AlfalfaGEDB | Msa1111710

M. sativa cultivar zhongmu-4 / Msa1111710

KEGG: K04688
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008285 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045727 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:2000112
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111710	XP_024625957.1	98.020	101	2	0	27	127	242	342	7.59e-63	209

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111710	sp\|Q39030\|KPK2_ARATH	86.667	105	14	0	27	131	234	338	3.20e-62	200

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111710	I1L6Z3	90.909	110	10	0	27	136	244	353	1.92e-66	214

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1111710	Msa1154120	0.802556	5.304049e-49	-8.615850e-47
Msa1111710	Msa1364660	0.866131	3.567436e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111710	MtrunA17_Chr7g0245031	98.020	101	2	0	27	127	242	342	6.98e-67	209
Msa1111710	MtrunA17_Chr4g0059751	67.939	131	35	3	5	128	161	291	4.64e-57	182
Msa1111710	MtrunA17_Chr4g0030361	46.400	125	42	2	27	126	405	529	1.35e-31	117
Msa1111710	MtrunA17_Chr4g0018201	37.654	162	61	3	5	126	822	983	8.32e-31	115
Msa1111710	MtrunA17_Chr5g0428981	37.654	162	61	3	5	126	826	987	1.08e-30	115
Msa1111710	MtrunA17_Chr8g0369091	44.961	129	43	2	27	127	695	823	1.92e-30	114
Msa1111710	MtrunA17_Chr6g0478601	38.037	163	60	3	5	126	174	336	2.58e-29	110
Msa1111710	MtrunA17_Chr2g0327561	42.647	136	42	2	27	126	724	859	6.47e-29	110
Msa1111710	MtrunA17_Chr2g0284011	49.515	103	48	2	28	126	106	208	1.89e-28	108
Msa1111710	MtrunA17_Chr4g0074111	48.077	104	48	3	28	126	112	214	4.03e-28	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111710	AT3G08720.1	86.667	105	14	0	27	131	234	338	3.26e-63	200
Msa1111710	AT3G08720.3	86.667	105	14	0	27	131	234	338	3.26e-63	200
Msa1111710	AT3G08720.4	86.667	105	14	0	27	131	234	338	3.26e-63	200
Msa1111710	AT3G08720.2	86.667	105	14	0	27	131	234	338	3.26e-63	200
Msa1111710	AT3G08730.1	86.667	105	14	0	27	131	228	332	4.14e-63	200
Msa1111710	AT3G08730.2	86.667	105	14	0	27	131	228	332	4.14e-63	200
Msa1111710	AT5G62310.1	39.877	163	57	3	5	126	817	979	2.35e-33	123
Msa1111710	AT5G58140.3	46.512	129	41	2	27	127	673	801	1.78e-31	118
Msa1111710	AT5G58140.6	46.512	129	41	2	27	127	673	801	1.78e-31	118
Msa1111710	AT5G58140.7	46.512	129	41	2	27	127	673	801	1.78e-31	118

