Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136400 | XP_013447550.1 | 96.833 | 221 | 7 | 0 | 1 | 221 | 1 | 221 | 3.09e-155 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136400 | sp|Q9LVP9|VTI13_ARATH | 70.136 | 221 | 66 | 0 | 1 | 221 | 1 | 221 | 1.54e-115 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136400 | A2Q3R8 | 96.833 | 221 | 7 | 0 | 1 | 221 | 1 | 221 | 1.48e-155 | 439 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0867870 | Msa1136400 | 0.819127 | 1.367112e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136400 | MtrunA17_Chr7g0217961 | 96.833 | 221 | 7 | 0 | 1 | 221 | 1 | 221 | 2.84e-159 | 439 |
| Msa1136400 | MtrunA17_Chr6g0453631 | 81.900 | 221 | 40 | 0 | 1 | 221 | 1 | 221 | 1.99e-134 | 376 |
| Msa1136400 | MtrunA17_Chr3g0091631 | 67.727 | 220 | 71 | 0 | 1 | 220 | 64 | 283 | 3.79e-108 | 312 |
| Msa1136400 | MtrunA17_Chr5g0418041 | 60.181 | 221 | 87 | 1 | 1 | 220 | 1 | 221 | 8.52e-96 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136400 | AT3G29100.3 | 70.136 | 221 | 66 | 0 | 1 | 221 | 1 | 221 | 1.57e-116 | 331 |
| Msa1136400 | AT5G39510.1 | 67.421 | 221 | 72 | 0 | 1 | 221 | 1 | 221 | 1.76e-106 | 306 |
| Msa1136400 | AT1G26670.1 | 63.801 | 221 | 79 | 1 | 1 | 220 | 1 | 221 | 2.87e-101 | 293 |
| Msa1136400 | AT3G29100.1 | 69.412 | 170 | 52 | 0 | 52 | 221 | 26 | 195 | 4.84e-86 | 253 |
| Msa1136400 | AT3G29100.2 | 70.060 | 167 | 50 | 0 | 55 | 221 | 1 | 167 | 4.96e-85 | 249 |
| Msa1136400 | AT3G29100.4 | 70.060 | 167 | 50 | 0 | 55 | 221 | 1 | 167 | 4.96e-85 | 249 |
| Msa1136400 | AT3G29100.5 | 70.060 | 167 | 50 | 0 | 55 | 221 | 1 | 167 | 4.96e-85 | 249 |
| Msa1136400 | AT5G39630.1 | 42.081 | 221 | 114 | 3 | 1 | 221 | 1 | 207 | 3.67e-47 | 155 |
Find 83 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTTGTAGATTCGGAAAA+TGG | 0.148334 | 7_4:-4826638 | Msa1136400:intron |
| TCCTTTGGGAATATTGTAAT+TGG | 0.172421 | 7_4:-4824015 | Msa1136400:three_prime_UTR |
| AGCAGCTGCAGTACAAATTT+TGG | 0.223793 | 7_4:+4829096 | None:intergenic |
| GCCTTGCATCTTGGCGATTT+AGG | 0.243127 | 7_4:+4824339 | None:intergenic |
| AAGTTTGCAGCCAAACATTA+AGG | 0.247833 | 7_4:-4826602 | Msa1136400:CDS |
| TTCTGTCTAACATGTCTAAA+AGG | 0.262050 | 7_4:-4824468 | Msa1136400:CDS |
| CCTCATCGTTTCAACGAATT+AGG | 0.279165 | 7_4:-4829341 | Msa1136400:five_prime_UTR |
| ACTGCAGCTGCTGCTCTTAA+TGG | 0.279246 | 7_4:-4829085 | Msa1136400:CDS |
| GCAAAATATTTCAGATATAA+AGG | 0.306073 | 7_4:-4826767 | Msa1136400:CDS |
| TATTCCCTTATGCAGCTTCA+TGG | 0.316079 | 7_4:-4824523 | Msa1136400:intron |
| TGTTTCGTTGAAGGATATTC+TGG | 0.339103 | 7_4:+4829571 | None:intergenic |
| CGGGATATGTTGTTGGAATC+AGG | 0.359202 | 7_4:-4826481 | Msa1136400:CDS |
| GGAAAACACCGCTCGAGTTT+TGG | 0.361874 | 7_4:-4823994 | Msa1136400:three_prime_UTR |
| TTTAAATATGTGTCTTGTGC+TGG | 0.371128 | 7_4:-4824213 | Msa1136400:three_prime_UTR |
| TGTTGGAAACGGAAGAGCTT+GGG | 0.371438 | 7_4:-4824965 | Msa1136400:CDS |
| GAACTTAAGAAACTTGTATC+TGG | 0.383535 | 7_4:-4826523 | Msa1136400:CDS |
| TGTACTTCTTGCTAAGTTGC+GGG | 0.406118 | 7_4:-4826578 | Msa1136400:CDS |
| TAGTAACTTAACCTATCCTT+TGG | 0.413810 | 7_4:-4824030 | Msa1136400:three_prime_UTR |
| TAGCACCATTGTCGTGGTCC+TGG | 0.413847 | 7_4:-4824422 | Msa1136400:CDS |
| AATTGATGAGGCAGAAGCTT+TGG | 0.418019 | 7_4:-4826740 | Msa1136400:intron |
| AGAAGTACACCCTTAATGTT+TGG | 0.429162 | 7_4:+4826592 | None:intergenic |
| CTCTGCCCGGGATATGTTGT+TGG | 0.438296 | 7_4:-4826488 | Msa1136400:CDS |
| AGTTTGCAGCCAAACATTAA+GGG | 0.439151 | 7_4:-4826601 | Msa1136400:CDS |
| ACATGTCTAAAAGGATGAAC+AGG | 0.448627 | 7_4:-4824459 | Msa1136400:CDS |
| ATGTTTATGTTGTGCAATGC+TGG | 0.454115 | 7_4:-4824261 | Msa1136400:three_prime_UTR |
| TCTTATAAAGCCTTGCATCT+TGG | 0.454183 | 7_4:+4824330 | None:intergenic |
| CAAATCCAGTGACAGAGTTA+AGG | 0.455677 | 7_4:-4825003 | Msa1136400:CDS |
| GCTGAGAATGCAAATCTTGA+AGG | 0.459483 | 7_4:+4824934 | None:intergenic |
| AGTAACTTAACCTATCCTTT+GGG | 0.462133 | 7_4:-4824029 | Msa1136400:three_prime_UTR |
| AGAGGTGGTGGATGGAAGAT+CGG | 0.475086 | 7_4:+4829382 | None:intergenic |
| TTGGCGATTTAGGAGGTGTC+TGG | 0.480923 | 7_4:+4824349 | None:intergenic |
| AATTGTAAGGAATTTGATAG+AGG | 0.482426 | 7_4:+4829364 | None:intergenic |
| GGCATCCACGTGCGTATTGA+CGG | 0.484287 | 7_4:-4829617 | Msa1136400:five_prime_UTR |
| AATATTTCAGATATAAAGGC+TGG | 0.486099 | 7_4:-4826763 | Msa1136400:CDS |
| GCTGTCCTTAACTCTGTCAC+TGG | 0.486997 | 7_4:+4824998 | None:intergenic |
| GTAACATGAACCCCTCTGCC+CGG | 0.498653 | 7_4:-4826501 | Msa1136400:CDS |
| TCCAATTACAATATTCCCAA+AGG | 0.509570 | 7_4:+4824014 | None:intergenic |
| GTGACAGAGTTAAGGACAGC+AGG | 0.510896 | 7_4:-4824995 | Msa1136400:CDS |
| AAGGAATTTGATAGAGGTGG+TGG | 0.515608 | 7_4:+4829370 | None:intergenic |
| CTGATTCCAACAACATATCC+CGG | 0.518713 | 7_4:+4826482 | None:intergenic |
| GTGTACTTCTTGCTAAGTTG+CGG | 0.523629 | 7_4:-4826579 | Msa1136400:CDS |
| TGAAACGATGAGGAATTGTA+AGG | 0.526206 | 7_4:+4829351 | None:intergenic |
