TGTTACAGGTCCATTCAATT+GGG - chr7_3:27915985-27916004 Msa1099370:CDS 35.0%
TATGTAAGACTACCAGACAT+TGG - chr7_3:27916080-27916099 Msa1099370:CDS 35.0%
TCCCCTCATATCAAATCATT+TGG - chr7_3:27914289-27914308 Msa1099370:three_prime_UTR 35.0%
GGTCCAAATGATTTGATATG+AGG + chr7_3:27914295-27914314 None:intergenic 35.0%
GGAATGAATATCTTCGATCT+TGG - chr7_3:27914338-27914357 Msa1099370:three_prime_UTR 35.0%
TTATCATTCCTGGCTTAAAG+AGG - chr7_3:27914391-27914410 Msa1099370:three_prime_UTR 35.0%
CAAAAGCAAAAGGAAGCAAA+AGG + chr7_3:27914568-27914587 None:intergenic 35.0%
TATGTTCAGTGGATAGTTCA+TGG - chr7_3:27914661-27914680 Msa1099370:three_prime_UTR 35.0%
GGATAGTTCATGGATATTAC+AGG - chr7_3:27914671-27914690 Msa1099370:three_prime_UTR 35.0%
ACTACTCATTAACCATCCAT+TGG - chr7_3:27914699-27914718 Msa1099370:three_prime_UTR 35.0%
TCATGGTTAATTGTGTCCAA+TGG + chr7_3:27914718-27914737 None:intergenic 35.0%
GTCAATGACGTTGAAAATCA+TGG + chr7_3:27914735-27914754 None:intergenic 35.0%
TCATGAACTACGACTTTCAA+GGG + chr7_3:27914820-27914839 None:intergenic 35.0%
GTTCATGAGGTTCAAAATCT+TGG - chr7_3:27914832-27914851 Msa1099370:CDS 35.0%
TCAGAAAAAAAGGAGAGGAA+GGG + chr7_3:27915014-27915033 None:intergenic 35.0%
TTCAGAAAAAAAGGAGAGGA+AGG + chr7_3:27915015-27915034 None:intergenic 35.0%
TATTACTGACAACTTCTCGA+TGG - chr7_3:27915114-27915133 Msa1099370:intron 35.0%
!! CAATTGGCTTTGAACATCTT+CGG - chr7_3:27915333-27915352 Msa1099370:intron 35.0%
TTGACATACTTGGTCCAAAA+TGG + chr7_3:27915359-27915378 None:intergenic 35.0%
GATAGAAAAAATGGCTGAGA+GGG - chr7_3:27915526-27915545 Msa1099370:intron 35.0%
! GTTTTTCATGTCACAACTCA+AGG + chr7_3:27915653-27915672 None:intergenic 35.0%
CTTTCACCAACCAAAAATAG+AGG + chr7_3:27915680-27915699 None:intergenic 35.0%
!!! CTCTATTTTTGGTTGGTGAA+AGG - chr7_3:27915678-27915697 Msa1099370:intron 35.0%
AAGATTGATGAAACAGGTCA+TGG + chr7_3:27915790-27915809 None:intergenic 35.0%
ACCTGTTTCATCAATCTTGT+TGG - chr7_3:27915792-27915811 Msa1099370:CDS 35.0%
ACCAACAAGATTGATGAAAC+AGG + chr7_3:27915796-27915815 None:intergenic 35.0%
GTGTTGAGAACATTACTACT+AGG - chr7_3:27915814-27915833 Msa1099370:CDS 35.0%
!! ACTAGGACAGTTAATTTGTG+AGG - chr7_3:27915831-27915850 Msa1099370:CDS 35.0%
! AAAATGATTCTCTAGAAGGG+GGG + chr7_3:27915859-27915878 None:intergenic 35.0%
TTGTTACAGGTCCATTCAAT+TGG - chr7_3:27915984-27916003 Msa1099370:CDS 35.0%
TGTTACAGGTCCATTCAATT+GGG - chr7_3:27915985-27916004 Msa1099370:CDS 35.0%
TATGTAAGACTACCAGACAT+TGG - chr7_3:27916080-27916099 Msa1099370:CDS 35.0%
! ACTTTTCCCAAACCTTGACA+AGG - chr7_3:27914109-27914128 Msa1099370:three_prime_UTR 40.0%
