AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1102930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102930 MtrunA17_Chr7g0232641 98.039 102 2 0 1 102 1 102 2.60e-69 202
Msa1102930 MtrunA17_Chr7g0232501 94.000 50 3 0 25 74 1 50 7.04e-28 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102930 AT3G60480.1 47.222 108 50 1 1 101 1 108 3.06e-27 96.7
Msa1102930 AT3G60480.3 47.170 106 49 1 1 99 1 106 2.27e-26 94.7
Msa1102930 AT3G60480.2 49.383 81 34 1 1 74 1 81 2.01e-17 70.9

Find 63 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAGTTTAGCTCTTAAAT+TGG 0.250316 7_3:+37539726 None:intergenic
ATCAAACCTTTAACCTTTCA+AGG 0.295703 7_3:+37539149 None:intergenic
CTTCATGCTAATGGCATTCA+TGG 0.320311 7_3:-37542933 Msa1102930:CDS
GTAACCGGTGGCGGCGGTGG+CGG 0.348727 7_3:-37543119 Msa1102930:CDS
ATTACATGTATGTATTGATC+AGG 0.359570 7_3:+37543191 None:intergenic
GAAGTAACCGGTGGCGGCGG+TGG 0.363687 7_3:-37543122 Msa1102930:CDS
GCGGTTCCTTGAAAGGTTAA+AGG 0.373046 7_3:-37539155 Msa1102930:three_prime_UTR
AGTAGAATCAAGTTTGATAT+AGG 0.373695 7_3:-37538907 Msa1102930:three_prime_UTR
ATTCACTTCAATTATGTCAT+TGG 0.378080 7_3:-37538780 Msa1102930:three_prime_UTR
CAAACAAAATTGCCATCAAT+TGG 0.381038 7_3:+37539086 None:intergenic
TGTAGCTAGTGCAGCTCAAA+TGG 0.385704 7_3:-37543075 Msa1102930:CDS
TTGGTGGTGTGGTTCCTTGT+TGG 0.395031 7_3:-37539203 Msa1102930:three_prime_UTR
AGTACAAACAAAGAACAAAA+AGG 0.395483 7_3:-37543229 Msa1102930:five_prime_UTR
ACAAGATGTGAATGAGCATT+TGG 0.396751 7_3:+37539234 None:intergenic
TTTCGTACTTTAAGATCAAA+AGG 0.405054 7_3:+37543274 None:intergenic
ACCGGTGGCGGCGGTGGCGG+AGG 0.413778 7_3:-37543116 Msa1102930:CDS
GCGGAGGTATTCAATGGTTG+TGG 0.429411 7_3:-37543100 Msa1102930:CDS
GAGATACTACATCCAATTGA+TGG 0.441916 7_3:-37539098 Msa1102930:three_prime_UTR
TCACATCTTGTGATATTACT+TGG 0.451902 7_3:-37539222 Msa1102930:three_prime_UTR
CTAAGCGAGCCTAAAAGTTC+CGG 0.456578 7_3:+37538986 None:intergenic
TGCTATGAAGTGAGTTGTTA+AGG 0.463358 7_3:-37538935 Msa1102930:three_prime_UTR
TTGTGGCGCGGTTCCTTGAA+AGG 0.472392 7_3:-37539162 Msa1102930:three_prime_UTR
ACCTCCGCCACCGCCGCCAC+CGG 0.473612 7_3:+37543115 None:intergenic
ATCACAGCACGGAGATTCAA+TGG 0.477274 7_3:-37543147 Msa1102930:exon
CGGAGGTATTCAATGGTTGT+GGG 0.485894 7_3:-37543099 Msa1102930:CDS
TAGTGCAGCTCAAATGGGAT+TGG 0.486804 7_3:-37543069 Msa1102930:CDS
GAGGAAGTAACCGGTGGCGG+CGG 0.494495 7_3:-37543125 Msa1102930:CDS
GCCAATTTAAGAGCTAAACT+TGG 0.495903 7_3:-37539727 Msa1102930:CDS
GGGTGTACGTTCCTACCGTA+AGG 0.501313 7_3:-37543048 Msa1102930:CDS
GATTCAATGGAGGAAGTAAC+CGG 0.502639 7_3:-37543134 Msa1102930:exon
TTCGTACTTTAAGATCAAAA+GGG 0.503555 7_3:+37543275 None:intergenic
TTCATGCTAATGGCATTCAT+GGG 0.503581 7_3:-37542932 Msa1102930:CDS
AATCCCCTGCGTGACCCTTA+CGG 0.506353 7_3:+37543033 None:intergenic
AGTGCAGCTCAAATGGGATT+GGG 0.511432 7_3:-37543068 Msa1102930:CDS
TTTCATTGATCTTAGTCAGC+CGG 0.516622 7_3:-37539005 Msa1102930:three_prime_UTR
TTACATGTATGTATTGATCA+GGG 0.523300 7_3:+37543192 None:intergenic
TTGTACTGTTCTGTTGCACT+TGG 0.528155 7_3:+37543245 None:intergenic
CCAATTTAAGAGCTAAACTT+GGG 0.529370 7_3:-37539726 Msa1102930:CDS
ATGGAGGAAGTAACCGGTGG+CGG 0.537266 7_3:-37543128 Msa1102930:CDS
TGAATAAAAGTCATTCTAAG+TGG 0.538220 7_3:+37538798 None:intergenic
CATCTTGTGATATTACTTGG+TGG 0.538716 7_3:-37539219 Msa1102930:three_prime_UTR
TGTGATATTACTTGGTGGTG+TGG 0.542075 7_3:-37539214 Msa1102930:three_prime_UTR
AATGAAAACAGAAGCAGAAG+CGG 0.552883 7_3:+37542956 None:intergenic
ATCGATGACAATGTATTGCA+AGG 0.573821 7_3:+37539036 None:intergenic
GTAGCTAGTGCAGCTCAAAT+GGG 0.574089 7_3:-37543074 Msa1102930:CDS
