Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099630 | XP_003621340.1 | 94.813 | 347 | 18 | 0 | 1 | 347 | 29 | 375 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099630 | sp|P93324|CHOMT_MEDSA | 60.057 | 348 | 134 | 3 | 1 | 347 | 29 | 372 | 1.01e-151 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099630 | G7L368 | 94.813 | 347 | 18 | 0 | 1 | 347 | 29 | 375 | 0.0 | 680 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1007940 | Msa1099630 | 0.892353 | 1.716590e-74 | -8.615850e-47 |
| Msa1007950 | Msa1099630 | 0.896069 | 5.251137e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099630 | MtrunA17_Chr7g0218271 | 94.813 | 347 | 18 | 0 | 1 | 347 | 29 | 375 | 0.0 | 680 |
| Msa1099630 | MtrunA17_Chr7g0218301 | 92.795 | 347 | 25 | 0 | 1 | 347 | 29 | 375 | 0.0 | 664 |
| Msa1099630 | MtrunA17_Chr7g0218261 | 76.657 | 347 | 75 | 3 | 1 | 347 | 28 | 368 | 0.0 | 543 |
| Msa1099630 | MtrunA17_Chr7g0218211 | 70.893 | 347 | 96 | 2 | 1 | 347 | 28 | 369 | 0.0 | 514 |
| Msa1099630 | MtrunA17_Chr7g0218131 | 70.605 | 347 | 97 | 2 | 1 | 347 | 29 | 370 | 0.0 | 509 |
| Msa1099630 | MtrunA17_Chr7g0218181 | 66.954 | 348 | 105 | 3 | 1 | 347 | 29 | 367 | 4.68e-170 | 478 |
| Msa1099630 | MtrunA17_Chr2g0307521 | 64.265 | 347 | 118 | 2 | 1 | 347 | 23 | 363 | 1.07e-167 | 471 |
| Msa1099630 | MtrunA17_Chr1g0200491 | 60.345 | 348 | 133 | 3 | 1 | 347 | 29 | 372 | 8.75e-154 | 436 |
| Msa1099630 | MtrunA17_Chr3g0085211 | 56.196 | 347 | 145 | 3 | 1 | 347 | 31 | 370 | 1.88e-135 | 390 |
| Msa1099630 | MtrunA17_Chr3g0085201 | 56.891 | 341 | 140 | 3 | 7 | 347 | 24 | 357 | 5.39e-135 | 388 |
| Msa1099630 | MtrunA17_Chr1g0163601 | 51.576 | 349 | 163 | 5 | 1 | 347 | 26 | 370 | 1.40e-124 | 362 |
| Msa1099630 | MtrunA17_Chr1g0163611 | 51.289 | 349 | 164 | 5 | 1 | 347 | 26 | 370 | 8.00e-123 | 358 |
| Msa1099630 | MtrunA17_Chr1g0163621 | 53.295 | 349 | 157 | 5 | 1 | 347 | 40 | 384 | 7.77e-122 | 356 |
| Msa1099630 | MtrunA17_Chr3g0128011 | 45.845 | 349 | 178 | 7 | 1 | 347 | 78 | 417 | 6.52e-98 | 296 |
| Msa1099630 | MtrunA17_Chr5g0448091 | 43.824 | 340 | 181 | 6 | 10 | 347 | 32 | 363 | 1.33e-91 | 278 |
| Msa1099630 | MtrunA17_Chr7g0276401 | 43.931 | 346 | 184 | 7 | 3 | 347 | 39 | 375 | 1.33e-87 | 268 |
| Msa1099630 | MtrunA17_Chr8g0367441 | 42.165 | 351 | 186 | 9 | 3 | 347 | 38 | 377 | 4.96e-84 | 259 |
| Msa1099630 | MtrunA17_Chr8g0367451 | 41.834 | 349 | 190 | 8 | 3 | 347 | 37 | 376 | 1.19e-82 | 255 |
| Msa1099630 | MtrunA17_Chr7g0276411 | 40.974 | 349 | 193 | 8 | 3 | 347 | 23 | 362 | 7.21e-81 | 250 |
| Msa1099630 | MtrunA17_Chr8g0367501 | 41.329 | 346 | 190 | 8 | 7 | 347 | 28 | 365 | 2.59e-79 | 248 |
| Msa1099630 | MtrunA17_Chr8g0367491 | 39.828 | 349 | 197 | 8 | 3 | 347 | 37 | 376 | 8.63e-79 | 246 |
| Msa1099630 | MtrunA17_Chr8g0345851 | 47.529 | 263 | 134 | 4 | 86 | 347 | 31 | 290 | 4.68e-75 | 233 |
| Msa1099630 | MtrunA17_Chr8g0367381 | 42.089 | 316 | 154 | 7 | 3 | 315 | 38 | 327 | 1.45e-72 | 228 |
| Msa1099630 | MtrunA17_Chr3g0130061 | 36.257 | 342 | 197 | 8 | 3 | 339 | 22 | 347 | 1.44e-59 | 195 |
| Msa1099630 | MtrunA17_Chr2g0314271 | 35.542 | 332 | 197 | 8 | 5 | 331 | 20 | 339 | 3.81e-59 | 194 |
| Msa1099630 | MtrunA17_Chr3g0130011 | 36.709 | 316 | 184 | 7 | 38 | 347 | 53 | 358 | 4.13e-57 | 189 |
| Msa1099630 | MtrunA17_Chr3g0121301 | 35.276 | 326 | 191 | 9 | 11 | 332 | 38 | 347 | 2.08e-51 | 174 |
| Msa1099630 | MtrunA17_Chr4g0021981 | 35.866 | 329 | 186 | 12 | 13 | 333 | 44 | 355 | 5.56e-49 | 168 |
| Msa1099630 | MtrunA17_Chr1g0188391 | 29.938 | 324 | 214 | 5 | 13 | 332 | 33 | 347 | 8.97e-48 | 165 |
| Msa1099630 | MtrunA17_Chr4g0022021 | 31.765 | 340 | 210 | 11 | 13 | 346 | 44 | 367 | 1.87e-47 | 164 |
| Msa1099630 | MtrunA17_Chr1g0188371 | 30.864 | 324 | 204 | 7 | 10 | 326 | 30 | 340 | 8.14e-47 | 162 |
| Msa1099630 | MtrunA17_Chr6g0482291 | 42.703 | 185 | 96 | 3 | 164 | 347 | 1 | 176 | 3.53e-46 | 155 |
| Msa1099630 | MtrunA17_Chr5g0432251 | 31.095 | 283 | 176 | 8 | 61 | 333 | 73 | 346 | 6.91e-44 | 154 |
| Msa1099630 | MtrunA17_Chr4g0014561 | 32.059 | 340 | 212 | 8 | 12 | 342 | 32 | 361 | 6.22e-43 | 152 |
| Msa1099630 | MtrunA17_Chr4g0014681 | 31.765 | 340 | 213 | 8 | 12 | 342 | 32 | 361 | 5.79e-42 | 149 |
| Msa1099630 | MtrunA17_Chr5g0432301 | 32.806 | 253 | 158 | 6 | 103 | 346 | 110 | 359 | 9.66e-42 | 149 |
| Msa1099630 | MtrunA17_Chr4g0046531 | 28.947 | 342 | 222 | 7 | 10 | 346 | 392 | 717 | 1.59e-41 | 154 |