| TCCTAAATCGCCAAGATGCA+AGG | 0.529990 | 7_4:-4824340 | Msa1136400:three_prime_UTR |
| TTACAATATTCCCAAAGGAT+AGG | 0.530254 | 7_4:+4824019 | None:intergenic |
| GGACAGCAGGAGAACAATGT+TGG | 0.535680 | 7_4:-4824982 | Msa1136400:CDS |
| CAGGAGAACAATGTTGGAAA+CGG | 0.537387 | 7_4:-4824976 | Msa1136400:CDS |
| GTAAAATTAGTATAATCCAT+TGG | 0.538581 | 7_4:-4824110 | Msa1136400:three_prime_UTR |
| ACGATGAGTACCGTGTTTGA+AGG | 0.542645 | 7_4:-4829157 | Msa1136400:CDS |
| TGTAAGGAATTTGATAGAGG+TGG | 0.544859 | 7_4:+4829367 | None:intergenic |
| CCGGCGATCTCAACAACCTC+CGG | 0.545165 | 7_4:-4829413 | Msa1136400:five_prime_UTR |
| TATAATACTAAAATGTAATG+TGG | 0.548251 | 7_4:-4824140 | Msa1136400:three_prime_UTR |
| CAACAACATATCCCGGGCAG+AGG | 0.549166 | 7_4:+4826489 | None:intergenic |
| TGGAAGATCGGAGATGTGGC+CGG | 0.553328 | 7_4:+4829394 | None:intergenic |
| GTTTAAGCGGAGAACGGCGA+AGG | 0.554198 | 7_4:+4829439 | None:intergenic |
| AATTTGATAGAGGTGGTGGA+TGG | 0.557212 | 7_4:+4829374 | None:intergenic |
| TAACATGAACCCCTCTGCCC+GGG | 0.559609 | 7_4:-4826500 | Msa1136400:CDS |
| AGCGGAGAACGGCGAAGGAA+CGG | 0.567629 | 7_4:+4829444 | None:intergenic |
| ATGTTGGAAACGGAAGAGCT+TGG | 0.571336 | 7_4:-4824966 | Msa1136400:CDS |
| TGTTATTAGCACCATTGTCG+TGG | 0.574259 | 7_4:-4824428 | Msa1136400:CDS |
| CCTTATGCAGCTTCATGGAG+TGG | 0.575473 | 7_4:-4824518 | Msa1136400:intron |
| TTGCATCTTGGCGATTTAGG+AGG | 0.575745 | 7_4:+4824342 | None:intergenic |
| AACAACATATCCCGGGCAGA+GGG | 0.578673 | 7_4:+4826490 | None:intergenic |
| CCGGAGGTTGTTGAGATCGC+CGG | 0.580642 | 7_4:+4829413 | None:intergenic |
| CGTTCTCCGCTTAAACTCTC+CGG | 0.583414 | 7_4:-4829432 | Msa1136400:five_prime_UTR |
| GTTGGAAACGGAAGAGCTTG+GGG | 0.586866 | 7_4:-4824964 | Msa1136400:CDS |
| CGGAGAGTTTAAGCGGAGAA+CGG | 0.593062 | 7_4:+4829433 | None:intergenic |
| GATTCGGAAAATGGATCTTG+AGG | 0.594367 | 7_4:-4826629 | Msa1136400:CDS |
| AGGCATGTCAGATGCTATGA+CGG | 0.603594 | 7_4:-4826461 | Msa1136400:intron |
| TGATTCCAACAACATATCCC+GGG | 0.605197 | 7_4:+4826483 | None:intergenic |
| AAGAACCAGGACCACGACAA+TGG | 0.635422 | 7_4:+4824417 | None:intergenic |
| CCTAATTCGTTGAAACGATG+AGG | 0.637252 | 7_4:+4829341 | None:intergenic |
| AGATCGCCGGAGAGTTTAAG+CGG | 0.637993 | 7_4:+4829426 | None:intergenic |
| TATAAAGGCTGGAATTGATG+AGG | 0.638175 | 7_4:-4826752 | Msa1136400:CDS |
| GCAGCTGCTGCTCTTAATGG+AGG | 0.656845 | 7_4:-4829082 | Msa1136400:intron |
| TGGATGGAAGATCGGAGATG+TGG | 0.666090 | 7_4:+4829390 | None:intergenic |
| TCAAGATAATAACAAGAACC+AGG | 0.668867 | 7_4:+4824404 | None:intergenic |
| GGAGAACGGCGAAGGAACGG+TGG | 0.671573 | 7_4:+4829447 | None:intergenic |
| ACGTTCATATCCTTCAAACA+CGG | 0.683882 | 7_4:+4829147 | None:intergenic |
| ACAACATATCCCGGGCAGAG+GGG | 0.706468 | 7_4:+4826491 | None:intergenic |
| GTCAACTACCAAAACTCGAG+CGG | 0.712313 | 7_4:+4823986 | None:intergenic |
| AAGATCGGAGATGTGGCCGG+AGG | 0.713338 | 7_4:+4829397 | None:intergenic |
| TGTGGAACGAATTAAACACG+TGG | 0.727449 | 7_4:-4829638 | None:intergenic |
| GATATTGATTGATTATAACA+CGG | 0.766058 | 7_4:+4829537 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAATA+AGG | - | chr7_4:4827437-4827456 | Msa1136400:intron | 0.0% |
| !! | AATAATAATAATAATAATAA+GGG | - | chr7_4:4827438-4827457 | Msa1136400:intron | 0.0% |
| !! | AAAATAAAAATCAATTATTG+AGG | + | chr7_4:4825394-4825413 | None:intergenic | 10.0% |
| !!! | TGAAATTATATTTAGTTTTA+GGG | + | chr7_4:4826675-4826694 | None:intergenic | 10.0% |
| !!! | TTGAAATTATATTTAGTTTT+AGG | + | chr7_4:4826676-4826695 | None:intergenic | 10.0% |
| !! | TATTTAACCTTAAAATAATT+GGG | + | chr7_4:4827627-4827646 | None:intergenic | 10.0% |
| !! | ATATTTAACCTTAAAATAAT+TGG | + | chr7_4:4827628-4827647 | None:intergenic | 10.0% |
| !! | AAAACATTTATTGAAATATA+AGG | + | chr7_4:4827690-4827709 | None:intergenic | 10.0% |
| !! | ATAAAGTGATAGTATAATTT+AGG | + | chr7_4:4824662-4824681 | None:intergenic | 15.0% |
| !! | GTAAAAATTAAGTTTATGTT+TGG | - | chr7_4:4825143-4825162 | Msa1136400:intron | 15.0% |
| !!! | AATATAATTTTAATGTGAAG+TGG | + | chr7_4:4825262-4825281 | None:intergenic | 15.0% |
| !!! | AGTTTAAAATGTTTTGAAAT+AGG | - | chr7_4:4825608-4825627 | Msa1136400:intron | 15.0% |
| !!! | ATGTGTTTATTTTCTATATA+AGG | - | chr7_4:4825644-4825663 | Msa1136400:intron | 15.0% |
| !!! | TTTAATATTTCTGATCTTAT+AGG | - | chr7_4:4826190-4826209 | Msa1136400:intron | 15.0% |
| !!! | TTAATATTTCTGATCTTATA+GGG | - | chr7_4:4826191-4826210 | Msa1136400:intron | 15.0% |
| !!! | TCTTTTTTTTAACAAACAAA+AGG | + | chr7_4:4826467-4826486 | None:intergenic | 15.0% |
| !!! | CTTTTTGATAAATATCTTAA+TGG | + | chr7_4:4826714-4826733 | None:intergenic | 15.0% |
| !! | AAAACATTTAATGAAATGTA+GGG | + | chr7_4:4827882-4827901 | None:intergenic | 15.0% |
| !! | AAAAACATTTAATGAAATGT+AGG | + | chr7_4:4827881-4827900 | None:intergenic | 15.0% |
| !!! | TTTAAGGTTAAATATGTTTT+TGG | - | chr7_4:4827633-4827652 | Msa1136400:intron | 15.0% |
