AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1105150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105150 MtrunA17_Chr7g0237221 91.463 410 14 3 1 389 1 410 0.0 760
Msa1105150 MtrunA17_Chr4g0010101 55.526 371 123 8 2 346 4 358 1.43e-133 387
Msa1105150 MtrunA17_Chr7g0237261 92.784 97 7 0 1 97 1 97 9.13e-56 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105150 AT3G24800.1 45.205 365 166 8 1 335 5 365 2.05e-98 299

Find 85 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGTCATATGTGCTGTTTC+TGG 0.132135 7_3:-43326728 Msa1105150:CDS
GAAGGCAGAGATAGAGAATT+TGG 0.233360 7_3:+43327931 None:intergenic
CGGTAACAACGGTGAAAATA+TGG 0.244050 7_3:-43322966 Msa1105150:CDS
CTATCTCTGCCTTCAGAAAA+TGG 0.260590 7_3:-43327922 Msa1105150:exon
TCTTTCAACATCCAGTCTTT+AGG 0.278763 7_3:-43321726 Msa1105150:CDS
GTTCTCTGTGCATATTCTTC+AGG 0.323222 7_3:+43324603 None:intergenic
TAATTTCAGGTTCTCCTTCA+TGG 0.328542 7_3:+43324994 None:intergenic
TTCCTCCTCTACGATAAATC+TGG 0.336084 7_3:-43325072 Msa1105150:CDS
TGTGAATCACAAGCTAAATT+TGG 0.337553 7_3:-43325113 Msa1105150:CDS
ATTAAATCGACCGGGAAGTT+TGG 0.339988 7_3:+43321845 None:intergenic
ATACAAGAGGAAGATGTCTT+AGG 0.351778 7_3:+43324546 None:intergenic
ACTCGAGTACCAGTAATTTC+AGG 0.355130 7_3:+43324981 None:intergenic
ACGCAACAACAAAAGGAATC+TGG 0.356154 7_3:+43327849 None:intergenic
AATCTAAGTGTCCAACTTGT+AGG 0.375096 7_3:-43326674 Msa1105150:CDS
AGACATACCAAGGGTTTGAT+TGG 0.383910 7_3:+43326566 None:intergenic
GTCCTTCTATTGTAAGCAAC+AGG 0.387178 7_3:+43326588 None:intergenic
ATCCTGTTGCTTACAATAGA+AGG 0.392555 7_3:-43326590 Msa1105150:CDS
CCAAAGTGAGCTTTCGAGTC+AGG 0.400318 7_3:+43322929 None:intergenic
CAGACTTTCGGAAATCCTCT+TGG 0.402123 7_3:+43324660 None:intergenic
TTAGAGGAAGAGAAGAAATC+AGG 0.403372 7_3:-43325167 Msa1105150:intron
AGGATTTCCGAAAGTCTGTT+TGG 0.403934 7_3:-43324655 Msa1105150:CDS
GAAGGAGAACCTGAAATTAC+TGG 0.405207 7_3:-43324990 Msa1105150:intron
GAAGCACTTGGGTTGTTTGA+TGG 0.422048 7_3:-43321684 Msa1105150:CDS
GACAGTCGCTCCAAACTTCC+CGG 0.423547 7_3:-43321855 Msa1105150:CDS
ATTCTATGTTTCCTAAAGAC+TGG 0.428866 7_3:+43321715 None:intergenic
GGCTGATCACTGGACAGTTA+AGG 0.432087 7_3:-43321755 Msa1105150:CDS
GAAGCATTTGGCAGACTGTT+GGG 0.433058 7_3:+43326634 None:intergenic
TTCAGAAGTTCCGACATTGC+TGG 0.439795 7_3:+43325040 None:intergenic
TTCTTAGGTTTATTAGATAA+CGG 0.442432 7_3:-43322986 Msa1105150:intron
GCTGATCACTGGACAGTTAA+GGG 0.453416 7_3:-43321754 Msa1105150:CDS
GAATTTACAGCTGAAGCACT+TGG 0.454031 7_3:-43321696 Msa1105150:CDS
TGTCGGAACTTCTGAATGTA+TGG 0.457216 7_3:-43325033 Msa1105150:CDS
TCAAACTCCAAACAGACTTT+CGG 0.459929 7_3:+43324648 None:intergenic
CTTCATGTTCATCGTGATCA+AGG 0.464343 7_3:+43327880 None:intergenic
CAGACAAACGCAACAACAAA+AGG 0.468211 7_3:+43327842 None:intergenic
AGTTCCGACATTGCTGGAGT+TGG 0.473470 7_3:+43325046 None:intergenic
AACAGATGCTATTGAACTAA+AGG 0.473532 7_3:-43324583 Msa1105150:CDS
TTCGGAAATCCTCTTGGATG+TGG 0.478072 7_3:+43324666 None:intergenic
GTTGTCTTACATAGTACAAT+GGG 0.481481 7_3:+43326827 None:intergenic
TCGAAAGCTCACTTTGGAGT+TGG 0.481647 7_3:-43322923 Msa1105150:CDS
TTGTAGCATCAGGTTCATCT+TGG 0.481698 7_3:+43321649 None:intergenic
CGCAACAACAAAAGGAATCT+GGG 0.481878 7_3:+43327850 None:intergenic
AATTTCAGGTTCTCCTTCAT+GGG 0.482482 7_3:+43324995 None:intergenic
TGAAGCATTTGGCAGACTGT+TGG 0.487089 7_3:+43326633 None:intergenic
GTAGTTCTTCATTGCGGTCA+TGG 0.487400 7_3:-43324861 Msa1105150:intron
CCTGACTCGAAAGCTCACTT+TGG 0.493932 7_3:-43322929 Msa1105150:CDS
ATTATGTTACGACGAGGGTC+AGG 0.504681 7_3:+43321783 None:intergenic
TTTATCGTAGAGGAGGAAGA+AGG 0.510014 7_3:+43325077 None:intergenic
CAGAGATAGAGAATTTGGAA+TGG 0.518418 7_3:+43327936 None:intergenic
ATGTTGTTGATTAAATCGAC+CGG 0.525287 7_3:+43321836 None:intergenic
CACATTGTACACATCACGTC+AGG 0.527410 7_3:+43324906 None:intergenic
ATAATGTTGAGGCTGATCAC+TGG 0.541980 7_3:-43321765 Msa1105150:CDS
ATGTGTCGAGATCAAATTGA+GGG 0.551782 7_3:+43325135 None:intergenic
AGAAGGACCAATCAAACCCT+TGG 0.556347 7_3:-43326573 Msa1105150:intron
CAACCTGGGTCTTCCCATGA+AGG 0.559563 7_3:-43325008 Msa1105150:CDS
TGACCGCAATGAAGAACTAC+AGG 0.562056 7_3:+43324864 None:intergenic
CTTCATGGGAAGACCCAGGT+TGG 0.564739 7_3:+43325009 None:intergenic
CGTTGTCTTACATAGTACAA+TGG 0.567668 7_3:+43326826 None:intergenic
TTATCGTAGAGGAGGAAGAA+GGG 0.571648 7_3:+43325078 None:intergenic
GATTCCAACTCCAGCAATGT+CGG 0.586368 7_3:-43325050 Msa1105150:CDS
AATTTACAGCTGAAGCACTT+GGG 0.587037 7_3:-43321695 Msa1105150:CDS
CTGAATGTATGGACCAACCT+GGG 0.596406 7_3:-43325022 Msa1105150:CDS
GCACTTGGGTTGTTTGATGG+TGG 0.598437 7_3:-43321681 Msa1105150:CDS
AAGACTGGATGTTGAAAGAA+CGG 0.601005 7_3:+43321730 None:intergenic
TCTGAATGTATGGACCAACC+TGG 0.603579 7_3:-43325023 Msa1105150:CDS
ATCCAGATTTATCGTAGAGG+AGG 0.605715 7_3:+43325070 None:intergenic
TAGTATTGATGCCTACAAGT+TGG 0.620663 7_3:+43326663 None:intergenic
ACAACGGTGAAAATATGGAA+TGG 0.622237 7_3:-43322961 Msa1105150:CDS
TGTTGTTGATTAAATCGACC+GGG 0.622865 7_3:+43321837 None:intergenic
CATCCTGTAGTTCTTCATTG+CGG 0.631699 7_3:-43324867 Msa1105150:CDS
TCTCCTTCATGGGAAGACCC+AGG 0.634624 7_3:+43325005 None:intergenic
GATGTGGAATTTGACAAACT+TGG 0.636520 7_3:+43324682 None:intergenic
CATGTGTCGAGATCAAATTG+AGG 0.638580 7_3:+43325134 None:intergenic