AGACTACCTTGTCAAGGTTT+GGG + chr7_3:27914118-27914137 None:intergenic 40.0%
AAGACTACCTTGTCAAGGTT+TGG + chr7_3:27914119-27914138 None:intergenic 40.0%
CCAAAAAGACTACCTTGTCA+AGG + chr7_3:27914124-27914143 None:intergenic 40.0%
! CCTTGACAAGGTAGTCTTTT+TGG - chr7_3:27914121-27914140 Msa1099370:intron 40.0%
! CTTTGGGAAATTGACCTTGA+AGG - chr7_3:27914179-27914198 Msa1099370:three_prime_UTR 40.0%
TTGCAGAGGAGAAGATGATT+GGG - chr7_3:27914226-27914245 Msa1099370:three_prime_UTR 40.0%
! ATATCTTCGATCTTGGTGCA+TGG - chr7_3:27914345-27914364 Msa1099370:three_prime_UTR 40.0%
AACTCTTACCTCTTTAAGCC+AGG + chr7_3:27914402-27914421 None:intergenic 40.0%
TAGTAGTTATGTGGGAACAC+AGG - chr7_3:27914539-27914558 Msa1099370:three_prime_UTR 40.0%
GGTTAATTGTGTCCAATGGA+TGG + chr7_3:27914714-27914733 None:intergenic 40.0%
AAATATACACCCGAAAGTCG+TGG + chr7_3:27914757-27914776 None:intergenic 40.0%
CTCATGAACTACGACTTTCA+AGG + chr7_3:27914821-27914840 None:intergenic 40.0%
CTTGAAAGTCGTAGTTCATG+AGG - chr7_3:27914819-27914838 Msa1099370:CDS 40.0%
CTGAAATTGAGATAGGGTGA+TGG - chr7_3:27915030-27915049 Msa1099370:CDS 40.0%
! AAATTGAGATAGGGTGATGG+AGG - chr7_3:27915033-27915052 Msa1099370:CDS 40.0%
TGATGGAGGTTAGAAAGTCT+TGG - chr7_3:27915047-27915066 Msa1099370:intron 40.0%
TTCCTAGCTTCCACATTGTT+AGG + chr7_3:27915157-27915176 None:intergenic 40.0%
TTAAATGCATTCAACGCAGG+AGG + chr7_3:27915185-27915204 None:intergenic 40.0%
CCTTTAAATGCATTCAACGC+AGG + chr7_3:27915188-27915207 None:intergenic 40.0%
CCTGCGTTGAATGCATTTAA+AGG - chr7_3:27915185-27915204 Msa1099370:intron 40.0%
TCAAAACCCTGGTTACCAAT+TGG - chr7_3:27915317-27915336 Msa1099370:intron 40.0%
! TCAAAGCCAATTGGTAACCA+GGG + chr7_3:27915326-27915345 None:intergenic 40.0%
! TTCAAAGCCAATTGGTAACC+AGG + chr7_3:27915327-27915346 None:intergenic 40.0%
CGAAGATGTTCAAAGCCAAT+TGG + chr7_3:27915335-27915354 None:intergenic 40.0%
! TTGAACATCTTCGGCCATTT+TGG - chr7_3:27915342-27915361 Msa1099370:intron 40.0%
CGATAGAAAAAATGGCTGAG+AGG - chr7_3:27915525-27915544 Msa1099370:intron 40.0%
!!! ACGCATCCTCTATTTTTGGT+TGG - chr7_3:27915671-27915690 Msa1099370:intron 40.0%
! GCATGAGATTGCTTTGTTAC+AGG - chr7_3:27915971-27915990 Msa1099370:CDS 40.0%
GTTACAGGTCCATTCAATTG+GGG - chr7_3:27915986-27916005 Msa1099370:CDS 40.0%
CAAACAGTTCCCCAATTGAA+TGG + chr7_3:27915998-27916017 None:intergenic 40.0%
! ACTTTTCCCAAACCTTGACA+AGG - chr7_3:27914109-27914128 Msa1099370:three_prime_UTR 40.0%
AGACTACCTTGTCAAGGTTT+GGG + chr7_3:27914118-27914137 None:intergenic 40.0%
