AlfalfaGEDB | Msa1106280

M. sativa cultivar zhongmu-4 / Msa1106280

KEGG: K04730
GO: -
PFAM: PF08263.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106280	KEH22392.1	71.414	983	255	2	1	957	1	983	0.0	1335

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106280	sp\|Q8VZG8\|MIK2_ARATH	41.497	1029	491	17	12	951	35	1041	0.0	705

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106280	A0A072TYA9	71.414	983	255	2	1	957	1	983	0.0	1335

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1017010	Msa1106280	0.827143	1.841341e-54	-8.615850e-47
Msa1058290	Msa1106280	0.850397	1.743189e-60	-8.615850e-47
Msa1058300	Msa1106280	0.805999	1.017757e-49	-8.615850e-47
Msa1106270	Msa1106280	0.956140	5.934256e-114	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106280	MtrunA17_Chr7g0232631	71.414	983	255	2	1	957	12	994	0.0	1334
Msa1106280	MtrunA17_Chr7g0232451	67.890	981	291	2	1	957	22	1002	0.0	1268
Msa1106280	MtrunA17_Chr7g0232211	59.284	1061	301	8	16	954	22	1073	0.0	1149
Msa1106280	MtrunA17_Chr7g0232171	59.429	1050	297	7	28	954	39	1082	0.0	1126
Msa1106280	MtrunA17_Chr7g0233881	56.330	932	374	5	28	954	42	945	0.0	964
Msa1106280	MtrunA17_Chr7g0232131	57.552	907	309	6	120	954	278	1180	0.0	957
Msa1106280	MtrunA17_Chr7g0232131	43.866	595	282	2	28	570	39	633	4.48e-130	421
Msa1106280	MtrunA17_Chr1g0165221	48.827	1108	393	9	22	957	26	1131	0.0	956
Msa1106280	MtrunA17_Chr1g0165141	47.653	1108	406	9	19	954	21	1126	0.0	935
Msa1106280	MtrunA17_Chr1g0165971	50.482	1038	412	7	20	957	24	1059	0.0	933

Showing 1 to 10 of 1,127 entries

Previous1 2 3 4 5…113Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106280	AT4G08850.1	41.497	1029	491	17	12	951	35	1041	0.0	705
Msa1106280	AT1G35710.1	39.075	1103	470	17	32	951	33	1116	0.0	699
Msa1106280	AT4G08850.2	40.836	933	445	15	12	855	35	949	0.0	615
Msa1106280	AT1G17230.1	34.590	1061	535	17	31	950	26	1068	5.26e-178	546
Msa1106280	AT1G17230.2	34.590	1061	535	17	31	950	26	1068	5.01e-177	545
Msa1106280	AT5G63930.1	34.892	1069	522	25	32	950	30	1074	7.71e-168	520
Msa1106280	AT5G63930.2	36.819	918	484	18	107	950	115	1010	1.73e-166	514
Msa1106280	AT5G63930.2	36.111	504	298	1	92	571	4	507	5.53e-77	273
Msa1106280	AT5G63930.2	33.394	545	314	2	74	570	11	554	4.86e-76	270
Msa1106280	AT5G63930.2	34.426	122	80	0	449	570	1	122	6.54e-11	67.0

Showing 1 to 10 of 1,007 entries

Previous1 2 3 4 5…101Next

Find 179 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACTTTCCAATTTCTAG+AGG	0.534773	7_3:+45731611	None:intergenic
AACAGCAACTACTTGACCTG+TGG	0.543983	7_3:+45730347	None:intergenic
AACCAACCACAGAAGAAGAA+GGG	0.626426	7_3:+45732428	None:intergenic
AACCCTTCTTCTTCTGTGGT+TGG	0.446592	7_3:-45732430	Msa1106280:CDS
AACTAACCCTTCTTCTTCTG+TGG	0.473919	7_3:-45732434	Msa1106280:CDS
AACTCCACTCAACAACAAAT+AGG	0.294705	7_3:-45730320	Msa1106280:CDS
AAGAAGCAATTGCATTTGAT+TGG	0.319939	7_3:-45730131	Msa1106280:CDS
AAGATAACAAAACTTGGCTT+TGG	0.371004	7_3:+45732320	None:intergenic
AAGCAAGTGCTTTGTTGAAG+TGG	0.454651	7_3:-45732360	Msa1106280:CDS
AAGTGTGATGTGTATAGTTT+TGG	0.316577	7_3:-45729766	Msa1106280:CDS

