Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1131200 | XP_013446470.1 | 90.368 | 353 | 23 | 5 | 1 | 352 | 1 | 343 | 0.0 | 560 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1131200 | sp|Q84TE9|DOF53_ARATH | 58.416 | 101 | 35 | 3 | 63 | 160 | 42 | 138 | 4.47e-32 | 124 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1131200 | A0A072TSV2 | 90.368 | 353 | 23 | 5 | 1 | 352 | 1 | 343 | 0.0 | 560 |
Gene ID | Type | Classification |
---|---|---|
Msa1131200 | TF | C2C2-Dof |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0769690 | Msa1131200 | 0.804989 | 1.657127e-49 | -8.615850e-47 |
Msa1131200 | Msa1255700 | 0.988499 | 2.945200e-174 | -8.615850e-47 |
Msa1131200 | Msa1305210 | 0.987700 | 3.250746e-171 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1131200 | MtrunA17_Chr8g0374251 | 90.368 | 353 | 23 | 5 | 1 | 352 | 1 | 343 | 0.0 | 560 |
Msa1131200 | MtrunA17_Chr4g0031411 | 68.354 | 79 | 16 | 1 | 70 | 139 | 72 | 150 | 4.55e-33 | 125 |
Msa1131200 | MtrunA17_Chr2g0328021 | 76.190 | 63 | 15 | 0 | 73 | 135 | 62 | 124 | 4.62e-33 | 124 |
Msa1131200 | MtrunA17_Chr7g0223311 | 76.562 | 64 | 15 | 0 | 74 | 137 | 78 | 141 | 8.66e-32 | 122 |
Msa1131200 | MtrunA17_Chr8g0367161 | 55.556 | 90 | 40 | 0 | 60 | 149 | 19 | 108 | 4.73e-31 | 120 |
Msa1131200 | MtrunA17_Chr5g0411951 | 92.157 | 51 | 4 | 0 | 73 | 123 | 43 | 93 | 6.58e-31 | 119 |
Msa1131200 | MtrunA17_Chr4g0047001 | 79.661 | 59 | 12 | 0 | 74 | 132 | 56 | 114 | 7.96e-31 | 120 |
Msa1131200 | MtrunA17_Chr3g0126201 | 62.025 | 79 | 26 | 1 | 52 | 126 | 26 | 104 | 1.98e-30 | 118 |
Msa1131200 | MtrunA17_Chr7g0237921 | 78.947 | 57 | 12 | 0 | 70 | 126 | 73 | 129 | 2.89e-30 | 118 |
Msa1131200 | MtrunA17_Chr8g0374111 | 57.143 | 84 | 36 | 0 | 65 | 148 | 21 | 104 | 6.04e-30 | 114 |
Msa1131200 | MtrunA17_Chr8g0346551 | 63.158 | 76 | 28 | 0 | 70 | 145 | 21 | 96 | 6.31e-30 | 115 |
Msa1131200 | MtrunA17_Chr3g0127201 | 62.338 | 77 | 29 | 0 | 50 | 126 | 4 | 80 | 1.02e-29 | 115 |
Msa1131200 | MtrunA17_Chr4g0010151 | 81.481 | 54 | 10 | 0 | 73 | 126 | 82 | 135 | 1.63e-29 | 116 |
Msa1131200 | MtrunA17_Chr4g0030051 | 84.906 | 53 | 8 | 0 | 73 | 125 | 41 | 93 | 2.13e-29 | 114 |
Msa1131200 | MtrunA17_Chr4g0061761 | 86.275 | 51 | 7 | 0 | 73 | 123 | 40 | 90 | 2.69e-29 | 115 |
Msa1131200 | MtrunA17_Chr8g0341671 | 80.000 | 55 | 11 | 0 | 70 | 124 | 17 | 71 | 3.18e-29 | 112 |
Msa1131200 | MtrunA17_Chr2g0326001 | 85.185 | 54 | 8 | 0 | 73 | 126 | 40 | 93 | 4.98e-29 | 113 |
Msa1131200 | MtrunA17_Chr1g0177251 | 81.034 | 58 | 11 | 0 | 69 | 126 | 8 | 65 | 1.85e-28 | 112 |
Msa1131200 | MtrunA17_Chr2g0282441 | 83.636 | 55 | 8 | 1 | 70 | 124 | 23 | 76 | 3.05e-28 | 112 |
Msa1131200 | MtrunA17_Chr3g0117601 | 78.571 | 56 | 9 | 1 | 71 | 123 | 56 | 111 | 9.79e-28 | 111 |
Msa1131200 | MtrunA17_Chr2g0308011 | 85.714 | 49 | 7 | 0 | 73 | 121 | 37 | 85 | 1.88e-27 | 107 |
Msa1131200 | MtrunA17_Chr4g0047761 | 78.947 | 57 | 11 | 1 | 72 | 128 | 71 | 126 | 2.86e-27 | 109 |
Msa1131200 | MtrunA17_Chr1g0188851 | 72.414 | 58 | 16 | 0 | 68 | 125 | 38 | 95 | 7.14e-27 | 107 |
Msa1131200 | MtrunA17_Chr2g0282511 | 83.673 | 49 | 8 | 0 | 73 | 121 | 45 | 93 | 8.04e-27 | 108 |
Msa1131200 | MtrunA17_Chr2g0283811 | 50.515 | 97 | 42 | 2 | 75 | 171 | 49 | 139 | 1.83e-26 | 103 |
Msa1131200 | MtrunA17_Chr2g0282051 | 73.214 | 56 | 14 | 1 | 73 | 128 | 46 | 100 | 1.09e-25 | 104 |
Msa1131200 | MtrunA17_Chr4g0042481 | 50.000 | 98 | 43 | 2 | 40 | 131 | 83 | 180 | 2.59e-25 | 106 |
Msa1131200 | MtrunA17_Chr6g0453321 | 75.926 | 54 | 13 | 0 | 73 | 126 | 136 | 189 | 2.93e-25 | 106 |
Msa1131200 | MtrunA17_Chr6g0460731 | 35.955 | 178 | 95 | 4 | 41 | 204 | 60 | 232 | 5.29e-25 | 103 |
Msa1131200 | MtrunA17_Chr7g0254161 | 57.895 | 76 | 32 | 0 | 73 | 148 | 101 | 176 | 5.76e-25 | 104 |
Msa1131200 | MtrunA17_Chr7g0217581 | 43.590 | 117 | 48 | 2 | 29 | 127 | 170 | 286 | 6.14e-25 | 105 |
Msa1131200 | MtrunA17_Chr5g0417571 | 52.577 | 97 | 40 | 2 | 44 | 135 | 105 | 200 | 1.00e-24 | 102 |
Msa1131200 | MtrunA17_Chr3g0092111 | 72.222 | 54 | 15 | 0 | 73 | 126 | 136 | 189 | 1.40e-24 | 103 |
Msa1131200 | MtrunA17_Chr8g0355261 | 56.164 | 73 | 32 | 0 | 73 | 145 | 118 | 190 | 1.98e-24 | 103 |
Msa1131200 | MtrunA17_Chr6g0460721 | 47.826 | 92 | 44 | 2 | 41 | 128 | 53 | 144 | 2.97e-24 | 101 |
Msa1131200 | MtrunA17_Chr5g0417601 | 67.188 | 64 | 20 | 1 | 75 | 138 | 142 | 204 | 1.00e-23 | 100 |
Msa1131200 | MtrunA17_Chr5g0417551 | 47.872 | 94 | 47 | 1 | 44 | 135 | 96 | 189 | 1.11e-22 | 97.8 |
