AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1103360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1103360 MtrunA17_Chr7g0226291 99.235 784 6 0 1 784 375 1158 0.0 1616
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1103360 AT3G01780.1 80.822 803 132 4 1 784 377 1176 0.0 1316
Msa1103360 AT3G01780.2 85.345 464 68 0 1 464 377 840 0.0 809

Find 208 sgRNAs with CRISPR-Local

Find 13 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCCTCGTCGTCGGATTT+TGG 0.120852 7_3:+39040184 None:intergenic
ATCTAGTCTCATTCAAAATT+TGG 0.164251 7_3:+39046532 None:intergenic
GTTAATTTGTGATGGCTAAA+TGG 0.170578 7_3:+39044821 None:intergenic
ACAACACCACTGCCATAAAA+TGG 0.192881 7_3:+39041454 None:intergenic
GAATATTGGCCCGACTTATA+TGG 0.215911 7_3:-39045544 Msa1103360:CDS
ACTTGGCATGGTGGCTTCTT+GGG 0.216119 7_3:-39040478 Msa1103360:CDS
GGCTTCCTCGGCAGTTAATT+TGG 0.223856 7_3:+39040090 None:intergenic
ATCTGGTGCATTATATTATA+TGG 0.227704 7_3:-39044050 Msa1103360:CDS
AACTTGGCATGGTGGCTTCT+TGG 0.245933 7_3:-39040479 Msa1103360:CDS
TCACTCTGGCATCTTCAAAA+AGG 0.246327 7_3:+39046898 None:intergenic
TTTGTCGGCCTTGTGTTAAA+TGG 0.260377 7_3:-39046671 Msa1103360:CDS
GCTACTTGAAGTTGCTTGTT+AGG 0.266834 7_3:-39046617 Msa1103360:CDS
GGAGATTGGGTCAGATCTTC+AGG 0.268433 7_3:-39040344 Msa1103360:CDS
ATATGAAGGGAGTGGCTTTC+AGG 0.273356 7_3:-39041215 Msa1103360:CDS
CTTTGAAAGATGTGCCCTTT+GGG 0.288026 7_3:-39041494 Msa1103360:CDS
AAAACTCGACAGGTGATATT+TGG 0.298835 7_3:+39041290 None:intergenic
CTGGTTATGGTGCATTAAAT+TGG 0.301683 7_3:-39046722 Msa1103360:CDS
CTAAAGAACTTGAAGAGTTT+AGG 0.309378 7_3:-39045307 Msa1103360:CDS
GCCGATTTCACTTCATCTTC+AGG 0.310893 7_3:+39040280 None:intergenic
CCTACTGCAAATACTTTAAC+TGG 0.314056 7_3:-39044650 Msa1103360:CDS
AATCACGGGTTCACCTAATT+CGG 0.318225 7_3:+39041363 None:intergenic
GAGGATAACTCTGCATTTAA+AGG 0.339924 7_3:-39044573 Msa1103360:intron
GTCATTGGAGCTTTGGCATA+TGG 0.345189 7_3:-39046747 Msa1103360:CDS
GGAAAGGATAGCCTTGTTAA+AGG 0.349186 7_3:-39040230 Msa1103360:CDS
ACTTTGAAAGATGTGCCCTT+TGG 0.351108 7_3:-39041495 Msa1103360:CDS
GGATAGAAAGTTGGAAGGTT+TGG 0.355407 7_3:-39044768 Msa1103360:CDS
ACTCAGATACCGGAGTTTCT+TGG 0.359106 7_3:+39039850 None:intergenic
AGTAAGTAGAAATGTGGATT+TGG 0.361165 7_3:-39040431 Msa1103360:CDS
AGTTGATGCTACTTCACTTA+AGG 0.361527 7_3:-39044678 Msa1103360:CDS
AGTCAAAGATGGAGCTTCTC+AGG 0.361908 7_3:-39046556 Msa1103360:CDS
TTTGAAATAATGACATTAAG+AGG 0.362114 7_3:+39045458 None:intergenic
AGAAGCTTAAGGCCCGAATT+AGG 0.364047 7_3:-39041376 Msa1103360:CDS
