AlfalfaGEDB | Msa1115040

M. sativa cultivar zhongmu-4 / Msa1115040

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115040	XP_003625156.1	94.855	758	39	0	22	779	1	758	0.0	1441

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115040	sp\|P93756\|SD31_ARATH	55.616	739	301	13	41	762	16	744	0.0	786

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115040	A2Q3L3	94.855	758	39	0	22	779	1	758	0.0	1441

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1034730	Msa1115040	0.819738	9.921593e-53	-8.615850e-47
Msa1115040	Msa1162090	0.859668	3.528402e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115040	MtrunA17_Chr7g0257821	94.855	758	39	0	22	779	1	758	0.0	1441
Msa1115040	MtrunA17_Chr6g0467301	31.345	721	410	23	104	759	76	776	1.33e-98	324
Msa1115040	MtrunA17_Chr1g0202331	29.362	831	472	27	27	761	7	818	1.40e-96	319
Msa1115040	MtrunA17_Chr6g0467281	29.737	797	486	24	29	768	1	780	2.63e-90	302
Msa1115040	MtrunA17_Chr4g0023071	27.329	805	475	24	34	764	11	779	2.16e-84	285
Msa1115040	MtrunA17_Chr4g0063691	29.136	810	459	30	50	764	36	825	4.68e-79	271
Msa1115040	MtrunA17_Chr2g0323301	28.466	815	474	28	34	771	8	790	4.10e-77	266
Msa1115040	MtrunA17_Chr3g0134291	27.444	798	459	31	50	749	25	800	1.00e-74	259
Msa1115040	MtrunA17_Chr0c04g0492031	27.444	798	459	31	50	749	25	800	1.26e-74	258
Msa1115040	MtrunA17_Chr0c04g0492001	27.318	798	460	31	50	749	25	800	2.14e-73	255

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115040	AT2G41890.1	55.616	739	301	13	41	762	16	744	0.0	786
Msa1115040	AT5G24080.2	31.484	829	451	34	28	761	8	814	9.47e-96	318
Msa1115040	AT1G34300.1	29.572	771	458	29	49	761	25	768	6.04e-89	298
Msa1115040	AT2G19130.1	27.478	797	469	27	41	761	15	778	1.34e-79	273
Msa1115040	AT5G24080.3	30.571	700	381	27	154	761	1	687	9.34e-79	269
Msa1115040	AT5G24080.1	30.571	700	381	27	154	761	1	687	9.34e-79	269
Msa1115040	AT4G00340.1	30.220	771	432	30	55	751	23	761	7.95e-73	254
Msa1115040	AT4G00340.2	30.548	766	415	30	55	751	23	740	2.18e-72	252
Msa1115040	AT1G65800.1	26.733	808	452	32	57	759	36	808	1.48e-59	217
Msa1115040	AT4G32300.1	25.358	769	482	22	54	759	35	774	5.65e-56	206