GCGGTGGCGGAGGTATTCAA+TGG 0.575958 7_3:-37543106 Msa1102930:CDS
ATGTAATCAAATTCCCTGAT+CGG 0.578666 7_3:-37543175 Msa1102930:five_prime_UTR
TCCTACCGTAAGGGTCACGC+AGG 0.579417 7_3:-37543038 Msa1102930:CDS
GTGGATGATCTCATTGAAGC+TGG 0.610236 7_3:-37539751 Msa1102930:CDS
GCAACAGTGAAAGCTTTCAA+AGG 0.622832 7_3:+37542999 None:intergenic
GGAGGTATTCAATGGTTGTG+GGG 0.638828 7_3:-37543098 Msa1102930:CDS
CCTACCGTAAGGGTCACGCA+GGG 0.638901 7_3:-37543037 Msa1102930:CDS
ACTTACTTATTCGATGTGCG+TGG 0.654486 7_3:+37539697 None:intergenic
ATATGACTGCTTCTCCAACA+AGG 0.654541 7_3:+37539189 None:intergenic
GGTGTACGTTCCTACCGTAA+GGG 0.654623 7_3:-37543047 Msa1102930:CDS
TCATGCTAATGGCATTCATG+GGG 0.655959 7_3:-37542931 Msa1102930:intron
TGAAAGCTTTCAAAGGCATG+AGG 0.656004 7_3:+37543006 None:intergenic
TACATGTATGTATTGATCAG+GGG 0.672031 7_3:+37543193 None:intergenic
CCCTGCGTGACCCTTACGGT+AGG 0.682120 7_3:+37543037 None:intergenic
CTACCGTAAGGGTCACGCAG+GGG 0.696767 7_3:-37543036 Msa1102930:CDS
GATCGGTGAAAATCACAGCA+CGG 0.698026 7_3:-37543158 Msa1102930:five_prime_UTR
TCAATGGAGGAAGTAACCGG+TGG 0.732327 7_3:-37543131 Msa1102930:CDS
ACAGCACGGAGATTCAATGG+AGG 0.733659 7_3:-37543144 Msa1102930:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAATAGTATATTTTGTT+TGG - chr7_3:37542743-37542762 Msa1102930:intron 10.0%
!!! ATATTTTAGGTTTAAGAAAA+AGG + chr7_3:37541909-37541928 None:intergenic 15.0%
!! TTTCAGTAAAATAAAATGTA+TGG - chr7_3:37542175-37542194 Msa1102930:intron 15.0%
!! GATAAAAATTAATCTTTAAC+AGG + chr7_3:37542670-37542689 None:intergenic 15.0%
!! TTAAGAGTAAAAACTCAATT+TGG - chr7_3:37539160-37539179 Msa1102930:three_prime_UTR 20.0%
!!! AGTAATTTGTCAACTAATTT+GGG + chr7_3:37539236-37539255 None:intergenic 20.0%
!! ATAAGAATAAAAACCCAATA+TGG + chr7_3:37539340-37539359 None:intergenic 20.0%
!! AACCTATGATATAAAGAAAA+CGG + chr7_3:37539917-37539936 None:intergenic 20.0%
!! TAAAATTACATTCCATTTCA+TGG + chr7_3:37540093-37540112 None:intergenic 20.0%
!! ATTTATACGAAATTACTTTG+AGG - chr7_3:37540568-37540587 Msa1102930:intron 20.0%
!! TTTATACGAAATTACTTTGA+GGG - chr7_3:37540569-37540588 Msa1102930:intron 20.0%
!!! TATACTTTTATGTGTCTTTT+TGG + chr7_3:37540666-37540685 None:intergenic 20.0%
!!! ATGTTTCTATTATAAAAGAG+AGG - chr7_3:37540870-37540889 Msa1102930:intron 20.0%
!!! TGTTTCTATTATAAAAGAGA+GGG - chr7_3:37540871-37540890 Msa1102930:intron 20.0%
!! TGTTAACATTTCAATTTACA+AGG - chr7_3:37541571-37541590 Msa1102930:intron 20.0%
!! ATTTATGCAAAAAGCTAAAA+AGG - chr7_3:37541987-37542006 Msa1102930:intron 20.0%
!! TCAGAAAAAAATTTGAACAT+TGG - chr7_3:37542430-37542449 Msa1102930:intron 20.0%
!!! AAAAATTTGAACATTGGTTT+TGG - chr7_3:37542436-37542455 Msa1102930:intron 20.0%
!! TCTTTATAAATTCTTCTAGT+AGG - chr7_3:37542627-37542646 Msa1102930:intron 20.0%
!!! GCGTTTTTTTAATTACTTAT+TGG - chr7_3:37542709-37542728 Msa1102930:intron 20.0%
!!! ATAGTATATTTTGTTTGGAT+AGG - chr7_3:37542748-37542767 Msa1102930:intron 20.0%
!! AAAGTTGCATAAAAATATGT+TGG - chr7_3:37543193-37543212 Msa1102930:five_prime_UTR 20.0%
!! AAGTTGCATAAAAATATGTT+GGG - chr7_3:37543194-37543213 Msa1102930:five_prime_UTR 20.0%
! AGTACAAACAAAGAACAAAA+AGG - chr7_3:37538794-37538813 Msa1102930:three_prime_UTR 25.0%
!! TTACATGTATGTATTGATCA+GGG + chr7_3:37538834-37538853 None:intergenic 25.0%
!! ATTACATGTATGTATTGATC+AGG + chr7_3:37538835-37538854 None:intergenic 25.0%
!! GAGTAATTTGTCAACTAATT+TGG + chr7_3:37539237-37539256 None:intergenic 25.0%
!!! TTGAGTATTATGTTTTAGTC+AGG - chr7_3:37539281-37539300 Msa1102930:intron 25.0%
!!! TGAGTATTATGTTTTAGTCA+GGG - chr7_3:37539282-37539301 Msa1102930:intron 25.0%
! TTGTTTGTGATGTTATTAGT+TGG - chr7_3:37539386-37539405 Msa1102930:intron 25.0%