AAGACTACCTTGTCAAGGTT+TGG + chr7_3:27914119-27914138 None:intergenic 40.0%
CCAAAAAGACTACCTTGTCA+AGG + chr7_3:27914124-27914143 None:intergenic 40.0%
! CCTTGACAAGGTAGTCTTTT+TGG - chr7_3:27914121-27914140 Msa1099370:intron 40.0%
! CTTTGGGAAATTGACCTTGA+AGG - chr7_3:27914179-27914198 Msa1099370:three_prime_UTR 40.0%
TTGCAGAGGAGAAGATGATT+GGG - chr7_3:27914226-27914245 Msa1099370:three_prime_UTR 40.0%
! ATATCTTCGATCTTGGTGCA+TGG - chr7_3:27914345-27914364 Msa1099370:three_prime_UTR 40.0%
AACTCTTACCTCTTTAAGCC+AGG + chr7_3:27914402-27914421 None:intergenic 40.0%
TAGTAGTTATGTGGGAACAC+AGG - chr7_3:27914539-27914558 Msa1099370:three_prime_UTR 40.0%
GGTTAATTGTGTCCAATGGA+TGG + chr7_3:27914714-27914733 None:intergenic 40.0%
AAATATACACCCGAAAGTCG+TGG + chr7_3:27914757-27914776 None:intergenic 40.0%
CTCATGAACTACGACTTTCA+AGG + chr7_3:27914821-27914840 None:intergenic 40.0%
CTTGAAAGTCGTAGTTCATG+AGG - chr7_3:27914819-27914838 Msa1099370:CDS 40.0%
CTGAAATTGAGATAGGGTGA+TGG - chr7_3:27915030-27915049 Msa1099370:CDS 40.0%
! AAATTGAGATAGGGTGATGG+AGG - chr7_3:27915033-27915052 Msa1099370:CDS 40.0%
TGATGGAGGTTAGAAAGTCT+TGG - chr7_3:27915047-27915066 Msa1099370:intron 40.0%
TTCCTAGCTTCCACATTGTT+AGG + chr7_3:27915157-27915176 None:intergenic 40.0%
TTAAATGCATTCAACGCAGG+AGG + chr7_3:27915185-27915204 None:intergenic 40.0%
CCTTTAAATGCATTCAACGC+AGG + chr7_3:27915188-27915207 None:intergenic 40.0%
CCTGCGTTGAATGCATTTAA+AGG - chr7_3:27915185-27915204 Msa1099370:intron 40.0%
TCAAAACCCTGGTTACCAAT+TGG - chr7_3:27915317-27915336 Msa1099370:intron 40.0%
! TCAAAGCCAATTGGTAACCA+GGG + chr7_3:27915326-27915345 None:intergenic 40.0%
! TTCAAAGCCAATTGGTAACC+AGG + chr7_3:27915327-27915346 None:intergenic 40.0%
CGAAGATGTTCAAAGCCAAT+TGG + chr7_3:27915335-27915354 None:intergenic 40.0%
! TTGAACATCTTCGGCCATTT+TGG - chr7_3:27915342-27915361 Msa1099370:intron 40.0%
CGATAGAAAAAATGGCTGAG+AGG - chr7_3:27915525-27915544 Msa1099370:intron 40.0%
!!! ACGCATCCTCTATTTTTGGT+TGG - chr7_3:27915671-27915690 Msa1099370:intron 40.0%
! GCATGAGATTGCTTTGTTAC+AGG - chr7_3:27915971-27915990 Msa1099370:CDS 40.0%
GTTACAGGTCCATTCAATTG+GGG - chr7_3:27915986-27916005 Msa1099370:CDS 40.0%
CAAACAGTTCCCCAATTGAA+TGG + chr7_3:27915998-27916017 None:intergenic 40.0%
! AGTCTTTTTGGACGACGATG+TGG - chr7_3:27914133-27914152 Msa1099370:intron 45.0%
GGAAATTGACCTTGAAGGCA+AGG - chr7_3:27914184-27914203 Msa1099370:three_prime_UTR 45.0%
GACCTTGAAGGCAAGGTAAA+TGG - chr7_3:27914191-27914210 Msa1099370:three_prime_UTR 45.0%