TGTCAAATTCCACATCCAAG+AGG 0.641776 7_3:-43324675 Msa1105150:CDS
GTGTACATAAATCAATGAGT+GGG 0.647814 7_3:-43326704 Msa1105150:CDS
AAGCTTGAAACTGTGATCTG+AGG 0.649140 7_3:+43321812 None:intergenic
CTCAACATTATGTTACGACG+AGG 0.657315 7_3:+43321777 None:intergenic
GGAATCCAGATTTATCGTAG+AGG 0.677717 7_3:+43325067 None:intergenic
TTATTAGATAACGGTAACAA+CGG 0.687872 7_3:-43322977 Msa1105150:CDS
TGTTGTGTAAGATTATCCTG+AGG 0.689095 7_3:+43324942 None:intergenic
TGTGTACATAAATCAATGAG+TGG 0.690277 7_3:-43326705 Msa1105150:CDS
TGTGTCGAGATCAAATTGAG+GGG 0.711213 7_3:+43325136 None:intergenic
TCAACATTATGTTACGACGA+GGG 0.714087 7_3:+43321778 None:intergenic
CTCGTCGTAACATAATGTTG+AGG 0.716659 7_3:-43321776 Msa1105150:CDS
TGTACATAAATCAATGAGTG+GGG 0.737997 7_3:-43326703 Msa1105150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr7_3:43323481-43323500 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr7_3:43323481-43323500 Msa1105150:intron 0.0%
!! TATATATATATATATATATA+GGG - chr7_3:43323480-43323499 Msa1105150:intron 0.0%
!! ATATATATATATATATATAT+GGG + chr7_3:43323481-43323500 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr7_3:43323480-43323499 None:intergenic 0.0%
!! TTTAATAAAAATAAAAATAA+AGG + chr7_3:43326283-43326302 None:intergenic 0.0%
!! TTTGAATAGTAAATAATAAT+TGG + chr7_3:43321918-43321937 None:intergenic 10.0%
!! ATTATTATTTACTATTCAAA+AGG - chr7_3:43321918-43321937 Msa1105150:intron 10.0%
!! TTATTATTTACTATTCAAAA+GGG - chr7_3:43321919-43321938 Msa1105150:intron 10.0%
!!! TCATCATTTTAAAAAAATAA+AGG + chr7_3:43321957-43321976 None:intergenic 10.0%
!!! ATTTTTATTCTAAAGTTAAA+AGG - chr7_3:43322646-43322665 Msa1105150:intron 10.0%
!! TTAAAATGAAATAGTATTAT+AGG + chr7_3:43325402-43325421 None:intergenic 10.0%
!!! GTTATTTTGAATAATTTTTA+TGG + chr7_3:43325425-43325444 None:intergenic 10.0%
!!! AATTTTTTCTCTTTTTATCA+AGG - chr7_3:43321879-43321898 Msa1105150:CDS 15.0%
!! ATGAATTATTATAACTCTAA+TGG + chr7_3:43322183-43322202 None:intergenic 15.0%
!! AAAAAAAAAAAAACAGTATC+CGG + chr7_3:43322515-43322534 None:intergenic 15.0%
!! TATAATTTAATAAAGAAACG+AGG + chr7_3:43322730-43322749 None:intergenic 15.0%
!! AAATTAATAGTAACTATCTT+TGG + chr7_3:43323145-43323164 None:intergenic 15.0%
!!! GTTTTATTTCTAATGTTTTA+TGG - chr7_3:43324240-43324259 Msa1105150:intron 15.0%
!! AATAAATACAATTTACTAGA+AGG + chr7_3:43324372-43324391 None:intergenic 15.0%
!! TAATAAAATATACATACAAG+AGG + chr7_3:43325096-43325115 None:intergenic 15.0%
!!! TGCTTTTAGATTTTTTTATA+TGG - chr7_3:43325189-43325208 Msa1105150:intron 15.0%
!! ATAACAATAAGTAATAGATA+TGG + chr7_3:43325623-43325642 None:intergenic 15.0%
!!! AAATCATTTTTAGTGATTTA+TGG - chr7_3:43325746-43325765 Msa1105150:intron 15.0%
!!! AATCATTTTTAGTGATTTAT+GGG - chr7_3:43325747-43325766 Msa1105150:intron 15.0%
!!! TAATTATTTTCTTCTTTCTT+AGG - chr7_3:43326625-43326644 Msa1105150:CDS 15.0%
!! TTAACAATATGTAGAATTAA+AGG + chr7_3:43326880-43326899 None:intergenic 15.0%
!!! ATTCTACATATTGTTAATTT+TGG - chr7_3:43326883-43326902 Msa1105150:intron 15.0%
!!! TATTAGTTTATAGATGTTAA+CGG - chr7_3:43327463-43327482 Msa1105150:intron 15.0%
!! AAGAGAAAAAATTGAACATA+GGG + chr7_3:43321872-43321891 None:intergenic 20.0%
!! AAAGAGAAAAAATTGAACAT+AGG + chr7_3:43321873-43321892 None:intergenic 20.0%
!!! TTAGCTTTAGTTAATTTGAT+TGG - chr7_3:43321995-43322014 Msa1105150:intron 20.0%
!!! ATGGACTAATACATAAAAAT+TGG + chr7_3:43322448-43322467 None:intergenic 20.0%
!!! TAGAATAACTTGTATTAATG+AGG - chr7_3:43323201-43323220 Msa1105150:intron 20.0%
!!! GATTTTTTTATATGGTTTGT+TGG - chr7_3:43325197-43325216 Msa1105150:intron 20.0%
!!! ATCATTTTTAGTGATTTATG+GGG - chr7_3:43325748-43325767 Msa1105150:intron 20.0%
!! ACTAAACCATAGATTTAAAT+TGG + chr7_3:43325896-43325915 None:intergenic 20.0%
!!! CCATTTTAATGGTAATTATT+GGG + chr7_3:43326013-43326032 None:intergenic 20.0%
!!! ACCATTTTAATGGTAATTAT+TGG + chr7_3:43326014-43326033 None:intergenic 20.0%
!! AACTTATAATCCAGAATTTA+AGG + chr7_3:43326147-43326166 None:intergenic 20.0%
!!! TATACTAATTTTCTATCTCT+TGG - chr7_3:43326588-43326607 Msa1105150:CDS 20.0%
!! TTCTTAGGTTTATTAGATAA+CGG - chr7_3:43326640-43326659 Msa1105150:CDS 20.0%
!! TAAAAGCCATATTATGTATA+TGG - chr7_3:43326920-43326939 Msa1105150:intron 20.0%
!!! AAATTTCCTTTCTTCTTTTA+AGG - chr7_3:43326977-43326996 Msa1105150:intron 20.0%
!!! AATTTCCTTTCTTCTTTTAA+GGG - chr7_3:43326978-43326997 Msa1105150:intron 20.0%
!! TGAGAAAACTGAAAATAATA+AGG + chr7_3:43327016-43327035 None:intergenic 20.0%
!! AGCAACAAAGAAAAATAAAT+AGG + chr7_3:43327112-43327131 None:intergenic 20.0%
!! ATTATATCCTAAGTAAAGAA+TGG + chr7_3:43327277-43327296 None:intergenic 20.0%
!!! TTTATTTTTCTGAGTATCTT+TGG - chr7_3:43327596-43327615 Msa1105150:intron 20.0%
!! TTATATCTATTTCCAATGAT+AGG + chr7_3:43327699-43327718 None:intergenic 20.0%
! ATGTAACTAGAATTTAGAAG+AGG - chr7_3:43322130-43322149 Msa1105150:intron 25.0%
!!! ACTCGTTTGATATTTGTTTT+TGG - chr7_3:43322252-43322271 Msa1105150:intron 25.0%
!! TTGGTAATTCATAGTTAGTA+TGG - chr7_3:43322308-43322327 Msa1105150:intron 25.0%
! TGGTAATTCATAGTTAGTAT+GGG - chr7_3:43322309-43322328 Msa1105150:intron 25.0%
! GCATAAGTTCATTTGAATAT+AGG - chr7_3:43323099-43323118 Msa1105150:intron 25.0%
!! AGCTTTTATAAACATTACAC+AGG + chr7_3:43324085-43324104 None:intergenic 25.0%
