AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1099990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1099990 MtrunA17_Chr7g0217851 72.464 207 19 2 32 220 5 191 1.06e-74 224
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCTGCTGCTGGCATCCA+AGG 0.270786 7_3:+29294544 None:intergenic
ATCCAACGGCTGGCTGCTGC+TGG 0.310560 7_3:+29294535 None:intergenic
GTGAAGTTGTATCATCTTCA+TGG 0.356415 7_3:+29294996 None:intergenic
TCCATTCCCGTTCGTTCCCA+TGG 0.377294 7_3:-29295959 Msa1099990:exon
TCTTCTGAAATTCCTTCGAT+TGG 0.381060 7_3:+29296022 None:intergenic
GTGCACATGCCAAGACAATA+TGG 0.390446 7_3:-29294962 Msa1099990:CDS
CAGTTTATTCTTCTTAGACT+TGG 0.397498 7_3:+29295903 None:intergenic
TGAGGATAAAGCTGCTGTTC+AGG 0.399727 7_3:-29294480 Msa1099990:CDS
TGGCTGCTGCTGGCATCCAA+GGG 0.406161 7_3:+29294545 None:intergenic
CTTCTGAAATTCCTTCGATT+GGG 0.407413 7_3:+29296023 None:intergenic
ACCTCCTTGCCATATTGTCT+TGG 0.411256 7_3:+29294953 None:intergenic
GGTCCAATATCTAGAGTAGT+TGG 0.419554 7_3:+29294438 None:intergenic
TTATGATCAGATTTATCGTC+AGG 0.438391 7_3:-29295765 Msa1099990:intron
GGCATGTGCACAGGTTGAAT+TGG 0.447704 7_3:+29294974 None:intergenic
TCTCCCTCTCCTCTCTCAAC+CGG 0.450113 7_3:-29296117 None:intergenic
CCATTCCCGTTCGTTCCCAT+GGG 0.457296 7_3:-29295958 Msa1099990:exon
CTCTTACTCTAAATTCACTC+TGG 0.470546 7_3:-29295385 Msa1099990:CDS
CTCCACCCATGGGAACGAAC+GGG 0.476264 7_3:+29295953 None:intergenic
ATAAAGCTGCTGTTCAGGAG+GGG 0.477624 7_3:-29294475 Msa1099990:CDS
TGCCAGCAGCAGCCAGCCGT+TGG 0.479830 7_3:-29294537 Msa1099990:CDS
CTGAAATTCCTTCGATTGGG+CGG 0.485156 7_3:+29296026 None:intergenic
AAGAGAAGAAGAGAGGAGAT+AGG 0.493861 7_3:+29296084 None:intergenic
CCGTTCGTTCCCATGGGTGG+AGG 0.497822 7_3:-29295952 Msa1099990:exon
TATTGTCTTGGCATGTGCAC+AGG 0.498215 7_3:+29294965 None:intergenic
TTCCCGTTCGTTCCCATGGG+TGG 0.500541 7_3:-29295955 Msa1099990:exon
TGAAAATGATATGAAGCCCT+TGG 0.509252 7_3:-29294561 Msa1099990:CDS
ACAGGCCCACAAAGCAAAAG+AGG 0.516243 7_3:-29295420 Msa1099990:CDS
TAAAGCTGCTGTTCAGGAGG+GGG 0.518520 7_3:-29294474 Msa1099990:CDS
CCCATGGGAACGAACGGGAA+TGG 0.520437 7_3:+29295958 None:intergenic
AGCCTCTTCTGCTAATCGAC+GGG 0.530366 7_3:+29295514 None:intergenic
GTCCAATATCTAGAGTAGTT+GGG 0.530987 7_3:+29294439 None:intergenic
GATAAAGCTGCTGTTCAGGA+GGG 0.535418 7_3:-29294476 Msa1099990:CDS
GGAGATAGGCACAGGCTGAC+CGG 0.538313 7_3:+29296098 None:intergenic
TGTTGAGCTCATCCAACGGC+TGG 0.538954 7_3:+29294525 None:intergenic
AGAAGAGAGGAGATAGGCAC+AGG 0.544623 7_3:+29296090 None:intergenic
CCTCCACCCATGGGAACGAA+CGG 0.548336 7_3:+29295952 None:intergenic
AGCCCGTCGATTAGCAAAAG+AGG 0.550604 7_3:-29295462 Msa1099990:CDS
AGCCCGTCGATTAGCAGAAG+AGG 0.554670 7_3:-29295516 Msa1099990:CDS
ACAGGCTGACCGGTTGAGAG+AGG 0.557179 7_3:+29296108 None:intergenic
CTGTGTTTGTAATGTTTGCA+AGG 0.567137 7_3:+29295297 None:intergenic
CTAGGGTTCCGCCCAATCGA+AGG 0.577172 7_3:-29296034 Msa1099990:five_prime_UTR
AACTCAGAAAAGAAAACCTA+GGG 0.577601 7_3:-29296051 Msa1099990:five_prime_UTR
CAACTCAGAAAAGAAAACCT+AGG 0.581444 7_3:-29296052 Msa1099990:five_prime_UTR
GAATTGAAAGAGAAGAAGAG+AGG 0.585085 7_3:+29296077 None:intergenic