| !! | TTAAAATCCCTAAAATAATA+AGG | - | chr7_4:4827709-4827728 | Msa1136400:intron | 15.0% |
| !! | ATATTTAACCCTAAAATAAT+TGG | - | chr7_4:4827772-4827791 | Msa1136400:intron | 15.0% |
| !! | TATTTAACCCTAAAATAATT+GGG | - | chr7_4:4827773-4827792 | Msa1136400:intron | 15.0% |
| !! | AAAAACATTTAATGAAATGT+AGG | - | chr7_4:4827881-4827900 | Msa1136400:intron | 15.0% |
| !! | AAAACATTTAATGAAATGTA+GGG | - | chr7_4:4827882-4827901 | Msa1136400:intron | 15.0% |
| !!! | CAAAAAGTTTATATTTCTTT+TGG | + | chr7_4:4828150-4828169 | None:intergenic | 15.0% |
| !!! | AGAAATATAAACTTTTTGTA+CGG | - | chr7_4:4828152-4828171 | Msa1136400:intron | 15.0% |
| !!! | ATTTTTTACATTAATCTCTT+CGG | - | chr7_4:4828335-4828354 | Msa1136400:intron | 15.0% |
| !! | GAAATTCTAATTTCTAATAA+TGG | - | chr7_4:4828805-4828824 | Msa1136400:intron | 15.0% |
| !!! | AATTGATTAAGTTTTATCTT+CGG | - | chr7_4:4828888-4828907 | Msa1136400:intron | 15.0% |
| !! | TATAATACTAAAATGTAATG+TGG | - | chr7_4:4829464-4829483 | Msa1136400:intron | 15.0% |
| !!! | GATATTGATTGATTATAACA+CGG | + | chr7_4:4824070-4824089 | None:intergenic | 20.0% |
| !!! | TTATCTGAATTTTCTGAATT+CGG | - | chr7_4:4824336-4824355 | Msa1136400:three_prime_UTR | 20.0% |
| !!! | CTAATTTTTGTTAACTTGTA+AGG | + | chr7_4:4824865-4824884 | None:intergenic | 20.0% |
| !!! | TTTACGTGTTTAATTTTGAT+TGG | - | chr7_4:4825107-4825126 | Msa1136400:intron | 20.0% |
| !!! | TTTATGTTTGGTTTCAATTT+TGG | - | chr7_4:4825155-4825174 | Msa1136400:intron | 20.0% |
| !! | AAAAATCAATTCTACAACTT+TGG | + | chr7_4:4825198-4825217 | None:intergenic | 20.0% |
| !! | TGAATTAAACACTAAATTTG+AGG | + | chr7_4:4825420-4825439 | None:intergenic | 20.0% |
| !!! | TAAAATGTTTTGAAATAGGT+TGG | - | chr7_4:4825612-4825631 | Msa1136400:intron | 20.0% |
| !!! | TAAGCAAAAAAGTATTAAGT+TGG | - | chr7_4:4826084-4826103 | Msa1136400:intron | 20.0% |
| !! | TATTCTCATAAAATGACTAT+TGG | + | chr7_4:4826576-4826595 | None:intergenic | 20.0% |
| !!! | AATAGTCATTTTATGAGAAT+AGG | - | chr7_4:4826575-4826594 | Msa1136400:CDS | 20.0% |
| !!! | ATAGTCATTTTATGAGAATA+GGG | - | chr7_4:4826576-4826595 | Msa1136400:CDS | 20.0% |
| !! | AAGATATTTATCAAAAAGAG+AGG | - | chr7_4:4826716-4826735 | Msa1136400:intron | 20.0% |
| !! | GCAAAATATTTCAGATATAA+AGG | - | chr7_4:4826837-4826856 | Msa1136400:intron | 20.0% |
| !!! | GAATAGTCCTTATTATTTTA+GGG | + | chr7_4:4827719-4827738 | None:intergenic | 20.0% |
| !!! | AGAATAGTCCTTATTATTTT+AGG | + | chr7_4:4827720-4827739 | None:intergenic | 20.0% |
| !!! | TTTAGGGTTAAATATGTTTT+TGG | + | chr7_4:4827767-4827786 | None:intergenic | 20.0% |
| !!! | CTATATAATTTGTGAAGATT+TGG | - | chr7_4:4828085-4828104 | Msa1136400:intron | 20.0% |
| !!! | ATTTGGTTGAATTTTTACTA+TGG | - | chr7_4:4828102-4828121 | Msa1136400:intron | 20.0% |
| !!! | GAAATATAAACTTTTTGTAC+GGG | - | chr7_4:4828153-4828172 | Msa1136400:intron | 20.0% |
| !! | TTAAAACATCAGGAATTAAA+TGG | + | chr7_4:4828428-4828447 | None:intergenic | 20.0% |
| !!! | CTCAATTAATTTAAAACATC+AGG | + | chr7_4:4828438-4828457 | None:intergenic | 20.0% |
| !!! | TTCTGAATATTCATTTTTCT+TGG | - | chr7_4:4828474-4828493 | Msa1136400:intron | 20.0% |
| !!! | TCTGAATATTCATTTTTCTT+GGG | - | chr7_4:4828475-4828494 | Msa1136400:intron | 20.0% |
| !!! | GAATTTCTCTTTTTTTTTTC+TGG | - | chr7_4:4829295-4829314 | Msa1136400:intron | 20.0% |
| !!! | TCATCTTTTTCTGAATAATA+AGG | + | chr7_4:4829322-4829341 | None:intergenic | 20.0% |
| !! | GTAAAATTAGTATAATCCAT+TGG | - | chr7_4:4829494-4829513 | Msa1136400:intron | 20.0% |
| !!! | TATAGTTTTTGTTTCGTTGA+AGG | + | chr7_4:4824045-4824064 | None:intergenic | 25.0% |
| ! | AATTGTAAGGAATTTGATAG+AGG | + | chr7_4:4824243-4824262 | None:intergenic | 25.0% |
| !!! | GAATTCGGTGTATATTATTA+TGG | - | chr7_4:4824351-4824370 | Msa1136400:three_prime_UTR | 25.0% |
| !!! | AAATAGCGATTTTATTTCTG+TGG | - | chr7_4:4824422-4824441 | Msa1136400:CDS | 25.0% |
| ! | CTAGTAAGTGATATGATTTA+GGG | + | chr7_4:4824630-4824649 | None:intergenic | 25.0% |
| ! | TCTAGTAAGTGATATGATTT+AGG | + | chr7_4:4824631-4824650 | None:intergenic | 25.0% |
| !!! | TGATCTTTTGTTAACTTGTA+AGG | + | chr7_4:4824921-4824940 | None:intergenic | 25.0% |
| ! | TTTGCGTATTCATAAATTTC+AGG | - | chr7_4:4824974-4824993 | Msa1136400:CDS | 25.0% |
| ! | TTGCGTATTCATAAATTTCA+GGG | - | chr7_4:4824975-4824994 | Msa1136400:CDS | 25.0% |
| !! | AGTATGACCCTTATAATTTT+AGG | - | chr7_4:4825005-4825024 | Msa1136400:CDS | 25.0% |
| !! | GTATGACCCTTATAATTTTA+GGG | - | chr7_4:4825006-4825025 | Msa1136400:CDS | 25.0% |
| !! | TATGACCCTTATAATTTTAG+GGG | - | chr7_4:4825007-4825026 | Msa1136400:CDS | 25.0% |
| ! | CAATTGATTATGTGTATGTT+TGG | - | chr7_4:4825223-4825242 | Msa1136400:intron | 25.0% |
| !!! | AATTTTAGCTTCAAACGATT+GGG | + | chr7_4:4825360-4825379 | None:intergenic | 25.0% |
| !!! | AAATTTTAGCTTCAAACGAT+TGG | + | chr7_4:4825361-4825380 | None:intergenic | 25.0% |
| !! | AATCGTTTGAAGCTAAAATT+TGG | - | chr7_4:4825360-4825379 | Msa1136400:intron | 25.0% |