! CTTATAATGTCTTGGAATTT+GGG + chr7_3:43324159-43324178 None:intergenic 25.0%
! TCTTATAATGTCTTGGAATT+TGG + chr7_3:43324160-43324179 None:intergenic 25.0%
! CAGTTAATCTTATAATGTCT+TGG + chr7_3:43324167-43324186 None:intergenic 25.0%
! AAAAAATCTAAAAGCAAAGC+TGG + chr7_3:43325185-43325204 None:intergenic 25.0%
! GAAAAGACATTAAGTGATTT+AGG - chr7_3:43325360-43325379 Msa1105150:intron 25.0%
! ATTGTTCTAATAAAGACACT+TGG - chr7_3:43325467-43325486 Msa1105150:intron 25.0%
! TTGTTCTAATAAAGACACTT+GGG - chr7_3:43325468-43325487 Msa1105150:intron 25.0%
!! CTTTTGGATAAAATTGTTGT+GGG + chr7_3:43325496-43325515 None:intergenic 25.0%
!! CACAACAATTTTATCCAAAA+GGG - chr7_3:43325495-43325514 Msa1105150:intron 25.0%
!! ACAACAATTTTATCCAAAAG+GGG - chr7_3:43325496-43325515 Msa1105150:intron 25.0%
! CCTAAATAAATAGGAAAATC+AGG + chr7_3:43325655-43325674 None:intergenic 25.0%
!! CCTGATTTTCCTATTTATTT+AGG - chr7_3:43325652-43325671 Msa1105150:intron 25.0%
! AGACTCAATCCTAAATAAAT+AGG + chr7_3:43325664-43325683 None:intergenic 25.0%
!! ATACAATCATTTTCCTATGT+TGG - chr7_3:43325684-43325703 Msa1105150:intron 25.0%
!! TACAATCATTTTCCTATGTT+GGG - chr7_3:43325685-43325704 Msa1105150:intron 25.0%
! AACTCTTAGAATTTGGATTA+AGG + chr7_3:43325711-43325730 None:intergenic 25.0%
! AGTTGTAAACTCTTAGAATT+TGG + chr7_3:43325718-43325737 None:intergenic 25.0%
! AACCATAGATTTAAATTGGA+TGG + chr7_3:43325892-43325911 None:intergenic 25.0%
! TTGTCTAAAAACAATCTAGA+GGG - chr7_3:43325929-43325948 Msa1105150:intron 25.0%
!! AAATATTGACTGTAATCGAA+AGG + chr7_3:43325957-43325976 None:intergenic 25.0%
! CCCAATAATTACCATTAAAA+TGG - chr7_3:43326010-43326029 Msa1105150:intron 25.0%
!! TTTCTACTGAACCATTTTAA+TGG + chr7_3:43326024-43326043 None:intergenic 25.0%
! ATTAAAATGGTTCAGTAGAA+AGG - chr7_3:43326023-43326042 Msa1105150:intron 25.0%
! AAATCTGTGTCAAAATTATC+CGG - chr7_3:43326300-43326319 Msa1105150:intron 25.0%
! AAATTGTCTCCTTATTGAAT+CGG + chr7_3:43326427-43326446 None:intergenic 25.0%
!! ACAATCTTCAGTGTATTTTA+GGG + chr7_3:43326493-43326512 None:intergenic 25.0%
!! TACAATCTTCAGTGTATTTT+AGG + chr7_3:43326494-43326513 None:intergenic 25.0%
! AAAACAGAGAATGTATACTA+GGG + chr7_3:43326540-43326559 None:intergenic 25.0%
! AAAAACAGAGAATGTATACT+AGG + chr7_3:43326541-43326560 None:intergenic 25.0%
!! TTATTAGATAACGGTAACAA+CGG - chr7_3:43326649-43326668 Msa1105150:CDS 25.0%
! TTGGAACCATATACATAATA+TGG + chr7_3:43326929-43326948 None:intergenic 25.0%
!! GATCATATCGATTATCTTAT+TGG + chr7_3:43326948-43326967 None:intergenic 25.0%
!!! ATAGTTTTGTAAAGAAGACA+TGG - chr7_3:43327037-43327056 Msa1105150:intron 25.0%
!!! TAGTTTTGTAAAGAAGACAT+GGG - chr7_3:43327038-43327057 Msa1105150:intron 25.0%
! TTTATATAACTAAGTTGCAG+TGG - chr7_3:43327135-43327154 Msa1105150:intron 25.0%
! AGTAAAGAATGGAATTAGTT+TGG + chr7_3:43327266-43327285 None:intergenic 25.0%
! ACTAATTCCATTCTTTACTT+AGG - chr7_3:43327267-43327286 Msa1105150:intron 25.0%
!!! AAAATAGGTTTTGATCTTTG+TGG - chr7_3:43327738-43327757 Msa1105150:intron 25.0%
! AAAGGCATAGAATTGAAAGA+TGG + chr7_3:43321823-43321842 None:intergenic 30.0%
TCATAAAAGGGGGAAAAAAA+AGG + chr7_3:43321841-43321860 None:intergenic 30.0%
! AGGGTGTGTTTTTCATAAAA+GGG + chr7_3:43321853-43321872 None:intergenic 30.0%
! TAGGGTGTGTTTTTCATAAA+AGG + chr7_3:43321854-43321873 None:intergenic 30.0%
TTGCATTATCTTCAGTGAAT+TGG + chr7_3:43322110-43322129 None:intergenic 30.0%
TAATTCATAGTTAGTATGGG+AGG - chr7_3:43322312-43322331 Msa1105150:intron 30.0%
TAAAGTTAAAAGGATGATGC+TGG - chr7_3:43322656-43322675 Msa1105150:intron 30.0%
!!! TTGGTCAATGTGTCATTTTA+AGG - chr7_3:43322690-43322709 Msa1105150:intron 30.0%
GTTGTCTTACATAGTACAAT+GGG + chr7_3:43322802-43322821 None:intergenic 30.0%
TGTGTACATAAATCAATGAG+TGG - chr7_3:43322921-43322940 Msa1105150:CDS 30.0%
GTGTACATAAATCAATGAGT+GGG - chr7_3:43322922-43322941 Msa1105150:CDS 30.0%
TGTACATAAATCAATGAGTG+GGG - chr7_3:43322923-43322942 Msa1105150:CDS 30.0%
! GAAGCAAAAAATGAAGCATT+TGG + chr7_3:43323007-43323026 None:intergenic 30.0%
TAGAGAAATAGACATACCAA+GGG + chr7_3:43323072-43323091 None:intergenic 30.0%
TTAGAGAAATAGACATACCA+AGG + chr7_3:43323073-43323092 None:intergenic 30.0%
ATACTACGATAACATCATAC+CGG - chr7_3:43323260-43323279 Msa1105150:intron 30.0%
ACATCATACCGGTATATATA+TGG - chr7_3:43323271-43323290 Msa1105150:intron 30.0%
CATCATACCGGTATATATAT+GGG - chr7_3:43323272-43323291 Msa1105150:intron 30.0%
AGCAAAACCCATATATATAC+CGG + chr7_3:43323282-43323301 None:intergenic 30.0%
ACACCTTCATAAAAGTAAGT+TGG - chr7_3:43323385-43323404 Msa1105150:intron 30.0%
!! ACACCAACTTACTTTTATGA+AGG + chr7_3:43323620-43323639 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG + chr7_3:43323571-43323590 None:intergenic 30.0%
!! ACACCAACTTACTTTTATGA+AGG - chr7_3:43323620-43323639 Msa1105150:intron 30.0%
ACACCTTCATAAAAGTAAGT+TGG + chr7_3:43323385-43323404 None:intergenic 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr7_3:43323668-43323687 Msa1105150:intron 30.0%
! TTTTATCAAGTCACACCTTA+AGG + chr7_3:43323686-43323705 None:intergenic 30.0%
! CATTTTGCTTACACATATGA+AGG + chr7_3:43323846-43323865 None:intergenic 30.0%
ATTCTATTATGCTTTAGTCC+AGG + chr7_3:43324195-43324214 None:intergenic 30.0%
TGGACTAAAGCATAATAGAA+TGG - chr7_3:43324194-43324213 Msa1105150:intron 30.0%