!!! TTGGTTAAGGTTTTAAATTG+CGG - chr7_3:37539405-37539424 Msa1102930:intron 25.0%
!! TTCCGTTTTCTTTATATCAT+AGG - chr7_3:37539912-37539931 Msa1102930:intron 25.0%
! CTTTATATCATAGGTTTAGA+TGG - chr7_3:37539921-37539940 Msa1102930:intron 25.0%
! AGGTTTAGATGGTATTATAA+AGG - chr7_3:37539932-37539951 Msa1102930:intron 25.0%
!! CAAACCAAAATTTAAAACTC+TGG - chr7_3:37540059-37540078 Msa1102930:intron 25.0%
!!! TTTGTTTTGTATTGAGGAAA+AGG - chr7_3:37540259-37540278 Msa1102930:intron 25.0%
!!! TTGTTTTGTATTGAGGAAAA+GGG - chr7_3:37540260-37540279 Msa1102930:intron 25.0%
!!! ATTGTGAAATTGGTTTTTAG+TGG - chr7_3:37540317-37540336 Msa1102930:intron 25.0%
! TTTGATTATCTGTGTTTCAT+TGG - chr7_3:37540498-37540517 Msa1102930:intron 25.0%
! AGAAACATTCCTAAAATTCA+GGG + chr7_3:37540858-37540877 None:intergenic 25.0%
! TAGAAACATTCCTAAAATTC+AGG + chr7_3:37540859-37540878 None:intergenic 25.0%
! GAATAGTGGTAAAATAGAAA+AGG + chr7_3:37541009-37541028 None:intergenic 25.0%
!! GATTTTACCTTACACTTAAA+TGG - chr7_3:37541136-37541155 Msa1102930:intron 25.0%
! GTATAATCAAGACTAAGTTT+AGG - chr7_3:37541205-37541224 Msa1102930:intron 25.0%
! AGTATATGACAAGTATATCA+AGG - chr7_3:37541251-37541270 Msa1102930:intron 25.0%
! TTGAAAACTAGTGATAGAAT+TGG - chr7_3:37541294-37541313 Msa1102930:intron 25.0%
!!! TCTTTGTTTTAACTTAATGC+TGG + chr7_3:37541373-37541392 None:intergenic 25.0%
! ATTTAGGAATTTCAAAGAGA+AGG - chr7_3:37541404-37541423 Msa1102930:intron 25.0%
! TTTACTATACTGCTCTTAAT+TGG - chr7_3:37541865-37541884 Msa1102930:intron 25.0%
! TCTTAAACCTAAAATATTGC+AGG - chr7_3:37541912-37541931 Msa1102930:intron 25.0%
! TACTACATGTTATTACGTAT+AGG - chr7_3:37542250-37542269 Msa1102930:intron 25.0%
! TTATATCTTACTCTATGCAT+GGG + chr7_3:37542554-37542573 None:intergenic 25.0%
! TTTATATCTTACTCTATGCA+TGG + chr7_3:37542555-37542574 None:intergenic 25.0%
!!! ATTTTGTTTGGATAGGAATA+TGG - chr7_3:37542755-37542774 Msa1102930:intron 25.0%
! AGTAGAATCAAGTTTGATAT+AGG - chr7_3:37543116-37543135 Msa1102930:CDS 25.0%
!! ATTTTTATGCAACTTTGTCA+TGG + chr7_3:37543189-37543208 None:intergenic 25.0%
! TGAATAAAAGTCATTCTAAG+TGG + chr7_3:37543228-37543247 None:intergenic 25.0%
! ATTCACTTCAATTATGTCAT+TGG - chr7_3:37543243-37543262 Msa1102930:five_prime_UTR 25.0%
! TACATGTATGTATTGATCAG+GGG + chr7_3:37538833-37538852 None:intergenic 30.0%
ATGTAATCAAATTCCCTGAT+CGG - chr7_3:37538848-37538867 Msa1102930:three_prime_UTR 30.0%
!! ACTGTTGCTTCTCTTTTTAT+TGG - chr7_3:37539039-37539058 Msa1102930:three_prime_UTR 30.0%
! GTTTTCATTCTTCATGCTAA+TGG - chr7_3:37539081-37539100 Msa1102930:three_prime_UTR 30.0%
!! TCACTGTCTTTGAAATTTCT+TGG - chr7_3:37539126-37539145 Msa1102930:three_prime_UTR 30.0%
AAAATAGTGAAGGACCATAT+TGG - chr7_3:37539323-37539342 Msa1102930:intron 30.0%
AAATAGTGAAGGACCATATT+GGG - chr7_3:37539324-37539343 Msa1102930:intron 30.0%
GTGATGTTATTAGTTGGTTA+AGG - chr7_3:37539392-37539411 Msa1102930:intron 30.0%
ATAATCATATGTGTCAGTGT+TGG + chr7_3:37539788-37539807 None:intergenic 30.0%
!!! TAAATTTTGGTTTGCATCAC+CGG + chr7_3:37540053-37540072 None:intergenic 30.0%
!!! CCAACCAGAGTTTTAAATTT+TGG + chr7_3:37540066-37540085 None:intergenic 30.0%
! CCAAAATTTAAAACTCTGGT+TGG - chr7_3:37540063-37540082 Msa1102930:intron 30.0%
GCATAAAAGAGATCTTAGAA+GGG - chr7_3:37540204-37540223 Msa1102930:intron 30.0%
!!! TGTGTGTTTGTTTTGTATTG+AGG - chr7_3:37540253-37540272 Msa1102930:intron 30.0%
! ATTTGGAGTGATAATGTTAG+CGG - chr7_3:37540286-37540305 Msa1102930:intron 30.0%
GGAAAAGTGAATTGTGAAAT+TGG - chr7_3:37540307-37540326 Msa1102930:intron 30.0%
!!! AAATTGGTTTTTAGTGGTTG+TGG - chr7_3:37540323-37540342 Msa1102930:intron 30.0%
!!! AATTGGTTTTTAGTGGTTGT+GGG - chr7_3:37540324-37540343 Msa1102930:intron 30.0%