TTCTACAATAGCTGGCAAAC+TGG 0.365437 7_3:+39041255 None:intergenic
TCTTATATCTGCTCAAAGAT+TGG 0.365846 7_3:-39045363 Msa1103360:CDS
CTCAGATACCGGAGTTTCTT+GGG 0.366026 7_3:+39039851 None:intergenic
TTGGCATATGGAACTGGTTA+TGG 0.373929 7_3:-39046735 Msa1103360:CDS
TCTAATTTGTATAAGAAAAG+AGG 0.379571 7_3:+39039890 None:intergenic
TAACCGAGCTCGAACTAAAT+CGG 0.382857 7_3:-39044093 Msa1103360:CDS
CAAAGAATCAAATATGCTTC+AGG 0.384897 7_3:-39045233 Msa1103360:CDS
GGTTAATACACCAAGAATAT+TGG 0.387994 7_3:-39045558 Msa1103360:CDS
GAGCAGGGTCATTGGAGCTT+TGG 0.394409 7_3:-39046754 Msa1103360:CDS
TTAATTTGTGATGGCTAAAT+GGG 0.395583 7_3:+39044822 None:intergenic
GATGTACGTGTTGGATTATC+TGG 0.396049 7_3:-39044067 Msa1103360:CDS
TATGCTGCATATTTGATACT+AGG 0.396455 7_3:-39046593 Msa1103360:CDS
CATATTATCCGCACAGTGGC+AGG 0.396478 7_3:-39041106 Msa1103360:CDS
ATAAGTCGGGCCAATATTCT+TGG 0.397079 7_3:+39045548 None:intergenic
TAATATTCGTACCTACTATC+AGG 0.400442 7_3:+39045206 None:intergenic
CAACTCCTTTAGTCAGCAAA+AGG 0.402044 7_3:+39044696 None:intergenic
ATGACATTAAGAGGATCATC+TGG 0.405842 7_3:+39045467 None:intergenic
CAGCAAAAGGGTTAGTTCAC+TGG 0.406173 7_3:+39044709 None:intergenic
GCATCTATTACTAAGGAGAT+TGG 0.410459 7_3:-39040358 Msa1103360:CDS
TGGAGTCTTGGGTCGTGGTT+GGG 0.414750 7_3:+39040204 None:intergenic
AGTGATCCTTGCTATGTTGA+AGG 0.415041 7_3:-39044623 Msa1103360:CDS
CTTATATCTGCTCAAAGATT+GGG 0.415387 7_3:-39045362 Msa1103360:CDS
TTATGAAGCATCTGCTGCTC+AGG 0.420077 7_3:-39044789 Msa1103360:CDS
TTGGAGTCTTGGGTCGTGGT+TGG 0.422329 7_3:+39040203 None:intergenic
GGCATGGAGAGCAGGGTCAT+TGG 0.422630 7_3:-39046762 Msa1103360:CDS
TGCGATCAGATTCTGCTCTC+AGG 0.425044 7_3:+39047027 None:intergenic
GGAGGAGTTAGTTGCTTCAC+TGG 0.427549 7_3:-39046835 Msa1103360:CDS
GTTAATTTGGATAGTGTTGA+AGG 0.430282 7_3:+39040103 None:intergenic
AAAACTCGGGCATGGAGAGC+AGG 0.431676 7_3:-39046770 Msa1103360:CDS
ATCACGGGTTCACCTAATTC+GGG 0.432187 7_3:+39041364 None:intergenic
GCTACTGCAGCACAGCAGTA+TGG 0.434340 7_3:-39041193 Msa1103360:CDS
AGAGTTTAGGACCAATGCTT+TGG 0.435003 7_3:-39045294 Msa1103360:CDS
TGCTTGATGCTCGGCTTCCT+CGG 0.441111 7_3:+39040078 None:intergenic
TTCCTCATCTTCCTCGTCGT+CGG 0.443800 7_3:+39040177 None:intergenic
GGAGCTTTGGCATATGGAAC+TGG 0.444107 7_3:-39046741 Msa1103360:CDS
TTGTCGGCCTTGTGTTAAAT+GGG 0.446077 7_3:-39046670 Msa1103360:CDS
AATATTGGCCCGACTTATAT+GGG 0.451051 7_3:-39045543 Msa1103360:CDS
GTAAGTAGAAATGTGGATTT+GGG 0.455286 7_3:-39040430 Msa1103360:CDS
CTTGGCATGGTGGCTTCTTG+GGG 0.455488 7_3:-39040477 Msa1103360:CDS