CCAATAATCAGAATAAGACA+CGG + chr7_3:43324294-43324313 None:intergenic 30.0%
!!! TCATTGATCTCTTGTTTTAG+AGG - chr7_3:43324443-43324462 Msa1105150:intron 30.0%
TGTGAATCACAAGCTAAATT+TGG - chr7_3:43324513-43324532 Msa1105150:intron 30.0%
AATATACTTGAGAAAACGTC+AGG + chr7_3:43324881-43324900 None:intergenic 30.0%
!! TTTGGAGTTTGATCACTTTT+TGG - chr7_3:43324989-43325008 Msa1105150:intron 30.0%
AACAGATGCTATTGAACTAA+AGG - chr7_3:43325043-43325062 Msa1105150:CDS 30.0%
GCATTTGCACTTAAGATAAA+TGG - chr7_3:43325253-43325272 Msa1105150:intron 30.0%
! CCTTTTGGATAAAATTGTTG+TGG + chr7_3:43325497-43325516 None:intergenic 30.0%
! CCACAACAATTTTATCCAAA+AGG - chr7_3:43325494-43325513 Msa1105150:intron 30.0%
! CAACAATTTTATCCAAAAGG+GGG - chr7_3:43325497-43325516 Msa1105150:intron 30.0%
AAAATTCTCTTAGCGTATCT+TGG - chr7_3:43325589-43325608 Msa1105150:intron 30.0%
ACCACATCAAGAATGAATAA+AGG + chr7_3:43325779-43325798 None:intergenic 30.0%
! GGTATCAGATTTTGTATAAG+AGG + chr7_3:43325859-43325878 None:intergenic 30.0%
! AAATTGGATGGCAATTTTCA+AGG + chr7_3:43325880-43325899 None:intergenic 30.0%
TGCCATCCAATTTAAATCTA+TGG - chr7_3:43325887-43325906 Msa1105150:intron 30.0%
CTTGTCTAAAAACAATCTAG+AGG - chr7_3:43325928-43325947 Msa1105150:intron 30.0%
!! AATTTGAGAAGTGTTACAAC+TGG - chr7_3:43326099-43326118 Msa1105150:intron 30.0%
TTGTTTAGAGAATCCAGATA+AGG + chr7_3:43326244-43326263 None:intergenic 30.0%
TTATCTGGATTCTCTAAACA+AGG - chr7_3:43326243-43326262 Msa1105150:intron 30.0%
! TGTCAAAATTATCCGGTTTT+AGG - chr7_3:43326307-43326326 Msa1105150:intron 30.0%
ATCCTAATTCCGATTCAATA+AGG - chr7_3:43326415-43326434 Msa1105150:intron 30.0%
TAAGGAGACAATTTATGACA+TGG - chr7_3:43326433-43326452 Msa1105150:intron 30.0%
CACTTCAAACATATGATCTA+CGG - chr7_3:43326460-43326479 Msa1105150:intron 30.0%
TCATAAGCATGCATTTAACA+AGG + chr7_3:43326843-43326862 None:intergenic 30.0%
! GAATGGAATTAGTTTGGAAT+CGG + chr7_3:43327209-43327228 None:intergenic 30.0%
AGTGAAGAATGGAATTAGTT+TGG + chr7_3:43327215-43327234 None:intergenic 30.0%
TTTATATCCTGAGTGAAGAA+TGG + chr7_3:43327226-43327245 None:intergenic 30.0%
! GAATGGAATTAGTTTGGAAT+CGG + chr7_3:43327209-43327228 None:intergenic 30.0%
!! TTTTGGAAGACTGATATTTG+AGG + chr7_3:43327370-43327389 None:intergenic 30.0%
AGTTTCACATAACCAATCTA+GGG + chr7_3:43327416-43327435 None:intergenic 30.0%
ATATAAATGCAATGACTGCA+AGG - chr7_3:43327713-43327732 Msa1105150:intron 30.0%
AATGACTGCAAGGAAAAAAT+AGG - chr7_3:43327723-43327742 Msa1105150:intron 30.0%
! ATGTTGTTGATTAAATCGAC+CGG + chr7_3:43327793-43327812 None:intergenic 30.0%
ATTCTATGTTTCCTAAAGAC+TGG + chr7_3:43327914-43327933 None:intergenic 30.0%
CAGAGATAGAGAATTTGGAA+TGG + chr7_3:43321693-43321712 None:intergenic 35.0%
! TTGTGTTCTCCATTTTCTGA+AGG + chr7_3:43321716-43321735 None:intergenic 35.0%
! GGTGTGTTTTTCATAAAAGG+GGG + chr7_3:43321851-43321870 None:intergenic 35.0%
! GGGTGTGTTTTTCATAAAAG+GGG + chr7_3:43321852-43321871 None:intergenic 35.0%
!! TCTGAAGTTGATATGCATGT+AGG - chr7_3:43322045-43322064 Msa1105150:intron 35.0%
!! CTGAAGTTGATATGCATGTA+GGG - chr7_3:43322046-43322065 Msa1105150:intron 35.0%
GAAGAGGAAAAACTCATCAT+TGG - chr7_3:43322146-43322165 Msa1105150:intron 35.0%
AGGAAAAACTCATCATTGGT+TGG - chr7_3:43322150-43322169 Msa1105150:intron 35.0%
AACGAGTCACATTACATTCT+GGG + chr7_3:43322239-43322258 None:intergenic 35.0%
AAACGAGTCACATTACATTC+TGG + chr7_3:43322240-43322259 None:intergenic 35.0%
ATGGGAGGTAAATAATGTCT+AGG - chr7_3:43322327-43322346 Msa1105150:intron 35.0%
ACATAAAAATTGGCACCTGA+AGG + chr7_3:43322438-43322457 None:intergenic 35.0%
GTATTAGTCCATATAGAGCT+TGG - chr7_3:43322456-43322475 Msa1105150:intron 35.0%
AAAAAACAGTATCCGGTCAA+AGG + chr7_3:43322508-43322527 None:intergenic 35.0%
!! CTCACGAATGATTTGTCTTT+TGG - chr7_3:43322579-43322598 Msa1105150:intron 35.0%
!! TTGTCTTTTGGTAATCTTGC+TGG - chr7_3:43322591-43322610 Msa1105150:intron 35.0%
!!! TAAAAGGATGATGCTGGTTT+TGG - chr7_3:43322662-43322681 Msa1105150:intron 35.0%
TAACACTACTTTCATCATGC+AGG - chr7_3:43322761-43322780 Msa1105150:intron 35.0%
AACACTACTTTCATCATGCA+GGG - chr7_3:43322762-43322781 Msa1105150:intron 35.0%
CGTTGTCTTACATAGTACAA+TGG + chr7_3:43322803-43322822 None:intergenic 35.0%
AATCTAAGTGTCCAACTTGT+AGG - chr7_3:43322952-43322971 Msa1105150:CDS 35.0%
!! TAGTATTGATGCCTACAAGT+TGG + chr7_3:43322966-43322985 None:intergenic 35.0%
! ATCCTGTTGCTTACAATAGA+AGG - chr7_3:43323036-43323055 Msa1105150:intron 35.0%
AAAGTGAAAATCACACCTTG+AGG + chr7_3:43323343-43323362 None:intergenic 35.0%
CTAAAAGACACCTTCACAAA+AGG - chr7_3:43323440-43323459 Msa1105150:intron 35.0%
! ATAGAAGACACCTTTTGTGA+AGG - chr7_3:43323558-43323577 Msa1105150:intron 35.0%
TTGATAAAAGACACCACCAA+AGG - chr7_3:43323697-43323716 Msa1105150:intron 35.0%
TGATAAAAGACACCACCAAA+GGG - chr7_3:43323698-43323717 Msa1105150:intron 35.0%
GATCATTCAAGTGCATAACT+AGG - chr7_3:43323869-43323888 Msa1105150:intron 35.0%
TTCCATATTGCCTAGAGATA+TGG - chr7_3:43323921-43323940 Msa1105150:intron 35.0%
TCAAACACCTTCATTCTGTT+CGG - chr7_3:43324017-43324036 Msa1105150:intron 35.0%
! AATGTCTTGGAATTTGGGTT+GGG + chr7_3:43324154-43324173 None:intergenic 35.0%
TAATGTCTTGGAATTTGGGT+TGG + chr7_3:43324155-43324174 None:intergenic 35.0%
! GATAATTTTCTGCAGCTTTG+TGG - chr7_3:43324216-43324235 Msa1105150:intron 35.0%