GTTGATTGTATGACTACAAT+AGG - chr7_3:37540421-37540440 Msa1102930:intron 30.0%
GAGTGAAAGTGAATTTGATA+TGG - chr7_3:37540473-37540492 Msa1102930:intron 30.0%
AAATTATAACCGTACGACAT+AGG + chr7_3:37540552-37540571 None:intergenic 30.0%
!! TTTATGTGTCTTTTTGGTAG+CGG + chr7_3:37540660-37540679 None:intergenic 30.0%
AACTAACACTTATTGGACTA+AGG + chr7_3:37540826-37540845 None:intergenic 30.0%
TTAGTCCAATAAGTGTTAGT+TGG - chr7_3:37540825-37540844 Msa1102930:intron 30.0%
TAGTCCAATAAGTGTTAGTT+GGG - chr7_3:37540826-37540845 Msa1102930:intron 30.0%
TATTCCCAACTAACACTTAT+TGG + chr7_3:37540833-37540852 None:intergenic 30.0%
ATAGTATTGTGTAACTCATG+AGG - chr7_3:37540895-37540914 Msa1102930:intron 30.0%
! AAATATGCTTAGAGTTGGTT+AGG - chr7_3:37540918-37540937 Msa1102930:intron 30.0%
GAAACTGTACTATTGAATAG+TGG + chr7_3:37541023-37541042 None:intergenic 30.0%
ATGATAAAATCCAGAAGAGT+GGG + chr7_3:37541076-37541095 None:intergenic 30.0%
TATCAAGGTCGATAATGAAA+AGG - chr7_3:37541266-37541285 Msa1102930:intron 30.0%
AAAGATTACGCGCATAATTT+AGG - chr7_3:37541388-37541407 Msa1102930:intron 30.0%
CATTTCAATTTACAAGGCAA+TGG - chr7_3:37541577-37541596 Msa1102930:intron 30.0%
TCAGAAACTTAGATCTAAAC+TGG + chr7_3:37541744-37541763 None:intergenic 30.0%
TAAATTATCTGATGACTGAC+TGG - chr7_3:37541785-37541804 Msa1102930:intron 30.0%
! GTTATGACCTGCAATATTTT+AGG + chr7_3:37541922-37541941 None:intergenic 30.0%
!! TGTTATTTCACTGTTTGTGA+TGG - chr7_3:37541943-37541962 Msa1102930:intron 30.0%
AACAATTATGCCTTATGATC+TGG + chr7_3:37542016-37542035 None:intergenic 30.0%
!! AAGGCATAATTGTTACTTTG+AGG - chr7_3:37542022-37542041 Msa1102930:intron 30.0%
TTTACTGAAAACAACTCGAA+AGG + chr7_3:37542165-37542184 None:intergenic 30.0%
TACATGTTATTACGTATAGG+TGG - chr7_3:37542253-37542272 Msa1102930:intron 30.0%
CCAATTTAAGAGCTAAACTT+GGG - chr7_3:37542297-37542316 Msa1102930:intron 30.0%
CTCTCTATCACAACTAAAAA+TGG - chr7_3:37542499-37542518 Msa1102930:intron 30.0%
TCACATCTTGTGATATTACT+TGG - chr7_3:37542801-37542820 Msa1102930:intron 30.0%
ATCAAACCTTTAACCTTTCA+AGG + chr7_3:37542877-37542896 None:intergenic 30.0%
CAAACAAAATTGCCATCAAT+TGG + chr7_3:37542940-37542959 None:intergenic 30.0%
AATGAAAACAGAAGCAGAAG+CGG + chr7_3:37539070-37539089 None:intergenic 35.0%
TTCATGCTAATGGCATTCAT+GGG - chr7_3:37539091-37539110 Msa1102930:three_prime_UTR 35.0%
TGTTTGTCAGGAACAAAATC+AGG + chr7_3:37539205-37539224 None:intergenic 35.0%
TGGGTATCATATTGTTTGTC+AGG + chr7_3:37539217-37539236 None:intergenic 35.0%
GTAACCGCAACTTAAAACAA+TGG + chr7_3:37539445-37539464 None:intergenic 35.0%
TACGCTGCAAAAATCCTTTA+TGG - chr7_3:37539462-37539481 Msa1102930:intron 35.0%
ACGCTGCAAAAATCCTTTAT+GGG - chr7_3:37539463-37539482 Msa1102930:intron 35.0%
! TCACAAGACAAAGGATTTTG+AGG + chr7_3:37539538-37539557 None:intergenic 35.0%
! GTAGTAGATGCATTTTGCAA+CGG - chr7_3:37539659-37539678 Msa1102930:intron 35.0%
! TGCAATGTGTATTGATGTTG+TGG + chr7_3:37540008-37540027 None:intergenic 35.0%
!!! AAATTTTGGTTTGCATCACC+GGG + chr7_3:37540052-37540071 None:intergenic 35.0%
ATTCAGAGTTATGTCAGTTG+TGG - chr7_3:37540182-37540201 Msa1102930:intron 35.0%
GGCATAAAAGAGATCTTAGA+AGG - chr7_3:37540203-37540222 Msa1102930:intron 35.0%
ATTGAGGAAAAGGGATGATT+TGG - chr7_3:37540269-37540288 Msa1102930:intron 35.0%
!! TTTTTAGTGGTTGTGGGTTT+TGG - chr7_3:37540330-37540349 Msa1102930:intron 35.0%
CTTATGTCCTAAGGTAATCA+TGG - chr7_3:37540449-37540468 Msa1102930:intron 35.0%
ATCTGTGTTTCATTGGATTC+TGG - chr7_3:37540505-37540524 Msa1102930:intron 35.0%
! ACAAAAAGAGCAAGGTATCT+TGG - chr7_3:37540626-37540645 Msa1102930:intron 35.0%
!! TTATGTGTCTTTTTGGTAGC+GGG + chr7_3:37540659-37540678 None:intergenic 35.0%
