AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1106520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106520 MtrunA17_Chr7g0238961 76.104 498 96 4 6 482 260 755 0.0 733
Msa1106520 MtrunA17_Chr7g0238961 63.855 166 58 2 3 168 2 165 1.02e-62 217
Msa1106520 MtrunA17_Chr7g0238971 78.151 476 98 3 1 474 1 472 0.0 726
Msa1106520 MtrunA17_Chr7g0239921 66.042 480 157 2 3 482 28 501 0.0 603
Msa1106520 MtrunA17_Chr7g0239851 54.088 477 209 5 10 482 8 478 4.08e-163 469
Msa1106520 MtrunA17_Chr7g0239831 54.004 487 211 7 5 482 3 485 1.12e-160 464
Msa1106520 MtrunA17_Chr7g0239731 53.862 479 214 4 7 482 4 478 9.81e-160 461
Msa1106520 MtrunA17_Chr7g0239891 52.224 517 197 11 3 481 2 506 1.03e-157 457
Msa1106520 MtrunA17_Chr7g0239911 54.390 467 190 11 1 452 1 459 1.55e-157 455
Msa1106520 MtrunA17_Chr7g0239841 54.713 435 190 5 5 435 3 434 1.57e-152 441
Msa1106520 MtrunA17_Chr3g0078631 52.301 478 180 11 8 476 18 456 2.97e-148 431
Msa1106520 MtrunA17_Chr7g0239901 54.527 486 203 10 9 481 35 515 1.37e-143 421
Msa1106520 MtrunA17_Chr7g0241421 40.927 496 258 9 4 480 6 485 1.72e-109 336
Msa1106520 MtrunA17_Chr7g0241331 40.918 501 257 9 13 481 5 498 3.84e-107 327
Msa1106520 MtrunA17_Chr7g0241331 26.016 246 153 9 1 230 247 479 1.54e-13 72.8
Msa1106520 MtrunA17_Chr7g0239861 45.972 422 199 11 68 481 4 404 1.85e-103 315
Msa1106520 MtrunA17_Chr7g0239791 54.828 290 114 4 194 482 5 278 1.21e-98 298
Msa1106520 MtrunA17_Chr7g0239791 29.596 223 122 9 15 230 71 265 4.40e-17 81.6
Msa1106520 MtrunA17_Chr7g0241161 40.329 486 211 11 4 475 7 427 1.18e-96 298
Msa1106520 MtrunA17_Chr7g0241431 38.650 489 236 10 18 478 1 453 6.47e-96 297
Msa1106520 MtrunA17_Chr7g0241431 27.039 233 148 8 11 229 219 443 5.36e-11 64.7
Msa1106520 MtrunA17_Chr7g0237451 36.187 514 259 12 1 482 1 477 2.80e-92 288
Msa1106520 MtrunA17_Chr7g0241261 36.819 459 229 10 13 456 10 422 8.52e-86 270
Msa1106520 MtrunA17_Chr7g0241261 29.279 222 135 6 256 469 9 216 1.62e-13 72.4
Msa1106520 MtrunA17_Chr1g0166321 35.551 481 252 10 3 459 5 451 9.15e-85 269
Msa1106520 MtrunA17_Chr7g0218371 37.022 497 242 10 4 482 6 449 6.74e-84 266
Msa1106520 MtrunA17_Chr7g0241251 35.181 469 248 8 1 452 1 430 7.51e-83 263
Msa1106520 MtrunA17_Chr7g0241251 27.228 202 109 8 15 214 266 431 9.36e-11 63.9
Msa1106520 MtrunA17_Chr4g0008511 34.638 511 285 14 6 482 2 497 1.08e-77 251
Msa1106520 MtrunA17_Chr7g0241201 40.278 360 199 7 3 350 6 361 1.17e-72 234
Msa1106520 MtrunA17_Chr7g0239741 50.196 255 93 6 236 482 2 230 1.26e-68 219
Msa1106520 MtrunA17_Chr7g0239741 23.288 219 143 4 12 230 24 217 3.00e-11 63.5
Msa1106520 MtrunA17_Chr3g0110221 37.995 379 179 9 91 462 1 330 1.30e-67 221
Msa1106520 MtrunA17_Chr3g0110221 28.729 181 86 6 15 180 137 289 7.76e-11 63.9
Msa1106520 MtrunA17_Chr7g0241271 40.708 339 173 9 2 322 4 332 3.53e-66 216
Msa1106520 MtrunA17_Chr7g0241271 28.761 226 143 6 255 469 13 231 3.43e-13 70.5
Msa1106520 MtrunA17_Chr7g0239761 44.014 284 125 5 3 283 19 271 1.98e-64 210
Msa1106520 MtrunA17_Chr4g0007631 32.190 525 294 18 1 481 1 507 2.14e-61 209
Msa1106520 MtrunA17_Chr7g0241291 37.048 332 169 8 162 477 11 318 4.17e-58 195
Msa1106520 MtrunA17_Chr4g0008481 31.166 523 300 14 6 481 3 512 3.10e-57 198
Msa1106520 MtrunA17_Chr7g0239751 52.582 213 84 3 10 218 30 229 1.31e-56 187
Msa1106520 MtrunA17_Chr7g0263451 42.366 262 144 3 214 471 2 260 4.56e-53 180
Msa1106520 MtrunA17_Chr4g0007271 27.704 527 284 14 1 481 1 476 8.16e-49 174
Msa1106520 MtrunA17_Chr7g0241351 43.961 207 104 3 12 214 16 214 3.59e-47 162
Msa1106520 MtrunA17_Chr7g0241361 41.277 235 116 2 12 246 16 228 1.52e-46 162
Msa1106520 MtrunA17_Chr4g0007341 30.550 491 277 18 1 457 1 461 2.69e-46 167
Msa1106520 MtrunA17_Chr4g0007341 27.386 241 152 5 259 481 16 251 5.19e-13 70.9
Msa1106520 MtrunA17_Chr7g0241311 40.367 218 119 4 1 211 1 214 4.40e-46 160
Msa1106520 MtrunA17_Chr7g0241311 31.285 179 109 6 256 423 10 185 6.87e-13 68.6
Msa1106520 MtrunA17_Chr7g0241511 33.702 362 169 8 159 471 14 353 8.20e-46 163
Msa1106520 MtrunA17_Chr7g0241511 25.243 206 112 7 2 185 96 281 2.10e-12 68.6
Msa1106520 MtrunA17_Chr4g0007251 28.144 501 297 12 6 475 8 476 2.10e-44 162
Msa1106520 MtrunA17_Chr7g0241211 35.814 215 109 2 257 471 1 186 1.54e-35 130
Msa1106520 MtrunA17_Chr2g0291981 51.667 120 58 0 2 121 4 123 3.99e-35 128