| !! | AGTTGAATGTAAATCGATTT+AGG | + | chr7_4:4825465-4825484 | None:intergenic | 25.0% |
| ! | TGTAACATTATGTCTATACA+TGG | - | chr7_4:4825570-4825589 | Msa1136400:intron | 25.0% |
| ! | GTAACATTATGTCTATACAT+GGG | - | chr7_4:4825571-4825590 | Msa1136400:intron | 25.0% |
| ! | AATTTGAGGAATGTAATCAA+GGG | + | chr7_4:4825735-4825754 | None:intergenic | 25.0% |
| ! | AAATTTGAGGAATGTAATCA+AGG | + | chr7_4:4825736-4825755 | None:intergenic | 25.0% |
| ! | TTGATTACATTCCTCAAATT+TGG | - | chr7_4:4825735-4825754 | Msa1136400:intron | 25.0% |
| ! | TCTGACGAAAATTTCTTAAA+AGG | + | chr7_4:4825854-4825873 | None:intergenic | 25.0% |
| ! | CATCAAACATAAAGATAAAG+AGG | + | chr7_4:4826249-4826268 | None:intergenic | 25.0% |
| !! | AACAAAAGGCACATAAATAA+GGG | + | chr7_4:4826453-4826472 | None:intergenic | 25.0% |
| !! | AAACAAAAGGCACATAAATA+AGG | + | chr7_4:4826454-4826473 | None:intergenic | 25.0% |
| !!! | AATAGGGTATATTTTGCTAT+CGG | - | chr7_4:4826592-4826611 | Msa1136400:CDS | 25.0% |
| ! | AATATTTCAGATATAAAGGC+TGG | - | chr7_4:4826841-4826860 | Msa1136400:intron | 25.0% |
| ! | CCTTTCAAACAAAATGAAAA+AGG | + | chr7_4:4826901-4826920 | None:intergenic | 25.0% |
| !!! | CCTTTTTCATTTTGTTTGAA+AGG | - | chr7_4:4826898-4826917 | Msa1136400:intron | 25.0% |
| ! | TTCAAAATCACGCAAAATAT+AGG | + | chr7_4:4827660-4827679 | None:intergenic | 25.0% |
| !!! | ACATTTTAGAACAGTAGTTA+TGG | - | chr7_4:4828209-4828228 | Msa1136400:intron | 25.0% |
| ! | AAATACCATTTGCAACATTA+GGG | + | chr7_4:4828402-4828421 | None:intergenic | 25.0% |
| ! | TAAGCAATAGGAATCAAATT+TGG | + | chr7_4:4828510-4828529 | None:intergenic | 25.0% |
| ! | TCATATTAGCAATAAGCAAT+AGG | + | chr7_4:4828522-4828541 | None:intergenic | 25.0% |
| ! | ATTGCTAATATGACAAAAAC+AGG | - | chr7_4:4828529-4828548 | Msa1136400:intron | 25.0% |
| !!! | TACATTGCTTTTCTTCTTTA+CGG | - | chr7_4:4828925-4828944 | Msa1136400:intron | 25.0% |
| !!! | AGAACAACATTTTAATCCAA+TGG | + | chr7_4:4829513-4829532 | None:intergenic | 25.0% |
| GGTTTGATTGAAACTTGAAA+GGG | + | chr7_4:4824139-4824158 | None:intergenic | 30.0% | |
| TGGTTTGATTGAAACTTGAA+AGG | + | chr7_4:4824140-4824159 | None:intergenic | 30.0% | |
| !!! | CTTGTTTTGTGGCTAATTTT+CGG | - | chr7_4:4824287-4824306 | Msa1136400:three_prime_UTR | 30.0% |
| CATACTAGGTGATGTAATTT+AGG | + | chr7_4:4824890-4824909 | None:intergenic | 30.0% | |
| TGCGTATTCATAAATTTCAG+GGG | - | chr7_4:4824976-4824995 | Msa1136400:CDS | 30.0% | |
| ACTCTCCCCTAAAATTATAA+GGG | + | chr7_4:4825015-4825034 | None:intergenic | 30.0% | |
| AACTCTCCCCTAAAATTATA+AGG | + | chr7_4:4825016-4825035 | None:intergenic | 30.0% | |
| !! | TTATAATTTTAGGGGAGAGT+TGG | - | chr7_4:4825015-4825034 | Msa1136400:CDS | 30.0% |
| ! | GGTGATTTACTAGATTTTAG+TGG | - | chr7_4:4825036-4825055 | Msa1136400:CDS | 30.0% |
| !! | ACTAGATTTTAGTGGTTACA+TGG | - | chr7_4:4825044-4825063 | Msa1136400:CDS | 30.0% |
| !!! | ACGTGTTTAATTTTGATTGG+TGG | - | chr7_4:4825110-4825129 | Msa1136400:intron | 30.0% |
| !! | ATGTTTGGTTTCAATTTTGG+AGG | - | chr7_4:4825158-4825177 | Msa1136400:intron | 30.0% |
| !!! | ATTTTAGCTTCAAACGATTG+GGG | + | chr7_4:4825359-4825378 | None:intergenic | 30.0% |
| ATCAAGGGAATACTCATTTA+AGG | + | chr7_4:4825720-4825739 | None:intergenic | 30.0% | |
| !! | AAAGAGCATTACCAAATTTG+AGG | + | chr7_4:4825749-4825768 | None:intergenic | 30.0% |
| TCAGAAAATCTCTATGACAA+TGG | - | chr7_4:4825869-4825888 | Msa1136400:intron | 30.0% | |
| AAAACTAGTAAAACTGTAGG+AGG | + | chr7_4:4825905-4825924 | None:intergenic | 30.0% | |
| CAGAAAACTAGTAAAACTGT+AGG | + | chr7_4:4825908-4825927 | None:intergenic | 30.0% | |
| !!! | ACAGTTTTACTAGTTTTCTG+TGG | - | chr7_4:4825908-4825927 | Msa1136400:intron | 30.0% |
| ACTATTAAGGGAAACATTAG+AGG | + | chr7_4:4826126-4826145 | None:intergenic | 30.0% | |
| AGCAACTCGATAACTATTAA+GGG | + | chr7_4:4826138-4826157 | None:intergenic | 30.0% | |
| CTAAAGCGAATTATTCACTT+TGG | + | chr7_4:4826298-4826317 | None:intergenic | 30.0% | |
| AAGTGAATAATTCGCTTTAG+AGG | - | chr7_4:4826298-4826317 | Msa1136400:intron | 30.0% | |
| ! | AGTGAATAATTCGCTTTAGA+GGG | - | chr7_4:4826299-4826318 | Msa1136400:intron | 30.0% |
| ! | ACAAAAGGCACATAAATAAG+GGG | + | chr7_4:4826452-4826471 | None:intergenic | 30.0% |
| ! | GTGCCTTTTGTTAGTTAATT+AGG | - | chr7_4:4826500-4826519 | Msa1136400:CDS | 30.0% |
| GCTCCTAATTAACTAACAAA+AGG | + | chr7_4:4826506-4826525 | None:intergenic | 30.0% | |
| TTTGTTAGTTAATTAGGAGC+TGG | - | chr7_4:4826506-4826525 | Msa1136400:CDS | 30.0% | |
| TTGTTAGTTAATTAGGAGCT+GGG | - | chr7_4:4826507-4826526 | Msa1136400:CDS | 30.0% | |
| !! | TCCTTCTTTTTGCTGTATTA+TGG | - | chr7_4:4826922-4826941 | Msa1136400:intron | 30.0% |
| !! | CCTTCTTTTTGCTGTATTAT+GGG | - | chr7_4:4826923-4826942 | Msa1136400:intron | 30.0% |
| !! | TGCTTATCGATTTGTAGATT+CGG | - | chr7_4:4826959-4826978 | Msa1136400:intron | 30.0% |
| GAACTTAAGAAACTTGTATC+TGG | - | chr7_4:4827081-4827100 | Msa1136400:intron | 30.0% | |