AAGATGAAATCATGTCAACC+AGG - chr7_3:37540703-37540722 Msa1102930:intron 35.0%
! CATTTCTAGAAGCATAATCC+TGG + chr7_3:37540724-37540743 None:intergenic 35.0%
! TTCACACTCTTTAGGTTTGT+GGG - chr7_3:37540775-37540794 Msa1102930:intron 35.0%
! GGGAATATTCCCTGAATTTT+AGG - chr7_3:37540846-37540865 Msa1102930:intron 35.0%
TGAGGAAATATGCTTAGAGT+TGG - chr7_3:37540913-37540932 Msa1102930:intron 35.0%
GATGATAAAATCCAGAAGAG+TGG + chr7_3:37541077-37541096 None:intergenic 35.0%
AGGAATTTCAAAGAGAAGGA+TGG - chr7_3:37541408-37541427 Msa1102930:intron 35.0%
TTGTAAATTGAAAGTCGTGC+TGG - chr7_3:37541545-37541564 Msa1102930:intron 35.0%
TGTAAATTGAAAGTCGTGCT+GGG - chr7_3:37541546-37541565 Msa1102930:intron 35.0%
GTAAATGTACAAAGTGCAAG+TGG - chr7_3:37541681-37541700 Msa1102930:intron 35.0%
TAAGAGCAGTATAGTAAACC+TGG + chr7_3:37541863-37541882 None:intergenic 35.0%
!! GTGATGGATAATACTACAGA+TGG - chr7_3:37541959-37541978 Msa1102930:intron 35.0%
AAAAAGGAAGCCAGATCATA+AGG - chr7_3:37542003-37542022 Msa1102930:intron 35.0%
CACATCTTCTGTTCAAACAA+CGG + chr7_3:37542057-37542076 None:intergenic 35.0%
GCCAATTTAAGAGCTAAACT+TGG - chr7_3:37542296-37542315 Msa1102930:intron 35.0%
!! CCCAAGTTTAGCTCTTAAAT+TGG + chr7_3:37542300-37542319 None:intergenic 35.0%
GAAGATAGAAGTTAACTAGC+TGG + chr7_3:37542480-37542499 None:intergenic 35.0%
ACAAGATGTGAATGAGCATT+TGG + chr7_3:37542792-37542811 None:intergenic 35.0%
CATCTTGTGATATTACTTGG+TGG - chr7_3:37542804-37542823 Msa1102930:intron 35.0%
! GAAGCAGTCATATCATTTTG+TGG - chr7_3:37542844-37542863 Msa1102930:intron 35.0%
GAGATACTACATCCAATTGA+TGG - chr7_3:37542925-37542944 Msa1102930:intron 35.0%
ATCGATGACAATGTATTGCA+AGG + chr7_3:37542990-37543009 None:intergenic 35.0%
TTTCATTGATCTTAGTCAGC+CGG - chr7_3:37543018-37543037 Msa1102930:CDS 35.0%
TGCTATGAAGTGAGTTGTTA+AGG - chr7_3:37543088-37543107 Msa1102930:CDS 35.0%
TTGTACTGTTCTGTTGCACT+TGG + chr7_3:37538781-37538800 None:intergenic 40.0%
GATTCAATGGAGGAAGTAAC+CGG - chr7_3:37538889-37538908 Msa1102930:three_prime_UTR 40.0%
! TGAAAGCTTTCAAAGGCATG+AGG + chr7_3:37539020-37539039 None:intergenic 40.0%
GCAACAGTGAAAGCTTTCAA+AGG + chr7_3:37539027-37539046 None:intergenic 40.0%
CTTCATGCTAATGGCATTCA+TGG - chr7_3:37539090-37539109 Msa1102930:three_prime_UTR 40.0%
TCATGCTAATGGCATTCATG+GGG - chr7_3:37539092-37539111 Msa1102930:three_prime_UTR 40.0%
!! GTTTTAGTCAGGGACTAAGT+CGG - chr7_3:37539292-37539311 Msa1102930:intron 40.0%
! TTTTAGTCAGGGACTAAGTC+GGG - chr7_3:37539293-37539312 Msa1102930:intron 40.0%
TTTAAATTGCGGATCGCATC+AGG - chr7_3:37539416-37539435 Msa1102930:intron 40.0%
!!! GACGCCATTGTTTTAAGTTG+CGG - chr7_3:37539438-37539457 Msa1102930:intron 40.0%
CTGACTGCAAATTCCCATAA+AGG + chr7_3:37539479-37539498 None:intergenic 40.0%
ATCACAGCACAATTGTGATG+CGG + chr7_3:37539589-37539608 None:intergenic 40.0%
!! CCTTTGAAGCAAATACTCCT+CGG - chr7_3:37539716-37539735 Msa1102930:CDS 40.0%
AAGCAAATACTCCTCGGATT+AGG - chr7_3:37539722-37539741 Msa1102930:CDS 40.0%
ACTGAGTGAAAGTGGTTCAT+AGG - chr7_3:37540157-37540176 Msa1102930:intron 40.0%
CTGAGTGAAAGTGGTTCATA+GGG - chr7_3:37540158-37540177 Msa1102930:intron 40.0%
AGATCTTAGAAGGGTTCTGT+TGG - chr7_3:37540213-37540232 Msa1102930:intron 40.0%
TGGAAGTAGAAGATTGAGCT+TGG - chr7_3:37540353-37540372 Msa1102930:intron 40.0%
TAGAAGATTGAGCTTGGAAG+AGG - chr7_3:37540359-37540378 Msa1102930:intron 40.0%
TAGGACGAACTTATGTCCTA+AGG - chr7_3:37540440-37540459 Msa1102930:intron 40.0%
TCACTCTCCATGATTACCTT+AGG + chr7_3:37540459-37540478 None:intergenic 40.0%
GTTTCATTGGATTCTGGTGA+TGG - chr7_3:37540511-37540530 Msa1102930:intron 40.0%