Msa1106520 MtrunA17_Chr2g0291981 41.176 85 44 2 256 335 14 97 4.75e-13 66.6
Msa1106520 MtrunA17_Chr7g0241231 47.794 136 70 1 13 148 8 142 1.72e-33 124
Msa1106520 MtrunA17_Chr8g0345251 28.647 377 243 13 113 475 14 378 1.64e-32 127
Msa1106520 MtrunA17_Chr7g0241321 38.342 193 104 3 297 477 1 190 4.85e-29 113
Msa1106520 MtrunA17_Chr4g0007231 32.906 234 123 9 6 215 3 226 2.70e-26 106
Msa1106520 MtrunA17_Chr1g0150201 38.037 163 94 5 91 251 1 158 1.21e-23 97.1
Msa1106520 MtrunA17_Chr8g0355351 32.129 249 136 9 3 236 8 238 3.73e-23 98.2
Msa1106520 MtrunA17_Chr8g0355351 27.391 230 139 7 256 468 13 231 2.70e-16 78.2
Msa1106520 MtrunA17_Chr4g0007221 31.727 249 123 6 253 481 5 226 1.62e-21 93.6
Msa1106520 MtrunA17_Chr4g0007321 30.769 286 157 8 214 471 11 283 3.19e-21 93.6
Msa1106520 MtrunA17_Chr4g0007321 30.556 180 102 6 15 180 64 234 1.05e-12 68.6
Msa1106520 MtrunA17_Chr7g0237481 35.526 152 78 3 256 405 14 147 5.68e-21 90.1
Msa1106520 MtrunA17_Chr7g0241181 42.105 95 55 0 256 350 14 108 1.24e-20 87.4
Msa1106520 MtrunA17_Chr7g0241171 37.576 165 74 2 307 471 8 143 1.60e-20 88.2
Msa1106520 MtrunA17_Chr1g0212741 30.800 250 146 8 1 235 1 238 4.05e-20 89.4
Msa1106520 MtrunA17_Chr1g0212741 28.750 240 128 8 256 469 11 233 1.42e-19 87.8
Msa1106520 MtrunA17_Chr7g0229201 30.165 242 151 7 5 235 3 237 4.94e-19 86.3
Msa1106520 MtrunA17_Chr0c02g0489781 30.165 242 151 7 5 235 3 237 4.94e-19 86.3
Msa1106520 MtrunA17_Chr7g0241301 36.800 125 59 1 1 125 1 105 4.82e-18 80.5
Msa1106520 MtrunA17_Chr1g0150211 35.922 103 66 0 257 359 1 103 1.96e-17 79.3
Msa1106520 MtrunA17_Chr7g0263461 64.815 54 17 1 2 55 31 82 1.68e-14 68.9
Msa1106520 MtrunA17_Chr1g0212771 28.365 208 104 6 6 180 3 198 2.60e-14 71.6
Msa1106520 MtrunA17_Chr7g0241191 33.333 129 81 4 91 216 1 127 1.91e-13 67.8
Msa1106520 MtrunA17_Chr2g0291991 35.294 119 69 2 180 291 2 119 1.72e-12 64.3
Msa1106520 MtrunA17_Chr7g0241501 58.333 48 20 0 18 65 1 48 1.50e-11 59.3
Msa1106520 MtrunA17_Chr7g0241221 39.474 76 43 2 167 240 1 75 4.07e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106520 AT3G09140.2 33.006 509 278 14 11 477 8 495 1.17e-65 220
Msa1106520 AT5G01120.1 32.389 494 287 11 13 474 10 488 1.07e-61 210
Msa1106520 AT3G09140.1 31.285 537 278 15 11 477 8 523 1.21e-60 207
Msa1106520 AT5G01150.1 29.681 502 307 11 7 481 4 486 9.65e-58 199
Msa1106520 AT5G01130.1 30.408 490 285 13 7 482 4 451 1.04e-54 190
Msa1106520 AT3G09110.1 36.076 316 180 7 15 317 12 318 3.19e-53 182
Msa1106520 AT5G01140.1 29.065 492 296 12 7 482 4 458 4.56e-50 178
Msa1106520 AT5G43240.1 29.899 495 296 10 13 471 10 489 4.83e-48 173
Msa1106520 AT5G43240.3 29.899 495 296 10 13 471 10 489 4.83e-48 173
Msa1106520 AT5G43240.4 29.899 495 296 10 13 471 10 489 4.83e-48 173
Msa1106520 AT3G09120.1 36.308 325 173 10 7 310 2 313 1.93e-47 166
Msa1106520 AT3G09120.1 29.185 233 137 8 256 469 6 229 1.19e-13 72.4
Msa1106520 AT5G37320.1 29.622 503 278 18 17 477 13 481 2.95e-38 145
Msa1106520 AT5G43240.2 26.687 326 206 6 168 471 31 345 5.25e-17 82.8

Find 95 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTCGGGGAGAGGTTTA+AGG 0.199576 7_3:+46477487 None:intergenic
AAGAATTTAGACACGCTATT+TGG 0.256696 7_3:-46476078 Msa1106520:three_prime_UTR
CTCCCCGAAGGATTTGTTAA+TGG 0.264468 7_3:-46477477 Msa1106520:CDS
GGTGGAATTGTTCGAATATT+TGG 0.267420 7_3:-46476997 Msa1106520:CDS
TAACTAGCTTCAGAATGATT+TGG 0.271516 7_3:+46477106 None:intergenic
TTTAATCTGTTCACGGAGTT+TGG 0.282622 7_3:-46477390 Msa1106520:CDS
CATCCGATGATGTCAAATAT+TGG 0.288315 7_3:+46476911 None:intergenic
GGGAGAGGTTTAAGGAAAAT+TGG 0.296810 7_3:+46477495 None:intergenic
TGTGAGCCAAACCATTTGTT+AGG 0.313855 7_3:+46476387 None:intergenic
CCATTTCTGTTACCGAACTA+TGG 0.317259 7_3:+46477358 None:intergenic
GTACAAGAGTATAGTTGATT+TGG 0.317989 7_3:-46476941 Msa1106520:CDS
AGTAAATCCAAAGCTGAAAT+TGG 0.320504 7_3:+46476601 None:intergenic
GTCAATACAGTTTGGCTTGA+TGG 0.343980 7_3:+46477422 None:intergenic
ATTGACTCCAATTTCAGCTT+TGG 0.360795 7_3:-46476608 Msa1106520:CDS
CTTGTATGGTCAATACAGTT+TGG 0.366577 7_3:+46477414 None:intergenic
CCTGGTGTTCATGAATATTA+TGG 0.375168 7_3:-46476814 Msa1106520:CDS
TACGTTGATGCGATCATATC+CGG 0.377785 7_3:+46477561 None:intergenic
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7_3:-46477814 Msa1106520:CDS
AACTCCCCTTAATGATTTGA+AGG 0.395649 7_3:-46476566 Msa1106520:CDS