Msa1131200 | MtrunA17_Chr5g0417561 | 48.936 | 94 | 46 | 1 | 44 | 135 | 88 | 181 | 1.13e-22 | 97.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1131200 | AT5G60200.1 | 58.416 | 101 | 35 | 3 | 63 | 160 | 42 | 138 | 4.55e-33 | 124 |
Msa1131200 | AT5G65590.1 | 55.102 | 98 | 44 | 0 | 40 | 137 | 8 | 105 | 3.42e-32 | 123 |
Msa1131200 | AT1G07640.1 | 90.566 | 53 | 5 | 0 | 73 | 125 | 21 | 73 | 6.59e-32 | 121 |
Msa1131200 | AT1G07640.2 | 90.566 | 53 | 5 | 0 | 73 | 125 | 77 | 129 | 9.82e-32 | 122 |
Msa1131200 | AT1G51700.1 | 63.750 | 80 | 23 | 1 | 51 | 124 | 5 | 84 | 1.26e-31 | 118 |
Msa1131200 | AT1G07640.3 | 90.566 | 53 | 5 | 0 | 73 | 125 | 85 | 137 | 1.28e-31 | 122 |
Msa1131200 | AT2G28810.2 | 86.538 | 52 | 7 | 0 | 73 | 124 | 77 | 128 | 3.93e-31 | 120 |
Msa1131200 | AT2G28810.1 | 86.538 | 52 | 7 | 0 | 73 | 124 | 94 | 145 | 5.80e-31 | 120 |
Msa1131200 | AT5G60850.1 | 72.222 | 72 | 15 | 1 | 73 | 139 | 51 | 122 | 7.30e-31 | 119 |
Msa1131200 | AT2G37590.1 | 78.947 | 57 | 12 | 0 | 70 | 126 | 86 | 142 | 1.20e-30 | 119 |
Msa1131200 | AT3G21270.1 | 88.679 | 53 | 6 | 0 | 73 | 125 | 29 | 81 | 1.24e-30 | 115 |
Msa1131200 | AT3G45610.1 | 69.697 | 66 | 20 | 0 | 73 | 138 | 40 | 105 | 7.97e-30 | 115 |
Msa1131200 | AT5G02460.1 | 83.333 | 54 | 9 | 0 | 73 | 126 | 95 | 148 | 1.49e-29 | 117 |
Msa1131200 | AT3G55370.3 | 50.467 | 107 | 48 | 2 | 33 | 139 | 83 | 184 | 1.91e-29 | 116 |
Msa1131200 | AT3G55370.1 | 73.134 | 67 | 15 | 1 | 73 | 139 | 76 | 139 | 2.04e-29 | 115 |
Msa1131200 | AT3G55370.2 | 50.467 | 107 | 48 | 2 | 33 | 139 | 38 | 139 | 2.05e-29 | 116 |
Msa1131200 | AT4G38000.1 | 67.105 | 76 | 24 | 1 | 52 | 126 | 20 | 95 | 2.52e-29 | 113 |
Msa1131200 | AT1G28310.2 | 53.125 | 96 | 44 | 1 | 34 | 128 | 11 | 106 | 1.15e-28 | 114 |
Msa1131200 | AT3G50410.1 | 73.016 | 63 | 17 | 0 | 63 | 125 | 20 | 82 | 1.35e-28 | 112 |
Msa1131200 | AT1G28310.1 | 78.571 | 56 | 12 | 0 | 73 | 128 | 27 | 82 | 1.74e-28 | 113 |
Msa1131200 | AT3G61850.2 | 56.383 | 94 | 40 | 1 | 34 | 126 | 22 | 115 | 2.09e-28 | 112 |
Msa1131200 | AT3G61850.3 | 56.383 | 94 | 40 | 1 | 34 | 126 | 22 | 115 | 2.09e-28 | 112 |
Msa1131200 | AT3G61850.1 | 56.383 | 94 | 40 | 1 | 34 | 126 | 34 | 127 | 2.20e-28 | 112 |
Msa1131200 | AT3G61850.5 | 56.383 | 94 | 40 | 1 | 34 | 126 | 22 | 115 | 3.02e-28 | 112 |
Msa1131200 | AT3G61850.4 | 56.383 | 94 | 40 | 1 | 34 | 126 | 34 | 127 | 3.22e-28 | 112 |
Msa1131200 | AT3G52440.1 | 84.615 | 52 | 8 | 0 | 75 | 126 | 27 | 78 | 3.37e-28 | 110 |
Msa1131200 | AT2G28510.1 | 82.692 | 52 | 9 | 0 | 75 | 126 | 50 | 101 | 3.58e-28 | 111 |
Msa1131200 | AT3G52440.2 | 84.615 | 52 | 8 | 0 | 75 | 126 | 46 | 97 | 4.25e-28 | 110 |
Msa1131200 | AT5G66940.1 | 60.274 | 73 | 29 | 0 | 67 | 139 | 26 | 98 | 4.67e-28 | 109 |
Msa1131200 | AT1G21340.1 | 55.056 | 89 | 39 | 1 | 75 | 162 | 40 | 128 | 1.34e-27 | 109 |
Msa1131200 | AT4G00940.1 | 57.471 | 87 | 37 | 0 | 63 | 149 | 58 | 144 | 2.31e-27 | 109 |
Msa1131200 | AT4G00940.3 | 57.471 | 87 | 37 | 0 | 63 | 149 | 58 | 144 | 2.31e-27 | 109 |
Msa1131200 | AT4G00940.2 | 57.471 | 87 | 37 | 0 | 63 | 149 | 58 | 144 | 2.31e-27 | 109 |
Msa1131200 | AT4G21050.1 | 65.625 | 64 | 22 | 0 | 71 | 134 | 22 | 85 | 5.64e-27 | 106 |
Msa1131200 | AT4G24060.1 | 70.968 | 62 | 18 | 0 | 65 | 126 | 45 | 106 | 9.72e-27 | 108 |
Msa1131200 | AT5G62940.1 | 80.000 | 50 | 10 | 0 | 74 | 123 | 74 | 123 | 4.27e-26 | 107 |
Msa1131200 | AT1G29160.1 | 58.667 | 75 | 31 | 0 | 52 | 126 | 41 | 115 | 3.30e-25 | 100 |
Msa1131200 | AT5G39660.3 | 51.402 | 107 | 35 | 1 | 38 | 127 | 86 | 192 | 3.33e-25 | 106 |
Msa1131200 | AT5G39660.1 | 51.402 | 107 | 35 | 1 | 38 | 127 | 86 | 192 | 3.33e-25 | 106 |
Msa1131200 | AT5G39660.2 | 51.402 | 107 | 35 | 1 | 38 | 127 | 86 | 192 | 3.33e-25 | 106 |
Msa1131200 | AT2G46590.1 | 52.809 | 89 | 40 | 1 | 34 | 120 | 27 | 115 | 6.13e-25 | 104 |
Msa1131200 | AT2G46590.2 | 52.809 | 89 | 40 | 1 | 34 | 120 | 39 | 127 | 7.19e-25 | 104 |
Msa1131200 | AT3G47500.1 | 74.545 | 55 | 14 | 0 | 73 | 127 | 110 | 164 | 7.56e-25 | 105 |
Msa1131200 | AT2G34140.1 | 55.263 | 76 | 34 | 0 | 51 | 126 | 36 | 111 | 8.91e-25 | 99.4 |
Msa1131200 | AT1G69570.1 | 55.844 | 77 | 34 | 0 | 63 | 139 | 122 | 198 | 1.74e-24 | 103 |
Msa1131200 | AT1G64620.1 | 71.930 | 57 | 16 | 0 | 65 | 121 | 41 | 97 | 1.80e-24 | 102 |
Msa1131200 | AT1G26790.1 | 45.794 | 107 | 51 | 3 | 57 | 160 | 92 | 194 | 3.67e-24 | 102 |
Msa1131200 | AT5G62430.1 | 74.074 | 54 | 14 | 0 | 73 | 126 | 54 | 107 | 4.93e-24 | 100 |
Msa1131200 | AT1G47655.1 | 61.972 | 71 | 23 | 2 | 54 | 121 | 8 | 77 | 1.34e-23 | 97.4 |
Msa1131200 | AT4G21040.1 | 73.585 | 53 | 14 | 0 | 75 | 127 | 27 | 79 | 4.80e-23 | 96.3 |