Showing 1 to 10 of 179 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGATAACAAAACTTGGCTT+TGG	+	chr7_3:45729510-45729529	None:intergenic	30.0%
TCCATGAAGATAACAAAACT+TGG	+	chr7_3:45729516-45729535	None:intergenic	30.0%
CTCACAAATATGAGATTGAA+AGG	-	chr7_3:45729607-45729626	Msa1106280:CDS	30.0%
AGATCAAGAATGAGAATGTT+TGG	+	chr7_3:45729664-45729683	None:intergenic	30.0%
TCTCAGTCAAAATAGTTTCA+CGG	-	chr7_3:45729753-45729772	Msa1106280:CDS	30.0%
CTAAAGAAATAGGTGCATTA+TGG	-	chr7_3:45729857-45729876	Msa1106280:intron	30.0%
ATCTCAGTTTCAAATCTAAC+AGG	-	chr7_3:45729898-45729917	Msa1106280:intron	30.0%
GGAAATATCCCAATTTCAAT+AGG	-	chr7_3:45729919-45729938	Msa1106280:CDS	30.0%
GATAAGTTCCCTATTGAAAT+TGG	+	chr7_3:45729931-45729950	None:intergenic	30.0%
GATCTATTCCTCAAGAAATT+GGG	-	chr7_3:45729992-45730011	Msa1106280:CDS	30.0%

Showing 1 to 10 of 212 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	45729373	45732476	45729373	ID=Msa1106280;Name=Msa1106280
chr7_3	mRNA	45729373	45732476	45729373	ID=Msa1106280-mRNA-1;Parent=Msa1106280;Name=Msa1106280-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|1\|0.5\|1\|1\|1\|2\|137\|957
chr7_3	exon	45729373	45729817	45729373	ID=Msa1106280-mRNA-1:exon:9421;Parent=Msa1106280-mRNA-1
chr7_3	exon	45729911	45732476	45729911	ID=Msa1106280-mRNA-1:exon:9420;Parent=Msa1106280-mRNA-1
chr7_3	CDS	45729911	45732476	45729911	ID=Msa1106280-mRNA-1:cds;Parent=Msa1106280-mRNA-1
chr7_3	CDS	45729510	45729817	45729510	ID=Msa1106280-mRNA-1:cds;Parent=Msa1106280-mRNA-1
chr7_3	three_prime_UTR	45729373	45729509	45729373	ID=Msa1106280-mRNA-1:three_prime_utr;Parent=Msa1106280-mRNA-1

Gene Sequence

>Msa1106280

ATGTACTTTTGTGCACTCATAACTAACCCTTCTTCTTCTGTGGTTGGTTCTTCCTTTACTATTCCTTCAGCTTCATCCACTGTACAAAGCAAAGAAGCAAGTGCTTTGTTGAAGTGGAAAGCAAGTCTTGACAACCAAAGCCAAGTTTTGTTATCTTCATGGAGTGGCAATAATTCATGCAACTGGCTTGGAATTTCTTGTAATGAAGATTCCATGTCTGTCTCTGAGGTAAATCTCACAAATATGAGATTGAAAGGTACACTCGAAAATCTTAACTTCTCATTACTTCCAAACATTCTCATTCTTGATCTTAGTGTCAACTTCTTGACTAAAAGTATTCCTCCTCATATTGAGATGTTGTCCAAACTATCCTACCTTGATCTCAGTCAAAATAGTTTCACGGGAACAATACCATATGAAATAACACATTTGACCAATCTTCAATATTTATATTTGAATAGTAATTTTTTTAATGGTACCATTCCTAAAGAAATAGGTGCATTATGGAATTTGAGAGAACTTGATATCTCAGTTTCAAATCTAACAGGAAATATCCCAATTTCAATAGGGAACTTATCCTTCTTGTCAGACTTGTTTCTACATCGCAACAAACTTTGTGGATCTATTCCTCAAGAAATTGGGAAGTTATTGAACATAGAAGTTCTATTTCTTTATGCAAATAGCCTTTCTGGATCTATTCCTCAAGAAATTGGGAAATTGATAAACATACAATATCTAAATCTTCATGACAATAGTCTTTCTGGATCTATTCCTAGAGATATTGGGAAGTTATTGAACTTAGAAATTCTATATCTTCATGTCAATAAACTTTCTGGATCTATTCCTCTAGAAATTGGAAAGTTGTTGAACATAAACCAACTATTTCTTTTTGACAATAATCTTTCTGGTCTTATTCCTAGCGAAATTGGAATGATGAGATCTATGGTGGATATTTGGTTGTCATATAATGCTCTCTCTGGTAAAATACCACCTACAATTGGAAACTTGAGCCATTTACAATCTCTTTCCATTGATGGAAACCATCTTAGTGGGACTATTCCAACGGAATTGAATATGCTTGCTAATTTGATATATTTGGAATTGCAAGATAACAATTTCATTGGTGAATTGCCTCCTAACCTTTGCCAAGGTGGAAACTTAGAAGAGATTACTGCTTCAAATAACCATTTTACAGGGAAAGTTTCAAAGAGTTTGAAGAATTGTTCTAGTCTTACTAGACTCTGGCTTGACAATAACCATTTTGATGGAAACATATTCGATGATTTTGGTGTATACCCAAACTTGAGGTTCATGGCATTGAACAACAATAATTTTTATGGTCACCTTTCCACAAATTGGGGAAAGTTTCATAACCTGGAGCAATTTAGCATGTCCAAAAATAATATATCAGGTTTTATACCGCCTGAACTCAGTGAAGCAACACACTTACATTCAATTGACTTATCTTCAAACCATCTTACTGGAAAAATTCCTAATGAGTTTGGAAAATTTAATGCCCTTCAAAGTCTTGATCTCAGTGGAAATTTTTTGGATGGAACCATACCACCAATGTTTGTAAACCTGATACTCTTAGAAACATTGAATATTTCACATAACAATCTTTCTGGCAATATCCCCTCTTACTTTGATAAGATGAATAGTTTGTCAATTGTTGATATATCATATAACCAATTTAAGGGTCCACTTCCAAACATGCGAGCATTCAATAACGCTTCAATTGAAGTGTTGAGAAATAATACAGGCTTGTGCGGTAATGTTTCTGGCTTGGAGTCTTGCATAAAACCAAGCAGGGTTTCTCATAACCATAAGATTAAGAAAGTGATCTTATTGATAGTTTTGCCTCTTGCACCAGGAACTCTAATGCTAGCATTTGTTTGTTTCAAATTCTCATCTCATCTATGCCAAATGTCAGCCACAAGAGACAAACAGGTTGGAGGAAACATCATTGCTCCTAAAAATGTATTTACAATATGGAGTTTTGATGGGAAAATGGTGTTTGAGAACATTATTGAAGCAACAGAAGAGTTTGATGACGAGCATCTCATTGGAGTAGGAGCGCAAGGATGTGTTTACAAAGCAGAGTTGCCCACAGGTCAAGTAGTTGCTGTTAAAAAACTCCACTCAACAACAAATAGGGAAAACTCTGATCTAAAATTTTTCACAAATGAGATCCATGCTCTGACAGAAATTCGGCATCGTAACATTGTGAAGCTATATGGATTTTGTTCACACTCACACTTGTCGTTTTTGGTTTATGAGTTCATGGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGATGATGAAGAAGCAATTGCATTTGATTGGAATAAGAGGGTGAATGTCATTAAAGATGTGGCTAGTGCTTTATGCTATATGCACCATGGCTGCTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATATTCTTCTGGATTTAGAATATGTGGCTCGTGTCTCAGACTTTGGAACAGCTAAGCTTCTTAATCCTAATTCAGACAATTGTGCCTCATTTGCAGGCACCTATGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAGTGTGATGTGTATAGTTTTGGGGTATTAGCATTGGAAATACTTTATGGAAAACACCCTGGAGATATTATATCTAACTCTTTACAATGGACAATCATGGACTCAACACTTGATTCCATGCCATTGATGAATGAGTTGGATCAACGTCTCCCTCGTCCGATGAATCATATAGCTAAGAAGTTAGTATCCATTGCAAAGACAACAATTTCTTGCTTAGCTGAACGTCCACGATCTCGTCCTACCATGGAGCAGGTTTCCAGGGAGCTTTTAACAGCATAG