TTATCTAATGTGATGATTCC+TGG 0.396168 7_3:-46476691 Msa1106520:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.403627 7_3:+46477911 None:intergenic
AAAGTCTTGTTTGCTGAAGC+AGG 0.408169 7_3:-46477879 Msa1106520:CDS
TGTTCCTTGGGAAGCATCAA+TGG 0.409256 7_3:-46476967 Msa1106520:CDS
CGAGATATGTAACTAATTTG+AGG 0.410701 7_3:-46476723 Msa1106520:CDS
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7_3:-46477831 Msa1106520:CDS
ATCTGCCCTAACAAATGGTT+TGG 0.417279 7_3:-46476393 Msa1106520:CDS
ATTTGGTGGGAATTGTTCCT+TGG 0.418722 7_3:-46476980 Msa1106520:CDS
TAATCTTCGGCTGAGTTGAT+TGG 0.425110 7_3:+46477669 None:intergenic
TCTGTAGCAAAATACATATC+TGG 0.428362 7_3:+46476649 None:intergenic
ACACCATTAACAAATCCTTC+GGG 0.433848 7_3:+46477474 None:intergenic
AACCATCCCTTGAGAGATCA+AGG 0.434730 7_3:-46477164 Msa1106520:CDS
TACACCATTAACAAATCCTT+CGG 0.434973 7_3:+46477473 None:intergenic
CCATAGTTCGGTAACAGAAA+TGG 0.437481 7_3:-46477358 Msa1106520:CDS
CCTGGTGATGGTTATGTAAA+GGG 0.442731 7_3:-46476673 Msa1106520:CDS
TGAACACCAGGATCAAGAAT+TGG 0.448075 7_3:+46476826 None:intergenic
TGAACAGATTAAAGCTTGTA+TGG 0.453519 7_3:+46477400 None:intergenic
TCTGAATGTCACTAAAGAAA+AGG 0.453648 7_3:-46477334 Msa1106520:intron
ATATTACCAATTCTTGATCC+TGG 0.456535 7_3:-46476832 Msa1106520:CDS
AAGAGCGCTGCAATAATCTT+CGG 0.463496 7_3:+46477656 None:intergenic
TACAAGCTTTAATCTGTTCA+CGG 0.476707 7_3:-46477397 Msa1106520:CDS
TCAACATCTGCCCTAACAAA+TGG 0.480143 7_3:-46476398 Msa1106520:CDS
TTTGGTGGGAATTGTTCCTT+GGG 0.483082 7_3:-46476979 Msa1106520:CDS
AGCATAGGGCAAGTTACATT+CGG 0.484689 7_3:-46477777 Msa1106520:CDS
TCACATGCTAACTGAAGTTA+AGG 0.488277 7_3:-46476369 Msa1106520:CDS
AAAGCTGAAATTGGAGTCAA+TGG 0.488614 7_3:+46476610 None:intergenic
TTTAACTGTGAGGCAATGTA+AGG 0.492529 7_3:+46476868 None:intergenic
TGAAGCAGGGAAGGACTTTG+TGG 0.498966 7_3:-46477865 Msa1106520:CDS
AACAAGTTATTGTATGCTCA+AGG 0.499394 7_3:-46477069 Msa1106520:CDS
CTTGTTTGCTGAAGCAGGGA+AGG 0.500458 7_3:-46477874 Msa1106520:CDS
GAAATCTGTCAAGGTTGACT+TGG 0.503107 7_3:+46477200 None:intergenic
TTAACAAATCCTTCGGGGAG+AGG 0.506746 7_3:+46477480 None:intergenic
CTCTAATGTCTGCTATGCTC+CGG 0.516848 7_3:-46477580 Msa1106520:CDS
GATGTTGCTGTGAAAGTAAA+GGG 0.516851 7_3:+46476152 None:intergenic
GGAATTGTTCGAATATTTGG+TGG 0.517282 7_3:-46476994 Msa1106520:CDS
CATCATCGGATGCTAAGAAC+AGG 0.519251 7_3:-46476900 Msa1106520:CDS
AACCTTGATCTCTCAAGGGA+TGG 0.520022 7_3:+46477162 None:intergenic
AGTTGTCACTATTGGCATCA+AGG 0.520473 7_3:-46476539 Msa1106520:CDS
GTGAGCCAAACCATTTGTTA+GGG 0.520580 7_3:+46476388 None:intergenic
AGCATAGCAGACATTAGAGT+TGG 0.526288 7_3:+46477584 None:intergenic
GTGTGTCTTATGATGATGCT+TGG 0.532332 7_3:-46476316 Msa1106520:three_prime_UTR
GATGATGCTTGGAGGAAAGT+TGG 0.534986 7_3:-46476305 Msa1106520:three_prime_UTR
GCGCATGTGAAGTACTTTGT+TGG 0.540167 7_3:+46477609 None:intergenic
GAATTGTTCGAATATTTGGT+GGG 0.543684 7_3:-46476993 Msa1106520:CDS
TTCCTTAAACCTCTCCCCGA+AGG 0.546449 7_3:-46477489 Msa1106520:CDS
TAGTTCTTATCAGTTTAACA+TGG 0.546650 7_3:-46477970 Msa1106520:exon
TTTCTTACATATCCTTTGGG+TGG 0.551503 7_3:-46477015 Msa1106520:CDS
CCATAATATTCATGAACACC+AGG 0.552460 7_3:+46476814 None:intergenic
TCCTGGTGATGGTTATGTAA+AGG 0.556342 7_3:-46476674 Msa1106520:CDS
AAACCAATATTTGACATCAT+CGG 0.567419 7_3:-46476914 Msa1106520:CDS
AAGTCTTGTTTGCTGAAGCA+GGG 0.569553 7_3:-46477878 Msa1106520:CDS
TCGTTCAAAAGAAGTTTCAA+GGG 0.570431 7_3:+46477912 None:intergenic
CCCTTTACATAACCATCACC+AGG 0.576971 7_3:+46476673 None:intergenic
AGGAAAGTTGGCAATGGACA+AGG 0.577053 7_3:-46476293 Msa1106520:three_prime_UTR
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7_3:-46477805 Msa1106520:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7_3:+46477816 None:intergenic
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7_3:-46477791 Msa1106520:CDS
TGATGTTGCTGTGAAAGTAA+AGG 0.585894 7_3:+46476151 None:intergenic
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7_3:-46477792 Msa1106520:CDS
TGAAGGTTGTTTCTCTACTG+AGG 0.594448 7_3:-46477715 Msa1106520:CDS
AGTTCTTATCAGTTTAACAT+GGG 0.596780 7_3:-46477969 Msa1106520:exon
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7_3:+46477806 None:intergenic
AGTTAAGGACGAGAAATGAA+AGG 0.602642 7_3:-46476354 Msa1106520:exon
CTTGCTTAACTTTAACTGTG+AGG 0.620501 7_3:+46476858 None:intergenic
TGTCTTATGATGATGCTTGG+AGG 0.623582 7_3:-46476313 Msa1106520:three_prime_UTR