CTCTTCTGTCTCATGACTTG+AGG 0.458622 7_3:+39041397 None:intergenic
CGAGAGGTTTCTGACCTCTT+CGG 0.458989 7_3:+39046940 None:intergenic
CAACACCACTGCCATAAAAT+GGG 0.461271 7_3:+39041455 None:intergenic
GTCTGATGCATCTATTACTA+AGG 0.462486 7_3:-39040365 Msa1103360:CDS
GTAAGTAACTGTCCAGCTCT+AGG 0.463428 7_3:+39045329 None:intergenic
GCACATAGATATAGAAGGAT+TGG 0.465484 7_3:-39045510 Msa1103360:CDS
TAGAAGTGGTGGAAGTTTGT+CGG 0.468417 7_3:-39046686 Msa1103360:CDS
GCGGAGCACATAGATATAGA+AGG 0.471048 7_3:-39045515 Msa1103360:CDS
CTTCAGGTCATCCTGATAGT+AGG 0.473808 7_3:-39045217 Msa1103360:intron
TGATTCTTTGCAATATCAAA+CGG 0.473960 7_3:+39045246 None:intergenic
ATAAAGAGAAAAGGAAGGAC+GGG 0.474690 7_3:-39040150 Msa1103360:CDS
GCCTGAAGATGAAGTGAAAT+CGG 0.475296 7_3:-39040281 Msa1103360:CDS
GTGAACTTGTGAAGAACTTA+CGG 0.478342 7_3:-39046494 Msa1103360:CDS
AGCAAAAGGGTTAGTTCACT+GGG 0.482862 7_3:+39044710 None:intergenic
CATCTATTACTAAGGAGATT+GGG 0.485965 7_3:-39040357 Msa1103360:CDS
ACCGGTACATATACATATGA+AGG 0.486666 7_3:-39041229 Msa1103360:CDS
ACTTCCACCACTTCTAAAGA+AGG 0.487613 7_3:+39046693 None:intergenic
AGGGTTAGTTCACTGGGGTC+AGG 0.488523 7_3:+39044716 None:intergenic
GCTAAATGGGTAATCACCTC+TGG 0.488759 7_3:+39044835 None:intergenic
TCTGCTTGATCTTAATATGC+AGG 0.489036 7_3:-39047684 Msa1103360:intron
CATTTAGCAGATTCAAGTGA+TGG 0.489773 7_3:-39044596 Msa1103360:CDS
TGCTTGAAGTGCTTGATGCT+CGG 0.489804 7_3:+39040069 None:intergenic
ATGCTGCATATTTGATACTA+GGG 0.492565 7_3:-39046592 Msa1103360:CDS
ATTGAACAGTTAATTTGTGA+TGG 0.494125 7_3:+39044813 None:intergenic
AACCGAGCTCGAACTAAATC+GGG 0.497303 7_3:-39044092 Msa1103360:CDS
GATCATCTGGGTCGTCTGCT+AGG 0.498061 7_3:+39045480 None:intergenic
GTTGCGTAATCTTGTTTCAC+AGG 0.499213 7_3:-39044002 Msa1103360:intron
TTGTGTGGATCTATTTGCTA+AGG 0.499652 7_3:-39046970 Msa1103360:CDS
TAATATGTGAACAAACTTTG+TGG 0.502421 7_3:+39041122 None:intergenic
AAATAGAGTTCAAGATGTAC+AGG 0.503922 7_3:-39045390 Msa1103360:CDS
CCGGTGTATTCTACAATAGC+TGG 0.504125 7_3:+39041247 None:intergenic
GATAAAGAGAAAAGGAAGGA+CGG 0.506759 7_3:-39040151 Msa1103360:CDS
CGCAATAGCCCATATAAGTC+GGG 0.507179 7_3:+39045535 None:intergenic
TGCTGCTCAGGATAGAAAGT+TGG 0.512012 7_3:-39044777 Msa1103360:CDS
AGGAAGAGGATAAAGAGAAA+AGG 0.512548 7_3:-39040159 Msa1103360:CDS
ACAAACTTTGTGGAATGGCT+TGG 0.516819 7_3:+39041132 None:intergenic
CCAGTTAAAGTATTTGCAGT+AGG 0.516852 7_3:+39044650 None:intergenic
GGATCACGCCACCCTAGAGC+TGG 0.518975 7_3:-39045341 Msa1103360:CDS