TTCTCCTCTGCAAGTTTCCA+CGG + chr7_3:27914219-27914238 None:intergenic 45.0%
CTTGCAGAGGAGAAGATGAT+TGG - chr7_3:27914225-27914244 Msa1099370:three_prime_UTR 45.0%
ACGTCATTGACCACGACTTT+CGG - chr7_3:27914744-27914763 Msa1099370:three_prime_UTR 45.0%
GGAGGTTAGAAAGTCTTGGT+TGG - chr7_3:27915051-27915070 Msa1099370:intron 45.0%
TGAGGTCAAGCCTAACAATG+TGG - chr7_3:27915144-27915163 Msa1099370:intron 45.0%
AGCCTAACAATGTGGAAGCT+AGG - chr7_3:27915152-27915171 Msa1099370:intron 45.0%
TTCATCCAATCGATCCCTCT+TGG - chr7_3:27915213-27915232 Msa1099370:intron 45.0%
GCCGCTGTTATTCACTACAA+CGG - chr7_3:27915290-27915309 Msa1099370:intron 45.0%
GCCGTTGTAGTGAATAACAG+CGG + chr7_3:27915294-27915313 None:intergenic 45.0%
!! TTGGTAACCAGGGTTTTGAC+TGG + chr7_3:27915316-27915335 None:intergenic 45.0%
TCAATTGGGGAACTGTTTGC+AGG - chr7_3:27915999-27916018 Msa1099370:CDS 45.0%
! AGTCTTTTTGGACGACGATG+TGG - chr7_3:27914133-27914152 Msa1099370:intron 45.0%
GGAAATTGACCTTGAAGGCA+AGG - chr7_3:27914184-27914203 Msa1099370:three_prime_UTR 45.0%
GACCTTGAAGGCAAGGTAAA+TGG - chr7_3:27914191-27914210 Msa1099370:three_prime_UTR 45.0%
TTCTCCTCTGCAAGTTTCCA+CGG + chr7_3:27914219-27914238 None:intergenic 45.0%
CTTGCAGAGGAGAAGATGAT+TGG - chr7_3:27914225-27914244 Msa1099370:three_prime_UTR 45.0%
ACGTCATTGACCACGACTTT+CGG - chr7_3:27914744-27914763 Msa1099370:three_prime_UTR 45.0%
GGAGGTTAGAAAGTCTTGGT+TGG - chr7_3:27915051-27915070 Msa1099370:intron 45.0%
TGAGGTCAAGCCTAACAATG+TGG - chr7_3:27915144-27915163 Msa1099370:intron 45.0%
AGCCTAACAATGTGGAAGCT+AGG - chr7_3:27915152-27915171 Msa1099370:intron 45.0%
TTCATCCAATCGATCCCTCT+TGG - chr7_3:27915213-27915232 Msa1099370:intron 45.0%
GCCGCTGTTATTCACTACAA+CGG - chr7_3:27915290-27915309 Msa1099370:intron 45.0%
GCCGTTGTAGTGAATAACAG+CGG + chr7_3:27915294-27915313 None:intergenic 45.0%
!! TTGGTAACCAGGGTTTTGAC+TGG + chr7_3:27915316-27915335 None:intergenic 45.0%
TCAATTGGGGAACTGTTTGC+AGG - chr7_3:27915999-27916018 Msa1099370:CDS 45.0%
!!! TATCAAAATTTTTAAATTAT+TGG - chr7_3:27914490-27914509 Msa1099370:three_prime_UTR 5.0%
!!! TATCAAAATTTTTAAATTAT+TGG - chr7_3:27914490-27914509 Msa1099370:three_prime_UTR 5.0%
AACGCGACTTGTCTGCACTT+TGG - chr7_3:27914162-27914181 Msa1099370:intron 50.0%
ACGCGACTTGTCTGCACTTT+GGG - chr7_3:27914163-27914182 Msa1099370:intron 50.0%
CGCCATTTACCTTGCCTTCA+AGG + chr7_3:27914196-27914215 None:intergenic 50.0%
CGTCATTGACCACGACTTTC+GGG - chr7_3:27914745-27914764 Msa1099370:three_prime_UTR 50.0%
CTTCTCGATGGCAGAATCTG+AGG - chr7_3:27915126-27915145 Msa1099370:intron 50.0%