GCTTGGAGGAAAGTTGGCAA+TGG 0.630999 7_3:-46476299 Msa1106520:three_prime_UTR
CAATCCATTGATGCTTCCCA+AGG 0.636233 7_3:+46476963 None:intergenic
ATTCGAACAATTCCACCCAA+AGG 0.640069 7_3:+46477003 None:intergenic
ACAAGTTATTGTATGCTCAA+GGG 0.641517 7_3:-46477068 Msa1106520:CDS
AATGTGATGATTCCTGGTGA+TGG 0.650008 7_3:-46476685 Msa1106520:CDS
GATAAATATAAATGTCAGTG+TGG 0.654651 7_3:-46477534 Msa1106520:CDS
AAACTCACTCTATAGAAGTG+TGG 0.661607 7_3:-46477748 Msa1106520:CDS
ATTGTGAACTATATTTGTTG+TGG 0.662634 7_3:+46476213 None:intergenic
AGTGTGGCAGATCTTGATGA+AGG 0.672765 7_3:-46477732 Msa1106520:CDS
CACCATTAACAAATCCTTCG+GGG 0.680088 7_3:+46477475 None:intergenic
TGTCACTATTGGCATCAAGG+AGG 0.742676 7_3:-46476536 Msa1106520:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCCTTCAAATCATTAA+GGG + chr7_3:46477427-46477446 None:intergenic 20.0%
!!! TCTTTTAAAAGATAAGATGT+AGG + chr7_3:46477803-46477822 None:intergenic 20.0%
!!! TTTTTCCTTCAAATCATTAA+GGG + chr7_3:46477427-46477446 None:intergenic 20.0%
!!! TCTTTTAAAAGATAAGATGT+AGG + chr7_3:46477803-46477822 None:intergenic 20.0%
! TAGTTCTTATCAGTTTAACA+TGG - chr7_3:46476015-46476034 Msa1106520:three_prime_UTR 25.0%
! AGTTCTTATCAGTTTAACAT+GGG - chr7_3:46476016-46476035 Msa1106520:three_prime_UTR 25.0%
! GATAAATATAAATGTCAGTG+TGG - chr7_3:46476451-46476470 Msa1106520:intron 25.0%
!! TAACTACTACTGTTTTATAC+AGG - chr7_3:46476732-46476751 Msa1106520:CDS 25.0%
!! AAGTTTTCTTACATATCCTT+TGG - chr7_3:46476966-46476985 Msa1106520:CDS 25.0%
!! AGTTTTCTTACATATCCTTT+GGG - chr7_3:46476967-46476986 Msa1106520:CDS 25.0%
! AAACCAATATTTGACATCAT+CGG - chr7_3:46477071-46477090 Msa1106520:CDS 25.0%
!! CATTTTCAAATTCTCAAATC+TGG - chr7_3:46477231-46477250 Msa1106520:CDS 25.0%
!! TTTTCCTTCAAATCATTAAG+GGG + chr7_3:46477426-46477445 None:intergenic 25.0%
!! CTTTTTCCTTCAAATCATTA+AGG + chr7_3:46477428-46477447 None:intergenic 25.0%
!! ATTGTGAACTATATTTGTTG+TGG + chr7_3:46477775-46477794 None:intergenic 25.0%
!!! ATCTTTTAAAAGACTCATGT+TGG - chr7_3:46477810-46477829 Msa1106520:CDS 25.0%
! TAGTTCTTATCAGTTTAACA+TGG - chr7_3:46476015-46476034 Msa1106520:three_prime_UTR 25.0%
! AGTTCTTATCAGTTTAACAT+GGG - chr7_3:46476016-46476035 Msa1106520:three_prime_UTR 25.0%
! GATAAATATAAATGTCAGTG+TGG - chr7_3:46476451-46476470 Msa1106520:intron 25.0%
!! TAACTACTACTGTTTTATAC+AGG - chr7_3:46476732-46476751 Msa1106520:CDS 25.0%
!! AAGTTTTCTTACATATCCTT+TGG - chr7_3:46476966-46476985 Msa1106520:CDS 25.0%
!! AGTTTTCTTACATATCCTTT+GGG - chr7_3:46476967-46476986 Msa1106520:CDS 25.0%
! AAACCAATATTTGACATCAT+CGG - chr7_3:46477071-46477090 Msa1106520:CDS 25.0%
!! CATTTTCAAATTCTCAAATC+TGG - chr7_3:46477231-46477250 Msa1106520:CDS 25.0%
!! TTTTCCTTCAAATCATTAAG+GGG + chr7_3:46477426-46477445 None:intergenic 25.0%
!! CTTTTTCCTTCAAATCATTA+AGG + chr7_3:46477428-46477447 None:intergenic 25.0%
!! ATTGTGAACTATATTTGTTG+TGG + chr7_3:46477775-46477794 None:intergenic 25.0%
!!! ATCTTTTAAAAGACTCATGT+TGG - chr7_3:46477810-46477829 Msa1106520:CDS 25.0%
TCGTTCAAAAGAAGTTTCAA+GGG + chr7_3:46476076-46476095 None:intergenic 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7_3:46476077-46476096 None:intergenic 30.0%
TACACCATTAACAAATCCTT+CGG + chr7_3:46476515-46476534 None:intergenic 30.0%
TGAACAGATTAAAGCTTGTA+TGG + chr7_3:46476588-46476607 None:intergenic 30.0%
! TACAAGCTTTAATCTGTTCA+CGG - chr7_3:46476588-46476607 Msa1106520:CDS 30.0%
TGGCATAAAAAACCATAGTT+CGG - chr7_3:46476615-46476634 Msa1106520:CDS 30.0%
TCTGAATGTCACTAAAGAAA+AGG - chr7_3:46476651-46476670 Msa1106520:CDS 30.0%
!!! ACCTTGACAGATTTCTTTTT+TGG - chr7_3:46476793-46476812 Msa1106520:CDS 30.0%
!!! CCTTGACAGATTTCTTTTTT+GGG - chr7_3:46476794-46476813 Msa1106520:CDS 30.0%
! TAACTAGCTTCAGAATGATT+TGG + chr7_3:46476882-46476901 None:intergenic 30.0%
AACAAGTTATTGTATGCTCA+AGG - chr7_3:46476916-46476935 Msa1106520:CDS 30.0%
ACAAGTTATTGTATGCTCAA+GGG - chr7_3:46476917-46476936 Msa1106520:CDS 30.0%
GAATTGTTCGAATATTTGGT+GGG - chr7_3:46476992-46477011 Msa1106520:CDS 30.0%
! GTACAAGAGTATAGTTGATT+TGG - chr7_3:46477044-46477063 Msa1106520:CDS 30.0%
ATATTACCAATTCTTGATCC+TGG - chr7_3:46477153-46477172 Msa1106520:CDS 30.0%
CGAGATATGTAACTAATTTG+AGG - chr7_3:46477262-46477281 Msa1106520:intron 30.0%
TTATCTAATGTGATGATTCC+TGG - chr7_3:46477294-46477313 Msa1106520:intron 30.0%