TCGTGTGTGGGCAGTAAAGA+CGG 0.585395 7_3:+29295342 None:intergenic
GAGCCTCTTCTGCTAATCGA+CGG 0.589148 7_3:+29295513 None:intergenic
AAGAGAAGAGAAGAAAAGAG+AGG 0.597244 7_3:-29295998 Msa1099990:five_prime_UTR
AAAGCTGCTGTTCAGGAGGG+GGG 0.608878 7_3:-29294473 Msa1099990:CDS
GTGTTTCTCTAGTCGTGTGT+GGG 0.609787 7_3:+29295330 None:intergenic
AGTGTTTCTCTAGTCGTGTG+TGG 0.609826 7_3:+29295329 None:intergenic
GGATAAAGCTGCTGTTCAGG+AGG 0.611925 7_3:-29294477 Msa1099990:CDS
AGCACAAAACGTTAGCCTTG+AGG 0.612439 7_3:-29294498 Msa1099990:CDS
GAACAGCAGCTTTATCCTCA+AGG 0.621167 7_3:+29294483 None:intergenic
TCTTACTCTAAATTCACTCT+GGG 0.627636 7_3:-29295384 Msa1099990:CDS
GACTTGTTGAGCTCATCCAA+CGG 0.652885 7_3:+29294521 None:intergenic
ACGGTGCATTGCATCAGCAG+TGG 0.666153 7_3:+29295361 None:intergenic
CATGCCAAGACAATATGGCA+AGG 0.675235 7_3:-29294957 Msa1099990:CDS
GCCAAGACAATATGGCAAGG+AGG 0.714840 7_3:-29294954 Msa1099990:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTAAATGTTATGAAAAT+TGG + chr7_3:29294708-29294727 None:intergenic 15.0%
!! AAATACAAATACAAATACAA+TGG + chr7_3:29294966-29294985 None:intergenic 15.0%
!! TTATAAGAAATTAAGCAAAA+GGG - chr7_3:29295932-29295951 Msa1099990:CDS 15.0%
!!! ATTTTTAATTATGTATTTGC+AGG - chr7_3:29295965-29295984 Msa1099990:five_prime_UTR 15.0%
!! ATACTAAATGTTATGAAAAT+TGG + chr7_3:29294708-29294727 None:intergenic 15.0%
!! AAATACAAATACAAATACAA+TGG + chr7_3:29294966-29294985 None:intergenic 15.0%
!! TTATAAGAAATTAAGCAAAA+GGG - chr7_3:29295932-29295951 Msa1099990:CDS 15.0%
!!! ATTTTTAATTATGTATTTGC+AGG - chr7_3:29295965-29295984 Msa1099990:five_prime_UTR 15.0%
!!! TTTTAACTAACTTGTTATGT+TGG - chr7_3:29294823-29294842 Msa1099990:intron 20.0%
!! ATGTTCTGTTAATGTTAATT+TGG - chr7_3:29294849-29294868 Msa1099990:intron 20.0%
!!! TGTTAATGTTAATTTGGTTA+TGG - chr7_3:29294855-29294874 Msa1099990:intron 20.0%
!! GTATTTGTATTTGTATTTGT+AGG - chr7_3:29294968-29294987 Msa1099990:CDS 20.0%
!!! CATAGCTTTTCTTTAAAATT+GGG - chr7_3:29295832-29295851 Msa1099990:intron 20.0%
!! AATTTCTTATAAGTAAGGAA+AGG + chr7_3:29295924-29295943 None:intergenic 20.0%
!! TGCTTAATTTCTTATAAGTA+AGG + chr7_3:29295929-29295948 None:intergenic 20.0%
!! CTTATAAGAAATTAAGCAAA+AGG - chr7_3:29295931-29295950 Msa1099990:CDS 20.0%
!!! TTTTAACTAACTTGTTATGT+TGG - chr7_3:29294823-29294842 Msa1099990:intron 20.0%
!! ATGTTCTGTTAATGTTAATT+TGG - chr7_3:29294849-29294868 Msa1099990:intron 20.0%
!!! TGTTAATGTTAATTTGGTTA+TGG - chr7_3:29294855-29294874 Msa1099990:intron 20.0%
!! GTATTTGTATTTGTATTTGT+AGG - chr7_3:29294968-29294987 Msa1099990:CDS 20.0%
!!! CATAGCTTTTCTTTAAAATT+GGG - chr7_3:29295832-29295851 Msa1099990:intron 20.0%
!! AATTTCTTATAAGTAAGGAA+AGG + chr7_3:29295924-29295943 None:intergenic 20.0%
!! TGCTTAATTTCTTATAAGTA+AGG + chr7_3:29295929-29295948 None:intergenic 20.0%
!! CTTATAAGAAATTAAGCAAA+AGG - chr7_3:29295931-29295950 Msa1099990:CDS 20.0%
!!! ACTTGGATTTCTTTTTTGTT+CGG + chr7_3:29294639-29294658 None:intergenic 25.0%
! TAAAAAAAAAGCAGAAGAAG+AGG - chr7_3:29295070-29295089 Msa1099990:intron 25.0%
!!! GCAATTTTTAAGAAAACCTA+CGG + chr7_3:29295285-29295304 None:intergenic 25.0%