Msa1131200 | AT4G21080.1 | 61.538 | 65 | 25 | 0 | 75 | 139 | 27 | 91 | 2.50e-22 | 94.7 |
Msa1131200 | AT4G21030.1 | 56.000 | 50 | 22 | 0 | 75 | 124 | 23 | 72 | 1.91e-13 | 68.6 |
Find 102 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGATTGTTTCTCCAAAA+TGG | 0.139233 | 7_3:+83729298 | None:intergenic |
TTCCTCTATATCCAACATTT+TGG | 0.175939 | 7_3:-83729074 | Msa1131200:CDS |
TCAGTTACTGGTGGTGAATT+AGG | 0.188537 | 7_3:-83729043 | Msa1131200:CDS |
TCCTCCAACTCCTCCATTAA+TGG | 0.195655 | 7_3:+83729933 | None:intergenic |
GTTATACTTATTACTGATAT+TGG | 0.212000 | 7_3:+83728954 | None:intergenic |
CATGATTAGGGTTAGGGTTT+TGG | 0.228883 | 7_3:+83729431 | None:intergenic |
CCTTCTTCCTTAACATGATT+AGG | 0.237816 | 7_3:+83729418 | None:intergenic |
CACCATTACCAAAGAGTTCT+TGG | 0.238413 | 7_3:+83729995 | None:intergenic |
GTGGTGGTGGTTGTGGAAGA+TGG | 0.243950 | 7_3:+83729871 | None:intergenic |
TTAGTTTCTGGTACAGTTCT+TGG | 0.259576 | 7_3:+83729197 | None:intergenic |
CTTCTTCCTTAACATGATTA+GGG | 0.273935 | 7_3:+83729419 | None:intergenic |
AGAAACTACTCTTCCATTAA+TGG | 0.274062 | 7_3:-83729946 | Msa1131200:CDS |
ACAGTTTCTTCAGAGTTTAA+TGG | 0.275960 | 7_3:-83729571 | Msa1131200:CDS |
GCAAGACATGCCGTCGTTAC+TGG | 0.280270 | 7_3:-83729702 | Msa1131200:CDS |
TTGGAAGATCAGACCAAGTT+AGG | 0.282710 | 7_3:+83728999 | None:intergenic |
TTGGAGACAACTTCAGTTAC+TGG | 0.287644 | 7_3:-83729055 | Msa1131200:CDS |
TTGTTGATGACCTTAGTTTC+TGG | 0.307492 | 7_3:+83729185 | None:intergenic |
GAAGAAGGCAATAACTTCAT+AGG | 0.324773 | 7_3:-83729403 | Msa1131200:CDS |
TGGTGCAGTGGTGGTGGTGG+TGG | 0.332078 | 7_3:+83729855 | None:intergenic |
TTATACTTATTACTGATATT+GGG | 0.334867 | 7_3:+83728955 | None:intergenic |
CAAAATGGTGGATTTGTACT+TGG | 0.338045 | 7_3:-83729256 | Msa1131200:CDS |
CAGTTACTGGTGGTGAATTA+GGG | 0.346171 | 7_3:-83729042 | Msa1131200:CDS |
CCTTAACATGATTAGGGTTA+GGG | 0.353211 | 7_3:+83729425 | None:intergenic |
CAAACTCAACAATTACAAAA+TGG | 0.354663 | 7_3:-83729271 | Msa1131200:CDS |
GACCAAGTTAGGGTTGGAAT+TGG | 0.358551 | 7_3:+83729010 | None:intergenic |
TCCTTAACATGATTAGGGTT+AGG | 0.359817 | 7_3:+83729424 | None:intergenic |
CCAACACCAACAGTGTTACT+AGG | 0.367483 | 7_3:-83729115 | Msa1131200:CDS |
CATGATTGTTTCTCCAAAAT+GGG | 0.372690 | 7_3:+83729299 | None:intergenic |
CAGAAAACCAACCACATCTA+AGG | 0.374661 | 7_3:-83729801 | Msa1131200:CDS |
TGGTGGTGGTTGTGGAAGAT+GGG | 0.383636 | 7_3:+83729872 | None:intergenic |
TTTCCGACAGCCACCTCCTA+TGG | 0.383757 | 7_3:+83729651 | None:intergenic |
GACGGCATGTCTTGCAGAAA+TGG | 0.400957 | 7_3:+83729710 | None:intergenic |
CACCACAAAGTCAAATCCTC+TGG | 0.406936 | 7_3:-83729504 | Msa1131200:CDS |
GAAGAAGGAGGTTGTGTTGT+TGG | 0.410788 | 7_3:+83729898 | None:intergenic |
CCCTAACCCTAATCATGTTA+AGG | 0.421766 | 7_3:-83729425 | Msa1131200:CDS |
CCCCAGAGGATTTGACTTTG+TGG | 0.425921 | 7_3:+83729502 | None:intergenic |
TGCGGTGGTGGTTGTGGTGA+CGG | 0.433800 | 7_3:+83729828 | None:intergenic |
CTCCAAAATGTTGGATATAG+AGG | 0.436023 | 7_3:+83729072 | None:intergenic |
CAGCCGTTGATTTCGTCAAA+TGG | 0.436916 | 7_3:-83729352 | Msa1131200:CDS |
TCCATTAATGGAGGAGTTGG+AGG | 0.440892 | 7_3:-83729934 | Msa1131200:CDS |
CCTAATCATGTTAAGGAAGA+AGG | 0.447706 | 7_3:-83729418 | Msa1131200:CDS |
GTGGTTGTGGTGACGGTGGT+TGG | 0.448495 | 7_3:+83729835 | None:intergenic |
GTGGAAGATGGGCGTGAAGA+AGG | 0.452402 | 7_3:+83729883 | None:intergenic |
GGACAAAAGGAGGTGCTTTG+AGG | 0.473653 | 7_3:-83729681 | Msa1131200:CDS |
ATCCAATTCCAACCCTAACT+TGG | 0.473948 | 7_3:-83729012 | Msa1131200:CDS |
GGTGGTTGGTGCAGTGGTGG+TGG | 0.475125 | 7_3:+83729849 | None:intergenic |
AAGATGATCCAAGAACTCTT+TGG | 0.477513 | 7_3:-83730003 | Msa1131200:CDS |
TGCCGTCGTTACTGGACAAA+AGG | 0.477938 | 7_3:-83729694 | Msa1131200:CDS |
AAAATGGTGGATTTGTACTT+GGG | 0.478306 | 7_3:-83729255 | Msa1131200:CDS |
ATTTCGTCAAATGGTTATGA+TGG | 0.478918 | 7_3:-83729343 | Msa1131200:CDS |
TGATGATGCGGTGGTGGTTG+TGG | 0.481556 | 7_3:+83729822 | None:intergenic |
TCTTCCATTAATGGAGGAGT+TGG | 0.482425 | 7_3:-83729937 | Msa1131200:CDS |
GGTTGGTGCAGTGGTGGTGG+TGG | 0.494544 | 7_3:+83729852 | None:intergenic |
AAGAACTGTACCAGAAACTA+AGG | 0.497513 | 7_3:-83729195 | Msa1131200:CDS |
TGGAAGATCAGACCAAGTTA+GGG | 0.500768 | 7_3:+83729000 | None:intergenic |
CTGGTGGTGAATTAGGGTAC+TGG | 0.503929 | 7_3:-83729036 | Msa1131200:CDS |
TTGGGTTTGAATTGCACCAT+TGG | 0.506743 | 7_3:+83728973 | None:intergenic |
TCAACAACATCATCATCATC+AGG | 0.508236 | 7_3:-83729169 | Msa1131200:CDS |
GTGTTTGATGAGTCACATCT+TGG | 0.511366 | 7_3:+83729775 | None:intergenic |
ATCCAAGAACTCTTTGGTAA+TGG | 0.516650 | 7_3:-83729997 | Msa1131200:CDS |