| Msa1099630 | MtrunA17_Chr4g0046531 | 29.573 | 328 | 211 | 7 | 10 | 332 | 30 | 342 | 1.40e-40 | 151 |
| Msa1099630 | MtrunA17_Chr7g0223241 | 28.406 | 345 | 210 | 10 | 10 | 345 | 29 | 345 | 4.02e-41 | 147 |
| Msa1099630 | MtrunA17_Chr7g0219161 | 29.391 | 279 | 190 | 4 | 57 | 332 | 69 | 343 | 6.82e-41 | 147 |
| Msa1099630 | MtrunA17_Chr4g0014641 | 30.588 | 340 | 217 | 8 | 12 | 342 | 32 | 361 | 2.31e-40 | 145 |
| Msa1099630 | MtrunA17_Chr7g0223231 | 27.434 | 339 | 221 | 8 | 10 | 345 | 29 | 345 | 5.26e-40 | 144 |
| Msa1099630 | MtrunA17_Chr5g0432241 | 32.000 | 250 | 159 | 5 | 103 | 345 | 110 | 355 | 6.50e-40 | 144 |
| Msa1099630 | MtrunA17_Chr5g0432211 | 33.036 | 224 | 141 | 4 | 117 | 333 | 111 | 332 | 8.25e-39 | 140 |
| Msa1099630 | MtrunA17_Chr7g0219141 | 27.273 | 341 | 224 | 9 | 13 | 346 | 33 | 356 | 1.32e-38 | 140 |
| Msa1099630 | MtrunA17_Chr4g0040621 | 36.224 | 196 | 121 | 2 | 142 | 333 | 161 | 356 | 2.38e-36 | 135 |
| Msa1099630 | MtrunA17_Chr4g0046361 | 28.955 | 335 | 219 | 8 | 6 | 333 | 26 | 348 | 3.49e-36 | 134 |
| Msa1099630 | MtrunA17_Chr4g0046341 | 30.060 | 336 | 217 | 7 | 6 | 333 | 26 | 351 | 4.74e-36 | 134 |
| Msa1099630 | MtrunA17_Chr8g0367401 | 52.727 | 110 | 52 | 0 | 141 | 250 | 2 | 111 | 2.02e-34 | 123 |
| Msa1099630 | MtrunA17_Chr1g0170941 | 72.368 | 76 | 21 | 0 | 172 | 247 | 1 | 76 | 2.15e-32 | 115 |
| Msa1099630 | MtrunA17_Chr5g0432261 | 35.119 | 168 | 105 | 2 | 182 | 346 | 160 | 326 | 4.27e-32 | 122 |
| Msa1099630 | MtrunA17_Chr4g0014661 | 29.278 | 263 | 168 | 6 | 12 | 271 | 32 | 279 | 4.82e-29 | 115 |
| Msa1099630 | MtrunA17_Chr4g0014591 | 29.008 | 262 | 168 | 6 | 12 | 270 | 32 | 278 | 1.54e-27 | 110 |
| Msa1099630 | MtrunA17_Chr8g0367421 | 42.727 | 110 | 46 | 1 | 141 | 250 | 2 | 94 | 1.28e-22 | 91.7 |
| Msa1099630 | MtrunA17_Chr8g0367461 | 39.823 | 113 | 66 | 2 | 236 | 347 | 1 | 112 | 8.17e-22 | 89.0 |
| Msa1099630 | MtrunA17_Chr4g0014601 | 27.869 | 244 | 158 | 7 | 12 | 252 | 32 | 260 | 1.50e-21 | 92.4 |
| Msa1099630 | MtrunA17_Chr1g0170931 | 48.980 | 98 | 48 | 2 | 1 | 98 | 9 | 104 | 2.63e-21 | 88.2 |
| Msa1099630 | MtrunA17_Chr6g0476581 | 67.164 | 67 | 15 | 2 | 1 | 67 | 31 | 90 | 9.14e-21 | 86.3 |
| Msa1099630 | MtrunA17_Chr7g0219171 | 32.836 | 134 | 83 | 4 | 217 | 346 | 117 | 247 | 5.76e-19 | 85.1 |
| Msa1099630 | MtrunA17_Chr1g0170951 | 47.945 | 73 | 38 | 0 | 258 | 330 | 17 | 89 | 9.13e-18 | 77.8 |
| Msa1099630 | MtrunA17_Chr8g0367391 | 41.000 | 100 | 57 | 2 | 249 | 347 | 36 | 134 | 4.31e-17 | 77.0 |
| Msa1099630 | MtrunA17_Chr8g0367471 | 50.000 | 68 | 34 | 0 | 164 | 231 | 1 | 68 | 4.96e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099630 | AT5G54160.1 | 46.991 | 349 | 172 | 7 | 1 | 347 | 24 | 361 | 4.04e-99 | 297 |
| Msa1099630 | AT1G77520.1 | 40.909 | 352 | 195 | 6 | 3 | 347 | 36 | 381 | 3.11e-90 | 275 |
| Msa1099630 | AT1G51990.1 | 39.589 | 341 | 194 | 8 | 10 | 346 | 29 | 361 | 3.05e-80 | 249 |
| Msa1099630 | AT1G51990.2 | 39.003 | 341 | 196 | 8 | 10 | 346 | 29 | 361 | 2.04e-79 | 247 |
| Msa1099630 | AT1G63140.2 | 40.625 | 352 | 196 | 9 | 3 | 347 | 36 | 381 | 3.37e-78 | 244 |
| Msa1099630 | AT1G63140.4 | 40.625 | 352 | 196 | 9 | 3 | 347 | 56 | 401 | 5.72e-78 | 244 |
| Msa1099630 | AT1G77530.1 | 41.477 | 352 | 193 | 8 | 3 | 347 | 36 | 381 | 1.67e-76 | 240 |
| Msa1099630 | AT1G21100.1 | 40.000 | 340 | 192 | 9 | 3 | 337 | 32 | 364 | 4.07e-72 | 229 |
| Msa1099630 | AT1G21130.1 | 40.000 | 340 | 192 | 9 | 3 | 337 | 32 | 364 | 1.33e-71 | 227 |
| Msa1099630 | AT1G21110.1 | 40.294 | 340 | 191 | 9 | 3 | 337 | 32 | 364 | 6.12e-71 | 226 |
| Msa1099630 | AT1G33030.1 | 38.551 | 345 | 198 | 7 | 1 | 340 | 11 | 346 | 1.35e-70 | 224 |
| Msa1099630 | AT1G21120.1 | 39.706 | 340 | 193 | 9 | 3 | 337 | 32 | 364 | 7.02e-70 | 223 |
| Msa1099630 | AT5G53810.1 | 37.892 | 351 | 194 | 10 | 10 | 347 | 39 | 378 | 4.50e-69 | 221 |
| Msa1099630 | AT1G21120.2 | 39.412 | 340 | 194 | 9 | 3 | 337 | 80 | 412 | 4.89e-69 | 222 |
| Msa1099630 | AT1G76790.1 | 38.810 | 353 | 199 | 9 | 3 | 347 | 22 | 365 | 1.81e-68 | 219 |
| Msa1099630 | AT3G53140.1 | 33.828 | 337 | 208 | 6 | 1 | 331 | 17 | 344 | 2.65e-61 | 200 |
| Msa1099630 | AT1G62900.1 | 44.608 | 204 | 110 | 3 | 146 | 347 | 3 | 205 | 1.14e-57 | 186 |
| Msa1099630 | AT5G37170.1 | 37.304 | 319 | 159 | 9 | 37 | 347 | 49 | 334 | 5.55e-54 | 181 |
| Msa1099630 | AT5G37170.2 | 44.949 | 198 | 105 | 4 | 153 | 347 | 38 | 234 | 5.40e-52 | 172 |