!! GTTTTCTTAAAAATTGCTCT+AGG - chr7_3:29295288-29295307 Msa1099990:intron 25.0%
!!! GGAATTTTTAAGAAAACCTA+CGG + chr7_3:29295449-29295468 None:intergenic 25.0%
!! GTTTTCTTAAAAATTCCTCT+AGG - chr7_3:29295452-29295471 Msa1099990:CDS 25.0%
! AATAAAAAACGTCTTGTAGA+AGG + chr7_3:29295632-29295651 None:intergenic 25.0%
!!! GCATAGCTTTTCTTTAAAAT+TGG - chr7_3:29295831-29295850 Msa1099990:intron 25.0%
!!! ACTTGGATTTCTTTTTTGTT+CGG + chr7_3:29294639-29294658 None:intergenic 25.0%
! TAAAAAAAAAGCAGAAGAAG+AGG - chr7_3:29295070-29295089 Msa1099990:intron 25.0%
!!! GCAATTTTTAAGAAAACCTA+CGG + chr7_3:29295285-29295304 None:intergenic 25.0%
!! GTTTTCTTAAAAATTGCTCT+AGG - chr7_3:29295288-29295307 Msa1099990:intron 25.0%
!!! GGAATTTTTAAGAAAACCTA+CGG + chr7_3:29295449-29295468 None:intergenic 25.0%
!! GTTTTCTTAAAAATTCCTCT+AGG - chr7_3:29295452-29295471 Msa1099990:CDS 25.0%
! AATAAAAAACGTCTTGTAGA+AGG + chr7_3:29295632-29295651 None:intergenic 25.0%
!!! GCATAGCTTTTCTTTAAAAT+TGG - chr7_3:29295831-29295850 Msa1099990:intron 25.0%
AACTCAGAAAAGAAAACCTA+GGG - chr7_3:29294505-29294524 Msa1099990:CDS 30.0%
! AGAAGAAAAGAGAGGATTTT+AGG - chr7_3:29294566-29294585 Msa1099990:CDS 30.0%
! GAAGAAAAGAGAGGATTTTA+GGG - chr7_3:29294567-29294586 Msa1099990:CDS 30.0%
CAGTTTATTCTTCTTAGACT+TGG + chr7_3:29294656-29294675 None:intergenic 30.0%
TTATGATCAGATTTATCGTC+AGG - chr7_3:29294791-29294810 Msa1099990:intron 30.0%
TCTTGCTCAAAAAAAACTAC+AGG - chr7_3:29295118-29295137 Msa1099990:intron 30.0%
TCTTACTCTAAATTCACTCT+GGG - chr7_3:29295172-29295191 Msa1099990:intron 30.0%
GAATAGAAGTGGTATACTTA+TGG + chr7_3:29295755-29295774 None:intergenic 30.0%
AGATGAAAAGTGAATAGAAG+TGG + chr7_3:29295766-29295785 None:intergenic 30.0%
CTTCTTACTAATACACCAAA+TGG - chr7_3:29295858-29295877 Msa1099990:intron 30.0%
AACTCAGAAAAGAAAACCTA+GGG - chr7_3:29294505-29294524 Msa1099990:CDS 30.0%
! AGAAGAAAAGAGAGGATTTT+AGG - chr7_3:29294566-29294585 Msa1099990:CDS 30.0%
! GAAGAAAAGAGAGGATTTTA+GGG - chr7_3:29294567-29294586 Msa1099990:CDS 30.0%
CAGTTTATTCTTCTTAGACT+TGG + chr7_3:29294656-29294675 None:intergenic 30.0%
TTATGATCAGATTTATCGTC+AGG - chr7_3:29294791-29294810 Msa1099990:intron 30.0%
TCTTGCTCAAAAAAAACTAC+AGG - chr7_3:29295118-29295137 Msa1099990:intron 30.0%
TCTTACTCTAAATTCACTCT+GGG - chr7_3:29295172-29295191 Msa1099990:intron 30.0%
GAATAGAAGTGGTATACTTA+TGG + chr7_3:29295755-29295774 None:intergenic 30.0%
AGATGAAAAGTGAATAGAAG+TGG + chr7_3:29295766-29295785 None:intergenic 30.0%
CTTCTTACTAATACACCAAA+TGG - chr7_3:29295858-29295877 Msa1099990:intron 30.0%
GAATTGAAAGAGAAGAAGAG+AGG + chr7_3:29294482-29294501 None:intergenic 35.0%
CAACTCAGAAAAGAAAACCT+AGG - chr7_3:29294504-29294523 Msa1099990:CDS 35.0%
!! CTTCTGAAATTCCTTCGATT+GGG + chr7_3:29294536-29294555 None:intergenic 35.0%
!! TCTTCTGAAATTCCTTCGAT+TGG + chr7_3:29294537-29294556 None:intergenic 35.0%
AAGAGAAGAGAAGAAAAGAG+AGG - chr7_3:29294558-29294577 Msa1099990:CDS 35.0%
! CATGATGATGATGATGATCT+TGG - chr7_3:29294894-29294913 Msa1099990:intron 35.0%
!!! CTCTTCTTCTGCTACTTTTT+TGG + chr7_3:29295018-29295037 None:intergenic 35.0%