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Find 184 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCTAAACTCTGTCCT+GGG	0.603037	7_3:-62124378	None:intergenic
AAAGATGACAAATGTTCCTG+AGG	0.654956	7_3:-62125208	None:intergenic
AAAGCTGTTTGGAGTGTGTT+TGG	0.423165	7_3:+62124595	Msa1115040:CDS
AAAGGAAGAAACTTTCCATC+TGG	0.395612	7_3:+62123163	Msa1115040:CDS
AAATGAAATGGAGGTGGTGG+TGG	0.509860	7_3:-62126101	None:intergenic
AAATGAGACTGACAAATGTT+TGG	0.440775	7_3:+62124831	Msa1115040:CDS
AACGAATGCCGACACTAAAC+TGG	0.422322	7_3:-62124084	None:intergenic
AAGAACCTAGTGAAGCTGGA+GGG	0.683062	7_3:+62125513	Msa1115040:CDS
AAGACTATAGTAACTAGTCT+CGG	0.492717	7_3:-62124431	None:intergenic
AAGCACGGAACACAAATCCT+TGG	0.533856	7_3:-62125174	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAGCAAGTACAAGAAAA+AGG	+	chr7_3:62123145-62123164	Msa1115040:CDS	30.0%
GATAACTCACAGAATCATTA+TGG	-	chr7_3:62124627-62124646	None:intergenic	30.0%
AAATGAGACTGACAAATGTT+TGG	+	chr7_3:62124831-62124850	Msa1115040:CDS	30.0%
AATGATATTGAGCTTAGAGA+TGG	-	chr7_3:62125081-62125100	None:intergenic	30.0%
TGAGTTCAATCACAGATATT+TGG	+	chr7_3:62125545-62125564	Msa1115040:CDS	30.0%
GAAATGTGAAAATGTGATGT+TGG	+	chr7_3:62125731-62125750	Msa1115040:CDS	30.0%
TATGGATTTGCAATAGTTGA+TGG	+	chr7_3:62125783-62125802	Msa1115040:CDS	30.0%
CTTGTTGGGTTTAGATTTGA+AGG	-	chr7_3:62122967-62122986	None:intergenic	35.0%
CTTAGCATCCAAGATGAAAA+GGG	-	chr7_3:62123126-62123145	None:intergenic	35.0%
TCTTAGCATCCAAGATGAAA+AGG	-	chr7_3:62123127-62123146	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	62122855	62126172	62122855	ID=Msa1115040;Name=Msa1115040
chr7_3	mRNA	62122855	62126172	62122855	ID=Msa1115040-mRNA-1;Parent=Msa1115040;Name=Msa1115040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=283\|0\|0.5\|1\|0\|0\|2\|0\|779
chr7_3	exon	62122855	62123198	62122855	ID=Msa1115040-mRNA-1:exon:14346;Parent=Msa1115040-mRNA-1
chr7_3	exon	62123894	62126172	62123894	ID=Msa1115040-mRNA-1:exon:14347;Parent=Msa1115040-mRNA-1
chr7_3	five_prime_UTR	62122855	62123137	62122855	ID=Msa1115040-mRNA-1:five_prime_utr;Parent=Msa1115040-mRNA-1
chr7_3	CDS	62123138	62123198	62123138	ID=Msa1115040-mRNA-1:cds;Parent=Msa1115040-mRNA-1
chr7_3	CDS	62123894	62126172	62123894	ID=Msa1115040-mRNA-1:cds;Parent=Msa1115040-mRNA-1