TCTGTAGCAAAATACATATC+TGG + chr7_3:46477339-46477358 None:intergenic 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7_3:46477344-46477363 Msa1106520:CDS 30.0%
AGTAAATCCAAAGCTGAAAT+TGG + chr7_3:46477387-46477406 None:intergenic 30.0%
AAGGAAAAAGTTGTCACTAT+TGG - chr7_3:46477438-46477457 Msa1106520:CDS 30.0%
AAGAATTTAGACACGCTATT+TGG - chr7_3:46477907-46477926 Msa1106520:CDS 30.0%
TCGTTCAAAAGAAGTTTCAA+GGG + chr7_3:46476076-46476095 None:intergenic 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7_3:46476077-46476096 None:intergenic 30.0%
TACACCATTAACAAATCCTT+CGG + chr7_3:46476515-46476534 None:intergenic 30.0%
TGAACAGATTAAAGCTTGTA+TGG + chr7_3:46476588-46476607 None:intergenic 30.0%
! TACAAGCTTTAATCTGTTCA+CGG - chr7_3:46476588-46476607 Msa1106520:CDS 30.0%
TGGCATAAAAAACCATAGTT+CGG - chr7_3:46476615-46476634 Msa1106520:CDS 30.0%
TCTGAATGTCACTAAAGAAA+AGG - chr7_3:46476651-46476670 Msa1106520:CDS 30.0%
!!! ACCTTGACAGATTTCTTTTT+TGG - chr7_3:46476793-46476812 Msa1106520:CDS 30.0%
!!! CCTTGACAGATTTCTTTTTT+GGG - chr7_3:46476794-46476813 Msa1106520:CDS 30.0%
! TAACTAGCTTCAGAATGATT+TGG + chr7_3:46476882-46476901 None:intergenic 30.0%
AACAAGTTATTGTATGCTCA+AGG - chr7_3:46476916-46476935 Msa1106520:CDS 30.0%
ACAAGTTATTGTATGCTCAA+GGG - chr7_3:46476917-46476936 Msa1106520:CDS 30.0%
GAATTGTTCGAATATTTGGT+GGG - chr7_3:46476992-46477011 Msa1106520:CDS 30.0%
! GTACAAGAGTATAGTTGATT+TGG - chr7_3:46477044-46477063 Msa1106520:CDS 30.0%
ATATTACCAATTCTTGATCC+TGG - chr7_3:46477153-46477172 Msa1106520:CDS 30.0%
CGAGATATGTAACTAATTTG+AGG - chr7_3:46477262-46477281 Msa1106520:intron 30.0%
TTATCTAATGTGATGATTCC+TGG - chr7_3:46477294-46477313 Msa1106520:intron 30.0%
TCTGTAGCAAAATACATATC+TGG + chr7_3:46477339-46477358 None:intergenic 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7_3:46477344-46477363 Msa1106520:CDS 30.0%
AGTAAATCCAAAGCTGAAAT+TGG + chr7_3:46477387-46477406 None:intergenic 30.0%
AAGGAAAAAGTTGTCACTAT+TGG - chr7_3:46477438-46477457 Msa1106520:CDS 30.0%
AAGAATTTAGACACGCTATT+TGG - chr7_3:46477907-46477926 Msa1106520:CDS 30.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7_3:46476154-46476173 Msa1106520:three_prime_UTR 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7_3:46476194-46476213 Msa1106520:three_prime_UTR 35.0%
AAACTCACTCTATAGAAGTG+TGG - chr7_3:46476237-46476256 Msa1106520:three_prime_UTR 35.0%
ACACCATTAACAAATCCTTC+GGG + chr7_3:46476514-46476533 None:intergenic 35.0%
CTTGTATGGTCAATACAGTT+TGG + chr7_3:46476574-46476593 None:intergenic 35.0%
TTTAATCTGTTCACGGAGTT+TGG - chr7_3:46476595-46476614 Msa1106520:CDS 35.0%
CCCAAAAAAGAAATCTGTCA+AGG + chr7_3:46476797-46476816 None:intergenic 35.0%
GAAAAACCTTGATCTCTCAA+GGG + chr7_3:46476830-46476849 None:intergenic 35.0%
AGAAAAACCTTGATCTCTCA+AGG + chr7_3:46476831-46476850 None:intergenic 35.0%
TTTCTTACATATCCTTTGGG+TGG - chr7_3:46476970-46476989 Msa1106520:CDS 35.0%
GGTGGAATTGTTCGAATATT+TGG - chr7_3:46476988-46477007 Msa1106520:CDS 35.0%
GGAATTGTTCGAATATTTGG+TGG - chr7_3:46476991-46477010 Msa1106520:CDS 35.0%
CATCCGATGATGTCAAATAT+TGG + chr7_3:46477077-46477096 None:intergenic 35.0%
TTTAACTGTGAGGCAATGTA+AGG + chr7_3:46477120-46477139 None:intergenic 35.0%
CTTGCTTAACTTTAACTGTG+AGG + chr7_3:46477130-46477149 None:intergenic 35.0%
CCATAATATTCATGAACACC+AGG + chr7_3:46477174-46477193 None:intergenic 35.0%
CCTGGTGTTCATGAATATTA+TGG - chr7_3:46477171-46477190 Msa1106520:CDS 35.0%
AAAGCTGAAATTGGAGTCAA+TGG + chr7_3:46477378-46477397 None:intergenic 35.0%
! ATTGACTCCAATTTCAGCTT+TGG - chr7_3:46477377-46477396 Msa1106520:CDS 35.0%
! CATTAAGGGGAGTTTTCAAT+CGG + chr7_3:46477413-46477432 None:intergenic 35.0%
AACTCCCCTTAATGATTTGA+AGG - chr7_3:46477419-46477438 Msa1106520:CDS 35.0%
TCACATGCTAACTGAAGTTA+AGG - chr7_3:46477616-46477635 Msa1106520:CDS 35.0%
AGTTAAGGACGAGAAATGAA+AGG - chr7_3:46477631-46477650 Msa1106520:CDS 35.0%
GATGTTGCTGTGAAAGTAAA+GGG + chr7_3:46477836-46477855 None:intergenic 35.0%
TGATGTTGCTGTGAAAGTAA+AGG + chr7_3:46477837-46477856 None:intergenic 35.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7_3:46476154-46476173 Msa1106520:three_prime_UTR 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7_3:46476194-46476213 Msa1106520:three_prime_UTR 35.0%
AAACTCACTCTATAGAAGTG+TGG - chr7_3:46476237-46476256 Msa1106520:three_prime_UTR 35.0%
ACACCATTAACAAATCCTTC+GGG + chr7_3:46476514-46476533 None:intergenic 35.0%