| !! | ACACTCTTTGATGATGTTAA+AGG | - | chr7_4:4827185-4827204 | Msa1136400:intron | 30.0% |
| TGGTTTCACATAACAATGAA+TGG | + | chr7_4:4827212-4827231 | None:intergenic | 30.0% | |
| TGTTATGTGAAACCATGATA+AGG | - | chr7_4:4827217-4827236 | Msa1136400:intron | 30.0% | |
| ACAGAATATAAAGGAGATAG+AGG | + | chr7_4:4827255-4827274 | None:intergenic | 30.0% | |
| CATGGTTTCACAGAATATAA+AGG | + | chr7_4:4827264-4827283 | None:intergenic | 30.0% | |
| TATATTCTGTGAAACCATGA+TGG | - | chr7_4:4827265-4827284 | Msa1136400:intron | 30.0% | |
| ! | TGACTTGAAACTTTAGAGAT+TGG | + | chr7_4:4827310-4827329 | None:intergenic | 30.0% |
| TGTAGGGACTATTATTCAAA+GGG | + | chr7_4:4827502-4827521 | None:intergenic | 30.0% | |
| ATGTAGGGACTATTATTCAA+AGG | + | chr7_4:4827503-4827522 | None:intergenic | 30.0% | |
| GAAATACCATTTGCAACATT+AGG | + | chr7_4:4828403-4828422 | None:intergenic | 30.0% | |
| ! | AATAGGAATCAAATTTGGTG+GGG | + | chr7_4:4828505-4828524 | None:intergenic | 30.0% |
| CAATAGGAATCAAATTTGGT+GGG | + | chr7_4:4828506-4828525 | None:intergenic | 30.0% | |
| ! | GATTAATGTTTTCAACTGAG+AGG | - | chr7_4:4828573-4828592 | Msa1136400:intron | 30.0% |
| ACAAGCAAATCAAAAGTGAA+AGG | + | chr7_4:4828744-4828763 | None:intergenic | 30.0% | |
| ! | ATGAAAGTGTAACTCTGTAA+TGG | - | chr7_4:4829011-4829030 | Msa1136400:intron | 30.0% |
| TTCTGTCTAACATGTCTAAA+AGG | - | chr7_4:4829136-4829155 | Msa1136400:CDS | 30.0% | |
| TCAAGATAATAACAAGAACC+AGG | + | chr7_4:4829203-4829222 | None:intergenic | 30.0% | |
| TTTAAATATGTGTCTTGTGC+TGG | - | chr7_4:4829391-4829410 | Msa1136400:five_prime_UTR | 30.0% | |
| TAGTAACTTAACCTATCCTT+TGG | - | chr7_4:4829574-4829593 | Msa1136400:five_prime_UTR | 30.0% | |
| AGTAACTTAACCTATCCTTT+GGG | - | chr7_4:4829575-4829594 | Msa1136400:five_prime_UTR | 30.0% | |
| TTACAATATTCCCAAAGGAT+AGG | + | chr7_4:4829588-4829607 | None:intergenic | 30.0% | |
| ! | TCCTTTGGGAATATTGTAAT+TGG | - | chr7_4:4829589-4829608 | Msa1136400:five_prime_UTR | 30.0% |
| TCCAATTACAATATTCCCAA+AGG | + | chr7_4:4829593-4829612 | None:intergenic | 30.0% | |
| TGTTTCGTTGAAGGATATTC+TGG | + | chr7_4:4824036-4824055 | None:intergenic | 35.0% | |
| TGTAAGGAATTTGATAGAGG+TGG | + | chr7_4:4824240-4824259 | None:intergenic | 35.0% | |
| TGAAACGATGAGGAATTGTA+AGG | + | chr7_4:4824256-4824275 | None:intergenic | 35.0% | |
| !!! | ACGAATTAGGTCTTGTTTTG+TGG | - | chr7_4:4824276-4824295 | Msa1136400:three_prime_UTR | 35.0% |
| ACGTTCATATCCTTCAAACA+CGG | + | chr7_4:4824460-4824479 | None:intergenic | 35.0% | |
| !!! | TTCTTAATCTCGCTTTTTCG+TGG | - | chr7_4:4824561-4824580 | Msa1136400:intron | 35.0% |
| AGTACTGTAATCATCTGTGT+TGG | - | chr7_4:4824764-4824783 | Msa1136400:intron | 35.0% | |
| !! | GTAAGGACTAGTTTCATACT+AGG | + | chr7_4:4824904-4824923 | None:intergenic | 35.0% |
| AGCCCAACGTAATTCAAAAT+CGG | - | chr7_4:4824944-4824963 | Msa1136400:CDS | 35.0% | |
| !! | TTTGGTTTCAATTTTGGAGG+AGG | - | chr7_4:4825161-4825180 | Msa1136400:intron | 35.0% |
| CATACACATAATCAATTGCG+AGG | + | chr7_4:4825221-4825240 | None:intergenic | 35.0% | |
| ATGTAGCAGCAAAACATGAT+TGG | + | chr7_4:4825520-4825539 | None:intergenic | 35.0% | |
| ACATTATGTCTATACATGGG+TGG | - | chr7_4:4825574-4825593 | Msa1136400:intron | 35.0% | |
| ACTATTTCCCTTGCACATAT+TGG | - | chr7_4:4825787-4825806 | Msa1136400:intron | 35.0% | |
| GAAACATTAGAGGTTTCAAG+TGG | + | chr7_4:4826116-4826135 | None:intergenic | 35.0% | |
| GAGCAACTCGATAACTATTA+AGG | + | chr7_4:4826139-4826158 | None:intergenic | 35.0% | |
| GTTCAGTTTCTGCTTCAATT+CGG | + | chr7_4:4826161-4826180 | None:intergenic | 35.0% | |
| ATTTCTGATCTTATAGGGCT+AGG | - | chr7_4:4826196-4826215 | Msa1136400:intron | 35.0% | |
| AGTTAATCCGAAAAAAGGAG+GGG | + | chr7_4:4826272-4826291 | None:intergenic | 35.0% | |
| GAGTTAATCCGAAAAAAGGA+GGG | + | chr7_4:4826273-4826292 | None:intergenic | 35.0% | |
| AAGCGAATTATTCACTTTGG+AGG | + | chr7_4:4826295-4826314 | None:intergenic | 35.0% | |
| GTGAGCAATTCAGTTTAGAA+AGG | + | chr7_4:4826413-4826432 | None:intergenic | 35.0% | |
| CATGAAATGATAGACGTCAA+TGG | + | chr7_4:4826744-4826763 | None:intergenic | 35.0% | |
| ! | TTTTGCTTCTTTTGTTCTGC+AGG | + | chr7_4:4826823-4826842 | None:intergenic | 35.0% |
| TATAAAGGCTGGAATTGATG+AGG | - | chr7_4:4826852-4826871 | Msa1136400:intron | 35.0% | |
| CAAAATGAAAAAGGCGAAGA+GGG | + | chr7_4:4826892-4826911 | None:intergenic | 35.0% | |
| ACAAAATGAAAAAGGCGAAG+AGG | + | chr7_4:4826893-4826912 | None:intergenic | 35.0% | |
| CCCATAATACAGCAAAAAGA+AGG | + | chr7_4:4826926-4826945 | None:intergenic | 35.0% | |
| CGATTTGTAGATTCGGAAAA+TGG | - | chr7_4:4826966-4826985 | Msa1136400:intron | 35.0% | |
| AAGTTTGCAGCCAAACATTA+AGG | - | chr7_4:4827002-4827021 | Msa1136400:intron | 35.0% | |
| AGTTTGCAGCCAAACATTAA+GGG | - | chr7_4:4827003-4827022 | Msa1136400:intron | 35.0% | |
| ! | AGAAGTACACCCTTAATGTT+TGG | + | chr7_4:4827015-4827034 | None:intergenic | 35.0% |
| ACCATGATAAGGCAAAGAAT+TGG | - | chr7_4:4827228-4827247 | Msa1136400:intron | 35.0% | |