CAAAAAAGTAGCAGAAGAAG+AGG - chr7_3:29295016-29295035 Msa1099990:intron 35.0%
CTCTTACTCTAAATTCACTC+TGG - chr7_3:29295171-29295190 Msa1099990:intron 35.0%
CTGTGTTTGTAATGTTTGCA+AGG + chr7_3:29295262-29295281 None:intergenic 35.0%
!! CGTTGTTTCTTAGTAAGGAA+AGG + chr7_3:29295324-29295343 None:intergenic 35.0%
!! AAGCACGTTGTTTCTTAGTA+AGG + chr7_3:29295329-29295348 None:intergenic 35.0%
! TTTTGTAATCTGTATGCAGC+TGG - chr7_3:29295372-29295391 Msa1099990:CDS 35.0%
! GAAAAAGCGTATCATCTTCA+TGG + chr7_3:29295399-29295418 None:intergenic 35.0%
!! CGTTGTTTCTTAGTAAGGAA+AGG + chr7_3:29295324-29295343 None:intergenic 35.0%
!! AAGCACGTTGTTTCTTAGTA+AGG + chr7_3:29295329-29295348 None:intergenic 35.0%
! TTTTGTAATCTGTATGCAGC+TGG - chr7_3:29295372-29295391 Msa1099990:CDS 35.0%
GTGAAGTTGTATCATCTTCA+TGG + chr7_3:29295563-29295582 None:intergenic 35.0%
TAGTTTCATGAACAGGAGAT+AGG + chr7_3:29295674-29295693 None:intergenic 35.0%
! ATGGATTGACATGAATGTTC+AGG + chr7_3:29295736-29295755 None:intergenic 35.0%
GTACTCAGTGATTCAAACAT+AGG - chr7_3:29295809-29295828 Msa1099990:intron 35.0%
TGAAAATGATATGAAGCCCT+TGG - chr7_3:29295995-29296014 Msa1099990:five_prime_UTR 35.0%
GAATTGAAAGAGAAGAAGAG+AGG + chr7_3:29294482-29294501 None:intergenic 35.0%
CAACTCAGAAAAGAAAACCT+AGG - chr7_3:29294504-29294523 Msa1099990:CDS 35.0%
!! CTTCTGAAATTCCTTCGATT+GGG + chr7_3:29294536-29294555 None:intergenic 35.0%
!! TCTTCTGAAATTCCTTCGAT+TGG + chr7_3:29294537-29294556 None:intergenic 35.0%
AAGAGAAGAGAAGAAAAGAG+AGG - chr7_3:29294558-29294577 Msa1099990:CDS 35.0%
! CATGATGATGATGATGATCT+TGG - chr7_3:29294894-29294913 Msa1099990:intron 35.0%
!!! CTCTTCTTCTGCTACTTTTT+TGG + chr7_3:29295018-29295037 None:intergenic 35.0%
CAAAAAAGTAGCAGAAGAAG+AGG - chr7_3:29295016-29295035 Msa1099990:intron 35.0%
CTCTTACTCTAAATTCACTC+TGG - chr7_3:29295171-29295190 Msa1099990:intron 35.0%
CTGTGTTTGTAATGTTTGCA+AGG + chr7_3:29295262-29295281 None:intergenic 35.0%
!! CGTTGTTTCTTAGTAAGGAA+AGG + chr7_3:29295324-29295343 None:intergenic 35.0%
!! AAGCACGTTGTTTCTTAGTA+AGG + chr7_3:29295329-29295348 None:intergenic 35.0%
! TTTTGTAATCTGTATGCAGC+TGG - chr7_3:29295372-29295391 Msa1099990:CDS 35.0%
! GAAAAAGCGTATCATCTTCA+TGG + chr7_3:29295399-29295418 None:intergenic 35.0%
!! CGTTGTTTCTTAGTAAGGAA+AGG + chr7_3:29295324-29295343 None:intergenic 35.0%
!! AAGCACGTTGTTTCTTAGTA+AGG + chr7_3:29295329-29295348 None:intergenic 35.0%
! TTTTGTAATCTGTATGCAGC+TGG - chr7_3:29295372-29295391 Msa1099990:CDS 35.0%
GTGAAGTTGTATCATCTTCA+TGG + chr7_3:29295563-29295582 None:intergenic 35.0%
TAGTTTCATGAACAGGAGAT+AGG + chr7_3:29295674-29295693 None:intergenic 35.0%
! ATGGATTGACATGAATGTTC+AGG + chr7_3:29295736-29295755 None:intergenic 35.0%
GTACTCAGTGATTCAAACAT+AGG - chr7_3:29295809-29295828 Msa1099990:intron 35.0%
TGAAAATGATATGAAGCCCT+TGG - chr7_3:29295995-29296014 Msa1099990:five_prime_UTR 35.0%
AAGAGAAGAAGAGAGGAGAT+AGG + chr7_3:29294475-29294494 None:intergenic 40.0%
GGAAAGATAGATAGAGAGAG+AGG + chr7_3:29294687-29294706 None:intergenic 40.0%
! ATGATCTTGGCTCTCTGTAT+AGG - chr7_3:29294907-29294926 Msa1099990:intron 40.0%