ACTGTTACACTGCACAGCAC+TGG 0.519547 7_3:+39041529 None:intergenic
TGAACTTGTGAAGAACTTAC+GGG 0.521521 7_3:-39046493 Msa1103360:CDS
CTAATTTGTATAAGAAAAGA+GGG 0.522055 7_3:+39039891 None:intergenic
ATCCGACGACGAGGAAGATG+AGG 0.522362 7_3:-39040179 Msa1103360:CDS
TCTACAATAGCTGGCAAACT+GGG 0.523526 7_3:+39041256 None:intergenic
AACTCTATTTGTTGTATCTG+CGG 0.524499 7_3:+39045403 None:intergenic
GTGATGACCTTACTGATGGT+GGG 0.525384 7_3:-39040315 Msa1103360:CDS
CACCCGATTTAGTTCGAGCT+CGG 0.528080 7_3:+39044090 None:intergenic
GACTGAACCTTCTTTAGAAG+TGG 0.529974 7_3:-39046700 Msa1103360:CDS
AACCATGATGTGCAAGTTTG+TGG 0.530660 7_3:-39040395 Msa1103360:CDS
TGTGTTATGCTGCTAAAACT+TGG 0.531973 7_3:-39040495 Msa1103360:CDS
CGAGAGACTTCGAATATCAA+TGG 0.532405 7_3:-39040251 Msa1103360:CDS
AACTCCTTTAGTCAGCAAAA+GGG 0.534817 7_3:+39044697 None:intergenic
CGACGAGGAAGATGAGGAAG+AGG 0.536960 7_3:-39040173 Msa1103360:CDS
AAAAGAATACACTCAGATAC+CGG 0.539089 7_3:+39039840 None:intergenic
AGAGGATAAAGAGAAAAGGA+AGG 0.539664 7_3:-39040155 Msa1103360:CDS
CATTGATATTCGAAGTCTCT+CGG 0.540051 7_3:+39040252 None:intergenic
TGAGACAGAAGAGAAGCTTA+AGG 0.542919 7_3:-39041387 Msa1103360:CDS
GGTGCATTATATTATATGGA+TGG 0.543026 7_3:-39044046 Msa1103360:CDS
TGATGACCTTACTGATGGTG+GGG 0.543164 7_3:-39040314 Msa1103360:CDS
GTTAAAGTATTTGCAGTAGG+AGG 0.545607 7_3:+39044653 None:intergenic
TGAACCTTCTTTAGAAGTGG+TGG 0.546030 7_3:-39046697 Msa1103360:CDS
TACCACAAACTTGCACATCA+TGG 0.547122 7_3:+39040393 None:intergenic
GATTTCAGTCCACTCAAGAA+AGG 0.547452 7_3:+39041163 None:intergenic
TAAGTAACTGTCCAGCTCTA+GGG 0.547522 7_3:+39045330 None:intergenic
TTGGGTCAGATCTTCAGGGT+TGG 0.547572 7_3:-39040339 Msa1103360:CDS
CCCTTCATATGTATATGTAC+CGG 0.552969 7_3:+39041228 None:intergenic
GGTAGAAGTAGCTCAGTCAA+TGG 0.555410 7_3:+39041316 None:intergenic
GAGATTGGGTCAGATCTTCA+GGG 0.556946 7_3:-39040343 Msa1103360:CDS
ATACAACACTTGAACCCAAA+GGG 0.558462 7_3:+39041480 None:intergenic
TACAGAATCAGCCAAAGCAT+TGG 0.560578 7_3:+39045283 None:intergenic
ACTCCACCCCACCATCAGTA+AGG 0.561833 7_3:+39040308 None:intergenic
AGAGGTCAGAAACCTCTCGC+TGG 0.564639 7_3:-39046936 Msa1103360:CDS
TGGTTGGGCTGCCTTTAACA+AGG 0.566030 7_3:+39040219 None:intergenic
GTGGAATGGCTTGGAAGACA+AGG 0.572334 7_3:+39041141 None:intergenic
ATTTAGCAGATTCAAGTGAT+GGG 0.576560 7_3:-39044595 Msa1103360:CDS
GGTTGACATCTCAAAATCAC+GGG 0.579470 7_3:+39041349 None:intergenic
TGTGATGACCTTACTGATGG+TGG 0.580545 7_3:-39040316 Msa1103360:CDS
TTTGCAATATCAAACGGCAC+TGG 0.583661 7_3:+39045252 None:intergenic