| ACCAATTCTTTGCCTTATCA+TGG | + | chr7_4:4827232-4827251 | None:intergenic | 35.0% | |
| GTAGGGACTATTATTCAAAG+GGG | + | chr7_4:4827501-4827520 | None:intergenic | 35.0% | |
| !!! | AGCGACTAATTTTGATAACG+GGG | + | chr7_4:4827560-4827579 | None:intergenic | 35.0% |
| !! | CAGCGACTAATTTTGATAAC+GGG | + | chr7_4:4827561-4827580 | None:intergenic | 35.0% |
| !! | GCAGCGACTAATTTTGATAA+CGG | + | chr7_4:4827562-4827581 | None:intergenic | 35.0% |
| !! | AGTGGGTCCCAATTATTTTA+AGG | - | chr7_4:4827617-4827636 | Msa1136400:intron | 35.0% |
| TTCAAAGTCACGCAAAATGT+AGG | - | chr7_4:4827739-4827758 | Msa1136400:intron | 35.0% | |
| TCAAAGTCACGCAAAATGTA+GGG | - | chr7_4:4827740-4827759 | Msa1136400:intron | 35.0% | |
| !! | AGTGGGTCCCAATTATTTTA+GGG | + | chr7_4:4827617-4827636 | None:intergenic | 35.0% |
| !! | TAGTGGGTCCCAATTATTTT+AGG | + | chr7_4:4827616-4827635 | None:intergenic | 35.0% |
| TAAAGTTAGGAAGACAGTAG+AGG | - | chr7_4:4828052-4828071 | Msa1136400:intron | 35.0% | |
| GCAATAGGAATCAAATTTGG+TGG | + | chr7_4:4828507-4828526 | None:intergenic | 35.0% | |
| ACATGTCTAAAAGGATGAAC+AGG | - | chr7_4:4829145-4829164 | Msa1136400:CDS | 35.0% | |
| TCTTATAAAGCCTTGCATCT+TGG | + | chr7_4:4829277-4829296 | None:intergenic | 35.0% | |
| ATGTTTATGTTGTGCAATGC+TGG | - | chr7_4:4829343-4829362 | Msa1136400:five_prime_UTR | 35.0% | |
| !! | AATTTGATAGAGGTGGTGGA+TGG | + | chr7_4:4824233-4824252 | None:intergenic | 40.0% |
| AAGGAATTTGATAGAGGTGG+TGG | + | chr7_4:4824237-4824256 | None:intergenic | 40.0% | |
| CCTAATTCGTTGAAACGATG+AGG | + | chr7_4:4824266-4824285 | None:intergenic | 40.0% | |
| CCTCATCGTTTCAACGAATT+AGG | - | chr7_4:4824263-4824282 | Msa1136400:three_prime_UTR | 40.0% | |
| ! | GTGGCTAATTTTCGGTCATA+AGG | - | chr7_4:4824295-4824314 | Msa1136400:three_prime_UTR | 40.0% |
| ! | AGCAGCTGCAGTACAAATTT+TGG | + | chr7_4:4824511-4824530 | None:intergenic | 40.0% |
| AAAATACCGCACCATGATTC+TGG | + | chr7_4:4824592-4824611 | None:intergenic | 40.0% | |
| ! | GGTGTTGTGCTTCATAAGTA+AGG | + | chr7_4:4824696-4824715 | None:intergenic | 40.0% |
| ! | CTTGTAAGGAGTATGAAGCA+TGG | + | chr7_4:4824851-4824870 | None:intergenic | 40.0% |
| GCCCAACGTAATTCAAAATC+GGG | - | chr7_4:4824945-4824964 | Msa1136400:CDS | 40.0% | |
| ! | CCCCGATTTTGAATTACGTT+GGG | + | chr7_4:4824949-4824968 | None:intergenic | 40.0% |
| CCCAACGTAATTCAAAATCG+GGG | - | chr7_4:4824946-4824965 | Msa1136400:CDS | 40.0% | |
| ! | ACCCCGATTTTGAATTACGT+TGG | + | chr7_4:4824950-4824969 | None:intergenic | 40.0% |
| GAATTTGGGAAGCTACAGTT+TGG | - | chr7_4:4825304-4825323 | Msa1136400:intron | 40.0% | |
| ATTGGGGAATTACAGCAACA+CGG | + | chr7_4:4825343-4825362 | None:intergenic | 40.0% | |
| ! | TCAAAGCGCTTTCCAAAGAA+AGG | + | chr7_4:4825822-4825841 | None:intergenic | 40.0% |
| ! | AGGTATGCATTTGAAACAGC+AGG | + | chr7_4:4826229-4826248 | None:intergenic | 40.0% |
| !!! | TTTGATGCCCCTCCTTTTTT+CGG | - | chr7_4:4826262-4826281 | Msa1136400:intron | 40.0% |
| GGAGTTAATCCGAAAAAAGG+AGG | + | chr7_4:4826274-4826293 | None:intergenic | 40.0% | |
| GGAGGAGTTAATCCGAAAAA+AGG | + | chr7_4:4826277-4826296 | None:intergenic | 40.0% | |
| GTGAACGATTCAGCTTAGAA+GGG | + | chr7_4:4826391-4826410 | None:intergenic | 40.0% | |
| CGGCTTACTTGAGTATTTGA+TGG | - | chr7_4:4826612-4826631 | Msa1136400:CDS | 40.0% | |
| TGACGTCTATCATTTCATGC+TGG | - | chr7_4:4826745-4826764 | Msa1136400:CDS | 40.0% | |
| AATTGATGAGGCAGAAGCTT+TGG | - | chr7_4:4826864-4826883 | Msa1136400:intron | 40.0% | |
| GATTCGGAAAATGGATCTTG+AGG | - | chr7_4:4826975-4826994 | Msa1136400:intron | 40.0% | |
| GTGTACTTCTTGCTAAGTTG+CGG | - | chr7_4:4827025-4827044 | Msa1136400:intron | 40.0% | |
| TGTACTTCTTGCTAAGTTGC+GGG | - | chr7_4:4827026-4827045 | Msa1136400:intron | 40.0% | |
| TGATTCCAACAACATATCCC+GGG | + | chr7_4:4827124-4827143 | None:intergenic | 40.0% | |
| CTGATTCCAACAACATATCC+CGG | + | chr7_4:4827125-4827144 | None:intergenic | 40.0% | |
| AAACCATGATGGCTATGTAC+TGG | - | chr7_4:4827276-4827295 | Msa1136400:intron | 40.0% | |
| !! | GATAACGGGGATAAAATGTG+AGG | + | chr7_4:4827547-4827566 | None:intergenic | 40.0% |
| CGCTGCTGTTAATTCTCTAA+CGG | - | chr7_4:4827576-4827595 | Msa1136400:intron | 40.0% | |
| GCATCCCGTTAGAGAATTAA+CGG | - | chr7_4:4827816-4827835 | Msa1136400:intron | 40.0% | |
| !! | GCAGGGACTAATTTTGAGAA+CGG | - | chr7_4:4827838-4827857 | Msa1136400:intron | 40.0% |
| GTAGGGACTATTCTTCAAAG+AGG | - | chr7_4:4827899-4827918 | Msa1136400:intron | 40.0% | |
| ! | TCAAAGAGGCGCAAAATGTA+AGG | - | chr7_4:4827913-4827932 | Msa1136400:intron | 40.0% |
| !!! | TCTTTTGGTGTTTGCTTCAC+TGG | + | chr7_4:4828135-4828154 | None:intergenic | 40.0% |
| TCTCTTCGGACATTTCATGT+TGG | - | chr7_4:4828349-4828368 | Msa1136400:intron | 40.0% | |
| TTGAGCCCTAATGTTGCAAA+TGG | - | chr7_4:4828394-4828413 | Msa1136400:intron | 40.0% | |
| CAAATCCAGTGACAGAGTTA+AGG | - | chr7_4:4828601-4828620 | Msa1136400:intron | 40.0% | |