TTGGACACCTTAGATGTGGT+TGG | 0.518935 | 7_3:+83729794 | None:intergenic |
GACGGTGGTTGGTGCAGTGG+TGG | 0.519460 | 7_3:+83729846 | None:intergenic |
TGAAGTTGTCTCCAAAATGT+TGG | 0.525052 | 7_3:+83729063 | None:intergenic |
TGAATTGCACCATTGGTAGT+TGG | 0.526899 | 7_3:+83728980 | None:intergenic |
ACCACAAAGTCAAATCCTCT+GGG | 0.532491 | 7_3:-83729503 | Msa1131200:CDS |
AAGAAGGCAATAACTTCATA+GGG | 0.534937 | 7_3:-83729402 | Msa1131200:CDS |
TTCCGACAGCCACCTCCTAT+GGG | 0.538444 | 7_3:+83729652 | None:intergenic |
CCTAGTAACACTGTTGGTGT+TGG | 0.540794 | 7_3:+83729115 | None:intergenic |
GGAAGGTCAACAAGTGGTCA+AGG | 0.546021 | 7_3:-83729550 | Msa1131200:CDS |
GTTTCTTTCACTTGAAGTGA+GGG | 0.555832 | 7_3:+83729963 | None:intergenic |
GGTGACGGTGGTTGGTGCAG+TGG | 0.560684 | 7_3:+83729843 | None:intergenic |
TTGAGGAACGTTCCCATAGG+AGG | 0.560915 | 7_3:-83729664 | Msa1131200:CDS |
CAGAGGATTTGACTTTGTGG+TGG | 0.563970 | 7_3:+83729505 | None:intergenic |
AGGAACGTTCCCATAGGAGG+TGG | 0.565496 | 7_3:-83729661 | Msa1131200:CDS |
AGATCAGACCAAGTTAGGGT+TGG | 0.572219 | 7_3:+83729004 | None:intergenic |
TCAAATGGTTATGATGGTGT+TGG | 0.575378 | 7_3:-83729337 | Msa1131200:CDS |
AGTTTCTTTCACTTGAAGTG+AGG | 0.580149 | 7_3:+83729962 | None:intergenic |
CAACACCAACAGTGTTACTA+GGG | 0.580552 | 7_3:-83729114 | Msa1131200:CDS |
AAATGGTGGATTTGTACTTG+GGG | 0.583095 | 7_3:-83729254 | Msa1131200:CDS |
TTCCCATAGGAGGTGGCTGT+CGG | 0.589355 | 7_3:-83729654 | Msa1131200:CDS |
ACTCAACAATTACAAAATGG+TGG | 0.590751 | 7_3:-83729268 | Msa1131200:CDS |
TCTGATCTTCCAACTACCAA+TGG | 0.595789 | 7_3:-83728989 | Msa1131200:CDS |
TTTCTTCAGAGTTTAATGGA+AGG | 0.603721 | 7_3:-83729567 | Msa1131200:CDS |
AACTCATCATGTGAGAAACA+TGG | 0.610751 | 7_3:+83729377 | None:intergenic |
GAAGGTCAACAAGTGGTCAA+GGG | 0.612566 | 7_3:-83729549 | Msa1131200:CDS |
CGTCGTTACTGGACAAAAGG+AGG | 0.618133 | 7_3:-83729691 | Msa1131200:CDS |
GCTTTGAGGAACGTTCCCAT+AGG | 0.619952 | 7_3:-83729667 | Msa1131200:CDS |
GAAGATGGGCGTGAAGAAGG+AGG | 0.621383 | 7_3:+83729886 | None:intergenic |
CATCTTGGACACCTTAGATG+TGG | 0.628308 | 7_3:+83729790 | None:intergenic |
AACTACTCTTCCATTAATGG+AGG | 0.630490 | 7_3:-83729943 | Msa1131200:CDS |
TAACCATTTGACGAAATCAA+CGG | 0.644257 | 7_3:+83729349 | None:intergenic |
GAGACAACTTCAGTTACTGG+TGG | 0.647714 | 7_3:-83729052 | Msa1131200:CDS |
CATGTCTTGCAGAAATGGCG+AGG | 0.648175 | 7_3:+83729715 | None:intergenic |
CATCACCATCATCAAAACAG+TGG | 0.654071 | 7_3:-83729223 | Msa1131200:CDS |
ACTCATCATGTGAGAAACAT+GGG | 0.656250 | 7_3:+83729378 | None:intergenic |
GGTGGTGGTTGTGGTGACGG+TGG | 0.663797 | 7_3:+83729831 | None:intergenic |
TTTAATGGAAGGTCAACAAG+TGG | 0.666542 | 7_3:-83729556 | Msa1131200:CDS |
AACAGTGTTACTAGGGAACG+TGG | 0.681785 | 7_3:-83729107 | Msa1131200:CDS |
ACGTTCCCTAGTAACACTGT+TGG | 0.689714 | 7_3:+83729109 | None:intergenic |
TATCAACGCCTCAAATAGTG+CGG | 0.693402 | 7_3:-83729620 | Msa1131200:CDS |
AGAAATGGCGAGGCTGAGTG+AGG | 0.701300 | 7_3:+83729725 | None:intergenic |
CCACAAAGTCAAATCCTCTG+GGG | 0.739195 | 7_3:-83729502 | Msa1131200:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GAAAGTATATGAGAATTTTG+AGG | + | chr7_3:83729492-83729511 | None:intergenic | 25.0% |
! | CAAACTCAACAATTACAAAA+TGG | - | chr7_3:83729693-83729712 | Msa1131200:CDS | 25.0% |
!!! | GAAAGTATATGAGAATTTTG+AGG | + | chr7_3:83729492-83729511 | None:intergenic | 25.0% |
! | CAAACTCAACAATTACAAAA+TGG | - | chr7_3:83729693-83729712 | Msa1131200:CDS | 25.0% |
AGAAACTACTCTTCCATTAA+TGG | - | chr7_3:83729018-83729037 | Msa1131200:CDS | 30.0% | |
ACAGTTTCTTCAGAGTTTAA+TGG | - | chr7_3:83729393-83729412 | Msa1131200:CDS | 30.0% | |
TTTCTTCAGAGTTTAATGGA+AGG | - | chr7_3:83729397-83729416 | Msa1131200:CDS | 30.0% | |
CTTCTTCCTTAACATGATTA+GGG | + | chr7_3:83729548-83729567 | None:intergenic | 30.0% | |
AAGAAGGCAATAACTTCATA+GGG | - | chr7_3:83729562-83729581 | Msa1131200:CDS | 30.0% | |
TAACCATTTGACGAAATCAA+CGG | + | chr7_3:83729618-83729637 | None:intergenic | 30.0% | |
ATTTCGTCAAATGGTTATGA+TGG | - | chr7_3:83729621-83729640 | Msa1131200:CDS | 30.0% | |
! | ATGTTTTATGCAACCCATTT+TGG | - | chr7_3:83729652-83729671 | Msa1131200:CDS | 30.0% |
! | CATGATTGTTTCTCCAAAAT+GGG | + | chr7_3:83729668-83729687 | None:intergenic | 30.0% |
! | TCATGATTGTTTCTCCAAAA+TGG | + | chr7_3:83729669-83729688 | None:intergenic | 30.0% |
ACTCAACAATTACAAAATGG+TGG | - | chr7_3:83729696-83729715 | Msa1131200:CDS | 30.0% | |
!! | AAAATGGTGGATTTGTACTT+GGG | - | chr7_3:83729709-83729728 | Msa1131200:CDS | 30.0% |
! | TTCCTCTATATCCAACATTT+TGG | - | chr7_3:83729890-83729909 | Msa1131200:CDS | 30.0% |