| Msa1099630 | AT1G63140.1 | 40.711 | 253 | 140 | 6 | 3 | 250 | 56 | 303 | 2.71e-48 | 165 |
| Msa1099630 | AT5G37170.3 | 44.920 | 187 | 99 | 4 | 164 | 347 | 1 | 186 | 2.95e-48 | 161 |
| Msa1099630 | AT1G33030.2 | 37.008 | 254 | 149 | 5 | 1 | 252 | 11 | 255 | 7.07e-45 | 155 |
| Msa1099630 | AT1G33030.3 | 36.364 | 264 | 155 | 6 | 1 | 260 | 11 | 265 | 1.04e-44 | 155 |
| Msa1099630 | AT1G21130.2 | 40.239 | 251 | 140 | 7 | 3 | 250 | 32 | 275 | 1.99e-42 | 149 |
| Msa1099630 | AT1G77530.2 | 41.558 | 231 | 125 | 5 | 3 | 228 | 36 | 261 | 4.01e-41 | 145 |
| Msa1099630 | AT1G63140.3 | 38.655 | 238 | 136 | 6 | 3 | 235 | 56 | 288 | 1.10e-37 | 137 |
| Msa1099630 | AT4G35150.1 | 34.483 | 203 | 123 | 3 | 140 | 332 | 108 | 310 | 2.88e-37 | 136 |
| Msa1099630 | AT4G35160.1 | 30.000 | 340 | 204 | 11 | 11 | 332 | 44 | 367 | 5.09e-37 | 137 |
Find 70 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAAGAATTTGAGAGTT+TGG | 0.200431 | 7_3:+28384454 | Msa1099630:CDS |
| CGACAAACAACTTGGAATTT+AGG | 0.243482 | 7_3:-28384494 | None:intergenic |
| TTTGTTGATTCAAGATCTTC+TGG | 0.247585 | 7_3:-28384365 | None:intergenic |
| AGCATACGGTCAAGCCTATT+TGG | 0.278310 | 7_3:-28382854 | None:intergenic |
| TTGAATCACCCAGCTTTCTT+AGG | 0.281972 | 7_3:+28383028 | Msa1099630:CDS |
| TCAAAAGAATTTGAGAGTTT+GGG | 0.317581 | 7_3:+28384455 | Msa1099630:CDS |
| CATATCCTTTGTATATTTCA+AGG | 0.318611 | 7_3:-28383660 | None:intergenic |
| AGCATTATAGCATCTCCTTC+TGG | 0.323700 | 7_3:-28383959 | None:intergenic |
| TGTAGCTTGTGTTCCATAAT+TGG | 0.338384 | 7_3:+28384255 | Msa1099630:intron |
| TGAAAACGAGGATAATTATA+TGG | 0.346391 | 7_3:+28382988 | Msa1099630:CDS |
| GAGAGTTTGGGTAAACAATC+TGG | 0.372091 | 7_3:+28384467 | Msa1099630:CDS |
| AAAACTCCGACTTACCAAAT+AGG | 0.375982 | 7_3:+28382840 | Msa1099630:CDS |
| AACGTATTCGAGAAAGTTCA+TGG | 0.380926 | 7_3:+28383541 | Msa1099630:CDS |
| TTCTCGAATACGTTTATCTC+TGG | 0.389709 | 7_3:-28383532 | None:intergenic |
| CACAAAGCTTTGCCTTCAAA+TGG | 0.393394 | 7_3:+28384314 | Msa1099630:CDS |
| ATAATGACTTTACCATTTGA+AGG | 0.398844 | 7_3:-28384326 | None:intergenic |
| TGAAATATACAAAGGATATG+AGG | 0.400826 | 7_3:+28383663 | Msa1099630:CDS |
| TTCTCAAAGTATTCATAGAT+AGG | 0.406331 | 7_3:-28383568 | None:intergenic |
| AACTGCAGGAAACACCATAT+TGG | 0.407144 | 7_3:-28382702 | None:intergenic |
| CATGATTATAGCTTCCAATA+TGG | 0.408040 | 7_3:+28382688 | None:intergenic |
| TGTCGTGCTTTCTCCATCCT+TGG | 0.409600 | 7_3:+28384512 | Msa1099630:CDS |
| ATCATTGGTCCGAGTGGAAA+CGG | 0.460804 | 7_3:-28382906 | None:intergenic |
| GTGATATAGGTCGAATTTGA+AGG | 0.465211 | 7_3:+28383495 | Msa1099630:intron |
| TTTCTCCATCCTTGGTGTGA+TGG | 0.466015 | 7_3:+28384520 | Msa1099630:CDS |
| CTTGTTTGATATCATTGCTA+AGG | 0.474167 | 7_3:+28382748 | Msa1099630:CDS |
| TACCACACTCCTAAGAAAGC+TGG | 0.484096 | 7_3:-28383037 | None:intergenic |
| CACCATGCTACCATCATCAT+TGG | 0.485235 | 7_3:-28382921 | None:intergenic |
| GTTGATGTAGGAGGTGGAAA+TGG | 0.497071 | 7_3:+28383700 | Msa1099630:CDS |
| GTCTCCTGTCCGTTTCCACT+CGG | 0.503554 | 7_3:+28382897 | Msa1099630:CDS |
| ATATCACATGAAAACAATGT+TGG | 0.508642 | 7_3:+28382773 | Msa1099630:CDS |
| AGAAAGCACGACAAACAACT+TGG | 0.515962 | 7_3:-28384502 | None:intergenic |
| CTGTGCTTGCTTGCTAGCCA+CGG | 0.521304 | 7_3:+28382875 | Msa1099630:CDS |
| GTTTATCACAGCTGGTGGTA+AGG | 0.522095 | 7_3:+28384424 | Msa1099630:CDS |
| AAATGGTAAAGTCATTATTG+TGG | 0.527665 | 7_3:+28384331 | Msa1099630:CDS |
| TAGCAAGCAAGCACAGCATA+CGG | 0.535722 | 7_3:-28382868 | None:intergenic |
| AACATGATGTTTATCACAGC+TGG | 0.539235 | 7_3:+28384416 | Msa1099630:CDS |
| AAGTTCCATCACACCAAGGA+TGG | 0.539267 | 7_3:-28384525 | None:intergenic |
| GGTGCATGTTCAATCACTTG+TGG | 0.542683 | 7_3:-28383784 | None:intergenic |
| GAACATGCACCACCCTCTCC+AGG | 0.544120 | 7_3:+28383796 | Msa1099630:CDS |
| CATATTGGAAGCTATAATCA+TGG | 0.546612 | 7_3:-28382687 | None:intergenic |
| GTCAAGCCTATTTGGTAAGT+CGG | 0.546762 | 7_3:-28382846 | None:intergenic |
| GTTTATGCAATCACACCTCC+TGG | 0.548500 | 7_3:+28382947 | Msa1099630:CDS |
| GTGCATGTTCAATCACTTGT+GGG | 0.549965 | 7_3:-28383783 | None:intergenic |
| GAAATATACAAAGGATATGA+GGG | 0.554252 | 7_3:+28383664 | Msa1099630:CDS |
| ACCACACTCCTAAGAAAGCT+GGG | 0.554693 | 7_3:-28383036 | None:intergenic |
| TTAGGGATCGAACATGTTGG+AGG | 0.564879 | 7_3:+28383917 | Msa1099630:intron |
| TGATGGACAAAGTATTTACC+AGG | 0.566769 | 7_3:-28382965 | None:intergenic |