TGCATTCAACGCAGGAGGTA+GGG + chr7_3:27915180-27915199 None:intergenic 50.0%
ATGCATTCAACGCAGGAGGT+AGG + chr7_3:27915181-27915200 None:intergenic 50.0%
ATGTGCCAAGAGGGATCGAT+TGG + chr7_3:27915221-27915240 None:intergenic 50.0%
AAGCCAAGCATGTGCCAAGA+GGG + chr7_3:27915230-27915249 None:intergenic 50.0%
TAAGCCAAGCATGTGCCAAG+AGG + chr7_3:27915231-27915250 None:intergenic 50.0%
TCTTGGCACATGCTTGGCTT+AGG - chr7_3:27915230-27915249 Msa1099370:intron 50.0%
ACCATAGAACTAGTCGGCAG+CGG + chr7_3:27915429-27915448 None:intergenic 50.0%
AACGCGACTTGTCTGCACTT+TGG - chr7_3:27914162-27914181 Msa1099370:intron 50.0%
ACGCGACTTGTCTGCACTTT+GGG - chr7_3:27914163-27914182 Msa1099370:intron 50.0%
CGCCATTTACCTTGCCTTCA+AGG + chr7_3:27914196-27914215 None:intergenic 50.0%
CGTCATTGACCACGACTTTC+GGG - chr7_3:27914745-27914764 Msa1099370:three_prime_UTR 50.0%
CTTCTCGATGGCAGAATCTG+AGG - chr7_3:27915126-27915145 Msa1099370:intron 50.0%
TGCATTCAACGCAGGAGGTA+GGG + chr7_3:27915180-27915199 None:intergenic 50.0%
ATGCATTCAACGCAGGAGGT+AGG + chr7_3:27915181-27915200 None:intergenic 50.0%
ATGTGCCAAGAGGGATCGAT+TGG + chr7_3:27915221-27915240 None:intergenic 50.0%
AAGCCAAGCATGTGCCAAGA+GGG + chr7_3:27915230-27915249 None:intergenic 50.0%
TAAGCCAAGCATGTGCCAAG+AGG + chr7_3:27915231-27915250 None:intergenic 50.0%
TCTTGGCACATGCTTGGCTT+AGG - chr7_3:27915230-27915249 Msa1099370:intron 50.0%
ACCATAGAACTAGTCGGCAG+CGG + chr7_3:27915429-27915448 None:intergenic 50.0%
TGGACCCTGATGAGTGTGCA+TGG - chr7_3:27914309-27914328 Msa1099370:three_prime_UTR 55.0%
GGACCCTGATGAGTGTGCAT+GGG - chr7_3:27914310-27914329 Msa1099370:three_prime_UTR 55.0%
ACGCCCATGCACACTCATCA+GGG + chr7_3:27914316-27914335 None:intergenic 55.0%
TACGCCCATGCACACTCATC+AGG + chr7_3:27914317-27914336 None:intergenic 55.0%
GATGAGTGTGCATGGGCGTA+TGG - chr7_3:27914317-27914336 Msa1099370:three_prime_UTR 55.0%
GATCCCTCTTGGCACATGCT+TGG - chr7_3:27915224-27915243 Msa1099370:intron 55.0%
ACAACGGCCAGTCAAAACCC+TGG - chr7_3:27915306-27915325 Msa1099370:intron 55.0%
!! CGGCAGCGGACTATGATTCT+TGG + chr7_3:27915415-27915434 None:intergenic 55.0%
!! TCCGCTGCCGACTAGTTCTA+TGG - chr7_3:27915425-27915444 Msa1099370:intron 55.0%
TGGACCCTGATGAGTGTGCA+TGG - chr7_3:27914309-27914328 Msa1099370:three_prime_UTR 55.0%
GGACCCTGATGAGTGTGCAT+GGG - chr7_3:27914310-27914329 Msa1099370:three_prime_UTR 55.0%
ACGCCCATGCACACTCATCA+GGG + chr7_3:27914316-27914335 None:intergenic 55.0%
TACGCCCATGCACACTCATC+AGG + chr7_3:27914317-27914336 None:intergenic 55.0%
GATGAGTGTGCATGGGCGTA+TGG - chr7_3:27914317-27914336 Msa1099370:three_prime_UTR 55.0%