CTTGTATGGTCAATACAGTT+TGG + chr7_3:46476574-46476593 None:intergenic 35.0%
TTTAATCTGTTCACGGAGTT+TGG - chr7_3:46476595-46476614 Msa1106520:CDS 35.0%
CCCAAAAAAGAAATCTGTCA+AGG + chr7_3:46476797-46476816 None:intergenic 35.0%
GAAAAACCTTGATCTCTCAA+GGG + chr7_3:46476830-46476849 None:intergenic 35.0%
AGAAAAACCTTGATCTCTCA+AGG + chr7_3:46476831-46476850 None:intergenic 35.0%
TTTCTTACATATCCTTTGGG+TGG - chr7_3:46476970-46476989 Msa1106520:CDS 35.0%
GGTGGAATTGTTCGAATATT+TGG - chr7_3:46476988-46477007 Msa1106520:CDS 35.0%
GGAATTGTTCGAATATTTGG+TGG - chr7_3:46476991-46477010 Msa1106520:CDS 35.0%
CATCCGATGATGTCAAATAT+TGG + chr7_3:46477077-46477096 None:intergenic 35.0%
TTTAACTGTGAGGCAATGTA+AGG + chr7_3:46477120-46477139 None:intergenic 35.0%
CTTGCTTAACTTTAACTGTG+AGG + chr7_3:46477130-46477149 None:intergenic 35.0%
CCATAATATTCATGAACACC+AGG + chr7_3:46477174-46477193 None:intergenic 35.0%
CCTGGTGTTCATGAATATTA+TGG - chr7_3:46477171-46477190 Msa1106520:CDS 35.0%
AAAGCTGAAATTGGAGTCAA+TGG + chr7_3:46477378-46477397 None:intergenic 35.0%
! ATTGACTCCAATTTCAGCTT+TGG - chr7_3:46477377-46477396 Msa1106520:CDS 35.0%
! CATTAAGGGGAGTTTTCAAT+CGG + chr7_3:46477413-46477432 None:intergenic 35.0%
AACTCCCCTTAATGATTTGA+AGG - chr7_3:46477419-46477438 Msa1106520:CDS 35.0%
TCACATGCTAACTGAAGTTA+AGG - chr7_3:46477616-46477635 Msa1106520:CDS 35.0%
AGTTAAGGACGAGAAATGAA+AGG - chr7_3:46477631-46477650 Msa1106520:CDS 35.0%
GATGTTGCTGTGAAAGTAAA+GGG + chr7_3:46477836-46477855 None:intergenic 35.0%
TGATGTTGCTGTGAAAGTAA+AGG + chr7_3:46477837-46477856 None:intergenic 35.0%
!! AAAGTCTTGTTTGCTGAAGC+AGG - chr7_3:46476106-46476125 Msa1106520:three_prime_UTR 40.0%
!! AAGTCTTGTTTGCTGAAGCA+GGG - chr7_3:46476107-46476126 Msa1106520:three_prime_UTR 40.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7_3:46476172-46476191 None:intergenic 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7_3:46476171-46476190 Msa1106520:three_prime_UTR 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7_3:46476193-46476212 Msa1106520:three_prime_UTR 40.0%
AGCATAGGGCAAGTTACATT+CGG - chr7_3:46476208-46476227 Msa1106520:three_prime_UTR 40.0%
!! TGAAGGTTGTTTCTCTACTG+AGG - chr7_3:46476270-46476289 Msa1106520:three_prime_UTR 40.0%
!! TAATCTTCGGCTGAGTTGAT+TGG + chr7_3:46476319-46476338 None:intergenic 40.0%
!! AAGAGCGCTGCAATAATCTT+CGG + chr7_3:46476332-46476351 None:intergenic 40.0%
AGCATAGCAGACATTAGAGT+TGG + chr7_3:46476404-46476423 None:intergenic 40.0%
TACGTTGATGCGATCATATC+CGG + chr7_3:46476427-46476446 None:intergenic 40.0%
GGGAGAGGTTTAAGGAAAAT+TGG + chr7_3:46476493-46476512 None:intergenic 40.0%
CACCATTAACAAATCCTTCG+GGG + chr7_3:46476513-46476532 None:intergenic 40.0%
!! GTCAATACAGTTTGGCTTGA+TGG + chr7_3:46476566-46476585 None:intergenic 40.0%
CCATTTCTGTTACCGAACTA+TGG + chr7_3:46476630-46476649 None:intergenic 40.0%
CCATAGTTCGGTAACAGAAA+TGG - chr7_3:46476627-46476646 Msa1106520:CDS 40.0%
GAAATCTGTCAAGGTTGACT+TGG + chr7_3:46476788-46476807 None:intergenic 40.0%
ATTCGAACAATTCCACCCAA+AGG + chr7_3:46476985-46477004 None:intergenic 40.0%
! ATTTGGTGGGAATTGTTCCT+TGG - chr7_3:46477005-46477024 Msa1106520:CDS 40.0%
TTTGGTGGGAATTGTTCCTT+GGG - chr7_3:46477006-46477025 Msa1106520:CDS 40.0%
TGAACACCAGGATCAAGAAT+TGG + chr7_3:46477162-46477181 None:intergenic 40.0%
AATGTGATGATTCCTGGTGA+TGG - chr7_3:46477300-46477319 Msa1106520:intron 40.0%
!! TCCTGGTGATGGTTATGTAA+AGG - chr7_3:46477311-46477330 Msa1106520:intron 40.0%
!! CCTGGTGATGGTTATGTAAA+GGG - chr7_3:46477312-46477331 Msa1106520:intron 40.0%
AGTTGTCACTATTGGCATCA+AGG - chr7_3:46477446-46477465 Msa1106520:CDS 40.0%
TCAACATCTGCCCTAACAAA+TGG - chr7_3:46477587-46477606 Msa1106520:CDS 40.0%
ATCTGCCCTAACAAATGGTT+TGG - chr7_3:46477592-46477611 Msa1106520:CDS 40.0%
! GTGAGCCAAACCATTTGTTA+GGG + chr7_3:46477600-46477619 None:intergenic 40.0%
TGTGAGCCAAACCATTTGTT+AGG + chr7_3:46477601-46477620 None:intergenic 40.0%
! GTGTGTCTTATGATGATGCT+TGG - chr7_3:46477669-46477688 Msa1106520:CDS 40.0%
! TGTCTTATGATGATGCTTGG+AGG - chr7_3:46477672-46477691 Msa1106520:CDS 40.0%
!! AAAGTCTTGTTTGCTGAAGC+AGG - chr7_3:46476106-46476125 Msa1106520:three_prime_UTR 40.0%