! CCGTGTCTTATTCTGATTAT+TGG - chr7_3:43324291-43324310 Msa1105150:intron 35.0%
TAGAAGGTGATGTTGAGAAA+GGG + chr7_3:43324356-43324375 None:intergenic 35.0%
TTAGAGGAAGAGAAGAAATC+AGG - chr7_3:43324459-43324478 Msa1105150:intron 35.0%
ATGTGTCGAGATCAAATTGA+GGG + chr7_3:43324494-43324513 None:intergenic 35.0%
!! AATTTCAGGTTCTCCTTCAT+GGG + chr7_3:43324634-43324653 None:intergenic 35.0%
!! TAATTTCAGGTTCTCCTTCA+TGG + chr7_3:43324635-43324654 None:intergenic 35.0%
TGTTGTGTAAGATTATCCTG+AGG + chr7_3:43324687-43324706 None:intergenic 35.0%
GATGTGGAATTTGACAAACT+TGG + chr7_3:43324947-43324966 None:intergenic 35.0%
TCAAACTCCAAACAGACTTT+CGG + chr7_3:43324981-43325000 None:intergenic 35.0%
ATACAAGAGGAAGATGTCTT+AGG + chr7_3:43325083-43325102 None:intergenic 35.0%
TTCAGTTACAACTATCTCGT+AGG + chr7_3:43325343-43325362 None:intergenic 35.0%
TTAAGTGATTTAGGTGTGAG+TGG - chr7_3:43325369-43325388 Msa1105150:intron 35.0%
! AGAGAATTTTCTCCATAGCT+GGG + chr7_3:43325579-43325598 None:intergenic 35.0%
! AAGAGAATTTTCTCCATAGC+TGG + chr7_3:43325580-43325599 None:intergenic 35.0%
! TTTTAGTGATTTATGGGGAC+TGG - chr7_3:43325753-43325772 Msa1105150:intron 35.0%
GCCTTTATTCATTCTTGATG+TGG - chr7_3:43325775-43325794 Msa1105150:intron 35.0%
!! ATCACTATTTCTAACCTGTG+TGG - chr7_3:43325800-43325819 Msa1105150:intron 35.0%
ATGCTCATTCCAAATGCATT+TGG - chr7_3:43325827-43325846 Msa1105150:intron 35.0%
AGGAATGATCCAAATGCATT+TGG + chr7_3:43325839-43325858 None:intergenic 35.0%
!!! GTCAATATTTTAGCAAGCTC+TGG - chr7_3:43325967-43325986 Msa1105150:intron 35.0%
ACTTCTCAAATTCTCAGCAT+CGG + chr7_3:43326091-43326110 None:intergenic 35.0%
TAAGGAACAGCTTCGAATAA+CGG + chr7_3:43326129-43326148 None:intergenic 35.0%
! CGAGTGTTATCATTTTCTTG+AGG - chr7_3:43326185-43326204 Msa1105150:intron 35.0%
TCCTCATCTTTACCTAAAAC+CGG + chr7_3:43326322-43326341 None:intergenic 35.0%
CTCCTTATTGAATCGGAATT+AGG + chr7_3:43326420-43326439 None:intergenic 35.0%
CGTAGATCATATGTTTGAAG+TGG + chr7_3:43326462-43326481 None:intergenic 35.0%
ACAACGGTGAAAATATGGAA+TGG - chr7_3:43326665-43326684 Msa1105150:CDS 35.0%
CTCTCATATACTGCTATAGT+AGG - chr7_3:43326756-43326775 Msa1105150:intron 35.0%
ATGCTCCCTTAAAAGAAGAA+AGG + chr7_3:43326986-43327005 None:intergenic 35.0%
! TAGTTTGGAATCGGTCTTTA+TGG + chr7_3:43327200-43327219 None:intergenic 35.0%
ACTAATTCCATTCTTCACTC+AGG - chr7_3:43327216-43327235 Msa1105150:intron 35.0%
! TAGTTTGGAATCGGTCTTTA+TGG + chr7_3:43327200-43327219 None:intergenic 35.0%
! ATGTCAGCTGAGTAGTTTTT+AGG + chr7_3:43327309-43327328 None:intergenic 35.0%
TCTTCCAAAACATTAACCAC+TGG - chr7_3:43327380-43327399 Msa1105150:intron 35.0%
CAGTTTCACATAACCAATCT+AGG + chr7_3:43327417-43327436 None:intergenic 35.0%
! AAATGCAGTGTGATAATGTG+TGG - chr7_3:43327654-43327673 Msa1105150:intron 35.0%
GTACAGGTATTACCTATCAT+TGG - chr7_3:43327684-43327703 Msa1105150:intron 35.0%
! TGTTGTTGATTAAATCGACC+GGG + chr7_3:43327792-43327811 None:intergenic 35.0%
TCAACATTATGTTACGACGA+GGG + chr7_3:43327851-43327870 None:intergenic 35.0%
AAGACTGGATGTTGAAAGAA+CGG + chr7_3:43327899-43327918 None:intergenic 35.0%
TCTTTCAACATCCAGTCTTT+AGG - chr7_3:43327900-43327919 Msa1105150:CDS 35.0%
! AATTTACAGCTGAAGCACTT+GGG - chr7_3:43327931-43327950 Msa1105150:five_prime_UTR 35.0%
GAAGGCAGAGATAGAGAATT+TGG + chr7_3:43321698-43321717 None:intergenic 40.0%
CTATCTCTGCCTTCAGAAAA+TGG - chr7_3:43321704-43321723 Msa1105150:CDS 40.0%
CTTCATGTTCATCGTGATCA+AGG + chr7_3:43321749-43321768 None:intergenic 40.0%
CGCAACAACAAAAGGAATCT+GGG + chr7_3:43321779-43321798 None:intergenic 40.0%
ACGCAACAACAAAAGGAATC+TGG + chr7_3:43321780-43321799 None:intergenic 40.0%
CAGACAAACGCAACAACAAA+AGG + chr7_3:43321787-43321806 None:intergenic 40.0%
ACGAGTCACATTACATTCTG+GGG + chr7_3:43322238-43322257 None:intergenic 40.0%
AAATTGGCACCTGAAGGATT+CGG + chr7_3:43322432-43322451 None:intergenic 40.0%
TTAGTCCATATAGAGCTTGG+TGG - chr7_3:43322459-43322478 Msa1105150:intron 40.0%
TAGTCCATATAGAGCTTGGT+GGG - chr7_3:43322460-43322479 Msa1105150:intron 40.0%
TGATCAAGAATTGTTCACCC+AGG - chr7_3:43322541-43322560 Msa1105150:intron 40.0%
TTCACCCAGGAATCGAATTT+GGG - chr7_3:43322554-43322573 Msa1105150:intron 40.0%
! GGTAATCTTGCTGGTTGATA+TGG - chr7_3:43322600-43322619 Msa1105150:intron 40.0%
TGAACGTGTTAGTAGTGTGA+TGG - chr7_3:43322842-43322861 Msa1105150:intron 40.0%
ATGACCACAAGCTGCAAAAA+TGG + chr7_3:43322886-43322905 None:intergenic 40.0%
GTCCTTCTATTGTAAGCAAC+AGG + chr7_3:43323041-43323060 None:intergenic 40.0%
AGACATACCAAGGGTTTGAT+TGG + chr7_3:43323063-43323082 None:intergenic 40.0%
TGCTAAAAGACACCACCAAA+GGG + chr7_3:43323313-43323332 None:intergenic 40.0%
TTGCTAAAAGACACCACCAA+AGG + chr7_3:43323314-43323333 None:intergenic 40.0%
! TTTTAGCAAGTCACACCTCA+AGG - chr7_3:43323325-43323344 Msa1105150:intron 40.0%
! CTACAAGACACCTTTTGTGA+AGG + chr7_3:43323453-43323472 None:intergenic 40.0%
! TTTTGTTACAAGCCACCCTT+TGG + chr7_3:43323716-43323735 None:intergenic 40.0%
CTTAGAGTCTCTTTCCAGTT+AGG + chr7_3:43323818-43323837 None:intergenic 40.0%
CTAACTGGAAAGAGACTCTA+AGG - chr7_3:43323816-43323835 Msa1105150:intron 40.0%
AGGCCTTCATATGTGTGAAA+TGG - chr7_3:43323889-43323908 Msa1105150:intron 40.0%
CCACCATTTCACACATATGA+AGG + chr7_3:43323895-43323914 None:intergenic 40.0%
CCTTCATATGTGTGAAATGG+TGG - chr7_3:43323892-43323911 Msa1105150:intron 40.0%