| CAGGAGAACAATGTTGGAAA+CGG | - | chr7_4:4828628-4828647 | Msa1136400:intron | 40.0% | |
| GCTGAGAATGCAAATCTTGA+AGG | + | chr7_4:4828673-4828692 | None:intergenic | 40.0% | |
| GTGTAACTCTGTAATGGTAG+TGG | - | chr7_4:4829017-4829036 | Msa1136400:intron | 40.0% | |
| CACACTGTTTGATCTTCTGA+TGG | - | chr7_4:4829054-4829073 | Msa1136400:intron | 40.0% | |
| TATTCCCTTATGCAGCTTCA+TGG | - | chr7_4:4829081-4829100 | Msa1136400:intron | 40.0% | |
| TGTTATTAGCACCATTGTCG+TGG | - | chr7_4:4829176-4829195 | Msa1136400:exon | 40.0% | |
| CTTGAAAGGGATCGAAACGA+CGG | + | chr7_4:4824126-4824145 | None:intergenic | 45.0% | |
| ! | ACGATGAGTACCGTGTTTGA+AGG | - | chr7_4:4824447-4824466 | Msa1136400:CDS | 45.0% |
| TCGTGGATTTGCCAGAATCA+TGG | - | chr7_4:4824578-4824597 | Msa1136400:intron | 45.0% | |
| GATTTGCCAGAATCATGGTG+CGG | - | chr7_4:4824583-4824602 | Msa1136400:intron | 45.0% | |
| !! | TGTTGGTGTTGTGTCAGTGT+CGG | - | chr7_4:4824781-4824800 | Msa1136400:intron | 45.0% |
| TATGAAGCATGGACACTCCT+CGG | + | chr7_4:4824840-4824859 | None:intergenic | 45.0% | |
| GGAATTACAGCAACACGGTA+TGG | + | chr7_4:4825338-4825357 | None:intergenic | 45.0% | |
| TGTCTATACATGGGTGGAAG+TGG | - | chr7_4:4825580-4825599 | Msa1136400:intron | 45.0% | |
| CAGTGCACCAATATGTGCAA+GGG | + | chr7_4:4825797-4825816 | None:intergenic | 45.0% | |
| GAAGCAGAAACTGAACTCTG+TGG | - | chr7_4:4826165-4826184 | Msa1136400:intron | 45.0% | |
| GGTGAACGATTCAGCTTAGA+AGG | + | chr7_4:4826392-4826411 | None:intergenic | 45.0% | |
| AGTTAATTAGGAGCTGGGTG+AGG | - | chr7_4:4826512-4826531 | Msa1136400:CDS | 45.0% | |
| CGGGATATGTTGTTGGAATC+AGG | - | chr7_4:4827123-4827142 | Msa1136400:intron | 45.0% | |
| AGGCATGTCAGATGCTATGA+CGG | - | chr7_4:4827143-4827162 | Msa1136400:intron | 45.0% | |
| AAGCCAGTACATAGCCATCA+TGG | + | chr7_4:4827282-4827301 | None:intergenic | 45.0% | |
| ! | TCAAAGGGGCGCAAAATGTA+AGG | + | chr7_4:4827487-4827506 | None:intergenic | 45.0% |
| TCTCTAACGGAATGCTGATG+TGG | - | chr7_4:4827589-4827608 | Msa1136400:intron | 45.0% | |
| AATGCTGATGTGGCAGTTAG+TGG | - | chr7_4:4827599-4827618 | Msa1136400:intron | 45.0% | |
| ATGCTGATGTGGCAGTTAGT+GGG | - | chr7_4:4827600-4827619 | Msa1136400:intron | 45.0% | |
| ATGCTGATGTGGCAGTTAGT+GGG | + | chr7_4:4827600-4827619 | None:intergenic | 45.0% | |
| CCTGCCGTTAATTCTCTAAC+GGG | + | chr7_4:4827823-4827842 | None:intergenic | 45.0% | |
| CCCTGCCGTTAATTCTCTAA+CGG | + | chr7_4:4827824-4827843 | None:intergenic | 45.0% | |
| CCGTTAGAGAATTAACGGCA+GGG | - | chr7_4:4827821-4827840 | Msa1136400:intron | 45.0% | |
| ! | TTGGTGTTTGCTTCACTGGA+AGG | + | chr7_4:4828131-4828150 | None:intergenic | 45.0% |
| CTTCGGACATTTCATGTTGG+TGG | - | chr7_4:4828352-4828371 | Msa1136400:intron | 45.0% | |
| !! | CATGTTGGTGGTGCACAAAA+TGG | - | chr7_4:4828364-4828383 | Msa1136400:intron | 45.0% |
| ATGTTGGAAACGGAAGAGCT+TGG | - | chr7_4:4828638-4828657 | Msa1136400:intron | 45.0% | |
| TGTTGGAAACGGAAGAGCTT+GGG | - | chr7_4:4828639-4828658 | Msa1136400:intron | 45.0% | |
| CTGCATTATGCAGCGTTTCT+TGG | - | chr7_4:4828831-4828850 | Msa1136400:intron | 45.0% | |
| CACTCCATGAAGCTGCATAA+GGG | + | chr7_4:4829088-4829107 | None:intergenic | 45.0% | |
| TTGCATCTTGGCGATTTAGG+AGG | + | chr7_4:4829265-4829284 | None:intergenic | 45.0% | |
| TCCTAAATCGCCAAGATGCA+AGG | - | chr7_4:4829264-4829283 | Msa1136400:intron | 45.0% | |
| GTCAACTACCAAAACTCGAG+CGG | + | chr7_4:4829621-4829640 | None:intergenic | 45.0% | |
| !! | TATTATTATTATTATTAGTA+GGG | + | chr7_4:4827956-4827975 | None:intergenic | 5.0% |
| !! | TTATTATTATTATTATTAGT+AGG | + | chr7_4:4827957-4827976 | None:intergenic | 5.0% |
| !! | ATAATAATAATAATAAAGTT+AGG | - | chr7_4:4828039-4828058 | Msa1136400:intron | 5.0% |
| CGGAGAGTTTAAGCGGAGAA+CGG | + | chr7_4:4824174-4824193 | None:intergenic | 50.0% | |
| CGTTCTCCGCTTAAACTCTC+CGG | - | chr7_4:4824172-4824191 | Msa1136400:three_prime_UTR | 50.0% | |
| AGATCGCCGGAGAGTTTAAG+CGG | + | chr7_4:4824181-4824200 | None:intergenic | 50.0% | |
| TGGATGGAAGATCGGAGATG+TGG | + | chr7_4:4824217-4824236 | None:intergenic | 50.0% | |
| !! | AGAGGTGGTGGATGGAAGAT+CGG | + | chr7_4:4824225-4824244 | None:intergenic | 50.0% |
| ACTGCAGCTGCTGCTCTTAA+TGG | - | chr7_4:4824519-4824538 | Msa1136400:intron | 50.0% | |
| ATGTCTGACGCGACATGCAT+CGG | + | chr7_4:4824810-4824829 | None:intergenic | 50.0% | |
| CTGTAGCTTCCCAAATTCCG+CGG | + | chr7_4:4825302-4825321 | None:intergenic | 50.0% | |
| GCAGTGCACCAATATGTGCA+AGG | + | chr7_4:4825798-4825817 | None:intergenic | 50.0% | |
| TGGTGCACTGCTCCTTTCTT+TGG | - | chr7_4:4825807-4825826 | Msa1136400:intron | 50.0% | |
| AACAACATATCCCGGGCAGA+GGG | + | chr7_4:4827117-4827136 | None:intergenic | 50.0% | |
| GATGCTGATGTGGCAGTTAG+TGG | + | chr7_4:4827801-4827820 | None:intergenic | 50.0% | |
| TCTCTAACGGGATGCTGATG+TGG | + | chr7_4:4827811-4827830 | None:intergenic | 50.0% | |
| CCCGTTAGAGAATTAACGGC+AGG | - | chr7_4:4827820-4827839 | Msa1136400:intron | 50.0% | |