GGTGCGTCACCTTTCTTGAG+TGG 0.584149 7_3:-39041172 Msa1103360:CDS
CATTATTTCAAATATTCGCA+AGG 0.589606 7_3:-39045447 Msa1103360:CDS
GGCATATGCTCTGCAAGGAT+AGG 0.590247 7_3:-39040030 Msa1103360:CDS
AATCGGGTGGATGTACGTGT+TGG 0.590768 7_3:-39044076 Msa1103360:CDS
AAACTCGGGCATGGAGAGCA+GGG 0.591196 7_3:-39046769 Msa1103360:CDS
TTGTAGAACAGCTCTTTGTG+TGG 0.591335 7_3:-39046985 Msa1103360:CDS
AAATAGTTAGTTAACTTCAG+TGG 0.591740 7_3:+39040006 None:intergenic
CCGCAATAGCCCATATAAGT+CGG 0.592567 7_3:+39045534 None:intergenic
TGATAACCTTCAACATAGCA+AGG 0.593849 7_3:+39044617 None:intergenic
AAAGGGCACATCTTTCAAAG+TGG 0.594211 7_3:+39041497 None:intergenic
ACATATACATATGAAGGGAG+TGG 0.595377 7_3:-39041223 Msa1103360:CDS
TGTAGGTTTCACTCTTCAAG+AGG 0.595902 7_3:-39047070 Msa1103360:intron
CAAGTAGCAGTCAATTGCAT+AGG 0.597362 7_3:+39046632 None:intergenic
GGAGTTAGTTGCTTCACTGG+TGG 0.597813 7_3:-39046832 Msa1103360:CDS
TGTGAACAAACTTTGTGGAA+TGG 0.598234 7_3:+39041127 None:intergenic
AAGGGCACATCTTTCAAAGT+GGG 0.599992 7_3:+39041498 None:intergenic
AGGTTGACATCTCAAAATCA+CGG 0.602289 7_3:+39041348 None:intergenic
CCGACTTATATGGGCTATTG+CGG 0.603364 7_3:-39045534 Msa1103360:CDS
CTGGCAAACTGGGCCACAGT+CGG 0.603514 7_3:+39041266 None:intergenic
TGAAGGTGACTATGCTGAGG+AGG 0.607190 7_3:-39041422 Msa1103360:CDS
TCTGGGTCGTCTGCTAGGAG+TGG 0.607555 7_3:+39045485 None:intergenic
TAAAGAGAAAAGGAAGGACG+GGG 0.609459 7_3:-39040149 Msa1103360:CDS
CCGGTACATATACATATGAA+GGG 0.609607 7_3:-39041228 Msa1103360:CDS
TGGTGTGATGACCTTACTGA+TGG 0.613990 7_3:-39040319 Msa1103360:CDS
AAGTGAAGTAAGTAGAAATG+TGG 0.614298 7_3:-39040437 Msa1103360:CDS
TGTGTTAAATGGGATTGTGA+TGG 0.616729 7_3:-39046660 Msa1103360:CDS
GACTTCGAATATCAATGGAA+AGG 0.623530 7_3:-39040246 Msa1103360:CDS
AGACTTCGCCCAAGAAACTC+CGG 0.626913 7_3:-39039859 Msa1103360:three_prime_UTR
AGCAGTCAATTGCATAGGTG+CGG 0.627920 7_3:+39046637 None:intergenic
TGCTGCATATTTGATACTAG+GGG 0.628062 7_3:-39046591 Msa1103360:CDS
ATATTATCCGCACAGTGGCA+GGG 0.628489 7_3:-39041105 Msa1103360:CDS
GTTAAGATCATCACTCACTC+TGG 0.629408 7_3:+39046884 None:intergenic
GCAATATCAGTTCCAGCGAG+AGG 0.633112 7_3:+39046924 None:intergenic
TGACCTTACTGATGGTGGGG+TGG 0.636195 7_3:-39040311 Msa1103360:CDS
ACTATCCAAATTAACTGCCG+AGG 0.637960 7_3:-39040095 Msa1103360:CDS
TGACATTAAGAGGATCATCT+GGG 0.639148 7_3:+39045468 None:intergenic
GCTCAGGATAGAAAGTTGGA+AGG 0.639628 7_3:-39044773 Msa1103360:CDS
GACTCCAAAATCCGACGACG+AGG 0.641025 7_3:-39040188 Msa1103360:CDS
GCTGCTAAAACTTGGCATGG+TGG 0.642339 7_3:-39040487 Msa1103360:CDS