| TGGTCCGAGTGGAAACGGAC+AGG | 0.566921 | 7_3:-28382901 | None:intergenic |
| TATTTAGGGATCGAACATGT+TGG | 0.571558 | 7_3:+28383914 | Msa1099630:intron |
| ATATCAACACTGGTTGATGT+AGG | 0.573750 | 7_3:+28383688 | Msa1099630:CDS |
| ACACTGGTTGATGTAGGAGG+TGG | 0.577123 | 7_3:+28383694 | Msa1099630:CDS |
| TCCACTCGGACCAATGATGA+TGG | 0.585835 | 7_3:+28382911 | Msa1099630:CDS |
| AGGAGATGCTATAATGCTCA+AGG | 0.599170 | 7_3:+28383964 | Msa1099630:CDS |
| ACCCAGCTTTCTTAGGAGTG+TGG | 0.599760 | 7_3:+28383035 | Msa1099630:CDS |
| GATCAAACAATAACCTGGAG+AGG | 0.602921 | 7_3:-28383809 | None:intergenic |
| ATGTTTGAATGTGTTCCAGA+AGG | 0.610554 | 7_3:+28383944 | Msa1099630:CDS |
| ACCATCATCATTGGTCCGAG+TGG | 0.615333 | 7_3:-28382912 | None:intergenic |
| AAACAATGTTGGATTTGTGT+CGG | 0.622769 | 7_3:+28382784 | Msa1099630:CDS |
| ATAATCCTTGAAATATACAA+AGG | 0.628176 | 7_3:+28383655 | Msa1099630:CDS |
| AAACAATAACCTGGAGAGGG+TGG | 0.629227 | 7_3:-28383805 | None:intergenic |
| TCAACACTGGTTGATGTAGG+AGG | 0.630452 | 7_3:+28383691 | Msa1099630:CDS |
| ATCAAACAATAACCTGGAGA+GGG | 0.630694 | 7_3:-28383808 | None:intergenic |
| GCTTGTGTTCCATAATTGGT+CGG | 0.631020 | 7_3:+28384259 | Msa1099630:intron |
| CTTTGTCCATCATGAAAACG+AGG | 0.635174 | 7_3:+28382976 | Msa1099630:CDS |
| ATGATGTTTATCACAGCTGG+TGG | 0.648385 | 7_3:+28384419 | Msa1099630:CDS |
| GACCAATGATGATGGTAGCA+TGG | 0.656306 | 7_3:+28382919 | Msa1099630:CDS |
| ATATGAGGGAATATCAACAC+TGG | 0.673093 | 7_3:+28383678 | Msa1099630:CDS |
| TGGAAACGGACAGGAGACCG+TGG | 0.690766 | 7_3:-28382892 | None:intergenic |
| TGTAAAGTTCCATCACACCA+AGG | 0.691403 | 7_3:-28384529 | None:intergenic |
| TGGACAAAGTATTTACCAGG+AGG | 0.738714 | 7_3:-28382962 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAACTATATTAAGTTA+TGG | - | chr7_3:28383072-28383091 | None:intergenic | 10.0% |
| !!! | AATATTGTCAAATTTTATTT+AGG | + | chr7_3:28383899-28383918 | Msa1099630:intron | 10.0% |
| !!! | ATATTGTCAAATTTTATTTA+GGG | + | chr7_3:28383900-28383919 | Msa1099630:intron | 10.0% |
| !! | TAAATAACTATATTAAGTTA+TGG | - | chr7_3:28383072-28383091 | None:intergenic | 10.0% |
| !!! | AATATTGTCAAATTTTATTT+AGG | + | chr7_3:28383899-28383918 | Msa1099630:intron | 10.0% |
| !!! | ATATTGTCAAATTTTATTTA+GGG | + | chr7_3:28383900-28383919 | Msa1099630:intron | 10.0% |
| !! | ATGAATTCAAATGATAATAT+AGG | + | chr7_3:28383274-28383293 | Msa1099630:intron | 15.0% |
| !! | TCGAATAAATTACATATTAT+CGG | - | chr7_3:28383366-28383385 | None:intergenic | 15.0% |
| !! | TCAAATAATCTTATATATAG+TGG | - | chr7_3:28383402-28383421 | None:intergenic | 15.0% |
| !!! | AAAAATCATTTTTGTGATAT+AGG | + | chr7_3:28383482-28383501 | Msa1099630:intron | 15.0% |
| !! | TTAATGGCATTTATATATAA+AGG | - | chr7_3:28384140-28384159 | None:intergenic | 15.0% |
| !! | ATGAATTCAAATGATAATAT+AGG | + | chr7_3:28383274-28383293 | Msa1099630:intron | 15.0% |
| !! | TCGAATAAATTACATATTAT+CGG | - | chr7_3:28383366-28383385 | None:intergenic | 15.0% |
| !! | TCAAATAATCTTATATATAG+TGG | - | chr7_3:28383402-28383421 | None:intergenic | 15.0% |
| !!! | AAAAATCATTTTTGTGATAT+AGG | + | chr7_3:28383482-28383501 | Msa1099630:intron | 15.0% |
| !! | TTAATGGCATTTATATATAA+AGG | - | chr7_3:28384140-28384159 | None:intergenic | 15.0% |
| !! | AATAAGATTAAATAGTATGC+TGG | + | chr7_3:28383096-28383115 | Msa1099630:intron | 20.0% |
| !! | ATAATCCTTGAAATATACAA+AGG | + | chr7_3:28383655-28383674 | Msa1099630:CDS | 20.0% |
| !!! | AAATTGATTGCTTTTATTGA+TGG | - | chr7_3:28383757-28383776 | None:intergenic | 20.0% |
| !! | ACATTCAAAACAAATAATCT+TGG | - | chr7_3:28383866-28383885 | None:intergenic | 20.0% |
| !! | AATAAGATTAAATAGTATGC+TGG | + | chr7_3:28383096-28383115 | Msa1099630:intron | 20.0% |
| !! | ATAATCCTTGAAATATACAA+AGG | + | chr7_3:28383655-28383674 | Msa1099630:CDS | 20.0% |
| !!! | AAATTGATTGCTTTTATTGA+TGG | - | chr7_3:28383757-28383776 | None:intergenic | 20.0% |
| !! | ACATTCAAAACAAATAATCT+TGG | - | chr7_3:28383866-28383885 | None:intergenic | 20.0% |
| ! | ATATCACATGAAAACAATGT+TGG | + | chr7_3:28382773-28382792 | Msa1099630:CDS | 25.0% |
| ! | TGAAAACGAGGATAATTATA+TGG | + | chr7_3:28382988-28383007 | Msa1099630:CDS | 25.0% |
| !!! | GCTATTTGATCGTTTATTTT+CGG | - | chr7_3:28383181-28383200 | None:intergenic | 25.0% |
| ! | CTTCAATTTCACATCATATA+TGG | - | chr7_3:28383244-28383263 | None:intergenic | 25.0% |
| !! | CGAGTACAATTTTATAAGTT+TGG | - | chr7_3:28383300-28383319 | None:intergenic | 25.0% |