TCAACAAAGGCCATATCTCT+AGG + chr7_3:43323934-43323953 None:intergenic 40.0%
! GAAGGCGGAATTTTCAACAA+AGG + chr7_3:43323947-43323966 None:intergenic 40.0%
TGAAAATTCCGCCTTCATTG+TGG - chr7_3:43323951-43323970 Msa1105150:intron 40.0%
!! GAACAGAATGAAGGTGTTTG+AGG + chr7_3:43324018-43324037 None:intergenic 40.0%
!! TTCATTCTGTTCGGTGTGAA+GGG - chr7_3:43324026-43324045 Msa1105150:intron 40.0%
ATTACACAGGCCATATCTCT+AGG + chr7_3:43324072-43324091 None:intergenic 40.0%
CTAACTCAACCTTGCAAAAC+CGG + chr7_3:43324130-43324149 None:intergenic 40.0%
ATAAGATTAACTGCGTCTCC+TGG - chr7_3:43324174-43324193 Msa1105150:intron 40.0%
TGTTTCATGCATACTGCTTG+AGG - chr7_3:43324314-43324333 Msa1105150:intron 40.0%
GTTTCATGCATACTGCTTGA+GGG - chr7_3:43324315-43324334 Msa1105150:intron 40.0%
CTAGAAGGTGATGTTGAGAA+AGG + chr7_3:43324357-43324376 None:intergenic 40.0%
TGTGTCGAGATCAAATTGAG+GGG + chr7_3:43324493-43324512 None:intergenic 40.0%
CATGTGTCGAGATCAAATTG+AGG + chr7_3:43324495-43324514 None:intergenic 40.0%
TTATCGTAGAGGAGGAAGAA+GGG + chr7_3:43324551-43324570 None:intergenic 40.0%
TTTATCGTAGAGGAGGAAGA+AGG + chr7_3:43324552-43324571 None:intergenic 40.0%
TTCCTCCTCTACGATAAATC+TGG - chr7_3:43324554-43324573 Msa1105150:CDS 40.0%
ATCCAGATTTATCGTAGAGG+AGG + chr7_3:43324559-43324578 None:intergenic 40.0%
GGAATCCAGATTTATCGTAG+AGG + chr7_3:43324562-43324581 None:intergenic 40.0%
TGTCGGAACTTCTGAATGTA+TGG - chr7_3:43324593-43324612 Msa1105150:CDS 40.0%
GAAGGAGAACCTGAAATTAC+TGG - chr7_3:43324636-43324655 Msa1105150:CDS 40.0%
ACTCGAGTACCAGTAATTTC+AGG + chr7_3:43324648-43324667 None:intergenic 40.0%
!! TGAAGAAAAAGCATTGCCTC+AGG - chr7_3:43324668-43324687 Msa1105150:CDS 40.0%
CATCCTGTAGTTCTTCATTG+CGG - chr7_3:43324759-43324778 Msa1105150:intron 40.0%
TGTCAAATTCCACATCCAAG+AGG - chr7_3:43324951-43324970 Msa1105150:CDS 40.0%
AGGATTTCCGAAAGTCTGTT+TGG - chr7_3:43324971-43324990 Msa1105150:intron 40.0%
!!! GGAGTTTGATCACTTTTTGG+AGG - chr7_3:43324992-43325011 Msa1105150:CDS 40.0%
GTTCTCTGTGCATATTCTTC+AGG + chr7_3:43325026-43325045 None:intergenic 40.0%
CTTAAGTGCAAATGCTAGCA+AGG + chr7_3:43325248-43325267 None:intergenic 40.0%
ATCCTTGTGGAACAGTTTCA+GGG + chr7_3:43325313-43325332 None:intergenic 40.0%
AATCCTTGTGGAACAGTTTC+AGG + chr7_3:43325314-43325333 None:intergenic 40.0%
! ATAACACTATCTCCCCCTTT+TGG + chr7_3:43325512-43325531 None:intergenic 40.0%
TTTGGATTAAGGCCCAACAT+AGG + chr7_3:43325700-43325719 None:intergenic 40.0%
!! CTATTTCTAACCTGTGTGGA+TGG - chr7_3:43325804-43325823 Msa1105150:intron 40.0%
AAGGAACAGCTTCGAATAAC+GGG + chr7_3:43326128-43326147 None:intergenic 40.0%
CGAAGCTGTTCCTTAAATTC+TGG - chr7_3:43326134-43326153 Msa1105150:intron 40.0%
AGAATCCAGATAAGGAGACT+AGG + chr7_3:43326236-43326255 None:intergenic 40.0%
!!! TCCGGTTTTAGGTAAAGATG+AGG - chr7_3:43326318-43326337 Msa1105150:intron 40.0%
CGGTAACAACGGTGAAAATA+TGG - chr7_3:43326660-43326679 Msa1105150:CDS 40.0%
!! GAGTTGGTTGTGACTTTTGT+GGG - chr7_3:43326719-43326738 Msa1105150:CDS 40.0%
! AGTTGGTTGTGACTTTTGTG+GGG - chr7_3:43326720-43326739 Msa1105150:CDS 40.0%
TACCTGTCTAGTATGAAGCA+GGG + chr7_3:43326795-43326814 None:intergenic 40.0%
AGCATGCATTTAACAAGGAC+AGG + chr7_3:43326838-43326857 None:intergenic 40.0%
!! TCTACTATGACTCGGTTGAA+AGG - chr7_3:43327159-43327178 Msa1105150:intron 40.0%
! TGTGCCAGTGGTTAATGTTT+TGG + chr7_3:43327387-43327406 None:intergenic 40.0%
! AATGTGTGGCTTGTATGTAC+AGG - chr7_3:43327668-43327687 Msa1105150:intron 40.0%
ATTAAATCGACCGGGAAGTT+TGG + chr7_3:43327784-43327803 None:intergenic 40.0%
AAGCTTGAAACTGTGATCTG+AGG + chr7_3:43327817-43327836 None:intergenic 40.0%
CTCAACATTATGTTACGACG+AGG + chr7_3:43327852-43327871 None:intergenic 40.0%
CTCGTCGTAACATAATGTTG+AGG - chr7_3:43327850-43327869 Msa1105150:CDS 40.0%
ATAATGTTGAGGCTGATCAC+TGG - chr7_3:43327861-43327880 Msa1105150:CDS 40.0%
! GAATTTACAGCTGAAGCACT+TGG - chr7_3:43327930-43327949 Msa1105150:five_prime_UTR 40.0%
TTGTAGCATCAGGTTCATCT+TGG + chr7_3:43327980-43327999 None:intergenic 40.0%
TCTAGGCTAGAAACCCACAT+GGG - chr7_3:43322344-43322363 Msa1105150:intron 45.0%
CAATCCCACCAAGCTCTATA+TGG + chr7_3:43322467-43322486 None:intergenic 45.0%
! CATATAGAGCTTGGTGGGAT+TGG - chr7_3:43322465-43322484 Msa1105150:intron 45.0%
GGTCAAAGGACCAACTAATC+CGG + chr7_3:43322494-43322513 None:intergenic 45.0%
!! GGATTAGTTGGTCCTTTGAC+CGG - chr7_3:43322493-43322512 Msa1105150:intron 45.0%
GTTCACCCAGGAATCGAATT+TGG - chr7_3:43322553-43322572 Msa1105150:intron 45.0%
AGAGCCCAAATTCGATTCCT+GGG + chr7_3:43322561-43322580 None:intergenic 45.0%
!!! GATGCTGGTTTTGGACATGT+TGG - chr7_3:43322671-43322690 Msa1105150:intron 45.0%
!! TCCTCCATTTTTGCAGCTTG+TGG - chr7_3:43322879-43322898 Msa1105150:intron 45.0%
ACCACAAGCTGCAAAAATGG+AGG + chr7_3:43322883-43322902 None:intergenic 45.0%
!! GTGGTCATATGTGCTGTTTC+TGG - chr7_3:43322898-43322917 Msa1105150:intron 45.0%
! GAAGCATTTGGCAGACTGTT+GGG + chr7_3:43322995-43323014 None:intergenic 45.0%
! TGAAGCATTTGGCAGACTGT+TGG + chr7_3:43322996-43323015 None:intergenic 45.0%
AGAAGGACCAATCAAACCCT+TGG - chr7_3:43323053-43323072 Msa1105150:intron 45.0%
! TTTTGCTACAAGCCACCCTT+TGG - chr7_3:43323295-43323314 Msa1105150:intron 45.0%