TATGCTGCTAAAACTTGGCA+TGG 0.642883 7_3:-39040490 Msa1103360:CDS
GTGCTGTGCAGTGTAACAGT+TGG 0.645590 7_3:-39041526 Msa1103360:CDS
GGTGTTGTTGGAGACTATGA+AGG 0.645680 7_3:-39041439 Msa1103360:CDS
TAGCAGATTCAAGTGATGGG+AGG 0.646543 7_3:-39044592 Msa1103360:CDS
GTAACTGTCCAGCTCTAGGG+TGG 0.647951 7_3:+39045333 None:intergenic
AAGCAGCAGTACTACAAGAG+TGG 0.648117 7_3:-39040051 Msa1103360:CDS
AATACAACACTTGAACCCAA+AGG 0.650354 7_3:+39041479 None:intergenic
CTATGAAGGTGACTATGCTG+AGG 0.650850 7_3:-39041425 Msa1103360:CDS
CCAGCTATTGTAGAATACAC+CGG 0.655504 7_3:-39041247 Msa1103360:CDS
AGAGTGGCATATGCTCTGCA+AGG 0.657481 7_3:-39040035 Msa1103360:CDS
TGCATATTTGATACTAGGGG+CGG 0.660256 7_3:-39046588 Msa1103360:CDS
GGTGTAAAGAGAGTCAAAGA+TGG 0.662188 7_3:-39046567 Msa1103360:CDS
TCACAATCCCATTTAACACA+AGG 0.667274 7_3:+39046663 None:intergenic
CCTGAAACCCTGCCACTGTG+CGG 0.667866 7_3:+39041098 None:intergenic
TCGACAGGTGATATTTGGTG+TGG 0.679523 7_3:+39041295 None:intergenic
GCTGGTGTTACAGCAGCCAG+AGG 0.683064 7_3:-39044851 Msa1103360:CDS
GCTAAGGAAAGTGTCCGAAG+AGG 0.695446 7_3:-39046954 Msa1103360:CDS
TTCACATATTATCCGCACAG+TGG 0.732061 7_3:-39041110 Msa1103360:CDS
ATGGTTCTTCTCAAGCAGTG+CGG 0.747276 7_3:-39044027 Msa1103360:CDS
ACTTGTGAAGAACTTACGGG+AGG 0.765515 7_3:-39046490 Msa1103360:intron
GCAAAAGGGTTAGTTCACTG+GGG 0.793022 7_3:+39044711 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAATTTGTATAAGAAAAGA+GGG + chr7_3:39047531-39047550 None:intergenic 20.0%
!!! TCTAATTTGTATAAGAAAAG+AGG + chr7_3:39047532-39047551 None:intergenic 20.0%
! ATTTGTTTCAATGTTACGAT+TGG - chr7_3:39039798-39039817 Msa1103360:three_prime_UTR 25.0%
! TTTCCTGAAAAATTTGGAAA+GGG + chr7_3:39047613-39047632 None:intergenic 25.0%
AAAAGAATACACTCAGATAC+CGG + chr7_3:39047582-39047601 None:intergenic 30.0%
! ATTCCCTTTCCAAATTTTTC+AGG - chr7_3:39047607-39047626 Msa1103360:intron 30.0%
CTTTCCTGAAAAATTTGGAA+AGG + chr7_3:39047614-39047633 None:intergenic 30.0%
TCTGCTTGATCTTAATATGC+AGG - chr7_3:39039735-39039754 Msa1103360:three_prime_UTR 35.0%
AAGCGCTTTCCTGAAAAATT+TGG + chr7_3:39047619-39047638 None:intergenic 35.0%
!!! TCTTTTGGGGCTTTGAGTGA+CGG - chr7_3:39047485-39047504 Msa1103360:intron 45.0%
CTCAGATACCGGAGTTTCTT+GGG + chr7_3:39047571-39047590 None:intergenic 45.0%
ACTCAGATACCGGAGTTTCT+TGG + chr7_3:39047572-39047591 None:intergenic 45.0%
AGACTTCGCCCAAGAAACTC+CGG - chr7_3:39047560-39047579 Msa1103360:intron 50.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 39039728 39047713 39039728 ID=Msa1103360;Name=Msa1103360