AACATTACAAACACAGCCGT+AGG - chr7_3:29295266-29295285 Msa1099990:intron 40.0%
AAAGGACAAGACAATCCTAG+AGG + chr7_3:29295306-29295325 None:intergenic 40.0%
AACAGGAGATAGGTTTATGC+AGG + chr7_3:29295664-29295683 None:intergenic 40.0%
CACTAGGTAGTTTCATGAAC+AGG + chr7_3:29295681-29295700 None:intergenic 40.0%
GATAAGAAGACAGTCCTAGA+GGG + chr7_3:29295902-29295921 None:intergenic 40.0%
AAGAGAAGAAGAGAGGAGAT+AGG + chr7_3:29294475-29294494 None:intergenic 40.0%
GGAAAGATAGATAGAGAGAG+AGG + chr7_3:29294687-29294706 None:intergenic 40.0%
! ATGATCTTGGCTCTCTGTAT+AGG - chr7_3:29294907-29294926 Msa1099990:intron 40.0%
AACATTACAAACACAGCCGT+AGG - chr7_3:29295266-29295285 Msa1099990:intron 40.0%
AAAGGACAAGACAATCCTAG+AGG + chr7_3:29295306-29295325 None:intergenic 40.0%
AACAGGAGATAGGTTTATGC+AGG + chr7_3:29295664-29295683 None:intergenic 40.0%
CACTAGGTAGTTTCATGAAC+AGG + chr7_3:29295681-29295700 None:intergenic 40.0%
GATAAGAAGACAGTCCTAGA+GGG + chr7_3:29295902-29295921 None:intergenic 40.0%
CTGAAATTCCTTCGATTGGG+CGG + chr7_3:29294533-29294552 None:intergenic 45.0%
! AGCCTCTTTTGCTAATCGAC+GGG + chr7_3:29295099-29295118 None:intergenic 45.0%
! GAGCCTCTTTTGCTAATCGA+CGG + chr7_3:29295100-29295119 None:intergenic 45.0%
! TGCTGCCTCTTTTGCTTTGT+GGG + chr7_3:29295144-29295163 None:intergenic 45.0%
GTGTTTCTCTAGTCGTGTGT+GGG + chr7_3:29295229-29295248 None:intergenic 45.0%
AGTGTTTCTCTAGTCGTGTG+TGG + chr7_3:29295230-29295249 None:intergenic 45.0%
AAAGCTACAAACACAGCCGT+AGG - chr7_3:29295430-29295449 Msa1099990:CDS 45.0%
TATTGTCTTGGCATGTGCAC+AGG + chr7_3:29295594-29295613 None:intergenic 45.0%
GTGCACATGCCAAGACAATA+TGG - chr7_3:29295594-29295613 Msa1099990:intron 45.0%
CATGCCAAGACAATATGGCA+AGG - chr7_3:29295599-29295618 Msa1099990:intron 45.0%
ACCTCCTTGCCATATTGTCT+TGG + chr7_3:29295606-29295625 None:intergenic 45.0%
GGATAAGAAGACAGTCCTAG+AGG + chr7_3:29295903-29295922 None:intergenic 45.0%
!! GACTTGTTGAGCTCATCCAA+CGG + chr7_3:29296038-29296057 None:intergenic 45.0%
!! AGCACAAAACGTTAGCCTTG+AGG - chr7_3:29296058-29296077 Msa1099990:five_prime_UTR 45.0%
! GAACAGCAGCTTTATCCTCA+AGG + chr7_3:29296076-29296095 None:intergenic 45.0%
TGAGGATAAAGCTGCTGTTC+AGG - chr7_3:29296076-29296095 Msa1099990:five_prime_UTR 45.0%
GATAAAGCTGCTGTTCAGGA+GGG - chr7_3:29296080-29296099 Msa1099990:five_prime_UTR 45.0%
ATAAAGCTGCTGTTCAGGAG+GGG - chr7_3:29296081-29296100 Msa1099990:five_prime_UTR 45.0%
CTGAAATTCCTTCGATTGGG+CGG + chr7_3:29294533-29294552 None:intergenic 45.0%
! AGCCTCTTTTGCTAATCGAC+GGG + chr7_3:29295099-29295118 None:intergenic 45.0%
! GAGCCTCTTTTGCTAATCGA+CGG + chr7_3:29295100-29295119 None:intergenic 45.0%
! TGCTGCCTCTTTTGCTTTGT+GGG + chr7_3:29295144-29295163 None:intergenic 45.0%
GTGTTTCTCTAGTCGTGTGT+GGG + chr7_3:29295229-29295248 None:intergenic 45.0%
AGTGTTTCTCTAGTCGTGTG+TGG + chr7_3:29295230-29295249 None:intergenic 45.0%
AAAGCTACAAACACAGCCGT+AGG - chr7_3:29295430-29295449 Msa1099990:CDS 45.0%
TATTGTCTTGGCATGTGCAC+AGG + chr7_3:29295594-29295613 None:intergenic 45.0%
GTGCACATGCCAAGACAATA+TGG - chr7_3:29295594-29295613 Msa1099990:intron 45.0%