| ! | CATATTATCGGTCATAATAA+AGG | - | chr7_3:28383354-28383373 | None:intergenic | 25.0% |
| !! | TTCTCAAAGTATTCATAGAT+AGG | - | chr7_3:28383571-28383590 | None:intergenic | 25.0% |
| ! | CATATCCTTTGTATATTTCA+AGG | - | chr7_3:28383663-28383682 | None:intergenic | 25.0% |
| ! | TGAAATATACAAAGGATATG+AGG | + | chr7_3:28383663-28383682 | Msa1099630:CDS | 25.0% |
| ! | GAAATATACAAAGGATATGA+GGG | + | chr7_3:28383664-28383683 | Msa1099630:CDS | 25.0% |
| !!! | TGCTTTTATTGATGGATATT+TGG | - | chr7_3:28383749-28383768 | None:intergenic | 25.0% |
| ! | AACAAATAATCTTGGAAAAG+TGG | - | chr7_3:28383858-28383877 | None:intergenic | 25.0% |
| !! | AAATGATCATCTTCTTTTGA+TGG | + | chr7_3:28384020-28384039 | Msa1099630:intron | 25.0% |
| ! | TGGCATTTATATATAAAGGT+TGG | - | chr7_3:28384136-28384155 | None:intergenic | 25.0% |
| ! | ATAATGACTTTACCATTTGA+AGG | - | chr7_3:28384329-28384348 | None:intergenic | 25.0% |
| ! | AAATGGTAAAGTCATTATTG+TGG | + | chr7_3:28384331-28384350 | Msa1099630:CDS | 25.0% |
| ! | TTCAAAAGAATTTGAGAGTT+TGG | + | chr7_3:28384454-28384473 | Msa1099630:CDS | 25.0% |
| ! | TCAAAAGAATTTGAGAGTTT+GGG | + | chr7_3:28384455-28384474 | Msa1099630:CDS | 25.0% |
| ! | ATATCACATGAAAACAATGT+TGG | + | chr7_3:28382773-28382792 | Msa1099630:CDS | 25.0% |
| ! | TGAAAACGAGGATAATTATA+TGG | + | chr7_3:28382988-28383007 | Msa1099630:CDS | 25.0% |
| !!! | GCTATTTGATCGTTTATTTT+CGG | - | chr7_3:28383181-28383200 | None:intergenic | 25.0% |
| ! | CTTCAATTTCACATCATATA+TGG | - | chr7_3:28383244-28383263 | None:intergenic | 25.0% |
| !! | CGAGTACAATTTTATAAGTT+TGG | - | chr7_3:28383300-28383319 | None:intergenic | 25.0% |
| ! | CATATTATCGGTCATAATAA+AGG | - | chr7_3:28383354-28383373 | None:intergenic | 25.0% |
| !! | TTCTCAAAGTATTCATAGAT+AGG | - | chr7_3:28383571-28383590 | None:intergenic | 25.0% |
| ! | CATATCCTTTGTATATTTCA+AGG | - | chr7_3:28383663-28383682 | None:intergenic | 25.0% |
| ! | TGAAATATACAAAGGATATG+AGG | + | chr7_3:28383663-28383682 | Msa1099630:CDS | 25.0% |
| ! | GAAATATACAAAGGATATGA+GGG | + | chr7_3:28383664-28383683 | Msa1099630:CDS | 25.0% |
| !!! | TGCTTTTATTGATGGATATT+TGG | - | chr7_3:28383749-28383768 | None:intergenic | 25.0% |
| ! | AACAAATAATCTTGGAAAAG+TGG | - | chr7_3:28383858-28383877 | None:intergenic | 25.0% |
| !! | AAATGATCATCTTCTTTTGA+TGG | + | chr7_3:28384020-28384039 | Msa1099630:intron | 25.0% |
| ! | TGGCATTTATATATAAAGGT+TGG | - | chr7_3:28384136-28384155 | None:intergenic | 25.0% |
| ! | ATAATGACTTTACCATTTGA+AGG | - | chr7_3:28384329-28384348 | None:intergenic | 25.0% |
| ! | AAATGGTAAAGTCATTATTG+TGG | + | chr7_3:28384331-28384350 | Msa1099630:CDS | 25.0% |
| ! | TTCAAAAGAATTTGAGAGTT+TGG | + | chr7_3:28384454-28384473 | Msa1099630:CDS | 25.0% |
| ! | TCAAAAGAATTTGAGAGTTT+GGG | + | chr7_3:28384455-28384474 | Msa1099630:CDS | 25.0% |
| CTTGTTTGATATCATTGCTA+AGG | + | chr7_3:28382748-28382767 | Msa1099630:CDS | 30.0% | |
| AAACAATGTTGGATTTGTGT+CGG | + | chr7_3:28382784-28382803 | Msa1099630:CDS | 30.0% | |
| ! | AATTATCCTCGTTTTCATGA+TGG | - | chr7_3:28382985-28383004 | None:intergenic | 30.0% |
| TAATGACGTGTAGATATAAG+TGG | - | chr7_3:28383139-28383158 | None:intergenic | 30.0% | |
| ATAGCCCTAAATGTTTAACT+TGG | + | chr7_3:28383196-28383215 | Msa1099630:intron | 30.0% | |
| GTGTCCAAGTTAAACATTTA+GGG | - | chr7_3:28383203-28383222 | None:intergenic | 30.0% | |
| AGTGTCCAAGTTAAACATTT+AGG | - | chr7_3:28383204-28383223 | None:intergenic | 30.0% | |
| ! | ATTTTTCATCCGACCAATTA+TGG | - | chr7_3:28384271-28384290 | None:intergenic | 30.0% |
| !! | TTTGTTGATTCAAGATCTTC+TGG | - | chr7_3:28384368-28384387 | None:intergenic | 30.0% |
| CTTGTTTGATATCATTGCTA+AGG | + | chr7_3:28382748-28382767 | Msa1099630:CDS | 30.0% | |
| AAACAATGTTGGATTTGTGT+CGG | + | chr7_3:28382784-28382803 | Msa1099630:CDS | 30.0% | |
| ! | AATTATCCTCGTTTTCATGA+TGG | - | chr7_3:28382985-28383004 | None:intergenic | 30.0% |
| TAATGACGTGTAGATATAAG+TGG | - | chr7_3:28383139-28383158 | None:intergenic | 30.0% | |
| ATAGCCCTAAATGTTTAACT+TGG | + | chr7_3:28383196-28383215 | Msa1099630:intron | 30.0% | |
| GTGTCCAAGTTAAACATTTA+GGG | - | chr7_3:28383203-28383222 | None:intergenic | 30.0% | |
| AGTGTCCAAGTTAAACATTT+AGG | - | chr7_3:28383204-28383223 | None:intergenic | 30.0% | |
| ! | ATTTTTCATCCGACCAATTA+TGG | - | chr7_3:28384271-28384290 | None:intergenic | 30.0% |