| GCTGTCCTTAACTCTGTCAC+TGG | + | chr7_4:4828609-4828628 | None:intergenic | 50.0% | |
| GTGACAGAGTTAAGGACAGC+AGG | - | chr7_4:4828609-4828628 | Msa1136400:intron | 50.0% | |
| GGACAGCAGGAGAACAATGT+TGG | - | chr7_4:4828622-4828641 | Msa1136400:intron | 50.0% | |
| GTTGGAAACGGAAGAGCTTG+GGG | - | chr7_4:4828640-4828659 | Msa1136400:intron | 50.0% | |
| CCACTCCATGAAGCTGCATA+AGG | + | chr7_4:4829089-4829108 | None:intergenic | 50.0% | |
| CCTTATGCAGCTTCATGGAG+TGG | - | chr7_4:4829086-4829105 | Msa1136400:CDS | 50.0% | |
| AAGAACCAGGACCACGACAA+TGG | + | chr7_4:4829190-4829209 | None:intergenic | 50.0% | |
| !! | TTGGCGATTTAGGAGGTGTC+TGG | + | chr7_4:4829258-4829277 | None:intergenic | 50.0% |
| GCCTTGCATCTTGGCGATTT+AGG | + | chr7_4:4829268-4829287 | None:intergenic | 50.0% | |
| ! | GGAAAACACCGCTCGAGTTT+TGG | - | chr7_4:4829610-4829629 | Msa1136400:five_prime_UTR | 50.0% |
| GGCATCCACGTGCGTATTGA+CGG | - | chr7_4:4823987-4824006 | Msa1136400:three_prime_UTR | 55.0% | |
| ATCGAAACGACGGCGTTGTG+AGG | + | chr7_4:4824116-4824135 | None:intergenic | 55.0% | |
| GTTTAAGCGGAGAACGGCGA+AGG | + | chr7_4:4824168-4824187 | None:intergenic | 55.0% | |
| TGGAAGATCGGAGATGTGGC+CGG | + | chr7_4:4824213-4824232 | None:intergenic | 55.0% | |
| GCAGCTGCTGCTCTTAATGG+AGG | - | chr7_4:4824522-4824541 | Msa1136400:intron | 55.0% | |
| GCTGTGTCAACGTGTCAGTC+TGG | + | chr7_4:4824717-4824736 | None:intergenic | 55.0% | |
| CGTCAGACATGCCTAATCCG+AGG | - | chr7_4:4824820-4824839 | Msa1136400:intron | 55.0% | |
| GCATGGACACTCCTCGGATT+AGG | + | chr7_4:4824834-4824853 | None:intergenic | 55.0% | |
| ! | GTCTCAATGCGCTTTTGCCG+CGG | - | chr7_4:4825282-4825301 | Msa1136400:intron | 55.0% |
| ! | TGCGCTTTTGCCGCGGAATT+TGG | - | chr7_4:4825289-4825308 | Msa1136400:intron | 55.0% |
| ! | GCGCTTTTGCCGCGGAATTT+GGG | - | chr7_4:4825290-4825309 | Msa1136400:intron | 55.0% |
| GTAACATGAACCCCTCTGCC+CGG | - | chr7_4:4827103-4827122 | Msa1136400:intron | 55.0% | |
| TAACATGAACCCCTCTGCCC+GGG | - | chr7_4:4827104-4827123 | Msa1136400:intron | 55.0% | |
| ACAACATATCCCGGGCAGAG+GGG | + | chr7_4:4827116-4827135 | None:intergenic | 55.0% | |
| CAACAACATATCCCGGGCAG+AGG | + | chr7_4:4827118-4827137 | None:intergenic | 55.0% | |
| CTCTGCCCGGGATATGTTGT+TGG | - | chr7_4:4827116-4827135 | Msa1136400:intron | 55.0% | |
| TAGCACCATTGTCGTGGTCC+TGG | - | chr7_4:4829182-4829201 | Msa1136400:five_prime_UTR | 55.0% | |
| TGCTGCCGTCAATACGCACG+TGG | + | chr7_4:4823995-4824014 | None:intergenic | 60.0% | |
| AGCGGAGAACGGCGAAGGAA+CGG | + | chr7_4:4824163-4824182 | None:intergenic | 60.0% | |
| CCGGAGGTTGTTGAGATCGC+CGG | + | chr7_4:4824194-4824213 | None:intergenic | 60.0% | |
| CCGGCGATCTCAACAACCTC+CGG | - | chr7_4:4824191-4824210 | Msa1136400:three_prime_UTR | 60.0% | |
| AAGATCGGAGATGTGGCCGG+AGG | + | chr7_4:4824210-4824229 | None:intergenic | 60.0% | |
| GGAGAACGGCGAAGGAACGG+TGG | + | chr7_4:4824160-4824179 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 4823974 | 4829652 | 4823974 | ID=Msa1136400;Name=Msa1136400 |
| chr7_4 | mRNA | 4823974 | 4829652 | 4823974 | ID=Msa1136400-mRNA-1;Parent=Msa1136400;Name=Msa1136400-mRNA-1;_AED=0.04;_eAED=0.04;_QI=346|1|1|1|0.66|0.71|7|404|221 |
| chr7_4 | exon | 4823974 | 4824530 | 4823974 | ID=Msa1136400-mRNA-1:exon:1281;Parent=Msa1136400-mRNA-1 |
| chr7_4 | exon | 4824905 | 4825075 | 4824905 | ID=Msa1136400-mRNA-1:exon:1280;Parent=Msa1136400-mRNA-1 |
| chr7_4 | exon | 4826462 | 4826650 | 4826462 | ID=Msa1136400-mRNA-1:exon:1279;Parent=Msa1136400-mRNA-1 |
| chr7_4 | exon | 4826741 | 4826799 | 4826741 | ID=Msa1136400-mRNA-1:exon:1278;Parent=Msa1136400-mRNA-1 |
| chr7_4 | exon | 4829083 | 4829207 | 4829083 | ID=Msa1136400-mRNA-1:exon:1277;Parent=Msa1136400-mRNA-1 |
| chr7_4 | exon | 4829310 | 4829481 | 4829310 | ID=Msa1136400-mRNA-1:exon:1276;Parent=Msa1136400-mRNA-1 |
| chr7_4 | exon | 4829510 | 4829652 | 4829510 | ID=Msa1136400-mRNA-1:exon:1275;Parent=Msa1136400-mRNA-1 |
| chr7_4 | five_prime_UTR | 4829510 | 4829652 | 4829510 | ID=Msa1136400-mRNA-1:five_prime_utr;Parent=Msa1136400-mRNA-1 |
| chr7_4 | five_prime_UTR | 4829310 | 4829481 | 4829310 | ID=Msa1136400-mRNA-1:five_prime_utr;Parent=Msa1136400-mRNA-1 |
| chr7_4 | five_prime_UTR | 4829177 | 4829207 | 4829177 | ID=Msa1136400-mRNA-1:five_prime_utr;Parent=Msa1136400-mRNA-1 |
| chr7_4 | CDS | 4829083 | 4829176 | 4829083 | ID=Msa1136400-mRNA-1:cds;Parent=Msa1136400-mRNA-1 |
| chr7_4 | CDS | 4826741 | 4826799 | 4826741 | ID=Msa1136400-mRNA-1:cds;Parent=Msa1136400-mRNA-1 |
| chr7_4 | CDS | 4826462 | 4826650 | 4826462 | ID=Msa1136400-mRNA-1:cds;Parent=Msa1136400-mRNA-1 |
| chr7_4 | CDS | 4824905 | 4825075 | 4824905 | ID=Msa1136400-mRNA-1:cds;Parent=Msa1136400-mRNA-1 |
| chr7_4 | CDS | 4824378 | 4824530 | 4824378 | ID=Msa1136400-mRNA-1:cds;Parent=Msa1136400-mRNA-1 |
| chr7_4 | three_prime_UTR | 4823974 | 4824377 | 4823974 | ID=Msa1136400-mRNA-1:three_prime_utr;Parent=Msa1136400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