AGAAACTACTCTTCCATTAA+TGG | - | chr7_3:83729018-83729037 | Msa1131200:CDS | 30.0% | |
ACAGTTTCTTCAGAGTTTAA+TGG | - | chr7_3:83729393-83729412 | Msa1131200:CDS | 30.0% | |
TTTCTTCAGAGTTTAATGGA+AGG | - | chr7_3:83729397-83729416 | Msa1131200:CDS | 30.0% | |
CTTCTTCCTTAACATGATTA+GGG | + | chr7_3:83729548-83729567 | None:intergenic | 30.0% | |
AAGAAGGCAATAACTTCATA+GGG | - | chr7_3:83729562-83729581 | Msa1131200:CDS | 30.0% | |
TAACCATTTGACGAAATCAA+CGG | + | chr7_3:83729618-83729637 | None:intergenic | 30.0% | |
ATTTCGTCAAATGGTTATGA+TGG | - | chr7_3:83729621-83729640 | Msa1131200:CDS | 30.0% | |
! | ATGTTTTATGCAACCCATTT+TGG | - | chr7_3:83729652-83729671 | Msa1131200:CDS | 30.0% |
! | CATGATTGTTTCTCCAAAAT+GGG | + | chr7_3:83729668-83729687 | None:intergenic | 30.0% |
! | TCATGATTGTTTCTCCAAAA+TGG | + | chr7_3:83729669-83729688 | None:intergenic | 30.0% |
ACTCAACAATTACAAAATGG+TGG | - | chr7_3:83729696-83729715 | Msa1131200:CDS | 30.0% | |
!! | AAAATGGTGGATTTGTACTT+GGG | - | chr7_3:83729709-83729728 | Msa1131200:CDS | 30.0% |
! | TTCCTCTATATCCAACATTT+TGG | - | chr7_3:83729890-83729909 | Msa1131200:CDS | 30.0% |
ATCCAAGAACTCTTTGGTAA+TGG | - | chr7_3:83728967-83728986 | Msa1131200:CDS | 35.0% | |
GTTTCTTTCACTTGAAGTGA+GGG | + | chr7_3:83729004-83729023 | None:intergenic | 35.0% | |
AGTTTCTTTCACTTGAAGTG+AGG | + | chr7_3:83729005-83729024 | None:intergenic | 35.0% | |
AACTACTCTTCCATTAATGG+AGG | - | chr7_3:83729021-83729040 | Msa1131200:CDS | 35.0% | |
TTTAATGGAAGGTCAACAAG+TGG | - | chr7_3:83729408-83729427 | Msa1131200:CDS | 35.0% | |
CCTTAACATGATTAGGGTTA+GGG | + | chr7_3:83729542-83729561 | None:intergenic | 35.0% | |
TCCTTAACATGATTAGGGTT+AGG | + | chr7_3:83729543-83729562 | None:intergenic | 35.0% | |
CCTTCTTCCTTAACATGATT+AGG | + | chr7_3:83729549-83729568 | None:intergenic | 35.0% | |
CCTAATCATGTTAAGGAAGA+AGG | - | chr7_3:83729546-83729565 | Msa1131200:CDS | 35.0% | |
GAAGAAGGCAATAACTTCAT+AGG | - | chr7_3:83729561-83729580 | Msa1131200:CDS | 35.0% | |
ACTCATCATGTGAGAAACAT+GGG | + | chr7_3:83729589-83729608 | None:intergenic | 35.0% | |
AACTCATCATGTGAGAAACA+TGG | + | chr7_3:83729590-83729609 | None:intergenic | 35.0% | |
! | TCAAATGGTTATGATGGTGT+TGG | - | chr7_3:83729627-83729646 | Msa1131200:CDS | 35.0% |
!! | CAAAATGGTGGATTTGTACT+TGG | - | chr7_3:83729708-83729727 | Msa1131200:CDS | 35.0% |
!! | AAATGGTGGATTTGTACTTG+GGG | - | chr7_3:83729710-83729729 | Msa1131200:CDS | 35.0% |
!! | TTAGTTTCTGGTACAGTTCT+TGG | + | chr7_3:83729770-83729789 | None:intergenic | 35.0% |
AAGAACTGTACCAGAAACTA+AGG | - | chr7_3:83729769-83729788 | Msa1131200:CDS | 35.0% | |
!! | TTGTTGATGACCTTAGTTTC+TGG | + | chr7_3:83729782-83729801 | None:intergenic | 35.0% |
TCAACAACATCATCATCATC+AGG | - | chr7_3:83729795-83729814 | Msa1131200:CDS | 35.0% | |
CTCCAAAATGTTGGATATAG+AGG | + | chr7_3:83729895-83729914 | None:intergenic | 35.0% | |
TGAAGTTGTCTCCAAAATGT+TGG | + | chr7_3:83729904-83729923 | None:intergenic | 35.0% | |
ATCCAAGAACTCTTTGGTAA+TGG | - | chr7_3:83728967-83728986 | Msa1131200:CDS | 35.0% | |
GTTTCTTTCACTTGAAGTGA+GGG | + | chr7_3:83729004-83729023 | None:intergenic | 35.0% | |
AGTTTCTTTCACTTGAAGTG+AGG | + | chr7_3:83729005-83729024 | None:intergenic | 35.0% | |
AACTACTCTTCCATTAATGG+AGG | - | chr7_3:83729021-83729040 | Msa1131200:CDS | 35.0% | |
TTTAATGGAAGGTCAACAAG+TGG | - | chr7_3:83729408-83729427 | Msa1131200:CDS | 35.0% | |
CCTTAACATGATTAGGGTTA+GGG | + | chr7_3:83729542-83729561 | None:intergenic | 35.0% | |
TCCTTAACATGATTAGGGTT+AGG | + | chr7_3:83729543-83729562 | None:intergenic | 35.0% | |
CCTTCTTCCTTAACATGATT+AGG | + | chr7_3:83729549-83729568 | None:intergenic | 35.0% | |
CCTAATCATGTTAAGGAAGA+AGG | - | chr7_3:83729546-83729565 | Msa1131200:CDS | 35.0% | |
GAAGAAGGCAATAACTTCAT+AGG | - | chr7_3:83729561-83729580 | Msa1131200:CDS | 35.0% | |
ACTCATCATGTGAGAAACAT+GGG | + | chr7_3:83729589-83729608 | None:intergenic | 35.0% | |
AACTCATCATGTGAGAAACA+TGG | + | chr7_3:83729590-83729609 | None:intergenic | 35.0% | |
! | TCAAATGGTTATGATGGTGT+TGG | - | chr7_3:83729627-83729646 | Msa1131200:CDS | 35.0% |
!! | CAAAATGGTGGATTTGTACT+TGG | - | chr7_3:83729708-83729727 | Msa1131200:CDS | 35.0% |
!! | AAATGGTGGATTTGTACTTG+GGG | - | chr7_3:83729710-83729729 | Msa1131200:CDS | 35.0% |
!! | TTAGTTTCTGGTACAGTTCT+TGG | + | chr7_3:83729770-83729789 | None:intergenic | 35.0% |
AAGAACTGTACCAGAAACTA+AGG | - | chr7_3:83729769-83729788 | Msa1131200:CDS | 35.0% | |
!! | TTGTTGATGACCTTAGTTTC+TGG | + | chr7_3:83729782-83729801 | None:intergenic | 35.0% |
TCAACAACATCATCATCATC+AGG | - | chr7_3:83729795-83729814 | Msa1131200:CDS | 35.0% | |