Gene Sequence

>Msa1115040

ATGCTAAGAAAAGCAAGTACAAGAAAAAGGAAGAAACTTTCCATCTGGGTCATGAGATTTGATATGCTTCAACTGGAGTGTTTCCTTAGATTAGGACTGTTGCTGTGTGTTTCATTTGGCTTCTTGCTACATCCTGTTGTAACAGCTGTGATACCATTAGGTTCAAAACTTTCTGTTGTTGATAATAATCGTTGGGTTTCTACCAATGGCGATTTTGCGTTCGGGTTCTTTAACATTTCCGATGAACCTAACCAGTTTAGTGTCGGCATTCGTTTCAATTCACAGTCCATTCCTTATAGCCAACAAGAACTTGTATGGGTTGCTGGTGCTCATGACAAAGTAAGCAACGTGTCCTATTTCCAACTCACTACACAAGGGGAACTTGTCTTGTTTGATTCCTTACATGGAGTCACTGTGTGGACCAGTCACACAGGAAATCGATCTGTTGTTTCGGCTGCTCTTCACGACAATGGAAATCTTGTTCTGACAGATGCAAAACAAAACATTATTTGGCAAAGTTTTAATACTCCTTCTGATACACTTCTCCCAGGACAGAGTTTAGCTGTTTACGACACGCTTCGTGCTTCAACAACAGACCCCGAGACTAGTTACTATAGTCTTTACATGAATGCTTCTGGTCGGTTGCAGCTTCGTTATCAGAGTAATATTGTATACTGGACGAGTGAAAGCCTCTCTTCTACTGGAAATCTCACTGCATTCCTTACAACTGATGGATCTTTGCAACTTCGAGACCAAAATTCGAAAGCTGTTTGGAGTGTGTTTGGAGAAGACCATAATGATTCTGTGAGTTATCGGTTTCTAAGGCTAGATTTGGATGGTAATCTCCGGTTATTCTCATGGATGGAAGCTTCACAATCATGGAGATCTGTTTGGCAAGCTGTTGAGAATCAATGCAAAGTTTTTGCTACTTGTGGCCAACGTGGTGTCTGTGTCTTCACTGCTTCAGGTTCTGCCGAATGCCGGTGCCCTTTTGAGGTAAATGAGACTGACAAATGTTTGGTTCCGTATGAACAAGGTTGTGCATCTGGCACCAACATGCAACAATACAAAAATTTACATCTATATGGAATTTATTCTTCAGATGATTCAGTTGTCACAACTAGCCTGCAGCAATGCGAACAGTTGTGCCTGAATGACTCTCGGTGTACAGTCGCAACTTTTTCCAACAATGGGGGTCCACAATGCTCCATAATGAAAACCAGGTACATAACTGGCTATGAAGATCCATCTCTAAGCTCAATATCATTTGTTAAGAGCTGCTCAGGTCCATTTGCCGTAAATCCTGGTATCATGAAGTCGCCTCCATCTAAACCTTCTCCTCCAAGGATTTGTGTTCCGTGCTTGGTTGGGGCAGCCTCAGGAACATTTGTCATCTTTGCTTTTGTGCAGCTGGGAATTGTTTTCTTCATCTGTAGAAGAAAAAGCTCTGCTATGAGAAGAGTCACATTAGCTTTCACATTCCCGAATTCTAAAGGTTTAATGGTGTTATCCTTCTCAGAAATTAAGAGCATCACTGGTGATTTCAAGAATCGAGTAGGGCCAAATACGTTCAAGGGTGTGCTACCGAGCAATCGTCTGATGGCAATCAAAGACCTGAATGCAACCATAGAAGAAAGGAAATTCCGGAGTGCTGTTCTGAAGATAGGGAGCATCCACCACAAGAACCTAGTGAAGCTGGAGGGTTATTGCTGTGAGTTCAATCACAGATATTTGGTGTATGAATACGCCAAAAATGGTTCGCTGGAAAAGCATTTAGATGACTCTAGTCTATGCAAGAGGCTAACTTGGAGAAAGAGAGTTGAAATATGCTCAAGTGTTGCGAAGGCCATCTGTTATTTGCACTCAGGGTGTAGGGAGTTCTTAAGCCACGGGAATTTGAAATGTGAAAATGTGATGTTGGATGAAGATTCAGTTGCTAAGGTGTCTGAATATGGATTTGCAATAGTTGATGGTGAGGCTACATATTGCGGCTTTTCAGCTGGAAAAGATGTAGGAGATTTTGGCAAACTAGTATTAACCTTGTTGACCGGGCGTCGAGATCACGAACAAGTTTGTGAATGGGCATACAAAGAATGGACGGAAGGGAGGGTAGCTAATGTGGTTGATAAAAGAATTGTCGGTGGTGCTGATTTGGAGGAACTTGAACGCTCATTAAGAATCGCATTCTGGTGCATTCAAGTCAATGAACATAGAAGACCTCCAATGGAAGAGGTAGTGAGAGTACTAGATGGTACGTTGAATGTTGATCCACCACCACCTCCATTTCATTTGCCATTTGATCCACAAGAAAATGGTTCAGAAACAGAATCAGTGGTTTAG

Protein sequence

>Msa1115040

MLRKASTRKRKKLSIWVMRFDMLQLECFLRLGLLLCVSFGFLLHPVVTAVIPLGSKLSVVDNNRWVSTNGDFAFGFFNISDEPNQFSVGIRFNSQSIPYSQQELVWVAGAHDKVSNVSYFQLTTQGELVLFDSLHGVTVWTSHTGNRSVVSAALHDNGNLVLTDAKQNIIWQSFNTPSDTLLPGQSLAVYDTLRASTTDPETSYYSLYMNASGRLQLRYQSNIVYWTSESLSSTGNLTAFLTTDGSLQLRDQNSKAVWSVFGEDHNDSVSYRFLRLDLDGNLRLFSWMEASQSWRSVWQAVENQCKVFATCGQRGVCVFTASGSAECRCPFEVNETDKCLVPYEQGCASGTNMQQYKNLHLYGIYSSDDSVVTTSLQQCEQLCLNDSRCTVATFSNNGGPQCSIMKTRYITGYEDPSLSSISFVKSCSGPFAVNPGIMKSPPSKPSPPRICVPCLVGAASGTFVIFAFVQLGIVFFICRRKSSAMRRVTLAFTFPNSKGLMVLSFSEIKSITGDFKNRVGPNTFKGVLPSNRLMAIKDLNATIEERKFRSAVLKIGSIHHKNLVKLEGYCCEFNHRYLVYEYAKNGSLEKHLDDSSLCKRLTWRKRVEICSSVAKAICYLHSGCREFLSHGNLKCENVMLDEDSVAKVSEYGFAIVDGEATYCGFSAGKDVGDFGKLVLTLLTGRRDHEQVCEWAYKEWTEGRVANVVDKRIVGGADLEELERSLRIAFWCIQVNEHRRPPMEEVVRVLDGTLNVDPPPPPFHLPFDPQENGSETESVV*