CATGCCAAGACAATATGGCA+AGG - chr7_3:29295599-29295618 Msa1099990:intron 45.0%
ACCTCCTTGCCATATTGTCT+TGG + chr7_3:29295606-29295625 None:intergenic 45.0%
GGATAAGAAGACAGTCCTAG+AGG + chr7_3:29295903-29295922 None:intergenic 45.0%
!! GACTTGTTGAGCTCATCCAA+CGG + chr7_3:29296038-29296057 None:intergenic 45.0%
!! AGCACAAAACGTTAGCCTTG+AGG - chr7_3:29296058-29296077 Msa1099990:five_prime_UTR 45.0%
! GAACAGCAGCTTTATCCTCA+AGG + chr7_3:29296076-29296095 None:intergenic 45.0%
TGAGGATAAAGCTGCTGTTC+AGG - chr7_3:29296076-29296095 Msa1099990:five_prime_UTR 45.0%
GATAAAGCTGCTGTTCAGGA+GGG - chr7_3:29296080-29296099 Msa1099990:five_prime_UTR 45.0%
ATAAAGCTGCTGTTCAGGAG+GGG - chr7_3:29296081-29296100 Msa1099990:five_prime_UTR 45.0%
!! TACAAAATAAAAATAAAAAA+TGG + chr7_3:29294748-29294767 None:intergenic 5.0%
!! TACAAAATAAAAATAAAAAA+TGG + chr7_3:29294748-29294767 None:intergenic 5.0%
AGAAGAGAGGAGATAGGCAC+AGG + chr7_3:29294469-29294488 None:intergenic 50.0%
! CTTTTGCTACCTCCACCCAT+GGG + chr7_3:29294616-29294635 None:intergenic 50.0%
AGCCTCTTCTGCTAATCGAC+GGG + chr7_3:29295045-29295064 None:intergenic 50.0%
GAGCCTCTTCTGCTAATCGA+CGG + chr7_3:29295046-29295065 None:intergenic 50.0%
! AGCCCGTCGATTAGCAAAAG+AGG - chr7_3:29295094-29295113 Msa1099990:intron 50.0%
ACAGGCCCACAAAGCAAAAG+AGG - chr7_3:29295136-29295155 Msa1099990:CDS 50.0%
! CTGCTGCCTCTTTTGCTTTG+TGG + chr7_3:29295145-29295164 None:intergenic 50.0%
TCGTGTGTGGGCAGTAAAGA+CGG + chr7_3:29295217-29295236 None:intergenic 50.0%
! GGCATGTGCACAGGTTGAAT+TGG + chr7_3:29295585-29295604 None:intergenic 50.0%
GCCAAGACAATATGGCAAGG+AGG - chr7_3:29295602-29295621 Msa1099990:intron 50.0%
ACCTAGTGTGTGTGTGTGTC+TGG - chr7_3:29295693-29295712 Msa1099990:intron 50.0%
TCCAGACACACACACACACT+AGG + chr7_3:29295697-29295716 None:intergenic 50.0%
CACCAAATGGAGAGAGCCTT+AGG - chr7_3:29295871-29295890 Msa1099990:intron 50.0%
TGCCTAAGGCTCTCTCCATT+TGG + chr7_3:29295876-29295895 None:intergenic 50.0%
GGATAAAGCTGCTGTTCAGG+AGG - chr7_3:29296079-29296098 Msa1099990:five_prime_UTR 50.0%
TAAAGCTGCTGTTCAGGAGG+GGG - chr7_3:29296082-29296101 Msa1099990:five_prime_UTR 50.0%
AGAAGAGAGGAGATAGGCAC+AGG + chr7_3:29294469-29294488 None:intergenic 50.0%
! CTTTTGCTACCTCCACCCAT+GGG + chr7_3:29294616-29294635 None:intergenic 50.0%
AGCCTCTTCTGCTAATCGAC+GGG + chr7_3:29295045-29295064 None:intergenic 50.0%
GAGCCTCTTCTGCTAATCGA+CGG + chr7_3:29295046-29295065 None:intergenic 50.0%
! AGCCCGTCGATTAGCAAAAG+AGG - chr7_3:29295094-29295113 Msa1099990:intron 50.0%
ACAGGCCCACAAAGCAAAAG+AGG - chr7_3:29295136-29295155 Msa1099990:CDS 50.0%
! CTGCTGCCTCTTTTGCTTTG+TGG + chr7_3:29295145-29295164 None:intergenic 50.0%
TCGTGTGTGGGCAGTAAAGA+CGG + chr7_3:29295217-29295236 None:intergenic 50.0%
! GGCATGTGCACAGGTTGAAT+TGG + chr7_3:29295585-29295604 None:intergenic 50.0%
GCCAAGACAATATGGCAAGG+AGG - chr7_3:29295602-29295621 Msa1099990:intron 50.0%
ACCTAGTGTGTGTGTGTGTC+TGG - chr7_3:29295693-29295712 Msa1099990:intron 50.0%
TCCAGACACACACACACACT+AGG + chr7_3:29295697-29295716 None:intergenic 50.0%
CACCAAATGGAGAGAGCCTT+AGG - chr7_3:29295871-29295890 Msa1099990:intron 50.0%