Protein sequence

>Msa1106280

MYFCALITNPSSSVVGSSFTIPSASSTVQSKEASALLKWKASLDNQSQVLLSSWSGNNSCNWLGISCNEDSMSVSEVNLTNMRLKGTLENLNFSLLPNILILDLSVNFLTKSIPPHIEMLSKLSYLDLSQNSFTGTIPYEITHLTNLQYLYLNSNFFNGTIPKEIGALWNLRELDISVSNLTGNIPISIGNLSFLSDLFLHRNKLCGSIPQEIGKLLNIEVLFLYANSLSGSIPQEIGKLINIQYLNLHDNSLSGSIPRDIGKLLNLEILYLHVNKLSGSIPLEIGKLLNINQLFLFDNNLSGLIPSEIGMMRSMVDIWLSYNALSGKIPPTIGNLSHLQSLSIDGNHLSGTIPTELNMLANLIYLELQDNNFIGELPPNLCQGGNLEEITASNNHFTGKVSKSLKNCSSLTRLWLDNNHFDGNIFDDFGVYPNLRFMALNNNNFYGHLSTNWGKFHNLEQFSMSKNNISGFIPPELSEATHLHSIDLSSNHLTGKIPNEFGKFNALQSLDLSGNFLDGTIPPMFVNLILLETLNISHNNLSGNIPSYFDKMNSLSIVDISYNQFKGPLPNMRAFNNASIEVLRNNTGLCGNVSGLESCIKPSRVSHNHKIKKVILLIVLPLAPGTLMLAFVCFKFSSHLCQMSATRDKQVGGNIIAPKNVFTIWSFDGKMVFENIIEATEEFDDEHLIGVGAQGCVYKAELPTGQVVAVKKLHSTTNRENSDLKFFTNEIHALTEIRHRNIVKLYGFCSHSHLSFLVYEFMEKGSLEKILKDDEEAIAFDWNKRVNVIKDVASALCYMHHGCSPPIVHRDISSKNILLDLEYVARVSDFGTAKLLNPNSDNCASFAGTYGYAAPELAYTMEVNEKCDVYSFGVLALEILYGKHPGDIISNSLQWTIMDSTLDSMPLMNELDQRLPRPMNHIAKKLVSIAKTTISCLAERPRSRPTMEQVSRELLTA*