CTCCAAAATGTTGGATATAG+AGG | + | chr7_3:83729895-83729914 | None:intergenic | 35.0% | |
TGAAGTTGTCTCCAAAATGT+TGG | + | chr7_3:83729904-83729923 | None:intergenic | 35.0% | |
CACCATTACCAAAGAGTTCT+TGG | + | chr7_3:83728972-83728991 | None:intergenic | 40.0% | |
TCTTCCATTAATGGAGGAGT+TGG | - | chr7_3:83729027-83729046 | Msa1131200:CDS | 40.0% | |
!!! | TGGTTGGTTTTCTGATGATG+CGG | + | chr7_3:83729157-83729176 | None:intergenic | 40.0% |
CAGAAAACCAACCACATCTA+AGG | - | chr7_3:83729163-83729182 | Msa1131200:CDS | 40.0% | |
GTGTTTGATGAGTCACATCT+TGG | + | chr7_3:83729192-83729211 | None:intergenic | 40.0% | |
TATCAACGCCTCAAATAGTG+CGG | - | chr7_3:83729344-83729363 | Msa1131200:CDS | 40.0% | |
!! | TGTTTTTGCCGCACTATTTG+AGG | + | chr7_3:83729355-83729374 | None:intergenic | 40.0% |
ACCACAAAGTCAAATCCTCT+GGG | - | chr7_3:83729461-83729480 | Msa1131200:CDS | 40.0% | |
! | CATGATTAGGGTTAGGGTTT+TGG | + | chr7_3:83729536-83729555 | None:intergenic | 40.0% |
CCCTAACCCTAATCATGTTA+AGG | - | chr7_3:83729539-83729558 | Msa1131200:CDS | 40.0% | |
CATCACCATCATCAAAACAG+TGG | - | chr7_3:83729741-83729760 | Msa1131200:CDS | 40.0% | |
!!! | GGATTCCACTGTTTTGATGA+TGG | + | chr7_3:83729749-83729768 | None:intergenic | 40.0% |
! | CAACACCAACAGTGTTACTA+GGG | - | chr7_3:83729850-83729869 | Msa1131200:CDS | 40.0% |
TTGGAGACAACTTCAGTTAC+TGG | - | chr7_3:83729909-83729928 | Msa1131200:CDS | 40.0% | |
! | TCAGTTACTGGTGGTGAATT+AGG | - | chr7_3:83729921-83729940 | Msa1131200:CDS | 40.0% |
! | CAGTTACTGGTGGTGAATTA+GGG | - | chr7_3:83729922-83729941 | Msa1131200:CDS | 40.0% |
ATCCAATTCCAACCCTAACT+TGG | - | chr7_3:83729952-83729971 | Msa1131200:CDS | 40.0% | |
TGGAAGATCAGACCAAGTTA+GGG | + | chr7_3:83729967-83729986 | None:intergenic | 40.0% | |
TTGGAAGATCAGACCAAGTT+AGG | + | chr7_3:83729968-83729987 | None:intergenic | 40.0% | |
TCTGATCTTCCAACTACCAA+TGG | - | chr7_3:83729975-83729994 | Msa1131200:CDS | 40.0% | |
! | TGAATTGCACCATTGGTAGT+TGG | + | chr7_3:83729987-83730006 | None:intergenic | 40.0% |
TTGGGTTTGAATTGCACCAT+TGG | + | chr7_3:83729994-83730013 | None:intergenic | 40.0% | |
CACCATTACCAAAGAGTTCT+TGG | + | chr7_3:83728972-83728991 | None:intergenic | 40.0% | |
TCTTCCATTAATGGAGGAGT+TGG | - | chr7_3:83729027-83729046 | Msa1131200:CDS | 40.0% | |
!!! | TGGTTGGTTTTCTGATGATG+CGG | + | chr7_3:83729157-83729176 | None:intergenic | 40.0% |
CAGAAAACCAACCACATCTA+AGG | - | chr7_3:83729163-83729182 | Msa1131200:CDS | 40.0% | |
GTGTTTGATGAGTCACATCT+TGG | + | chr7_3:83729192-83729211 | None:intergenic | 40.0% | |
TATCAACGCCTCAAATAGTG+CGG | - | chr7_3:83729344-83729363 | Msa1131200:CDS | 40.0% | |
!! | TGTTTTTGCCGCACTATTTG+AGG | + | chr7_3:83729355-83729374 | None:intergenic | 40.0% |
ACCACAAAGTCAAATCCTCT+GGG | - | chr7_3:83729461-83729480 | Msa1131200:CDS | 40.0% | |
! | CATGATTAGGGTTAGGGTTT+TGG | + | chr7_3:83729536-83729555 | None:intergenic | 40.0% |
CCCTAACCCTAATCATGTTA+AGG | - | chr7_3:83729539-83729558 | Msa1131200:CDS | 40.0% | |
CATCACCATCATCAAAACAG+TGG | - | chr7_3:83729741-83729760 | Msa1131200:CDS | 40.0% | |
!!! | GGATTCCACTGTTTTGATGA+TGG | + | chr7_3:83729749-83729768 | None:intergenic | 40.0% |
! | CAACACCAACAGTGTTACTA+GGG | - | chr7_3:83729850-83729869 | Msa1131200:CDS | 40.0% |
TTGGAGACAACTTCAGTTAC+TGG | - | chr7_3:83729909-83729928 | Msa1131200:CDS | 40.0% | |
! | TCAGTTACTGGTGGTGAATT+AGG | - | chr7_3:83729921-83729940 | Msa1131200:CDS | 40.0% |
! | CAGTTACTGGTGGTGAATTA+GGG | - | chr7_3:83729922-83729941 | Msa1131200:CDS | 40.0% |
ATCCAATTCCAACCCTAACT+TGG | - | chr7_3:83729952-83729971 | Msa1131200:CDS | 40.0% | |
TGGAAGATCAGACCAAGTTA+GGG | + | chr7_3:83729967-83729986 | None:intergenic | 40.0% | |
TTGGAAGATCAGACCAAGTT+AGG | + | chr7_3:83729968-83729987 | None:intergenic | 40.0% | |
TCTGATCTTCCAACTACCAA+TGG | - | chr7_3:83729975-83729994 | Msa1131200:CDS | 40.0% | |
! | TGAATTGCACCATTGGTAGT+TGG | + | chr7_3:83729987-83730006 | None:intergenic | 40.0% |
TTGGGTTTGAATTGCACCAT+TGG | + | chr7_3:83729994-83730013 | None:intergenic | 40.0% | |
TCCATTAATGGAGGAGTTGG+AGG | - | chr7_3:83729030-83729049 | Msa1131200:CDS | 45.0% | |
TCCTCCAACTCCTCCATTAA+TGG | + | chr7_3:83729034-83729053 | None:intergenic | 45.0% | |
GAAGAAGGAGGTTGTGTTGT+TGG | + | chr7_3:83729069-83729088 | None:intergenic | 45.0% | |
!! | TTGGTTTTCTGATGATGCGG+TGG | + | chr7_3:83729154-83729173 | None:intergenic | 45.0% |
TTGGACACCTTAGATGTGGT+TGG | + | chr7_3:83729173-83729192 | None:intergenic | 45.0% | |
CATCTTGGACACCTTAGATG+TGG | + | chr7_3:83729177-83729196 | None:intergenic | 45.0% | |