chr7_3 mRNA 39039728 39047713 39039728 ID=Msa1103360-mRNA-1;Parent=Msa1103360;Name=Msa1103360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=23|1|1|1|0.83|0.71|7|284|784
chr7_3 exon 39039728 39040518 39039728 ID=Msa1103360-mRNA-1:exon:7944;Parent=Msa1103360-mRNA-1
chr7_3 exon 39041099 39041554 39041099 ID=Msa1103360-mRNA-1:exon:7943;Parent=Msa1103360-mRNA-1
chr7_3 exon 39044003 39044125 39044003 ID=Msa1103360-mRNA-1:exon:7942;Parent=Msa1103360-mRNA-1
chr7_3 exon 39044574 39044877 39044574 ID=Msa1103360-mRNA-1:exon:7941;Parent=Msa1103360-mRNA-1
chr7_3 exon 39045218 39045579 39045218 ID=Msa1103360-mRNA-1:exon:7940;Parent=Msa1103360-mRNA-1
chr7_3 exon 39046491 39047087 39046491 ID=Msa1103360-mRNA-1:exon:7939;Parent=Msa1103360-mRNA-1
chr7_3 exon 39047685 39047713 39047685 ID=Msa1103360-mRNA-1:exon:7938;Parent=Msa1103360-mRNA-1
chr7_3 five_prime_UTR 39047691 39047713 39047691 ID=Msa1103360-mRNA-1:five_prime_utr;Parent=Msa1103360-mRNA-1
chr7_3 CDS 39047685 39047690 39047685 ID=Msa1103360-mRNA-1:cds;Parent=Msa1103360-mRNA-1
chr7_3 CDS 39046491 39047087 39046491 ID=Msa1103360-mRNA-1:cds;Parent=Msa1103360-mRNA-1
chr7_3 CDS 39045218 39045579 39045218 ID=Msa1103360-mRNA-1:cds;Parent=Msa1103360-mRNA-1
chr7_3 CDS 39044574 39044877 39044574 ID=Msa1103360-mRNA-1:cds;Parent=Msa1103360-mRNA-1
chr7_3 CDS 39044003 39044125 39044003 ID=Msa1103360-mRNA-1:cds;Parent=Msa1103360-mRNA-1
chr7_3 CDS 39041099 39041554 39041099 ID=Msa1103360-mRNA-1:cds;Parent=Msa1103360-mRNA-1
chr7_3 CDS 39040012 39040518 39040012 ID=Msa1103360-mRNA-1:cds;Parent=Msa1103360-mRNA-1
chr7_3 three_prime_UTR 39039728 39040011 39039728 ID=Msa1103360-mRNA-1:three_prime_utr;Parent=Msa1103360-mRNA-1
Gene Sequence

>Msa1103360

ATGCAGGTTTCACTCTTCAAGAGGCTACTTTTGATGGTAAGAAACCTGAGAGCAGAATCTGATCGCATGCATGCTTTAGCTTGTATTTGTAGAACAGCTCTTTGTGTGGATCTATTTGCTAAGGAAAGTGTCCGAAGAGGTCAGAAACCTCTCGCTGGAACTGATATTGCTTCCCTTTTTGAAGATGCCAGAGTGAGTGATGATCTTAACAGCATTACAAGTAAAAGCATTTTTAGGGAGGAGTTAGTTGCTTCACTGGTGGAAAGTTGCTTTCAGCTGTCTTTGCCTTTGCCTGAACAGAAAAACTCGGGCATGGAGAGCAGGGTCATTGGAGCTTTGGCATATGGAACTGGTTATGGTGCATTAAATTGGACTGAACCTTCTTTAGAAGTGGTGGAAGTTTGTCGGCCTTGTGTTAAATGGGATTGTGATGGCCGCACCTATGCAATTGACTGCTACTTGAAGTTGCTTGTTAGGTTATGCTGCATATTTGATACTAGGGGCGGTGTAAAGAGAGTCAAAGATGGAGCTTCTCAGGACCAAATTTTGAATGAGACTAGATTGCAAAACTTGCAACGTGAACTTGTGAAGAACTTACGGGAGGTTAATACACCAAGAATATTGGCCCGACTTATATGGGCTATTGCGGAGCACATAGATATAGAAGGATTGGATCCACTCCTAGCAGACGACCCAGATGATCCTCTTAATGTCATTATTTCAAATATTCGCAAGGTTCTTTTCAATGTTGACTCAACCGCAGATACAACAAATAGAGTTCAAGATGTACAGGCAGTTCTTATATCTGCTCAAAGATTGGGATCACGCCACCCTAGAGCTGGACAGTTACTTACTAAAGAACTTGAAGAGTTTAGGACCAATGCTTTGGCTGATTCTGTAAGCAAGCACCAGTGCCGTTTGATATTGCAAAGAATCAAATATGCTTCAGGTCATCCTGATAGTAGGTGGGCTGGTGTTACAGCAGCCAGAGGTGATTACCCATTTAGCCATCACAAATTAACTGTTCAATTTTATGAAGCATCTGCTGCTCAGGATAGAAAGTTGGAAGGTTTGGTTCACAAAGCTATTTTAGAGCTATGGAGACCTGACCCCAGTGAACTAACCCTTTTGCTGACTAAAGGAGTTGATGCTACTTCACTTAAGGTTCCTCCTACTGCAAATACTTTAACTGGAAGCAGTGATCCTTGCTATGTTGAAGGTTATCATTTAGCAGATTCAAGTGATGGGAGGATAACTCTGCATTTAAAGGTCTTAAATTTAACCGAGCTCGAACTAAATCGGGTGGATGTACGTGTTGGATTATCTGGTGCATTATATTATATGGATGGTTCTTCTCAAGCAGTGCGGCAGTTGCGTAATCTTGTTTCACAGGATCCAGTGCTGTGCAGTGTAACAGTTGGTGTTTCCCACTTTGAAAGATGTGCCCTTTGGGTTCAAGTGTTGTATTACCCATTTTATGGCAGTGGTGTTGTTGGAGACTATGAAGGTGACTATGCTGAGGAGGATCCTCAAGTCATGAGACAGAAGAGAAGCTTAAGGCCCGAATTAGGTGAACCCGTGATTTTGAGATGTCAACCTTATAAAATTCCATTGACTGAGCTACTTCTACCACACCAAATATCACCTGTCGAGTTTTTCCGACTGTGGCCCAGTTTGCCAGCTATTGTAGAATACACCGGTACATATACATATGAAGGGAGTGGCTTTCAGGCTACTGCAGCACAGCAGTATGGTGCGTCACCTTTCTTGAGTGGACTGAAATCCTTGTCTTCCAAGCCATTCCACAAAGTTTGTTCACATATTATCCGCACAGTGGCAGGGTTTCAGTTGTGTTATGCTGCTAAAACTTGGCATGGTGGCTTCTTGGGGTTGATGATTTTTGGTGCAAGTGAAGTAAGTAGAAATGTGGATTTGGGTGACGAGACGACAACCATGATGTGCAAGTTTGTGGTACGAGCGTCTGATGCATCTATTACTAAGGAGATTGGGTCAGATCTTCAGGGTTGGTGTGATGACCTTACTGATGGTGGGGTGGAGTATATGCCTGAAGATGAAGTGAAATCGGCTGCTGCCGAGAGACTTCGAATATCAATGGAAAGGATAGCCTTGTTAAAGGCAGCCCAACCACGACCCAAGACTCCAAAATCCGACGACGAGGAAGATGAGGAAGAGGATAAAGAGAAAAGGAAGGACGGGGATGAAGATGAGAAAAAGAAGGGACCTTCAACACTATCCAAATTAACTGCCGAGGAAGCCGAGCATCAAGCACTTCAAGCAGCAGTACTACAAGAGTGGCATATGCTCTGCAAGGATAGGACCACTGAAGTTAACTAA
Protein sequence

>Msa1103360

MQVSLFKRLLLMVRNLRAESDRMHALACICRTALCVDLFAKESVRRGQKPLAGTDIASLFEDARVSDDLNSITSKSIFREELVASLVESCFQLSLPLPEQKNSGMESRVIGALAYGTGYGALNWTEPSLEVVEVCRPCVKWDCDGRTYAIDCYLKLLVRLCCIFDTRGGVKRVKDGASQDQILNETRLQNLQRELVKNLREVNTPRILARLIWAIAEHIDIEGLDPLLADDPDDPLNVIISNIRKVLFNVDSTADTTNRVQDVQAVLISAQRLGSRHPRAGQLLTKELEEFRTNALADSVSKHQCRLILQRIKYASGHPDSRWAGVTAARGDYPFSHHKLTVQFYEASAAQDRKLEGLVHKAILELWRPDPSELTLLLTKGVDATSLKVPPTANTLTGSSDPCYVEGYHLADSSDGRITLHLKVLNLTELELNRVDVRVGLSGALYYMDGSSQAVRQLRNLVSQDPVLCSVTVGVSHFERCALWVQVLYYPFYGSGVVGDYEGDYAEEDPQVMRQKRSLRPELGEPVILRCQPYKIPLTELLLPHQISPVEFFRLWPSLPAIVEYTGTYTYEGSGFQATAAQQYGASPFLSGLKSLSSKPFHKVCSHIIRTVAGFQLCYAAKTWHGGFLGLMIFGASEVSRNVDLGDETTTMMCKFVVRASDASITKEIGSDLQGWCDDLTDGGVEYMPEDEVKSAAAERLRISMERIALLKAAQPRPKTPKSDDEEDEEEDKEKRKDGDEDEKKKGPSTLSKLTAEEAEHQALQAAVLQEWHMLCKDRTTEVN*