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Find 110 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGAGAATATCCTAA+TGG	0.409778	7_3:-57434345	Msa1111710:CDS
AAACTTACCTGAAAAGGCCC+TGG	0.603322	7_3:+57434535	None:intergenic
AAAGCTAAACTTACCTGAAA+AGG	0.456244	7_3:+57434529	None:intergenic
AAATGATGAATCGAGCGAGC+TGG	0.583825	7_3:-57435222	Msa1111710:five_prime_UTR
AACAACCACTGGAGCATACT+TGG	0.381181	7_3:-57435638	Msa1111710:five_prime_UTR
AAGAGCACCCTCACTGCTGA+TGG	0.515838	7_3:+57435487	None:intergenic
AATATCCTAATGGATGCTGA+TGG	0.685490	7_3:-57434335	Msa1111710:CDS
AATCTTCAATGCCAACTCTT+TGG	0.272887	7_3:+57434961	None:intergenic
AATGAGGAGGAAGTTGATGA+AGG	0.582953	7_3:+57435528	None:intergenic
AATGCAGTTCCAAGGAATTT+TGG	0.264772	7_3:+57435553	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAGAAGAAAGAGAGAAAGA+GGG	+	chr7_3:57434140-57434159	None:intergenic	30.0%
TTTAGAAGAAAGAGAGAAAG+AGG	+	chr7_3:57434141-57434160	None:intergenic	30.0%
ACCAACAAAAAATAGATTCG+AGG	+	chr7_3:57434750-57434769	None:intergenic	30.0%
TGAAATGCAGATTGTCAATT+CGG	-	chr7_3:57435050-57435069	Msa1111710:five_prime_UTR	30.0%
CTCAATGATAACATTCTCAA+CGG	+	chr7_3:57435706-57435725	None:intergenic	30.0%
TATCTGAGTTGTACAACAAA+GGG	+	chr7_3:57435963-57435982	None:intergenic	30.0%
AAAGCTAAACTTACCTGAAA+AGG	+	chr7_3:57436199-57436218	None:intergenic	30.0%
AAAACCTGAGAATATCCTAA+TGG	-	chr7_3:57436380-57436399	Msa1111710:intron	30.0%
ACCTGAAATTATTCTTGGAA+AGG	-	chr7_3:57436605-57436624	Msa1111710:intron	30.0%
CCTGAAATTATTCTTGGAAA+GGG	-	chr7_3:57436606-57436625	Msa1111710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	57434013	57436734	57434013	ID=Msa1111710;Name=Msa1111710
chr7_3	mRNA	57434013	57436734	57434013	ID=Msa1111710-mRNA-1;Parent=Msa1111710;Name=Msa1111710-mRNA-1;_AED=0.09;_eAED=0.09;_QI=1081\|0.75\|0.6\|1\|0.75\|0.6\|5\|0\|140
chr7_3	exon	57434013	57434228	57434013	ID=Msa1111710-mRNA-1:exon:12422;Parent=Msa1111710-mRNA-1
chr7_3	exon	57434331	57434491	57434331	ID=Msa1111710-mRNA-1:exon:12421;Parent=Msa1111710-mRNA-1
chr7_3	exon	57434543	57434625	57434543	ID=Msa1111710-mRNA-1:exon:12420;Parent=Msa1111710-mRNA-1
chr7_3	exon	57434755	57435687	57434755	ID=Msa1111710-mRNA-1:exon:12419;Parent=Msa1111710-mRNA-1
chr7_3	exon	57436624	57436734	57436624	ID=Msa1111710-mRNA-1:exon:12418;Parent=Msa1111710-mRNA-1
chr7_3	five_prime_UTR	57436624	57436734	57436624	ID=Msa1111710-mRNA-1:five_prime_utr;Parent=Msa1111710-mRNA-1
chr7_3	five_prime_UTR	57434755	57435687	57434755	ID=Msa1111710-mRNA-1:five_prime_utr;Parent=Msa1111710-mRNA-1
chr7_3	five_prime_UTR	57434589	57434625	57434589	ID=Msa1111710-mRNA-1:five_prime_utr;Parent=Msa1111710-mRNA-1
chr7_3	CDS	57434543	57434588	57434543	ID=Msa1111710-mRNA-1:cds;Parent=Msa1111710-mRNA-1
chr7_3	CDS	57434331	57434491	57434331	ID=Msa1111710-mRNA-1:cds;Parent=Msa1111710-mRNA-1
chr7_3	CDS	57434013	57434228	57434013	ID=Msa1111710-mRNA-1:cds;Parent=Msa1111710-mRNA-1

Gene Sequence

>Msa1111710

ATGGGGGCCATCTATTTTTTCAGCTTTATCACCAGGGCCTTTTCAGTATTAATGTCTGGTTCTAATCTTCAACTATGTGTATTCAGAGAGGATCTAGCACGCATATACGCAGCCGAGATTGTTTCTGCAGTTTCCCATCTCCACTCAAAGGGAATAATGCACAGGGATCTAAAACCTGAGAATATCCTAATGGATGCTGATGGCCATGTTATGTTGACTGATTTTGGATTAGCAAAAAAATTTGAAGAAAGCACAAGATCTAATTCGTTGTGTGGTACAACAGAGTACATGGCACCTGAAATTATTCTTGGAAAGGGCCATGACAAAGCTGCCGATTGGTGGAGTGTAGGCATCTTACTGTTTGAGATGCTCACTGGGAAGGTTTGTATCTTGTTTCCTGTAAATTTTATTGGATCTTCATAG

Protein sequence

>Msa1111710

MGAIYFFSFITRAFSVLMSGSNLQLCVFREDLARIYAAEIVSAVSHLHSKGIMHRDLKPENILMDADGHVMLTDFGLAKKFEESTRSNSLCGTTEYMAPEIILGKGHDKAADWWSVGILLFEMLTGKVCILFPVNFIGSS*