! | CTCCTTTTGTCCAGTAACGA+CGG | + | chr7_3:83729275-83729294 | None:intergenic | 45.0% |
GAAGGTCAACAAGTGGTCAA+GGG | - | chr7_3:83729415-83729434 | Msa1131200:CDS | 45.0% | |
! | CAGAGGATTTGACTTTGTGG+TGG | + | chr7_3:83729462-83729481 | None:intergenic | 45.0% |
CACCACAAAGTCAAATCCTC+TGG | - | chr7_3:83729460-83729479 | Msa1131200:CDS | 45.0% | |
CCACAAAGTCAAATCCTCTG+GGG | - | chr7_3:83729462-83729481 | Msa1131200:CDS | 45.0% | |
!! | AATTTTGAGGAGAACCCCAG+AGG | + | chr7_3:83729479-83729498 | None:intergenic | 45.0% |
!! | CAGCCGTTGATTTCGTCAAA+TGG | - | chr7_3:83729612-83729631 | Msa1131200:CDS | 45.0% |
CCTAGTAACACTGTTGGTGT+TGG | + | chr7_3:83729852-83729871 | None:intergenic | 45.0% | |
! | CCAACACCAACAGTGTTACT+AGG | - | chr7_3:83729849-83729868 | Msa1131200:CDS | 45.0% |
ACGTTCCCTAGTAACACTGT+TGG | + | chr7_3:83729858-83729877 | None:intergenic | 45.0% | |
! | AACAGTGTTACTAGGGAACG+TGG | - | chr7_3:83729857-83729876 | Msa1131200:CDS | 45.0% |
GAGACAACTTCAGTTACTGG+TGG | - | chr7_3:83729912-83729931 | Msa1131200:CDS | 45.0% | |
GACCAAGTTAGGGTTGGAAT+TGG | + | chr7_3:83729957-83729976 | None:intergenic | 45.0% | |
AGATCAGACCAAGTTAGGGT+TGG | + | chr7_3:83729963-83729982 | None:intergenic | 45.0% | |
TCCATTAATGGAGGAGTTGG+AGG | - | chr7_3:83729030-83729049 | Msa1131200:CDS | 45.0% | |
TCCTCCAACTCCTCCATTAA+TGG | + | chr7_3:83729034-83729053 | None:intergenic | 45.0% | |
GAAGAAGGAGGTTGTGTTGT+TGG | + | chr7_3:83729069-83729088 | None:intergenic | 45.0% | |
!! | TTGGTTTTCTGATGATGCGG+TGG | + | chr7_3:83729154-83729173 | None:intergenic | 45.0% |
TTGGACACCTTAGATGTGGT+TGG | + | chr7_3:83729173-83729192 | None:intergenic | 45.0% | |
CATCTTGGACACCTTAGATG+TGG | + | chr7_3:83729177-83729196 | None:intergenic | 45.0% | |
! | CTCCTTTTGTCCAGTAACGA+CGG | + | chr7_3:83729275-83729294 | None:intergenic | 45.0% |
GAAGGTCAACAAGTGGTCAA+GGG | - | chr7_3:83729415-83729434 | Msa1131200:CDS | 45.0% | |
! | CAGAGGATTTGACTTTGTGG+TGG | + | chr7_3:83729462-83729481 | None:intergenic | 45.0% |
CACCACAAAGTCAAATCCTC+TGG | - | chr7_3:83729460-83729479 | Msa1131200:CDS | 45.0% | |
CCACAAAGTCAAATCCTCTG+GGG | - | chr7_3:83729462-83729481 | Msa1131200:CDS | 45.0% | |
!! | AATTTTGAGGAGAACCCCAG+AGG | + | chr7_3:83729479-83729498 | None:intergenic | 45.0% |
!! | CAGCCGTTGATTTCGTCAAA+TGG | - | chr7_3:83729612-83729631 | Msa1131200:CDS | 45.0% |
CCTAGTAACACTGTTGGTGT+TGG | + | chr7_3:83729852-83729871 | None:intergenic | 45.0% | |
! | CCAACACCAACAGTGTTACT+AGG | - | chr7_3:83729849-83729868 | Msa1131200:CDS | 45.0% |
ACGTTCCCTAGTAACACTGT+TGG | + | chr7_3:83729858-83729877 | None:intergenic | 45.0% | |
! | AACAGTGTTACTAGGGAACG+TGG | - | chr7_3:83729857-83729876 | Msa1131200:CDS | 45.0% |
GAGACAACTTCAGTTACTGG+TGG | - | chr7_3:83729912-83729931 | Msa1131200:CDS | 45.0% | |
GACCAAGTTAGGGTTGGAAT+TGG | + | chr7_3:83729957-83729976 | None:intergenic | 45.0% | |
AGATCAGACCAAGTTAGGGT+TGG | + | chr7_3:83729963-83729982 | None:intergenic | 45.0% | |
!! | TGGTGGTGGTTGTGGAAGAT+GGG | + | chr7_3:83729095-83729114 | None:intergenic | 50.0% |
!! | GTTTTCTGATGATGCGGTGG+TGG | + | chr7_3:83729151-83729170 | None:intergenic | 50.0% |
CATGTCTTGCAGAAATGGCG+AGG | + | chr7_3:83729252-83729271 | None:intergenic | 50.0% | |
GACGGCATGTCTTGCAGAAA+TGG | + | chr7_3:83729257-83729276 | None:intergenic | 50.0% | |
TGCCGTCGTTACTGGACAAA+AGG | - | chr7_3:83729270-83729289 | Msa1131200:CDS | 50.0% | |
CGTCGTTACTGGACAAAAGG+AGG | - | chr7_3:83729273-83729292 | Msa1131200:CDS | 50.0% | |
!! | GGACAAAAGGAGGTGCTTTG+AGG | - | chr7_3:83729283-83729302 | Msa1131200:CDS | 50.0% |
!! | GCTTTGAGGAACGTTCCCAT+AGG | - | chr7_3:83729297-83729316 | Msa1131200:CDS | 50.0% |
TTGAGGAACGTTCCCATAGG+AGG | - | chr7_3:83729300-83729319 | Msa1131200:CDS | 50.0% | |
GGAAGGTCAACAAGTGGTCA+AGG | - | chr7_3:83729414-83729433 | Msa1131200:CDS | 50.0% | |
! | CCCCAGAGGATTTGACTTTG+TGG | + | chr7_3:83729465-83729484 | None:intergenic | 50.0% |
! | CTGGTGGTGAATTAGGGTAC+TGG | - | chr7_3:83729928-83729947 | Msa1131200:CDS | 50.0% |
!! | TGGTGGTGGTTGTGGAAGAT+GGG | + | chr7_3:83729095-83729114 | None:intergenic | 50.0% |
!! | GTTTTCTGATGATGCGGTGG+TGG | + | chr7_3:83729151-83729170 | None:intergenic | 50.0% |
CATGTCTTGCAGAAATGGCG+AGG | + | chr7_3:83729252-83729271 | None:intergenic | 50.0% | |
GACGGCATGTCTTGCAGAAA+TGG | + | chr7_3:83729257-83729276 | None:intergenic | 50.0% | |
TGCCGTCGTTACTGGACAAA+AGG | - | chr7_3:83729270-83729289 | Msa1131200:CDS | 50.0% | |
CGTCGTTACTGGACAAAAGG+AGG | - | chr7_3:83729273-83729292 | Msa1131200:CDS | 50.0% | |
