AlfalfaGEDB | Msa1112900

M. sativa cultivar zhongmu-4 / Msa1112900

KEGG: K04371|K04464|K20600
GO: GO:0000003 GO:0000165 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006971 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009504 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009861 GO:0009862 GO:0009863 GO:0009867 GO:0009868 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0014070 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0023014 GO:0023052 GO:0030865 GO:0031122 GO:0032260 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032870 GO:0033206 GO:0033993 GO:0035556 GO:0035690 GO:0035821 GO:0036211 GO:0042221 GO:0042493 GO:0042539 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043622 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045087 GO:0046677 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051321 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052306 GO:0052308 GO:0052552 GO:0052553 GO:0052564 GO:0052572 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071840 GO:0075136 GO:0080026 GO:0097305 GO:0097435 GO:0098542 GO:0140013 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:1902410 GO:1903046 GO:1903047
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112900	XP_003624049.1	98.925	372	4	0	1	372	1	372	0.0	767

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112900	sp\|Q40353\|MMK2_MEDSA	87.062	371	47	1	1	371	1	370	0.0	691

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112900	G7L6L0	98.925	372	4	0	1	372	1	372	0.0	767

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1112900	Msa1156000	0.953016	6.916774e-111	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112900	MtrunA17_Chr7g0248461	98.925	372	4	0	1	372	1	372	0.0	767
Msa1112900	MtrunA17_Chr8g0348481	86.792	371	48	1	1	371	1	370	0.0	693
Msa1112900	MtrunA17_Chr8g0387401	81.616	359	66	0	11	369	25	383	0.0	635
Msa1112900	MtrunA17_Chr5g0397261	78.552	373	77	1	1	370	1	373	0.0	623
Msa1112900	MtrunA17_Chr4g0030231	75.000	360	90	0	6	365	8	367	0.0	585
Msa1112900	MtrunA17_Chr4g0045841	70.752	359	104	1	10	368	27	384	0.0	560
Msa1112900	MtrunA17_Chr4g0030151	65.583	369	124	1	3	368	1	369	0.0	536
Msa1112900	MtrunA17_Chr3g0141871	58.263	357	144	4	13	368	10	362	1.81e-153	437
Msa1112900	MtrunA17_Chr8g0378831	57.143	350	139	5	24	368	19	362	5.10e-143	410
Msa1112900	MtrunA17_Chr3g0102571	45.293	393	162	6	24	366	19	408	4.22e-120	353

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1112900	AT4G01370.1	87.363	364	46	0	4	367	9	372	679
Msa1112900	AT1G01560.2	85.955	356	50	0	12	367	14	369	641
Msa1112900	AT4G11330.1	78.788	363	77	0	9	371	14	376	621
Msa1112900	AT2G46070.3	81.564	358	66	0	11	368	48	405	619
Msa1112900	AT2G46070.1	81.564	358	66	0	11	368	14	371	617
Msa1112900	AT1G07880.2	74.788	353	89	0	13	365	8	360	575
Msa1112900	AT1G01560.3	86.129	310	41	1	12	319	14	323	556
Msa1112900	AT2G43790.1	69.638	359	108	1	10	368	35	392	540
Msa1112900	AT2G46070.2	83.224	304	51	0	11	314	14	317	536
Msa1112900	AT3G45640.1	64.578	367	130	0	1	367	1	367	535