| !! | TTTGTTGATTCAAGATCTTC+TGG | - | chr7_3:28384368-28384387 | None:intergenic | 30.0% |
| !! | ATTGCAGCTTTAAAAACTGC+AGG | - | chr7_3:28382719-28382738 | None:intergenic | 35.0% |
| !!! | AAGTCGGAGTTTTGAGTTAT+TGG | - | chr7_3:28382833-28382852 | None:intergenic | 35.0% |
| AAAACTCCGACTTACCAAAT+AGG | + | chr7_3:28382840-28382859 | Msa1099630:CDS | 35.0% | |
| ! | TGATGGACAAAGTATTTACC+AGG | - | chr7_3:28382968-28382987 | None:intergenic | 35.0% |
| GTGATATAGGTCGAATTTGA+AGG | + | chr7_3:28383495-28383514 | Msa1099630:intron | 35.0% | |
| TTCTCGAATACGTTTATCTC+TGG | - | chr7_3:28383535-28383554 | None:intergenic | 35.0% | |
| AACGTATTCGAGAAAGTTCA+TGG | + | chr7_3:28383541-28383560 | Msa1099630:CDS | 35.0% | |
| ATATGAGGGAATATCAACAC+TGG | + | chr7_3:28383678-28383697 | Msa1099630:CDS | 35.0% | |
| ! | ATATCAACACTGGTTGATGT+AGG | + | chr7_3:28383688-28383707 | Msa1099630:CDS | 35.0% |
| ATCAAACAATAACCTGGAGA+GGG | - | chr7_3:28383811-28383830 | None:intergenic | 35.0% | |
| GAGATGATCAAACAATAACC+TGG | - | chr7_3:28383817-28383836 | None:intergenic | 35.0% | |
| TATTTAGGGATCGAACATGT+TGG | + | chr7_3:28383914-28383933 | Msa1099630:intron | 35.0% | |
| ATGTTTGAATGTGTTCCAGA+AGG | + | chr7_3:28383944-28383963 | Msa1099630:CDS | 35.0% | |
| ! | TGATGGTGTGTGTGTATATA+TGG | + | chr7_3:28384037-28384056 | Msa1099630:intron | 35.0% |
| GATGGTGTGTGTGTATATAT+GGG | + | chr7_3:28384038-28384057 | Msa1099630:intron | 35.0% | |
| !!! | GGATTGTTATGTTTTCAGGT+TGG | - | chr7_3:28384079-28384098 | None:intergenic | 35.0% |
| TAGACCTCAAGTTAGCAAAA+TGG | - | chr7_3:28384106-28384125 | None:intergenic | 35.0% | |
| ! | TGTAGCTTGTGTTCCATAAT+TGG | + | chr7_3:28384255-28384274 | Msa1099630:intron | 35.0% |
| AACATGATGTTTATCACAGC+TGG | + | chr7_3:28384416-28384435 | Msa1099630:CDS | 35.0% | |
| CGACAAACAACTTGGAATTT+AGG | - | chr7_3:28384497-28384516 | None:intergenic | 35.0% | |
| !! | ATTGCAGCTTTAAAAACTGC+AGG | - | chr7_3:28382719-28382738 | None:intergenic | 35.0% |
| !!! | AAGTCGGAGTTTTGAGTTAT+TGG | - | chr7_3:28382833-28382852 | None:intergenic | 35.0% |
| AAAACTCCGACTTACCAAAT+AGG | + | chr7_3:28382840-28382859 | Msa1099630:CDS | 35.0% | |
| ! | TGATGGACAAAGTATTTACC+AGG | - | chr7_3:28382968-28382987 | None:intergenic | 35.0% |
| GTGATATAGGTCGAATTTGA+AGG | + | chr7_3:28383495-28383514 | Msa1099630:intron | 35.0% | |
| TTCTCGAATACGTTTATCTC+TGG | - | chr7_3:28383535-28383554 | None:intergenic | 35.0% | |
| AACGTATTCGAGAAAGTTCA+TGG | + | chr7_3:28383541-28383560 | Msa1099630:CDS | 35.0% | |
| ATATGAGGGAATATCAACAC+TGG | + | chr7_3:28383678-28383697 | Msa1099630:CDS | 35.0% | |
| ! | ATATCAACACTGGTTGATGT+AGG | + | chr7_3:28383688-28383707 | Msa1099630:CDS | 35.0% |
| ATCAAACAATAACCTGGAGA+GGG | - | chr7_3:28383811-28383830 | None:intergenic | 35.0% | |
| GAGATGATCAAACAATAACC+TGG | - | chr7_3:28383817-28383836 | None:intergenic | 35.0% | |
| TATTTAGGGATCGAACATGT+TGG | + | chr7_3:28383914-28383933 | Msa1099630:intron | 35.0% | |
| ATGTTTGAATGTGTTCCAGA+AGG | + | chr7_3:28383944-28383963 | Msa1099630:CDS | 35.0% | |
| ! | TGATGGTGTGTGTGTATATA+TGG | + | chr7_3:28384037-28384056 | Msa1099630:intron | 35.0% |
| GATGGTGTGTGTGTATATAT+GGG | + | chr7_3:28384038-28384057 | Msa1099630:intron | 35.0% | |
| !!! | GGATTGTTATGTTTTCAGGT+TGG | - | chr7_3:28384079-28384098 | None:intergenic | 35.0% |
| TAGACCTCAAGTTAGCAAAA+TGG | - | chr7_3:28384106-28384125 | None:intergenic | 35.0% | |
| ! | TGTAGCTTGTGTTCCATAAT+TGG | + | chr7_3:28384255-28384274 | Msa1099630:intron | 35.0% |
| AACATGATGTTTATCACAGC+TGG | + | chr7_3:28384416-28384435 | Msa1099630:CDS | 35.0% | |
| CGACAAACAACTTGGAATTT+AGG | - | chr7_3:28384497-28384516 | None:intergenic | 35.0% | |
| AACTGCAGGAAACACCATAT+TGG | - | chr7_3:28382705-28382724 | None:intergenic | 40.0% | |
| GTCAAGCCTATTTGGTAAGT+CGG | - | chr7_3:28382849-28382868 | None:intergenic | 40.0% | |
| ! | TGGACAAAGTATTTACCAGG+AGG | - | chr7_3:28382965-28382984 | None:intergenic | 40.0% |
| CTTTGTCCATCATGAAAACG+AGG | + | chr7_3:28382976-28382995 | Msa1099630:CDS | 40.0% | |
| TTGAATCACCCAGCTTTCTT+AGG | + | chr7_3:28383028-28383047 | Msa1099630:CDS | 40.0% | |
| GTGCATGTTCAATCACTTGT+GGG | - | chr7_3:28383786-28383805 | None:intergenic | 40.0% | |
| GATCAAACAATAACCTGGAG+AGG | - | chr7_3:28383812-28383831 | None:intergenic | 40.0% | |
| AGCATTATAGCATCTCCTTC+TGG | - | chr7_3:28383962-28383981 | None:intergenic | 40.0% | |