!! GAAATTACTTTGAGGGTGCT+GGG - chr7_3:37540576-37540595 Msa1102930:intron 40.0%
GAGTAGTGACAAAAAGAGCA+AGG - chr7_3:37540618-37540637 Msa1102930:intron 40.0%
ACCAACTGTTCACACTCTTT+AGG - chr7_3:37540767-37540786 Msa1102930:intron 40.0%
! ACCTAAAGAGTGTGAACAGT+TGG + chr7_3:37540771-37540790 None:intergenic 40.0%
! GTTCACACTCTTTAGGTTTG+TGG - chr7_3:37540774-37540793 Msa1102930:intron 40.0%
TAGGTTTGTGGGAACTTGAT+AGG - chr7_3:37540786-37540805 Msa1102930:intron 40.0%
ACTTGATAGGATCCTGAGTT+TGG - chr7_3:37540799-37540818 Msa1102930:intron 40.0%
CTTGATAGGATCCTGAGTTT+GGG - chr7_3:37540800-37540819 Msa1102930:intron 40.0%
TGGTTAGCAACATTGTGTTC+TGG - chr7_3:37540953-37540972 Msa1102930:intron 40.0%
TAGCAACATTGTGTTCTGGT+AGG - chr7_3:37540957-37540976 Msa1102930:intron 40.0%
AACAAAGCAAGTCACAGATG+AGG + chr7_3:37541113-37541132 None:intergenic 40.0%
CTCAGCTCCATTTAAGTGTA+AGG + chr7_3:37541146-37541165 None:intergenic 40.0%
ATGGAGCTGAGTTCAATCTT+CGG - chr7_3:37541155-37541174 Msa1102930:intron 40.0%
CTTGTCATATACTCTGCGTT+TGG + chr7_3:37541244-37541263 None:intergenic 40.0%
GTAAATTGAAAGTCGTGCTG+GGG - chr7_3:37541547-37541566 Msa1102930:intron 40.0%
AATTTACAAGGCAATGGCCA+TGG - chr7_3:37541583-37541602 Msa1102930:intron 40.0%
ATTTACAAGGCAATGGCCAT+GGG - chr7_3:37541584-37541603 Msa1102930:intron 40.0%
GGAACAGCTAACAGTAATCA+AGG + chr7_3:37541647-37541666 None:intergenic 40.0%
CATTTACGCACATCCACTTA+GGG + chr7_3:37541668-37541687 None:intergenic 40.0%
ACATTTACGCACATCCACTT+AGG + chr7_3:37541669-37541688 None:intergenic 40.0%
! ACTGCTCTTAATTGGTAGCT+TGG - chr7_3:37541873-37541892 Msa1102930:intron 40.0%
ATGTTCTGCATACATGAGTG+TGG - chr7_3:37542130-37542149 Msa1102930:intron 40.0%
ACTTACTTATTCGATGTGCG+TGG + chr7_3:37542329-37542348 None:intergenic 40.0%
! AACTAGCTGGAGTACACTTT+TGG + chr7_3:37542467-37542486 None:intergenic 40.0%
TATCTTACTCTATGCATGGG+AGG + chr7_3:37542551-37542570 None:intergenic 40.0%
!! TGTGATATTACTTGGTGGTG+TGG - chr7_3:37542809-37542828 Msa1102930:intron 40.0%
ATATGACTGCTTCTCCAACA+AGG + chr7_3:37542837-37542856 None:intergenic 40.0%
! AGTCATATCATTTTGTGGCG+CGG - chr7_3:37542849-37542868 Msa1102930:intron 40.0%
! GCTGTGATTTTCACCGATCA+GGG + chr7_3:37538864-37538883 None:intergenic 45.0%
! TGCTGTGATTTTCACCGATC+AGG + chr7_3:37538865-37538884 None:intergenic 45.0%
GATCGGTGAAAATCACAGCA+CGG - chr7_3:37538865-37538884 Msa1102930:three_prime_UTR 45.0%
ATCACAGCACGGAGATTCAA+TGG - chr7_3:37538876-37538895 Msa1102930:three_prime_UTR 45.0%
!! CGGAGGTATTCAATGGTTGT+GGG - chr7_3:37538924-37538943 Msa1102930:three_prime_UTR 45.0%
!! GGAGGTATTCAATGGTTGTG+GGG - chr7_3:37538925-37538944 Msa1102930:three_prime_UTR 45.0%
TGTAGCTAGTGCAGCTCAAA+TGG - chr7_3:37538948-37538967 Msa1102930:three_prime_UTR 45.0%
GTAGCTAGTGCAGCTCAAAT+GGG - chr7_3:37538949-37538968 Msa1102930:three_prime_UTR 45.0%
TAGTGCAGCTCAAATGGGAT+TGG - chr7_3:37538954-37538973 Msa1102930:three_prime_UTR 45.0%
AGTGCAGCTCAAATGGGATT+GGG - chr7_3:37538955-37538974 Msa1102930:three_prime_UTR 45.0%
TCAGGCTACACGAAATTGTG+AGG + chr7_3:37539187-37539206 None:intergenic 45.0%
ATAGCGCAGTCACAAGACAA+AGG + chr7_3:37539547-37539566 None:intergenic 45.0%
!! CCGAGGAGTATTTGCTTCAA+AGG + chr7_3:37539719-37539738 None:intergenic 45.0%
TGCCTGAGTTTGTGCTTGAT+AGG - chr7_3:37539867-37539886 Msa1102930:intron 45.0%
CACCTATCAAGCACAAACTC+AGG + chr7_3:37539872-37539891 None:intergenic 45.0%
CTGAGTTTGTGCTTGATAGG+TGG - chr7_3:37539870-37539889 Msa1102930:intron 45.0%
ACTGCAAAAGACCACAATCC+CGG - chr7_3:37540031-37540050 Msa1102930:intron 45.0%
!! CTGGTTGGCTTACCATGAAA+TGG - chr7_3:37540078-37540097 Msa1102930:intron 45.0%