!! AAGTCTTGTTTGCTGAAGCA+GGG - chr7_3:46476107-46476126 Msa1106520:three_prime_UTR 40.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7_3:46476172-46476191 None:intergenic 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7_3:46476171-46476190 Msa1106520:three_prime_UTR 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7_3:46476193-46476212 Msa1106520:three_prime_UTR 40.0%
AGCATAGGGCAAGTTACATT+CGG - chr7_3:46476208-46476227 Msa1106520:three_prime_UTR 40.0%
!! TGAAGGTTGTTTCTCTACTG+AGG - chr7_3:46476270-46476289 Msa1106520:three_prime_UTR 40.0%
!! TAATCTTCGGCTGAGTTGAT+TGG + chr7_3:46476319-46476338 None:intergenic 40.0%
!! AAGAGCGCTGCAATAATCTT+CGG + chr7_3:46476332-46476351 None:intergenic 40.0%
AGCATAGCAGACATTAGAGT+TGG + chr7_3:46476404-46476423 None:intergenic 40.0%
TACGTTGATGCGATCATATC+CGG + chr7_3:46476427-46476446 None:intergenic 40.0%
GGGAGAGGTTTAAGGAAAAT+TGG + chr7_3:46476493-46476512 None:intergenic 40.0%
CACCATTAACAAATCCTTCG+GGG + chr7_3:46476513-46476532 None:intergenic 40.0%
!! GTCAATACAGTTTGGCTTGA+TGG + chr7_3:46476566-46476585 None:intergenic 40.0%
CCATTTCTGTTACCGAACTA+TGG + chr7_3:46476630-46476649 None:intergenic 40.0%
CCATAGTTCGGTAACAGAAA+TGG - chr7_3:46476627-46476646 Msa1106520:CDS 40.0%
GAAATCTGTCAAGGTTGACT+TGG + chr7_3:46476788-46476807 None:intergenic 40.0%
ATTCGAACAATTCCACCCAA+AGG + chr7_3:46476985-46477004 None:intergenic 40.0%
! ATTTGGTGGGAATTGTTCCT+TGG - chr7_3:46477005-46477024 Msa1106520:CDS 40.0%
TTTGGTGGGAATTGTTCCTT+GGG - chr7_3:46477006-46477025 Msa1106520:CDS 40.0%
TGAACACCAGGATCAAGAAT+TGG + chr7_3:46477162-46477181 None:intergenic 40.0%
AATGTGATGATTCCTGGTGA+TGG - chr7_3:46477300-46477319 Msa1106520:intron 40.0%
!! TCCTGGTGATGGTTATGTAA+AGG - chr7_3:46477311-46477330 Msa1106520:intron 40.0%
!! CCTGGTGATGGTTATGTAAA+GGG - chr7_3:46477312-46477331 Msa1106520:intron 40.0%
AGTTGTCACTATTGGCATCA+AGG - chr7_3:46477446-46477465 Msa1106520:CDS 40.0%
TCAACATCTGCCCTAACAAA+TGG - chr7_3:46477587-46477606 Msa1106520:CDS 40.0%
ATCTGCCCTAACAAATGGTT+TGG - chr7_3:46477592-46477611 Msa1106520:CDS 40.0%
! GTGAGCCAAACCATTTGTTA+GGG + chr7_3:46477600-46477619 None:intergenic 40.0%
TGTGAGCCAAACCATTTGTT+AGG + chr7_3:46477601-46477620 None:intergenic 40.0%
! GTGTGTCTTATGATGATGCT+TGG - chr7_3:46477669-46477688 Msa1106520:CDS 40.0%
! TGTCTTATGATGATGCTTGG+AGG - chr7_3:46477672-46477691 Msa1106520:CDS 40.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7_3:46476182-46476201 None:intergenic 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7_3:46476180-46476199 Msa1106520:three_prime_UTR 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7_3:46476253-46476272 Msa1106520:three_prime_UTR 45.0%
! GCGCATGTGAAGTACTTTGT+TGG + chr7_3:46476379-46476398 None:intergenic 45.0%
CTCTAATGTCTGCTATGCTC+CGG - chr7_3:46476405-46476424 Msa1106520:CDS 45.0%
TTAACAAATCCTTCGGGGAG+AGG + chr7_3:46476508-46476527 None:intergenic 45.0%
!! CTCCCCGAAGGATTTGTTAA+TGG - chr7_3:46476508-46476527 Msa1106520:intron 45.0%
AACCATCCCTTGAGAGATCA+AGG - chr7_3:46476821-46476840 Msa1106520:CDS 45.0%
AACCTTGATCTCTCAAGGGA+TGG + chr7_3:46476826-46476845 None:intergenic 45.0%
!! TGTTCCTTGGGAAGCATCAA+TGG - chr7_3:46477018-46477037 Msa1106520:CDS 45.0%
CAATCCATTGATGCTTCCCA+AGG + chr7_3:46477025-46477044 None:intergenic 45.0%
CATCATCGGATGCTAAGAAC+AGG - chr7_3:46477085-46477104 Msa1106520:CDS 45.0%
CCCTTTACATAACCATCACC+AGG + chr7_3:46477315-46477334 None:intergenic 45.0%
TGTCACTATTGGCATCAAGG+AGG - chr7_3:46477449-46477468 Msa1106520:CDS 45.0%
GATGATGCTTGGAGGAAAGT+TGG - chr7_3:46477680-46477699 Msa1106520:CDS 45.0%
AGGAAAGTTGGCAATGGACA+AGG - chr7_3:46477692-46477711 Msa1106520:CDS 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7_3:46476182-46476201 None:intergenic 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7_3:46476180-46476199 Msa1106520:three_prime_UTR 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7_3:46476253-46476272 Msa1106520:three_prime_UTR 45.0%
! GCGCATGTGAAGTACTTTGT+TGG + chr7_3:46476379-46476398 None:intergenic 45.0%
CTCTAATGTCTGCTATGCTC+CGG - chr7_3:46476405-46476424 Msa1106520:CDS 45.0%
TTAACAAATCCTTCGGGGAG+AGG + chr7_3:46476508-46476527 None:intergenic 45.0%
!! CTCCCCGAAGGATTTGTTAA+TGG - chr7_3:46476508-46476527 Msa1106520:intron 45.0%
AACCATCCCTTGAGAGATCA+AGG - chr7_3:46476821-46476840 Msa1106520:CDS 45.0%
AACCTTGATCTCTCAAGGGA+TGG + chr7_3:46476826-46476845 None:intergenic 45.0%
!! TGTTCCTTGGGAAGCATCAA+TGG - chr7_3:46477018-46477037 Msa1106520:CDS 45.0%