TGCCTAAGGCTCTCTCCATT+TGG + chr7_3:29295876-29295895 None:intergenic 50.0%
GGATAAAGCTGCTGTTCAGG+AGG - chr7_3:29296079-29296098 Msa1099990:five_prime_UTR 50.0%
TAAAGCTGCTGTTCAGGAGG+GGG - chr7_3:29296082-29296101 Msa1099990:five_prime_UTR 50.0%
TCCATTCCCGTTCGTTCCCA+TGG - chr7_3:29294597-29294616 Msa1099990:intron 55.0%
CCATTCCCGTTCGTTCCCAT+GGG - chr7_3:29294598-29294617 Msa1099990:intron 55.0%
! GCTTTTGCTACCTCCACCCA+TGG + chr7_3:29294617-29294636 None:intergenic 55.0%
! AGCCCGTCGATTAGCAGAAG+AGG - chr7_3:29295040-29295059 Msa1099990:intron 55.0%
ACGGTGCATTGCATCAGCAG+TGG + chr7_3:29295198-29295217 None:intergenic 55.0%
AGCCTTAGGCAATGCCCTCT+AGG - chr7_3:29295885-29295904 Msa1099990:intron 55.0%
!! GTCCTAGAGGGCATTGCCTA+AGG + chr7_3:29295890-29295909 None:intergenic 55.0%
TGTTGAGCTCATCCAACGGC+TGG + chr7_3:29296034-29296053 None:intergenic 55.0%
AAAGCTGCTGTTCAGGAGGG+GGG - chr7_3:29296083-29296102 Msa1099990:five_prime_UTR 55.0%
TCCATTCCCGTTCGTTCCCA+TGG - chr7_3:29294597-29294616 Msa1099990:intron 55.0%
CCATTCCCGTTCGTTCCCAT+GGG - chr7_3:29294598-29294617 Msa1099990:intron 55.0%
! GCTTTTGCTACCTCCACCCA+TGG + chr7_3:29294617-29294636 None:intergenic 55.0%
! AGCCCGTCGATTAGCAGAAG+AGG - chr7_3:29295040-29295059 Msa1099990:intron 55.0%
ACGGTGCATTGCATCAGCAG+TGG + chr7_3:29295198-29295217 None:intergenic 55.0%
AGCCTTAGGCAATGCCCTCT+AGG - chr7_3:29295885-29295904 Msa1099990:intron 55.0%
!! GTCCTAGAGGGCATTGCCTA+AGG + chr7_3:29295890-29295909 None:intergenic 55.0%
TGTTGAGCTCATCCAACGGC+TGG + chr7_3:29296034-29296053 None:intergenic 55.0%
AAAGCTGCTGTTCAGGAGGG+GGG - chr7_3:29296083-29296102 Msa1099990:five_prime_UTR 55.0%
ACAGGCTGACCGGTTGAGAG+AGG + chr7_3:29294451-29294470 None:intergenic 60.0%
GGAGATAGGCACAGGCTGAC+CGG + chr7_3:29294461-29294480 None:intergenic 60.0%
CTTCGATTGGGCGGAACCCT+AGG + chr7_3:29294524-29294543 None:intergenic 60.0%
CTAGGGTTCCGCCCAATCGA+AGG - chr7_3:29294522-29294541 Msa1099990:CDS 60.0%
CCCATGGGAACGAACGGGAA+TGG + chr7_3:29294601-29294620 None:intergenic 60.0%
TTCCCGTTCGTTCCCATGGG+TGG - chr7_3:29294601-29294620 Msa1099990:intron 60.0%
CTCCACCCATGGGAACGAAC+GGG + chr7_3:29294606-29294625 None:intergenic 60.0%
CCTCCACCCATGGGAACGAA+CGG + chr7_3:29294607-29294626 None:intergenic 60.0%
TGGCTGCTGCTGGCATCCAA+GGG + chr7_3:29296014-29296033 None:intergenic 60.0%
! GCTGTTCAGGAGGGGGGTAT+TGG - chr7_3:29296089-29296108 Msa1099990:five_prime_UTR 60.0%
ACAGGCTGACCGGTTGAGAG+AGG + chr7_3:29294451-29294470 None:intergenic 60.0%
GGAGATAGGCACAGGCTGAC+CGG + chr7_3:29294461-29294480 None:intergenic 60.0%
CTTCGATTGGGCGGAACCCT+AGG + chr7_3:29294524-29294543 None:intergenic 60.0%
CTAGGGTTCCGCCCAATCGA+AGG - chr7_3:29294522-29294541 Msa1099990:CDS 60.0%
CCCATGGGAACGAACGGGAA+TGG + chr7_3:29294601-29294620 None:intergenic 60.0%
TTCCCGTTCGTTCCCATGGG+TGG - chr7_3:29294601-29294620 Msa1099990:intron 60.0%
CTCCACCCATGGGAACGAAC+GGG + chr7_3:29294606-29294625 None:intergenic 60.0%
CCTCCACCCATGGGAACGAA+CGG + chr7_3:29294607-29294626 None:intergenic 60.0%
TGGCTGCTGCTGGCATCCAA+GGG + chr7_3:29296014-29296033 None:intergenic 60.0%
! GCTGTTCAGGAGGGGGGTAT+TGG - chr7_3:29296089-29296108 Msa1099990:five_prime_UTR 60.0%