TAAAAGACACCACCAAAGGG+TGG + chr7_3:43323701-43323720 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr7_3:43323701-43323720 Msa1105150:intron 45.0%
CAAGCAAGAGATGTCCTAAC+TGG - chr7_3:43323801-43323820 Msa1105150:intron 45.0%
GGCCATATCTCTAGGCAATA+TGG + chr7_3:43323926-43323945 None:intergenic 45.0%
AACCCAGATGTCGCAATTAG+GGG + chr7_3:43323982-43324001 None:intergenic 45.0%
CAACCCAGATGTCGCAATTA+GGG + chr7_3:43323983-43324002 None:intergenic 45.0%
CTTCACACCGAACAGAATGA+AGG + chr7_3:43324027-43324046 None:intergenic 45.0%
!! CTTCATTCTGTTCGGTGTGA+AGG - chr7_3:43324025-43324044 Msa1105150:intron 45.0%
!! TCATTCTGTTCGGTGTGAAG+GGG - chr7_3:43324027-43324046 Msa1105150:intron 45.0%
TCCCACATTGCCTAGAGATA+TGG - chr7_3:43324059-43324078 Msa1105150:intron 45.0%
GCCATATCTCTAGGCAATGT+GGG + chr7_3:43324063-43324082 None:intergenic 45.0%
!! AAAACCGGCTTGTAAGGTGA+AGG + chr7_3:43324115-43324134 None:intergenic 45.0%
! CGGTTTTGCAAGGTTGAGTT+AGG - chr7_3:43324128-43324147 Msa1105150:intron 45.0%
AAGGTGATGTTGAGAAAGGG+AGG + chr7_3:43324353-43324372 None:intergenic 45.0%
GATTCCAACTCCAGCAATGT+CGG - chr7_3:43324576-43324595 Msa1105150:CDS 45.0%
TTCAGAAGTTCCGACATTGC+TGG + chr7_3:43324589-43324608 None:intergenic 45.0%
TCTGAATGTATGGACCAACC+TGG - chr7_3:43324603-43324622 Msa1105150:CDS 45.0%
CTGAATGTATGGACCAACCT+GGG - chr7_3:43324604-43324623 Msa1105150:CDS 45.0%
CACATTGTACACATCACGTC+AGG + chr7_3:43324723-43324742 None:intergenic 45.0%
TGACCGCAATGAAGAACTAC+AGG + chr7_3:43324765-43324784 None:intergenic 45.0%
GTAGTTCTTCATTGCGGTCA+TGG - chr7_3:43324765-43324784 Msa1105150:intron 45.0%
TTCGGAAATCCTCTTGGATG+TGG + chr7_3:43324963-43324982 None:intergenic 45.0%
CAGACTTTCGGAAATCCTCT+TGG + chr7_3:43324969-43324988 None:intergenic 45.0%
TCAGGGCAATATCGTTCTGT+AGG + chr7_3:43325296-43325315 None:intergenic 45.0%
! CGTAGGAGTTCTAATCCTTG+TGG + chr7_3:43325326-43325345 None:intergenic 45.0%
!! AGCATCGGCTATAAGAGAGT+AGG + chr7_3:43326076-43326095 None:intergenic 45.0%
CAGATAAGGAGACTAGGACA+CGG + chr7_3:43326230-43326249 None:intergenic 45.0%
!! TCGAAAGCTCACTTTGGAGT+TGG - chr7_3:43326703-43326722 Msa1105150:CDS 45.0%
!! GGAGTTGGTTGTGACTTTTG+TGG - chr7_3:43326718-43326737 Msa1105150:CDS 45.0%
ACCTGTCTAGTATGAAGCAG+GGG + chr7_3:43326794-43326813 None:intergenic 45.0%
CTACCTGTCTAGTATGAAGC+AGG + chr7_3:43326796-43326815 None:intergenic 45.0%
! CAGGTAGTCATCGTTTTACG+CGG - chr7_3:43326809-43326828 Msa1105150:intron 45.0%
ATTATGTTACGACGAGGGTC+AGG + chr7_3:43327846-43327865 None:intergenic 45.0%
GCTGATCACTGGACAGTTAA+GGG - chr7_3:43327872-43327891 Msa1105150:CDS 45.0%
! GAAGCACTTGGGTTGTTTGA+TGG - chr7_3:43327942-43327961 Msa1105150:five_prime_UTR 45.0%
!!! AAATTATTTTATCTATTTAT+TGG - chr7_3:43324399-43324418 Msa1105150:intron 5.0%
!!! AATTATTTTATCTATTTATT+GGG - chr7_3:43324400-43324419 Msa1105150:intron 5.0%
!! TAAATATAAAAAGAATTTAA+AGG + chr7_3:43327580-43327599 None:intergenic 5.0%
TTCCTAGGGGAAAGAGGCTT+TGG - chr7_3:43322289-43322308 Msa1105150:intron 50.0%
TACCAAAGCCTCTTTCCCCT+AGG + chr7_3:43322294-43322313 None:intergenic 50.0%
GTCTAGGCTAGAAACCCACA+TGG - chr7_3:43322343-43322362 Msa1105150:intron 50.0%
! CTTGAGAGGAGCACACTCTA+AGG + chr7_3:43322395-43322414 None:intergenic 50.0%
CTTAGAGTGTGCTCCTCTCA+AGG - chr7_3:43322393-43322412 Msa1105150:intron 50.0%
ACTTGAGCTGAGACCTTGAG+AGG + chr7_3:43322409-43322428 None:intergenic 50.0%
AGCTCAAGTCCGAATCCTTC+AGG - chr7_3:43322420-43322439 Msa1105150:intron 50.0%
!! GGATTGGTCTCCGGATTAGT+TGG - chr7_3:43322481-43322500 Msa1105150:intron 50.0%
GAGAGCCCAAATTCGATTCC+TGG + chr7_3:43322562-43322581 None:intergenic 50.0%
TGTTACAAGCCACCCTTTGG+TGG + chr7_3:43323713-43323732 None:intergenic 50.0%
ACCCAGATGTCGCAATTAGG+GGG + chr7_3:43323981-43324000 None:intergenic 50.0%
GCAACCCAGATGTCGCAATT+AGG + chr7_3:43323984-43324003 None:intergenic 50.0%
! GGTGTTTGAGGCTGCAACAA+AGG + chr7_3:43324006-43324025 None:intergenic 50.0%
GGCCATATCTCTAGGCAATG+TGG + chr7_3:43324064-43324083 None:intergenic 50.0%
!! CCTTGCAAAACCGGCTTGTA+AGG + chr7_3:43324121-43324140 None:intergenic 50.0%
!! CCTTACAAGCCGGTTTTGCA+AGG - chr7_3:43324118-43324137 Msa1105150:intron 50.0%
AGTTCCGACATTGCTGGAGT+TGG + chr7_3:43324583-43324602 None:intergenic 50.0%
TGCCCTGAAACTGTTCCACA+AGG - chr7_3:43325308-43325327 Msa1105150:intron 50.0%
AAGAGTCAAGCTCCCAGCTA+TGG - chr7_3:43325564-43325583 Msa1105150:intron 50.0%
GAATGAGCATCCATCCACAC+AGG + chr7_3:43325817-43325836 None:intergenic 50.0%
CGTGTCCTAGTCTCCTTATC+TGG - chr7_3:43326228-43326247 Msa1105150:intron 50.0%
! CCAAAGTGAGCTTTCGAGTC+AGG + chr7_3:43326700-43326719 None:intergenic 50.0%
! CCTGACTCGAAAGCTCACTT+TGG - chr7_3:43326697-43326716 Msa1105150:CDS 50.0%
TCCCCTGCTTCATACTAGAC+AGG - chr7_3:43326790-43326809 Msa1105150:intron 50.0%
! GCAGTGGCTCTACTATGACT+CGG - chr7_3:43327151-43327170 Msa1105150:intron 50.0%
GGCACACACATTCCCTAGAT+TGG - chr7_3:43327401-43327420 Msa1105150:intron 50.0%
GGCTGATCACTGGACAGTTA+AGG - chr7_3:43327871-43327890 Msa1105150:CDS 50.0%
! GCACTTGGGTTGTTTGATGG+TGG - chr7_3:43327945-43327964 Msa1105150:five_prime_UTR 50.0%
TGCTAACCCTCGCGTTCCTA+GGG - chr7_3:43322275-43322294 Msa1105150:intron 55.0%
TCTTTCCCCTAGGAACGCGA+GGG + chr7_3:43322284-43322303 None:intergenic 55.0%
GGCTAGAAACCCACATGGGT+TGG - chr7_3:43322348-43322367 Msa1105150:intron 55.0%