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Find 103 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAAATTGAAAGGTC+TGG	0.409692	7_3:+58894394	None:intergenic
AAAATTCTTGCTTTCTTTGT+TGG	0.305737	7_3:-58898073	Msa1112900:five_prime_UTR
AAATTCTTGCTTTCTTTGTT+GGG	0.366393	7_3:-58898072	Msa1112900:five_prime_UTR
AACAGCGCCAGGAGACATGT+TGG	0.567441	7_3:+58894623	None:intergenic
AACAGCTTCCTCAATATCCA+AGG	0.582062	7_3:-58894668	Msa1112900:CDS
AAGGAGGTAAATTTGTGAAG+TGG	0.556487	7_3:+58898102	None:intergenic
AATCCAAGGCTGGCATCATC+AGG	0.437113	7_3:+58894723	None:intergenic
AATGCAAAATCTCAATAAAT+AGG	0.285910	7_3:+58894296	None:intergenic
AATGCAGGTAATAGCCCTCA+AGG	0.583888	7_3:-58895628	Msa1112900:intron
AATTAAACTTCAGCGGCACA+TGG	0.584009	7_3:-58895915	Msa1112900:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCAAATTAAACCAGACAAT+GGG	+	chr7_3:58894232-58894251	None:intergenic	30.0%
ATCCAAATTAAACCAGACAA+TGG	+	chr7_3:58894233-58894252	None:intergenic	30.0%
ATCTGATCACAACAATATTC+AGG	-	chr7_3:58894294-58894313	Msa1112900:exon	30.0%
TCTGATCACAACAATATTCA+GGG	-	chr7_3:58894295-58894314	Msa1112900:exon	30.0%
CATGACACATCTATGAATTA+CGG	-	chr7_3:58894585-58894604	Msa1112900:CDS	30.0%
ATTCGGTATAACTATTGTCT+CGG	+	chr7_3:58894658-58894677	None:intergenic	30.0%
TTAGTTATTTAGGCCATGTT+TGG	-	chr7_3:58894899-58894918	Msa1112900:CDS	30.0%
TTTCCCTTTCTTAGCTATTT+AGG	-	chr7_3:58895077-58895096	Msa1112900:CDS	30.0%
ATGCCTAAATAGCTAAGAAA+GGG	+	chr7_3:58895083-58895102	None:intergenic	30.0%
ATAATCTCTCACAAATGCTT+AGG	-	chr7_3:58895560-58895579	Msa1112900:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	58894140	58898154	58894140	ID=Msa1112900;Name=Msa1112900
chr7_3	mRNA	58894140	58898154	58894140	ID=Msa1112900-mRNA-1;Parent=Msa1112900;Name=Msa1112900-mRNA-1;_AED=0.07;_eAED=0.07;_QI=140\|1\|1\|1\|0.8\|0.83\|6\|167\|372
chr7_3	exon	58894140	58894482	58894140	ID=Msa1112900-mRNA-1:exon:13020;Parent=Msa1112900-mRNA-1
chr7_3	exon	58894574	58894757	58894574	ID=Msa1112900-mRNA-1:exon:13019;Parent=Msa1112900-mRNA-1
chr7_3	exon	58894882	58895214	58894882	ID=Msa1112900-mRNA-1:exon:13018;Parent=Msa1112900-mRNA-1
chr7_3	exon	58895506	58895643	58895506	ID=Msa1112900-mRNA-1:exon:13017;Parent=Msa1112900-mRNA-1
chr7_3	exon	58895904	58896033	58895904	ID=Msa1112900-mRNA-1:exon:13016;Parent=Msa1112900-mRNA-1
chr7_3	exon	58897857	58898154	58897857	ID=Msa1112900-mRNA-1:exon:13015;Parent=Msa1112900-mRNA-1
chr7_3	five_prime_UTR	58898015	58898154	58898015	ID=Msa1112900-mRNA-1:five_prime_utr;Parent=Msa1112900-mRNA-1
chr7_3	CDS	58897857	58898014	58897857	ID=Msa1112900-mRNA-1:cds;Parent=Msa1112900-mRNA-1
chr7_3	CDS	58895904	58896033	58895904	ID=Msa1112900-mRNA-1:cds;Parent=Msa1112900-mRNA-1
chr7_3	CDS	58895506	58895643	58895506	ID=Msa1112900-mRNA-1:cds;Parent=Msa1112900-mRNA-1
chr7_3	CDS	58894882	58895214	58894882	ID=Msa1112900-mRNA-1:cds;Parent=Msa1112900-mRNA-1
chr7_3	CDS	58894574	58894757	58894574	ID=Msa1112900-mRNA-1:cds;Parent=Msa1112900-mRNA-1
chr7_3	CDS	58894307	58894482	58894307	ID=Msa1112900-mRNA-1:cds;Parent=Msa1112900-mRNA-1
chr7_3	three_prime_UTR	58894140	58894306	58894140	ID=Msa1112900-mRNA-1:three_prime_utr;Parent=Msa1112900-mRNA-1

Gene Sequence

>Msa1112900

ATGTCTCTTGCTTCATCTGATCACAACAATATTCAGGGAGTTCTTACTCATGGTGGACGCTATGTTCAGTATAATATCTACGGTAATTTATTTGAAGTGTCTAACAAGTATGTCCCTCCTATTCGTCCTATTGGAAGAGGAGCTTATGGTATTGTCTGTGCTGCAGTAAATGCGGAGACACGGGAAGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATTGATGCTAAAAGGACCTTACGAGAAATTAAACTTCAGCGGCACATGGATCATGAAAATGTAATAGCCCTCAAGGACATTATACGACCACCACAGACGGAGAATTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGTTCCAATCAACCATTGACTGATGATCATTGTCGGTATTTTCTGTATCAGTTGTTACGAGGACTGAAATATGTACACTCAGCAAACGTTCTTCACCGTGATCTAAAGCCTAGCAACTTGCTACTGAATTCCAATTGTGATCTTAAGATTGGAGACTTTGGTCTAGCTAGAACTACATCTGAAACCGATTTCATGACTGAGTATGTGGTTACTCGATGGTACCGAGCTCCAGAATTGCTTCTAAATTGTTCAGAATATACTGCAGCCATTGATATATGGTCTGTTGGTTGCATCCTTGGTGAAATCATGACAAGACAACCCCTATTTCCTGGGAAAGATTATGTTCATCAGCTCAAATTGATCACAGAGCTCATAGGTTCGCCTGATGATGCCAGCCTTGGATTTATACGAAGTGATAATGCTCGTAGATATGTAAAACAGCTTCCTCAATATCCAAGGCAGCAATTTGCTGCTAGGTTTCCCAACATGTCTCCTGGCGCTGTTGATTTGTTAGAGAGGATGCTTGTTTTTGATCCAAACAGGCGCATTACAGTTGACGAGGCTCTGCGTCACCAATACTTGGCACCTCTCCATGATATTAACGAGGAACCTGTTTGCTCCAGACCTTTCAATTTTGATTTTGAGAAACCGTCTTTCACTGAAGCAGATATCAAGGAGCTCATCTGGAGAGAATCTGTGAAGTTCAATCCTGATCCACCTATTTATTGA

Protein sequence

>Msa1112900

MSLASSDHNNIQGVLTHGGRYVQYNIYGNLFEVSNKYVPPIRPIGRGAYGIVCAAVNAETREEVAIKKVGNAFDNRIDAKRTLREIKLQRHMDHENVIALKDIIRPPQTENFNDVYIVYELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNSNCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTRQPLFPGKDYVHQLKLITELIGSPDDASLGFIRSDNARRYVKQLPQYPRQQFAARFPNMSPGAVDLLERMLVFDPNRRITVDEALRHQYLAPLHDINEEPVCSRPFNFDFEKPSFTEADIKELIWRESVKFNPDPPIY*