TTTGTGGGACTGAGTGAAAG+TGG - chr7_3:37540149-37540168 Msa1102930:intron 45.0%
! TAGAAGGGTTCTGTTGGTTG+TGG - chr7_3:37540219-37540238 Msa1102930:intron 45.0%
!! TTAGTGGTTGTGGGTTTTGG+TGG - chr7_3:37540333-37540352 Msa1102930:intron 45.0%
!! ATTGGATTCTGGTGATGGCA+GGG - chr7_3:37540516-37540535 Msa1102930:intron 45.0%
GATCTGCTTCCTATGTCGTA+CGG - chr7_3:37540540-37540559 Msa1102930:intron 45.0%
! CGAAATTACTTTGAGGGTGC+TGG - chr7_3:37540575-37540594 Msa1102930:intron 45.0%
TGGTTAGGAGAGTTTCTCTC+TGG - chr7_3:37540933-37540952 Msa1102930:intron 45.0%
TGGAGCTGAGTTCAATCTTC+GGG - chr7_3:37541156-37541175 Msa1102930:intron 45.0%
! GACAAAGCTGTCATTTGACG+CGG - chr7_3:37541479-37541498 Msa1102930:intron 45.0%
ACACACATCCACTGAGTGAA+GGG + chr7_3:37541620-37541639 None:intergenic 45.0%
ACTGTTAGCTGTTCCCTAAG+TGG - chr7_3:37541652-37541671 Msa1102930:intron 45.0%
TTTGGTTGAACCTGTCGTAC+TGG - chr7_3:37541827-37541846 Msa1102930:intron 45.0%
GCAGTATAGTAAACCTGGAC+AGG + chr7_3:37541858-37541877 None:intergenic 45.0%
GTGGATGATCTCATTGAAGC+TGG - chr7_3:37542272-37542291 Msa1102930:intron 45.0%
GCGGTTCCTTGAAAGGTTAA+AGG - chr7_3:37542868-37542887 Msa1102930:intron 45.0%
! CTTAGTCAGCCGGAACTTTT+AGG - chr7_3:37543028-37543047 Msa1102930:CDS 45.0%
CTAAGCGAGCCTAAAAGTTC+CGG + chr7_3:37543040-37543059 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG - chr7_3:37540133-37540152 Msa1102930:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTGT+GGG - chr7_3:37540134-37540153 Msa1102930:intron 5.0%
ACAGCACGGAGATTCAATGG+AGG - chr7_3:37538879-37538898 Msa1102930:three_prime_UTR 50.0%
TCAATGGAGGAAGTAACCGG+TGG - chr7_3:37538892-37538911 Msa1102930:three_prime_UTR 50.0%
!! GCGGAGGTATTCAATGGTTG+TGG - chr7_3:37538923-37538942 Msa1102930:three_prime_UTR 50.0%
GGTGTACGTTCCTACCGTAA+GGG - chr7_3:37538976-37538995 Msa1102930:three_prime_UTR 50.0%
GGGCTGCTCGAAAATAGTGA+AGG - chr7_3:37539313-37539332 Msa1102930:intron 50.0%
! CATTTTGCAACGGCCACATC+AGG - chr7_3:37539669-37539688 Msa1102930:intron 50.0%
TAGTCTGCTTCAGCCTGATG+TGG + chr7_3:37539685-37539704 None:intergenic 50.0%
GGCTGAAGCAGACTATATCG+TGG - chr7_3:37539690-37539709 Msa1102930:intron 50.0%
!! TGTCAGTGTTGGTGTCGTGT+CGG + chr7_3:37539777-37539796 None:intergenic 50.0%
! CGATGTGTCCTTGTTGTGTC+CGG - chr7_3:37539838-37539857 Msa1102930:intron 50.0%
ACAAACTCAGGCACAGACAC+CGG + chr7_3:37539860-37539879 None:intergenic 50.0%
!! CATTGGATTCTGGTGATGGC+AGG - chr7_3:37540515-37540534 Msa1102930:intron 50.0%
CTGGGCATGTGACGAATATG+TGG - chr7_3:37540594-37540613 Msa1102930:intron 50.0%
!!! TGTGTCTTTTTGGTAGCGGG+TGG + chr7_3:37540656-37540675 None:intergenic 50.0%
TTGGACTAAGGCCCAAACTC+AGG + chr7_3:37540814-37540833 None:intergenic 50.0%
TCCATCAGAACCCACTCTTC+TGG - chr7_3:37541063-37541082 Msa1102930:intron 50.0%
! TCCAGAAGAGTGGGTTCTGA+TGG + chr7_3:37541067-37541086 None:intergenic 50.0%
CAGATGAGGCTACTGTCTGA+GGG + chr7_3:37541099-37541118 None:intergenic 50.0%
ACAGATGAGGCTACTGTCTG+AGG + chr7_3:37541100-37541119 None:intergenic 50.0%
GGAGCTGAGTTCAATCTTCG+GGG - chr7_3:37541157-37541176 Msa1102930:intron 50.0%
TTGCAACTCTGTCGTCTGTC+AGG + chr7_3:37541512-37541531 None:intergenic 50.0%
CGAACTTTCCCTTCACTCAG+TGG - chr7_3:37541609-37541628 Msa1102930:intron 50.0%
GACACACATCCACTGAGTGA+AGG + chr7_3:37541621-37541640 None:intergenic 50.0%
CGACAGGTTCAACCAAACAC+CGG + chr7_3:37541824-37541843 None:intergenic 50.0%
ACAGGATTGACCAGTACGAC+AGG + chr7_3:37541840-37541859 None:intergenic 50.0%
TGGGAGGCTGAGATGTCATT+TGG + chr7_3:37542535-37542554 None:intergenic 50.0%
!! TTGGTGGTGTGGTTCCTTGT+TGG - chr7_3:37542820-37542839 Msa1102930:intron 50.0%
ATGGAGGAAGTAACCGGTGG+CGG - chr7_3:37538895-37538914 Msa1102930:three_prime_UTR 55.0%