ACAACGAGGCCAACCCATGT+GGG + chr7_3:43322360-43322379 None:intergenic 55.0%
!! ATGGGTTGGCCTCGTTGTGT+AGG - chr7_3:43322362-43322381 Msa1105150:intron 55.0%
GGTCTCAAGCCTACACAACG+AGG + chr7_3:43322374-43322393 None:intergenic 55.0%
!! AGCTTGGTGGGATTGGTCTC+CGG - chr7_3:43322472-43322491 Msa1105150:intron 55.0%
TGCTACAAGCCACCCTTTGG+TGG - chr7_3:43323298-43323317 Msa1105150:intron 55.0%
AGATGTCGCAATTAGGGGGC+GGG + chr7_3:43323977-43323996 None:intergenic 55.0%
CAGATGTCGCAATTAGGGGG+CGG + chr7_3:43323978-43323997 None:intergenic 55.0%
GCCCCCTAATTGCGACATCT+GGG - chr7_3:43323977-43323996 Msa1105150:intron 55.0%
GCAGCCTTCACCTTACAAGC+CGG - chr7_3:43324108-43324127 Msa1105150:intron 55.0%
CTTCATGGGAAGACCCAGGT+TGG + chr7_3:43324620-43324639 None:intergenic 55.0%
CAACCTGGGTCTTCCCATGA+AGG - chr7_3:43324618-43324637 Msa1105150:CDS 55.0%
TCTCCTTCATGGGAAGACCC+AGG + chr7_3:43324624-43324643 None:intergenic 55.0%
CTAGGGAATGTGTGTGCCAG+TGG + chr7_3:43327399-43327418 None:intergenic 55.0%
GACAGTCGCTCCAAACTTCC+CGG - chr7_3:43327771-43327790 Msa1105150:intron 55.0%
GTGCTAACCCTCGCGTTCCT+AGG - chr7_3:43322274-43322293 Msa1105150:intron 60.0%
GCTAACCCTCGCGTTCCTAG+GGG - chr7_3:43322276-43322295 Msa1105150:intron 60.0%
CTCTTTCCCCTAGGAACGCG+AGG + chr7_3:43322285-43322304 None:intergenic 60.0%
CTCGCGTTCCTAGGGGAAAG+AGG - chr7_3:43322283-43322302 Msa1105150:intron 60.0%
CACAACGAGGCCAACCCATG+TGG + chr7_3:43322361-43322380 None:intergenic 60.0%
CGCCCCCTAATTGCGACATC+TGG - chr7_3:43323976-43323995 Msa1105150:intron 60.0%
TAGGGGGCGGGCCACAATGA+AGG + chr7_3:43323965-43323984 None:intergenic 65.0%
GGGGCGGGCCACAATGAAGG+CGG + chr7_3:43323962-43323981 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 43321644 43328004 43321644 ID=Msa1105150;Name=Msa1105150
chr7_3 mRNA 43321644 43328004 43321644 ID=Msa1105150-mRNA-1;Parent=Msa1105150;Name=Msa1105150-mRNA-1;_AED=0.16;_eAED=0.16;_QI=79|0.71|0.62|1|0.42|0.5|8|0|389
chr7_3 exon 43321644 43321913 43321644 ID=Msa1105150-mRNA-1:exon:8890;Parent=Msa1105150-mRNA-1
chr7_3 exon 43322907 43323001 43322907 ID=Msa1105150-mRNA-1:exon:8889;Parent=Msa1105150-mRNA-1
chr7_3 exon 43324550 43324753 43324550 ID=Msa1105150-mRNA-1:exon:8888;Parent=Msa1105150-mRNA-1
chr7_3 exon 43324862 43324975 43324862 ID=Msa1105150-mRNA-1:exon:8887;Parent=Msa1105150-mRNA-1
chr7_3 exon 43324991 43325185 43324991 ID=Msa1105150-mRNA-1:exon:8886;Parent=Msa1105150-mRNA-1
chr7_3 exon 43326574 43326753 43326574 ID=Msa1105150-mRNA-1:exon:8885;Parent=Msa1105150-mRNA-1
chr7_3 exon 43326837 43326865 43326837 ID=Msa1105150-mRNA-1:exon:8884;Parent=Msa1105150-mRNA-1
chr7_3 exon 43327843 43328004 43327843 ID=Msa1105150-mRNA-1:exon:8883;Parent=Msa1105150-mRNA-1
chr7_3 five_prime_UTR 43327926 43328004 43327926 ID=Msa1105150-mRNA-1:five_prime_utr;Parent=Msa1105150-mRNA-1
chr7_3 CDS 43327843 43327925 43327843 ID=Msa1105150-mRNA-1:cds;Parent=Msa1105150-mRNA-1
chr7_3 CDS 43326837 43326865 43326837 ID=Msa1105150-mRNA-1:cds;Parent=Msa1105150-mRNA-1
chr7_3 CDS 43326574 43326753 43326574 ID=Msa1105150-mRNA-1:cds;Parent=Msa1105150-mRNA-1
chr7_3 CDS 43324991 43325185 43324991 ID=Msa1105150-mRNA-1:cds;Parent=Msa1105150-mRNA-1
chr7_3 CDS 43324862 43324975 43324862 ID=Msa1105150-mRNA-1:cds;Parent=Msa1105150-mRNA-1
chr7_3 CDS 43324550 43324753 43324550 ID=Msa1105150-mRNA-1:cds;Parent=Msa1105150-mRNA-1
chr7_3 CDS 43322907 43323001 43322907 ID=Msa1105150-mRNA-1:cds;Parent=Msa1105150-mRNA-1
chr7_3 CDS 43321644 43321913 43321644 ID=Msa1105150-mRNA-1:cds;Parent=Msa1105150-mRNA-1
Gene Sequence

>Msa1105150

ATGGAGAACACAACATTGAAAGACCTTGATCACGATGAACATGAAGAACAAATCCCAGATTCCTTTTGTTGTTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTACTATCTTGTGGTCATATGTGCTGTTTCTGGTGTGTACATAAATCAATGAGTGGGGTGCGCGAATCTAAGTGTCCAACTTGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAAATGCTTCATTTTTTGCTTCTTAAGCTCTATCCTGTTGCTTACAATAGAAGGACCAATCAAACCCTTGAGGAAGAGAAGAAATCAGGCTACTACTCCCCTCAATTTGATCTCGACACATGTGAATCACAAGCTAAATTTGGTCATTCATGTAGCCCTTCTTCCTCCTCTACGATAAATCTGGATTCCAACTCCAGCAATGTCGGAACTTCTGAATGTATGGACCAACCTGGGTCTTCCCATGAAGGAGAACCTGAAATTACTGAAAAAGCATTGCCTCAGGATAATCTTACACAACAGAAAATATCAGTTCCTGACGTGATGTGTACAATGTGCAAGCAACTGCTTTTTCATCCTGTAGTTCTTCATTGCGGTCATGTATATTGTGAAACTTGTGTCTACAAGTTAGCTGATGAGATGCTTAGATGCCAAGTTTGTCAAATTCCACATCCAAGAGGATTTCCGAAAGTCTGTTTGGAGTTTGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGCACAGAGAACAGATGCTATTGAACTAAAGGATGTCAAACTCAAACCTAAGACATCTTCCTCTTGTTTATTAGATAACGGTAACAACGGTGAAAATATGGAATGGTTGTCTGATCCTGACTCGAAAGCTCACTTTGGAGTTGGTTGTGACTTTTGTGGGGAAAAAATAGGTTTTGATCTTTGTGGTGATTGTTACGACAGTCGCTCCAAACTTCCCGGTCGATTTAATCAACAACATACCTCAGATCACAGTTTCAAGCTTGTAGAACCTGACCCTCGTCGTAACATAATGTTGAGGCTGATCACTGGACAGTTAAGGGACCGTTCTTTCAACATCCAGTCTTTAGGAAACATAGAATTTACAGCTGAAGCACTTGGGTTGTTTGATGGTGGCGAAGATAACCAAGATGAACCTGATGCTACAAATTGA

Protein sequence

>Msa1105150

MENTTLKDLDHDEHEEQIPDSFCCCVCLDLLYKPIVLSCGHMCCFWCVHKSMSGVRESKCPTCRHQYYHFPTVCQMLHFLLLKLYPVAYNRRTNQTLEEEKKSGYYSPQFDLDTCESQAKFGHSCSPSSSSTINLDSNSSNVGTSECMDQPGSSHEGEPEITEKALPQDNLTQQKISVPDVMCTMCKQLLFHPVVLHCGHVYCETCVYKLADEMLRCQVCQIPHPRGFPKVCLEFDHFLEEQFPEEYAQRTDAIELKDVKLKPKTSSSCLLDNGNNGENMEWLSDPDSKAHFGVGCDFCGEKIGFDLCGDCYDSRSKLPGRFNQQHTSDHSFKLVEPDPRRNIMLRLITGQLRDRSFNIQSLGNIEFTAEALGLFDGGEDNQDEPDATN*