| AGGAGATGCTATAATGCTCA+AGG | + | chr7_3:28383964-28383983 | Msa1099630:CDS | 40.0% | |
| GATGCTATAATGCTCAAGGT+TGG | + | chr7_3:28383968-28383987 | Msa1099630:intron | 40.0% | |
| ! | CGGAGGATTGTTATGTTTTC+AGG | - | chr7_3:28384083-28384102 | None:intergenic | 40.0% |
| ACCTCAAGTTAGCAAAATGG+CGG | - | chr7_3:28384103-28384122 | None:intergenic | 40.0% | |
| GCTTGTGTTCCATAATTGGT+CGG | + | chr7_3:28384259-28384278 | Msa1099630:intron | 40.0% | |
| CACAAAGCTTTGCCTTCAAA+TGG | + | chr7_3:28384314-28384333 | Msa1099630:CDS | 40.0% | |
| ATGATGTTTATCACAGCTGG+TGG | + | chr7_3:28384419-28384438 | Msa1099630:CDS | 40.0% | |
| GAGAGTTTGGGTAAACAATC+TGG | + | chr7_3:28384467-28384486 | Msa1099630:CDS | 40.0% | |
| ! | AGAAAGCACGACAAACAACT+TGG | - | chr7_3:28384505-28384524 | None:intergenic | 40.0% |
| TGTAAAGTTCCATCACACCA+AGG | - | chr7_3:28384532-28384551 | None:intergenic | 40.0% | |
| AACTGCAGGAAACACCATAT+TGG | - | chr7_3:28382705-28382724 | None:intergenic | 40.0% | |
| GTCAAGCCTATTTGGTAAGT+CGG | - | chr7_3:28382849-28382868 | None:intergenic | 40.0% | |
| ! | TGGACAAAGTATTTACCAGG+AGG | - | chr7_3:28382965-28382984 | None:intergenic | 40.0% |
| CTTTGTCCATCATGAAAACG+AGG | + | chr7_3:28382976-28382995 | Msa1099630:CDS | 40.0% | |
| TTGAATCACCCAGCTTTCTT+AGG | + | chr7_3:28383028-28383047 | Msa1099630:CDS | 40.0% | |
| GTGCATGTTCAATCACTTGT+GGG | - | chr7_3:28383786-28383805 | None:intergenic | 40.0% | |
| GATCAAACAATAACCTGGAG+AGG | - | chr7_3:28383812-28383831 | None:intergenic | 40.0% | |
| AGCATTATAGCATCTCCTTC+TGG | - | chr7_3:28383962-28383981 | None:intergenic | 40.0% | |
| AGGAGATGCTATAATGCTCA+AGG | + | chr7_3:28383964-28383983 | Msa1099630:CDS | 40.0% | |
| GATGCTATAATGCTCAAGGT+TGG | + | chr7_3:28383968-28383987 | Msa1099630:intron | 40.0% | |
| ! | CGGAGGATTGTTATGTTTTC+AGG | - | chr7_3:28384083-28384102 | None:intergenic | 40.0% |
| ACCTCAAGTTAGCAAAATGG+CGG | - | chr7_3:28384103-28384122 | None:intergenic | 40.0% | |
| GCTTGTGTTCCATAATTGGT+CGG | + | chr7_3:28384259-28384278 | Msa1099630:intron | 40.0% | |
| CACAAAGCTTTGCCTTCAAA+TGG | + | chr7_3:28384314-28384333 | Msa1099630:CDS | 40.0% | |
| ATGATGTTTATCACAGCTGG+TGG | + | chr7_3:28384419-28384438 | Msa1099630:CDS | 40.0% | |
| GAGAGTTTGGGTAAACAATC+TGG | + | chr7_3:28384467-28384486 | Msa1099630:CDS | 40.0% | |
| ! | AGAAAGCACGACAAACAACT+TGG | - | chr7_3:28384505-28384524 | None:intergenic | 40.0% |
| TGTAAAGTTCCATCACACCA+AGG | - | chr7_3:28384532-28384551 | None:intergenic | 40.0% | |
| AGCATACGGTCAAGCCTATT+TGG | - | chr7_3:28382857-28382876 | None:intergenic | 45.0% | |
| TAGCAAGCAAGCACAGCATA+CGG | - | chr7_3:28382871-28382890 | None:intergenic | 45.0% | |
| ATCATTGGTCCGAGTGGAAA+CGG | - | chr7_3:28382909-28382928 | None:intergenic | 45.0% | |
| !! | GACCAATGATGATGGTAGCA+TGG | + | chr7_3:28382919-28382938 | Msa1099630:CDS | 45.0% |
| CACCATGCTACCATCATCAT+TGG | - | chr7_3:28382924-28382943 | None:intergenic | 45.0% | |
| GTTTATGCAATCACACCTCC+TGG | + | chr7_3:28382947-28382966 | Msa1099630:CDS | 45.0% | |
| ACCACACTCCTAAGAAAGCT+GGG | - | chr7_3:28383039-28383058 | None:intergenic | 45.0% | |
| TACCACACTCCTAAGAAAGC+TGG | - | chr7_3:28383040-28383059 | None:intergenic | 45.0% | |
| ! | TCAACACTGGTTGATGTAGG+AGG | + | chr7_3:28383691-28383710 | Msa1099630:CDS | 45.0% |
| GTTGATGTAGGAGGTGGAAA+TGG | + | chr7_3:28383700-28383719 | Msa1099630:CDS | 45.0% | |
| GGTGCATGTTCAATCACTTG+TGG | - | chr7_3:28383787-28383806 | None:intergenic | 45.0% | |
| AAACAATAACCTGGAGAGGG+TGG | - | chr7_3:28383808-28383827 | None:intergenic | 45.0% | |
| TTAGGGATCGAACATGTTGG+AGG | + | chr7_3:28383917-28383936 | Msa1099630:intron | 45.0% | |
| TCAAGTTAGCAAAATGGCGG+AGG | - | chr7_3:28384100-28384119 | None:intergenic | 45.0% | |
| !! | TCCGCCATTTTGCTAACTTG+AGG | + | chr7_3:28384099-28384118 | Msa1099630:intron | 45.0% |
| GTTTATCACAGCTGGTGGTA+AGG | + | chr7_3:28384424-28384443 | Msa1099630:CDS | 45.0% | |
| ! | TTTCTCCATCCTTGGTGTGA+TGG | + | chr7_3:28384520-28384539 | Msa1099630:CDS | 45.0% |
| AAGTTCCATCACACCAAGGA+TGG | - | chr7_3:28384528-28384547 | None:intergenic | 45.0% | |
| AGCATACGGTCAAGCCTATT+TGG | - | chr7_3:28382857-28382876 | None:intergenic | 45.0% | |
| TAGCAAGCAAGCACAGCATA+CGG | - | chr7_3:28382871-28382890 | None:intergenic | 45.0% | |
| ATCATTGGTCCGAGTGGAAA+CGG | - | chr7_3:28382909-28382928 | None:intergenic | 45.0% | |
| !! | GACCAATGATGATGGTAGCA+TGG | + | chr7_3:28382919-28382938 | Msa1099630:CDS | 45.0% |