CCGTTCGTTCCCATGGGTGG+AGG - chr7_3:29294604-29294623 Msa1099990:intron 65.0%
CTGGCTGCTGCTGGCATCCA+AGG + chr7_3:29296015-29296034 None:intergenic 65.0%
! ATCCAACGGCTGGCTGCTGC+TGG + chr7_3:29296024-29296043 None:intergenic 65.0%
CCGTTCGTTCCCATGGGTGG+AGG - chr7_3:29294604-29294623 Msa1099990:intron 65.0%
CTGGCTGCTGCTGGCATCCA+AGG + chr7_3:29296015-29296034 None:intergenic 65.0%
! ATCCAACGGCTGGCTGCTGC+TGG + chr7_3:29296024-29296043 None:intergenic 65.0%
TGCCAGCAGCAGCCAGCCGT+TGG - chr7_3:29296019-29296038 Msa1099990:five_prime_UTR 70.0%
TGCCAGCAGCAGCCAGCCGT+TGG - chr7_3:29296019-29296038 Msa1099990:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 29294448 29296130 29294448 ID=Msa1099990;Name=Msa1099990
chr7_3 mRNA 29294448 29296130 29294448 ID=Msa1099990-mRNA-1;Parent=Msa1099990;Name=Msa1099990-mRNA-1;_AED=0.05;_eAED=0.05;_QI=168|0.6|0.33|1|1|1|6|0|220
chr7_3 exon 29294448 29294591 29294448 ID=Msa1099990-mRNA-1:exon:6220;Parent=Msa1099990-mRNA-1
chr7_3 exon 29294955 29295023 29294955 ID=Msa1099990-mRNA-1:exon:6219;Parent=Msa1099990-mRNA-1
chr7_3 exon 29295131 29295187 29295131 ID=Msa1099990-mRNA-1:exon:6218;Parent=Msa1099990-mRNA-1
chr7_3 exon 29295295 29295582 29295295 ID=Msa1099990-mRNA-1:exon:6217;Parent=Msa1099990-mRNA-1
chr7_3 exon 29295766 29295809 29295766 ID=Msa1099990-mRNA-1:exon:6216;Parent=Msa1099990-mRNA-1
chr7_3 exon 29295902 29296130 29295902 ID=Msa1099990-mRNA-1:exon:6215;Parent=Msa1099990-mRNA-1
chr7_3 five_prime_UTR 29295963 29296130 29295963 ID=Msa1099990-mRNA-1:five_prime_utr;Parent=Msa1099990-mRNA-1
chr7_3 CDS 29295902 29295962 29295902 ID=Msa1099990-mRNA-1:cds;Parent=Msa1099990-mRNA-1
chr7_3 CDS 29295766 29295809 29295766 ID=Msa1099990-mRNA-1:cds;Parent=Msa1099990-mRNA-1
chr7_3 CDS 29295295 29295582 29295295 ID=Msa1099990-mRNA-1:cds;Parent=Msa1099990-mRNA-1
chr7_3 CDS 29295131 29295187 29295131 ID=Msa1099990-mRNA-1:cds;Parent=Msa1099990-mRNA-1
chr7_3 CDS 29294955 29295023 29294955 ID=Msa1099990-mRNA-1:cds;Parent=Msa1099990-mRNA-1
chr7_3 CDS 29294448 29294591 29294448 ID=Msa1099990-mRNA-1:cds;Parent=Msa1099990-mRNA-1
Gene Sequence

>Msa1099990

ATGGGTGGAGGTAGCAAAAGCCGAACAAAAAAGAAATCCAAGTCTAAGAAGAATAAACTGACATCTTCTGAACGTCAATCTATTTATGATCAGATTTATCGTCAGGTACTATCTGATATACAAGCCAAAAAAGTAGCAGAAGAAGAGGAAGCCCGTCGATTAGCAGAAGAGGCTCTTGCTAAAAAAAAAGCAGAAGAAGAGGAAGCCCGTCGATTAGCAAAAGAGGCTCTTGCTCAAAAAAAACTACAGGCCCACAAAGCAAAAGAGGCAGCAGAAAAGACTCTTACTCTAAATTCACTCTGGGCCACTGCTGATGCAATGCACCGTCTTTACTGCCCACACACGACTAGAGAAACACTTTTTCGAAACCTTGCAAACATTACAAACACAGCCCTGGACCATGAAGATGATACGCTTTTTCGAAAACTTGCAAAAGCTACAAACACAGCCCTGGACCATGAAGATGATACAACTTCACCAATTCAACCTGTGCACATGCCAAGACAATATGGCAAGGAGGTCAACTATGAAAATGATATGAAGCCCTTGGATGCCAGCAGCAGCCAGCCGTTGGATGAGCTCAACAAGTCAGCACAAAACGTTAGCCTTGAGGATAAAGCTGCTGTTCAGGAGGGGGGTATTGGCAGCGCCCAACTACTCTAG
Protein sequence

>Msa1099990

MGGGSKSRTKKKSKSKKNKLTSSERQSIYDQIYRQVLSDIQAKKVAEEEEARRLAEEALAKKKAEEEEARRLAKEALAQKKLQAHKAKEAAEKTLTLNSLWATADAMHRLYCPHTTRETLFRNLANITNTALDHEDDTLFRKLAKATNTALDHEDDTTSPIQPVHMPRQYGKEVNYENDMKPLDASSSQPLDELNKSAQNVSLEDKAAVQEGGIGSAQLL*