GGGTGTACGTTCCTACCGTA+AGG - chr7_3:37538975-37538994 Msa1102930:three_prime_UTR 55.0%
AATCCCCTGCGTGACCCTTA+CGG + chr7_3:37538993-37539012 None:intergenic 55.0%
! TCCTCGGATTAGGTGTGTCC+TGG - chr7_3:37539732-37539751 Msa1102930:CDS 55.0%
ACCAGGACACACCTAATCCG+AGG + chr7_3:37539736-37539755 None:intergenic 55.0%
GATTAGGTGTGTCCTGGTGC+TGG - chr7_3:37539738-37539757 Msa1102930:CDS 55.0%
CACAACACGTATCCAGCACC+AGG + chr7_3:37539753-37539772 None:intergenic 55.0%
CACAGACACCGGACACAACA+AGG + chr7_3:37539849-37539868 None:intergenic 55.0%
GGTTTGCATCACCGGGATTG+TGG + chr7_3:37540045-37540064 None:intergenic 55.0%
GAAGGGAAAGTTCGCTCCCA+TGG + chr7_3:37541603-37541622 None:intergenic 55.0%
CTGATGACTGACTGGACCAG+TGG - chr7_3:37541793-37541812 Msa1102930:intron 55.0%
! CGTACTGGTCAATCCTGTCC+AGG - chr7_3:37541842-37541861 Msa1102930:intron 55.0%
TTGTGGCGCGGTTCCTTGAA+AGG - chr7_3:37542861-37542880 Msa1102930:intron 55.0%
!! GCGGTGGCGGAGGTATTCAA+TGG - chr7_3:37538917-37538936 Msa1102930:three_prime_UTR 60.0%
TCCTACCGTAAGGGTCACGC+AGG - chr7_3:37538985-37539004 Msa1102930:three_prime_UTR 60.0%
CCTACCGTAAGGGTCACGCA+GGG - chr7_3:37538986-37539005 Msa1102930:three_prime_UTR 60.0%
CTACCGTAAGGGTCACGCAG+GGG - chr7_3:37538987-37539006 Msa1102930:three_prime_UTR 60.0%
TGACTGACTGGACCAGTGGC+AGG - chr7_3:37541797-37541816 Msa1102930:intron 60.0%
! GAGGAAGTAACCGGTGGCGG+CGG - chr7_3:37538898-37538917 Msa1102930:three_prime_UTR 65.0%
CCCTGCGTGACCCTTACGGT+AGG + chr7_3:37538989-37539008 None:intergenic 65.0%
GACTGGACCAGTGGCAGGTC+CGG - chr7_3:37541802-37541821 Msa1102930:intron 65.0%
CCAAACACCGGACCTGCCAC+TGG + chr7_3:37541812-37541831 None:intergenic 65.0%
CCAGTGGCAGGTCCGGTGTT+TGG - chr7_3:37541809-37541828 Msa1102930:intron 65.0%
! GAAGTAACCGGTGGCGGCGG+TGG - chr7_3:37538901-37538920 Msa1102930:three_prime_UTR 70.0%
! GTAACCGGTGGCGGCGGTGG+CGG - chr7_3:37538904-37538923 Msa1102930:three_prime_UTR 75.0%
! ACCTCCGCCACCGCCGCCAC+CGG + chr7_3:37538911-37538930 None:intergenic 80.0%
!! ACCGGTGGCGGCGGTGGCGG+AGG - chr7_3:37538907-37538926 Msa1102930:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 37538751 37543294 37538751 ID=Msa1102930;Name=Msa1102930
chr7_3 mRNA 37538751 37543294 37538751 ID=Msa1102930-mRNA-1;Parent=Msa1102930;Name=Msa1102930-mRNA-1;_AED=0.07;_eAED=0.07;_QI=144|1|1|1|0.5|0.66|3|506|102
chr7_3 exon 37538751 37539275 37538751 ID=Msa1102930-mRNA-1:exon:7725;Parent=Msa1102930-mRNA-1
chr7_3 exon 37539703 37539773 37539703 ID=Msa1102930-mRNA-1:exon:7724;Parent=Msa1102930-mRNA-1
chr7_3 exon 37542932 37543294 37542932 ID=Msa1102930-mRNA-1:exon:7723;Parent=Msa1102930-mRNA-1
chr7_3 five_prime_UTR 37543151 37543294 37543151 ID=Msa1102930-mRNA-1:five_prime_utr;Parent=Msa1102930-mRNA-1
chr7_3 CDS 37542932 37543150 37542932 ID=Msa1102930-mRNA-1:cds;Parent=Msa1102930-mRNA-1
chr7_3 CDS 37539703 37539773 37539703 ID=Msa1102930-mRNA-1:cds;Parent=Msa1102930-mRNA-1
chr7_3 CDS 37539257 37539275 37539257 ID=Msa1102930-mRNA-1:cds;Parent=Msa1102930-mRNA-1
chr7_3 three_prime_UTR 37538751 37539256 37538751 ID=Msa1102930-mRNA-1:three_prime_utr;Parent=Msa1102930-mRNA-1
Gene Sequence

>Msa1102930

ATGGAGGAAGTAACCGGTGGCGGCGGTGGCGGAGGTATTCAATGGTTGTGGGGTGTAGCTAGTGCAGCTCAAATGGGATTGGGTGTACGTTCCTACCGTAAGGGTCACGCAGGGGATTCTTGCCTCATGCCTTTGAAAGCTTTCACTGTTGCTTCTCTTTTTATTGGCAGTGCCGCTTCTGCTTCTGTTTTCATTCTTCATGCTAATGGCATTCATGGGGTGGATGATCTCATTGAAGCTGGTGCCAATTTAAGAGCTAAACTTGGGTTACGTCCACGCACATCGAATAAGAATATGGATGAATCATAA
Protein sequence

>Msa1102930

MEEVTGGGGGGGIQWLWGVASAAQMGLGVRSYRKGHAGDSCLMPLKAFTVASLFIGSAASASVFILHANGIHGVDDLIEAGANLRAKLGLRPRTSNKNMDES*