GATCCCTCTTGGCACATGCT+TGG - chr7_3:27915224-27915243 Msa1099370:intron 55.0%
ACAACGGCCAGTCAAAACCC+TGG - chr7_3:27915306-27915325 Msa1099370:intron 55.0%
!! CGGCAGCGGACTATGATTCT+TGG + chr7_3:27915415-27915434 None:intergenic 55.0%
!! TCCGCTGCCGACTAGTTCTA+TGG - chr7_3:27915425-27915444 Msa1099370:intron 55.0%
AGGCAAGGTAAATGGCGCCG+TGG - chr7_3:27914199-27914218 Msa1099370:three_prime_UTR 60.0%
AGGCAAGGTAAATGGCGCCG+TGG - chr7_3:27914199-27914218 Msa1099370:three_prime_UTR 60.0%
GGCGCCGTGGAAACTTGCAG+AGG - chr7_3:27914212-27914231 Msa1099370:three_prime_UTR 65.0%
GGCGCCGTGGAAACTTGCAG+AGG - chr7_3:27914212-27914231 Msa1099370:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 27914089 27916110 27914089 ID=Msa1099370;Name=Msa1099370
chr7_3 mRNA 27914089 27916110 27914089 ID=Msa1099370-mRNA-1;Parent=Msa1099370;Name=Msa1099370-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|1|0.66|1|0.5|0.33|3|652|202
chr7_3 exon 27914089 27914137 27914089 ID=Msa1099370-mRNA-1:exon:5877;Parent=Msa1099370-mRNA-1
chr7_3 exon 27914172 27915059 27914172 ID=Msa1099370-mRNA-1:exon:5876;Parent=Msa1099370-mRNA-1
chr7_3 exon 27915787 27916110 27915787 ID=Msa1099370-mRNA-1:exon:5875;Parent=Msa1099370-mRNA-1
chr7_3 CDS 27915787 27916110 27915787 ID=Msa1099370-mRNA-1:cds;Parent=Msa1099370-mRNA-1
chr7_3 CDS 27914775 27915059 27914775 ID=Msa1099370-mRNA-1:cds;Parent=Msa1099370-mRNA-1
chr7_3 three_prime_UTR 27914172 27914774 27914172 ID=Msa1099370-mRNA-1:three_prime_utr;Parent=Msa1099370-mRNA-1
chr7_3 three_prime_UTR 27914089 27914137 27914089 ID=Msa1099370-mRNA-1:three_prime_utr;Parent=Msa1099370-mRNA-1
Gene Sequence

>Msa1099370

ATGTCTTCTTTTGTCAAACAACTTTTCCCAAACCTTGACAAGGTAGTCTTTTTGGACGACGATGTGGTGATTCAACGCGACTTGTCTGCACTTTGGGAAATTGACCTTGAAGGCAAGGTAAATGGCGCCGTGGAAACTTGCAGAGGAGAAGATGATTGGGTAATGTCTAAACATTTTAGGAACTACTTCAATTTTTCTCATCCCCTCATATCAAATCATTTGGACCCTGATGAGTGTGCATGGGCGTATGGAATGAATATCTTCGATCTTGGTGCATGGAGAAGAACTAATATAAGAGAAACTTATCATTCCTGGCTTAAAGAGAATCTGAGGTCAAGCCTAACAATGTGGAAGCTAGGAACCCTACCTCCTGCGTTGAATGCATTTAAAGGTCACGTTCATCCAATCGATCCCTCTTGGCACATGCTTGGCTTAGGCTATCAGAGCAATACGACTATTAAGAACGTGAAAAAGGCCGCTGTTATTCACTACAACGGCCAGTCAAAACCCTGGTTACCAATTGGCTTTGAACATCTTCGGCCATTTTGGACCAAGTATGTCAATTATTCAAATGATTTTGTGAAGAACTGTCATATCCAAGAATCATAG
Protein sequence

>Msa1099370

MSSFVKQLFPNLDKVVFLDDDVVIQRDLSALWEIDLEGKVNGAVETCRGEDDWVMSKHFRNYFNFSHPLISNHLDPDECAWAYGMNIFDLGAWRRTNIRETYHSWLKENLRSSLTMWKLGTLPPALNAFKGHVHPIDPSWHMLGLGYQSNTTIKNVKKAAVIHYNGQSKPWLPIGFEHLRPFWTKYVNYSNDFVKNCHIQES*