| CACCATGCTACCATCATCAT+TGG | - | chr7_3:28382924-28382943 | None:intergenic | 45.0% | |
| GTTTATGCAATCACACCTCC+TGG | + | chr7_3:28382947-28382966 | Msa1099630:CDS | 45.0% | |
| ACCACACTCCTAAGAAAGCT+GGG | - | chr7_3:28383039-28383058 | None:intergenic | 45.0% | |
| TACCACACTCCTAAGAAAGC+TGG | - | chr7_3:28383040-28383059 | None:intergenic | 45.0% | |
| ! | TCAACACTGGTTGATGTAGG+AGG | + | chr7_3:28383691-28383710 | Msa1099630:CDS | 45.0% |
| GTTGATGTAGGAGGTGGAAA+TGG | + | chr7_3:28383700-28383719 | Msa1099630:CDS | 45.0% | |
| GGTGCATGTTCAATCACTTG+TGG | - | chr7_3:28383787-28383806 | None:intergenic | 45.0% | |
| AAACAATAACCTGGAGAGGG+TGG | - | chr7_3:28383808-28383827 | None:intergenic | 45.0% | |
| TTAGGGATCGAACATGTTGG+AGG | + | chr7_3:28383917-28383936 | Msa1099630:intron | 45.0% | |
| TCAAGTTAGCAAAATGGCGG+AGG | - | chr7_3:28384100-28384119 | None:intergenic | 45.0% | |
| !! | TCCGCCATTTTGCTAACTTG+AGG | + | chr7_3:28384099-28384118 | Msa1099630:intron | 45.0% |
| GTTTATCACAGCTGGTGGTA+AGG | + | chr7_3:28384424-28384443 | Msa1099630:CDS | 45.0% | |
| ! | TTTCTCCATCCTTGGTGTGA+TGG | + | chr7_3:28384520-28384539 | Msa1099630:CDS | 45.0% |
| AAGTTCCATCACACCAAGGA+TGG | - | chr7_3:28384528-28384547 | None:intergenic | 45.0% | |
| !!! | ATATTTATGAATTTTTTTAA+TGG | - | chr7_3:28384156-28384175 | None:intergenic | 5.0% |
| !!! | ATATTTATGAATTTTTTTAA+TGG | - | chr7_3:28384156-28384175 | None:intergenic | 5.0% |
| TCCACTCGGACCAATGATGA+TGG | + | chr7_3:28382911-28382930 | Msa1099630:CDS | 50.0% | |
| ACCATCATCATTGGTCCGAG+TGG | - | chr7_3:28382915-28382934 | None:intergenic | 50.0% | |
| ACCCAGCTTTCTTAGGAGTG+TGG | + | chr7_3:28383035-28383054 | Msa1099630:CDS | 50.0% | |
| ! | ACACTGGTTGATGTAGGAGG+TGG | + | chr7_3:28383694-28383713 | Msa1099630:CDS | 50.0% |
| TGTCGTGCTTTCTCCATCCT+TGG | + | chr7_3:28384512-28384531 | Msa1099630:CDS | 50.0% | |
| TCCACTCGGACCAATGATGA+TGG | + | chr7_3:28382911-28382930 | Msa1099630:CDS | 50.0% | |
| ACCATCATCATTGGTCCGAG+TGG | - | chr7_3:28382915-28382934 | None:intergenic | 50.0% | |
| ACCCAGCTTTCTTAGGAGTG+TGG | + | chr7_3:28383035-28383054 | Msa1099630:CDS | 50.0% | |
| ! | ACACTGGTTGATGTAGGAGG+TGG | + | chr7_3:28383694-28383713 | Msa1099630:CDS | 50.0% |
| TGTCGTGCTTTCTCCATCCT+TGG | + | chr7_3:28384512-28384531 | Msa1099630:CDS | 50.0% | |
| ! | CTGTGCTTGCTTGCTAGCCA+CGG | + | chr7_3:28382875-28382894 | Msa1099630:CDS | 55.0% |
| GTCTCCTGTCCGTTTCCACT+CGG | + | chr7_3:28382897-28382916 | Msa1099630:CDS | 55.0% | |
| ! | CTGTGCTTGCTTGCTAGCCA+CGG | + | chr7_3:28382875-28382894 | Msa1099630:CDS | 55.0% |
| GTCTCCTGTCCGTTTCCACT+CGG | + | chr7_3:28382897-28382916 | Msa1099630:CDS | 55.0% | |
| TGGAAACGGACAGGAGACCG+TGG | - | chr7_3:28382895-28382914 | None:intergenic | 60.0% | |
| TGGTCCGAGTGGAAACGGAC+AGG | - | chr7_3:28382904-28382923 | None:intergenic | 60.0% | |
| GAACATGCACCACCCTCTCC+AGG | + | chr7_3:28383796-28383815 | Msa1099630:CDS | 60.0% | |
| TGGAAACGGACAGGAGACCG+TGG | - | chr7_3:28382895-28382914 | None:intergenic | 60.0% | |
| TGGTCCGAGTGGAAACGGAC+AGG | - | chr7_3:28382904-28382923 | None:intergenic | 60.0% | |
| GAACATGCACCACCCTCTCC+AGG | + | chr7_3:28383796-28383815 | Msa1099630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 28382689 | 28384556 | 28382689 | ID=Msa1099630;Name=Msa1099630 |
| chr7_3 | mRNA | 28382689 | 28384556 | 28382689 | ID=Msa1099630-mRNA-1;Parent=Msa1099630;Name=Msa1099630-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|4|0|347 |
| chr7_3 | exon | 28382689 | 28383056 | 28382689 | ID=Msa1099630-mRNA-1:exon:5976;Parent=Msa1099630-mRNA-1 |
| chr7_3 | exon | 28383504 | 28383817 | 28383504 | ID=Msa1099630-mRNA-1:exon:5977;Parent=Msa1099630-mRNA-1 |
| chr7_3 | exon | 28383921 | 28383985 | 28383921 | ID=Msa1099630-mRNA-1:exon:5978;Parent=Msa1099630-mRNA-1 |
| chr7_3 | exon | 28384260 | 28384556 | 28384260 | ID=Msa1099630-mRNA-1:exon:5979;Parent=Msa1099630-mRNA-1 |
| chr7_3 | CDS | 28382689 | 28383056 | 28382689 | ID=Msa1099630-mRNA-1:cds;Parent=Msa1099630-mRNA-1 |
| chr7_3 | CDS | 28383504 | 28383817 | 28383504 | ID=Msa1099630-mRNA-1:cds;Parent=Msa1099630-mRNA-1 |
| chr7_3 | CDS | 28383921 | 28383985 | 28383921 | ID=Msa1099630-mRNA-1:cds;Parent=Msa1099630-mRNA-1 |
| chr7_3 | CDS | 28384260 | 28384556 | 28384260 | ID=Msa1099630-mRNA-1:cds;Parent=Msa1099630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