!! | GGACAAAAGGAGGTGCTTTG+AGG | - | chr7_3:83729283-83729302 | Msa1131200:CDS | 50.0% |
!! | GCTTTGAGGAACGTTCCCAT+AGG | - | chr7_3:83729297-83729316 | Msa1131200:CDS | 50.0% |
TTGAGGAACGTTCCCATAGG+AGG | - | chr7_3:83729300-83729319 | Msa1131200:CDS | 50.0% | |
GGAAGGTCAACAAGTGGTCA+AGG | - | chr7_3:83729414-83729433 | Msa1131200:CDS | 50.0% | |
! | CCCCAGAGGATTTGACTTTG+TGG | + | chr7_3:83729465-83729484 | None:intergenic | 50.0% |
! | CTGGTGGTGAATTAGGGTAC+TGG | - | chr7_3:83729928-83729947 | Msa1131200:CDS | 50.0% |
GAAGATGGGCGTGAAGAAGG+AGG | + | chr7_3:83729081-83729100 | None:intergenic | 55.0% | |
GTGGAAGATGGGCGTGAAGA+AGG | + | chr7_3:83729084-83729103 | None:intergenic | 55.0% | |
!! | GTGGTGGTGGTTGTGGAAGA+TGG | + | chr7_3:83729096-83729115 | None:intergenic | 55.0% |
! | TGATGATGCGGTGGTGGTTG+TGG | + | chr7_3:83729145-83729164 | None:intergenic | 55.0% |
AGAAATGGCGAGGCTGAGTG+AGG | + | chr7_3:83729242-83729261 | None:intergenic | 55.0% | |
GCAAGACATGCCGTCGTTAC+TGG | - | chr7_3:83729262-83729281 | Msa1131200:CDS | 55.0% | |
AGGAACGTTCCCATAGGAGG+TGG | - | chr7_3:83729303-83729322 | Msa1131200:CDS | 55.0% | |
TTCCCATAGGAGGTGGCTGT+CGG | - | chr7_3:83729310-83729329 | Msa1131200:CDS | 55.0% | |
TTCCGACAGCCACCTCCTAT+GGG | + | chr7_3:83729315-83729334 | None:intergenic | 55.0% | |
TTTCCGACAGCCACCTCCTA+TGG | + | chr7_3:83729316-83729335 | None:intergenic | 55.0% | |
GAAGATGGGCGTGAAGAAGG+AGG | + | chr7_3:83729081-83729100 | None:intergenic | 55.0% | |
GTGGAAGATGGGCGTGAAGA+AGG | + | chr7_3:83729084-83729103 | None:intergenic | 55.0% | |
!! | GTGGTGGTGGTTGTGGAAGA+TGG | + | chr7_3:83729096-83729115 | None:intergenic | 55.0% |
! | TGATGATGCGGTGGTGGTTG+TGG | + | chr7_3:83729145-83729164 | None:intergenic | 55.0% |
AGAAATGGCGAGGCTGAGTG+AGG | + | chr7_3:83729242-83729261 | None:intergenic | 55.0% | |
GCAAGACATGCCGTCGTTAC+TGG | - | chr7_3:83729262-83729281 | Msa1131200:CDS | 55.0% | |
AGGAACGTTCCCATAGGAGG+TGG | - | chr7_3:83729303-83729322 | Msa1131200:CDS | 55.0% | |
TTCCCATAGGAGGTGGCTGT+CGG | - | chr7_3:83729310-83729329 | Msa1131200:CDS | 55.0% | |
TTCCGACAGCCACCTCCTAT+GGG | + | chr7_3:83729315-83729334 | None:intergenic | 55.0% | |
TTTCCGACAGCCACCTCCTA+TGG | + | chr7_3:83729316-83729335 | None:intergenic | 55.0% | |
!! | GTGGTTGTGGTGACGGTGGT+TGG | + | chr7_3:83729132-83729151 | None:intergenic | 60.0% |
! | TGCGGTGGTGGTTGTGGTGA+CGG | + | chr7_3:83729139-83729158 | None:intergenic | 60.0% |
!! | GTGGTTGTGGTGACGGTGGT+TGG | + | chr7_3:83729132-83729151 | None:intergenic | 60.0% |
! | TGCGGTGGTGGTTGTGGTGA+CGG | + | chr7_3:83729139-83729158 | None:intergenic | 60.0% |
!! | GGTGGTGGTGGTGGTGGTTG+TGG | + | chr7_3:83729103-83729122 | None:intergenic | 65.0% |
!! | TGCAGTGGTGGTGGTGGTGG+TGG | + | chr7_3:83729109-83729128 | None:intergenic | 65.0% |
!! | TGGTGCAGTGGTGGTGGTGG+TGG | + | chr7_3:83729112-83729131 | None:intergenic | 65.0% |
!! | GGTTGGTGCAGTGGTGGTGG+TGG | + | chr7_3:83729115-83729134 | None:intergenic | 65.0% |
! | GGTGGTTGGTGCAGTGGTGG+TGG | + | chr7_3:83729118-83729137 | None:intergenic | 65.0% |
! | GACGGTGGTTGGTGCAGTGG+TGG | + | chr7_3:83729121-83729140 | None:intergenic | 65.0% |
! | GGTGACGGTGGTTGGTGCAG+TGG | + | chr7_3:83729124-83729143 | None:intergenic | 65.0% |
!! | GGTGGTGGTTGTGGTGACGG+TGG | + | chr7_3:83729136-83729155 | None:intergenic | 65.0% |
!! | GGTGGTGGTGGTGGTGGTTG+TGG | + | chr7_3:83729103-83729122 | None:intergenic | 65.0% |
!! | TGCAGTGGTGGTGGTGGTGG+TGG | + | chr7_3:83729109-83729128 | None:intergenic | 65.0% |
!! | TGGTGCAGTGGTGGTGGTGG+TGG | + | chr7_3:83729112-83729131 | None:intergenic | 65.0% |
!! | GGTTGGTGCAGTGGTGGTGG+TGG | + | chr7_3:83729115-83729134 | None:intergenic | 65.0% |
! | GGTGGTTGGTGCAGTGGTGG+TGG | + | chr7_3:83729118-83729137 | None:intergenic | 65.0% |
! | GACGGTGGTTGGTGCAGTGG+TGG | + | chr7_3:83729121-83729140 | None:intergenic | 65.0% |
! | GGTGACGGTGGTTGGTGCAG+TGG | + | chr7_3:83729124-83729143 | None:intergenic | 65.0% |
!! | GGTGGTGGTTGTGGTGACGG+TGG | + | chr7_3:83729136-83729155 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 83728964 | 83730022 | 83728964 | ID=Msa1131200;Name=Msa1131200 |
chr7_3 | mRNA | 83728964 | 83730022 | 83728964 | ID=Msa1131200-mRNA-1;Parent=Msa1131200;Name=Msa1131200-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|352 |
chr7_3 | exon | 83728964 | 83730022 | 83728964 | ID=Msa1131200-mRNA-1:exon:24856;Parent=Msa1131200-mRNA-1 |
chr7_3 | CDS | 83728964 | 83730022 | 83728964 | ID=Msa1131200-mRNA-1:cds;Parent=Msa1131200-mRNA-1 |
Gene Sequence |
Protein sequence |