CAATCCATTGATGCTTCCCA+AGG + chr7_3:46477025-46477044 None:intergenic 45.0%
CATCATCGGATGCTAAGAAC+AGG - chr7_3:46477085-46477104 Msa1106520:CDS 45.0%
CCCTTTACATAACCATCACC+AGG + chr7_3:46477315-46477334 None:intergenic 45.0%
TGTCACTATTGGCATCAAGG+AGG - chr7_3:46477449-46477468 Msa1106520:CDS 45.0%
GATGATGCTTGGAGGAAAGT+TGG - chr7_3:46477680-46477699 Msa1106520:CDS 45.0%
AGGAAAGTTGGCAATGGACA+AGG - chr7_3:46477692-46477711 Msa1106520:CDS 45.0%
! CTTGTTTGCTGAAGCAGGGA+AGG - chr7_3:46476111-46476130 Msa1106520:three_prime_UTR 50.0%
TGAAGCAGGGAAGGACTTTG+TGG - chr7_3:46476120-46476139 Msa1106520:three_prime_UTR 50.0%
TTCCTTAAACCTCTCCCCGA+AGG - chr7_3:46476496-46476515 Msa1106520:intron 50.0%
ATCCTTCGGGGAGAGGTTTA+AGG + chr7_3:46476501-46476520 None:intergenic 50.0%
GCTTGGAGGAAAGTTGGCAA+TGG - chr7_3:46477686-46477705 Msa1106520:CDS 50.0%
! CTTGTTTGCTGAAGCAGGGA+AGG - chr7_3:46476111-46476130 Msa1106520:three_prime_UTR 50.0%
TGAAGCAGGGAAGGACTTTG+TGG - chr7_3:46476120-46476139 Msa1106520:three_prime_UTR 50.0%
TTCCTTAAACCTCTCCCCGA+AGG - chr7_3:46476496-46476515 Msa1106520:intron 50.0%
ATCCTTCGGGGAGAGGTTTA+AGG + chr7_3:46476501-46476520 None:intergenic 50.0%
GCTTGGAGGAAAGTTGGCAA+TGG - chr7_3:46477686-46477705 Msa1106520:CDS 50.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 46475964 46478043 46475964 ID=Msa1106520;Name=Msa1106520
chr7_3 mRNA 46475964 46478043 46475964 ID=Msa1106520-mRNA-1;Parent=Msa1106520;Name=Msa1106520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=70|1|1|1|1|1|3|394|482
chr7_3 exon 46475964 46476450 46475964 ID=Msa1106520-mRNA-1:exon:9534;Parent=Msa1106520-mRNA-1
chr7_3 exon 46476537 46477253 46476537 ID=Msa1106520-mRNA-1:exon:9533;Parent=Msa1106520-mRNA-1
chr7_3 exon 46477335 46478043 46477335 ID=Msa1106520-mRNA-1:exon:9532;Parent=Msa1106520-mRNA-1
chr7_3 five_prime_UTR 46477974 46478043 46477974 ID=Msa1106520-mRNA-1:five_prime_utr;Parent=Msa1106520-mRNA-1
chr7_3 CDS 46477335 46477973 46477335 ID=Msa1106520-mRNA-1:cds;Parent=Msa1106520-mRNA-1
chr7_3 CDS 46476537 46477253 46476537 ID=Msa1106520-mRNA-1:cds;Parent=Msa1106520-mRNA-1
chr7_3 CDS 46476358 46476450 46476358 ID=Msa1106520-mRNA-1:cds;Parent=Msa1106520-mRNA-1
chr7_3 three_prime_UTR 46475964 46476357 46475964 ID=Msa1106520-mRNA-1:three_prime_utr;Parent=Msa1106520-mRNA-1
Gene Sequence

>Msa1106520

ATGGGTGCTACTACTTCTACTCAAGCAGAGAAGCATGTGCCCTTGAAACTTCTTTTGAACGAAAATGATAACAAAGTCTTGTTTGCTGAAGCAGGGAAGGACTTTGTGGATATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGTTACATTCGGTTGTCTAAACTCACTCTATAGAAGTGTGGCAGATCTTGATGAAGGTTGTTTCTCTACTGAGGCAATCAAGCAAATGCTTCTACAACCAATCAACTCAGCCGAAGATTATTGCAGCGCTCTTAAATTCAACATCGATGACACTCAACCAACAAAGTACTTCACATGCGCTGCCAACTCTAATGTCTGCTATGCTCCGGATATGATCGCATCAACGTATAAAGATAAATATAAATGTCAGTGTGGTCGTTCTTTTAGACTTCCAATTTTCCTTAAACCTCTCCCCGAAGGATTTGTTAATGGTGTAGCTACTTTTGTCATAACTGATGATCTCACCATCAAGCCAAACTGTATTGACCATACAAGCTTTAATCTGTTCACGGAGTTTGGCATAAAAAACCATAGTTCGGTAACAGAAATGGTTCTGAATGTCACTAAAGAAAAGGTACTTGATTTGCTAAAGTGTTCTTTGTTTTCCAAGTCAACCTTGACAGATTTCTTTTTTGGGAAGAAACCATCCCTTGAGAGATCAAGGTTTTTCTCGTGTGATTTTAAAATTGTTAATGATATCCAAATCATTCTGAAGCTAGTTATAAGAAAATCAGATAACAAGTTATTGTATGCTCAAGGGCAGCAAGATTTTGCAAACTTACTTTTAAGTTTTCTTACATATCCTTTGGGTGGAATTGTTCGAATATTTGGTGGGAATTGTTCCTTGGGAAGCATCAATGGATTGTACAAGAGTATAGTTGATTTGGATGAAAACCAATATTTGACATCATCGGATGCTAAGAACAGGCTTGTTCATCCTTACATTGCCTCACAGTTAAAGTTAAGCAAGAAGATATTACCAATTCTTGATCCTGGTGTTCATGAATATTATGGTGATTTTAAAAGTTCTGCTAACAGTAATAATATAATTCATTTTCAAATTCTCAAATCTGGAATAGATTCGAGATATGTAACTAATTTGAGGAAAATGAATTTATCTAATGTGATGATTCCTGGTGATGGTTATGTAAAGGGTCCAGATATGTATTTTGCTACAGATGATTTGGTTGTAGCACCATTGACTCCAATTTCAGCTTTGGATTTACTTAACCGATTGAAAACTCCCCTTAATGATTTGAAGGAAAAAGTTGTCACTATTGGCATCAAGGAGTGTCTTAACATATTGAACGCTTCTTTGACATCAACATCTGCCCTAACAAATGGTTTGGCTCACATGCTAACTGAAGTTAAGGACGAGAAATGA
Protein sequence

>Msa1106520

MGATTSTQAEKHVPLKLLLNENDNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQVTFGCLNSLYRSVADLDEGCFSTEAIKQMLLQPINSAEDYCSALKFNIDDTQPTKYFTCAANSNVCYAPDMIASTYKDKYKCQCGRSFRLPIFLKPLPEGFVNGVATFVITDDLTIKPNCIDHTSFNLFTEFGIKNHSSVTEMVLNVTKEKVLDLLKCSLFSKSTLTDFFFGKKPSLERSRFFSCDFKIVNDIQIILKLVIRKSDNKLLYAQGQQDFANLLLSFLTYPLGGIVRIFGGNCSLGSINGLYKSIVDLDENQYLTSSDAKNRLVHPYIASQLKLSKKILPILDPGVHEYYGDFKSSANSNNIIHFQILKSGIDSRYVTNLRKMNLSNVMIPGDGYVKGPDMYFATDDLVVAPLTPISALDLLNRLKTPLNDLKEKVVTIGIKECLNILNASLTSTSALTNGLAHMLTEVKDEK*