AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1141170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1141170 MtrunA17_Chr7g0224011 96.216 370 14 0 1 370 189 558 0.0 728
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1141170 AT3G26950.1 64.865 370 123 3 1 367 181 546 2.55e-173 494

Find 120 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTAGATGTTGACTCTTTA+TGG 0.032949 7_4:+14228329 None:intergenic
TTCAAAATTATTGTAATTCT+AGG 0.160224 7_4:-14225798 Msa1141170:CDS
GGATCTCAACCGAATGTATT+TGG 0.196389 7_4:-14229776 Msa1141170:CDS
GCTAGATATGCCGTTGTTTC+CGG 0.227293 7_4:-14227307 Msa1141170:CDS
GCAGCAGTCAATTGGGTTAT+TGG 0.249999 7_4:-14229710 Msa1141170:CDS
AATGGTTGTGAAAGCATATA+TGG 0.250271 7_4:-14230219 Msa1141170:CDS
AAGACTGCCGAGGCAGGTTT+TGG 0.260908 7_4:-14231025 Msa1141170:five_prime_UTR
CAGGTTGGTGGGATGGTCTT+TGG 0.261603 7_4:-14225906 Msa1141170:CDS
CAAGTGCTTTATTTCTTTCA+TGG 0.263759 7_4:+14230251 None:intergenic
TAGGTCCATAAGAGCTTTGC+AGG 0.276699 7_4:-14228376 Msa1141170:CDS
CACATATAATTTGTAGTGTT+TGG 0.283120 7_4:-14225755 Msa1141170:exon
TGCAGCCTGCAAAGCTCTTA+TGG 0.283860 7_4:+14228371 None:intergenic
AAACATGTCCCCAACCAATT+TGG 0.287916 7_4:+14226001 None:intergenic
GATGGATTAAAGAACCAAAT+TGG 0.309062 7_4:-14226015 Msa1141170:CDS
TTTGGTGACCCGCAAGTTCT+TGG 0.326404 7_4:-14229797 Msa1141170:CDS
AAGCACTTGTGGAGACTAAA+TGG 0.336894 7_4:-14230237 Msa1141170:CDS
CGTTTAATATCCCTTGGAAT+TGG 0.346354 7_4:+14225877 None:intergenic
TGTAGACATGGATTTGTTCT+TGG 0.347121 7_4:-14231049 Msa1141170:five_prime_UTR
TTTCAGGTGCTTCAAGAGTC+AGG 0.358329 7_4:-14231093 Msa1141170:five_prime_UTR
ATTGGCCAAACCAGGCATAT+TGG 0.359801 7_4:-14230938 Msa1141170:intron
TCCATGTCTACAAAACTTAT+CGG 0.363206 7_4:+14231060 None:intergenic
CGCATATGCAACGAGATATC+AGG 0.364361 7_4:+14229674 None:intergenic
CTCTGCAAATTCACTTATGT+TGG 0.373826 7_4:+14228248 None:intergenic
TATGTTGGGCGCAATACTTT+TGG 0.377247 7_4:+14228263 None:intergenic
GGTGTTCAACTATCTGGTTT+TGG 0.388500 7_4:-14225841 Msa1141170:CDS
TGAATGCACATTGATTGTTT+TGG 0.390130 7_4:+14225944 None:intergenic
ATCTACAAAAGCAACCCATC+TGG 0.393423 7_4:+14227348 None:intergenic
ATTAAAGAACCAAATTGGTT+GGG 0.394098 7_4:-14226010 Msa1141170:CDS
CAAATGTTCTCTGCAGCAAT+TGG 0.396131 7_4:-14230149 Msa1141170:CDS
AAATTGGTTGGGGACATGTT+TGG 0.397644 7_4:-14225999 Msa1141170:CDS
TTAAACCGGTCCTTGATCAT+TGG 0.418509 7_4:-14230956 Msa1141170:five_prime_UTR
CTTTATTTCTTTCATGGTAA+AGG 0.421242 7_4:+14230257 None:intergenic
CCATGTCTACAAAACTTATC+GGG 0.422761 7_4:+14231061 None:intergenic
CACTTCTCCCACCAGGTTGG+TGG 0.422998 7_4:-14225918 Msa1141170:CDS
AGGTTGAGGCAGCAGTCAAT+TGG 0.424274 7_4:-14229718 Msa1141170:CDS
TTTCATGGTAAAGGTAAAGT+TGG 0.425745 7_4:+14230266 None:intergenic
CTGGCTGCAGCAAACAATCT+AGG 0.433798 7_4:-14227238 Msa1141170:intron
CAGAGAACATTTGATTGAGC+TGG 0.436699 7_4:+14230159 None:intergenic
GACAACATCAACAACACTTC+AGG 0.438771 7_4:-14226084 Msa1141170:CDS
GTTGAGATCCAAGAACTTGC+GGG 0.439408 7_4:+14229789 None:intergenic
GATTAAAGAACCAAATTGGT+TGG 0.440420 7_4:-14226011 Msa1141170:CDS
CAAAGTCAGATTTCAGAGTA+AGG 0.442093 7_4:-14227387 Msa1141170:CDS
AGTGGGAACAACCTATCATT+TGG 0.442322 7_4:-14230122 Msa1141170:intron
GTGTCACATTACCAAATGAT+AGG 0.448025 7_4:+14230111 None:intergenic
AAGAACCAATATGCCTGGTT+TGG 0.448277 7_4:+14230933 None:intergenic
TGCTCAGTTAATTGCTGCCC+TGG 0.448330 7_4:-14227257 Msa1141170:CDS
CTTGGAAAGACTGCCGAGGC+AGG 0.451301 7_4:-14231031 Msa1141170:five_prime_UTR
CTCCCACCAGGTTGGTGGGA+TGG 0.451495 7_4:-14225913 Msa1141170:CDS
CTAGATTGTTTGCTGCAGCC+AGG 0.455933 7_4:+14227239 None:intergenic
GTCAATTGGGTTATTGGTGG+CGG 0.463346 7_4:-14229704 Msa1141170:CDS
GAAAGACGTTTAATATCCCT+TGG 0.465168 7_4:+14225871 None:intergenic
TCAATTGGGTTATTGGTGGC+GGG 0.465978 7_4:-14229703 Msa1141170:CDS
AAGCATATATGGGAGGAAAC+TGG 0.476925 7_4:-14230208 Msa1141170:CDS
TCTGCAAATTCACTTATGTT+GGG 0.479746 7_4:+14228249 None:intergenic
TAAGAAATGTAATCCTGAAA+AGG 0.480996 7_4:+14230291 None:intergenic
CGCTGAGTATAATGTTAAAC+CGG 0.481044 7_4:-14230970 Msa1141170:five_prime_UTR
CTTACTCTGAAATCTGACTT+TGG 0.481131 7_4:+14227388 None:intergenic
AAGCAGCAACCTTCATTTGA+GGG 0.482272 7_4:+14229828 None:intergenic
GGTTGAGGCAGCAGTCAATT+GGG 0.485494 7_4:-14229717 Msa1141170:CDS
CTGGGGTCCAGCACCCAGAT+GGG 0.490768 7_4:-14227362 Msa1141170:CDS
ACTGGGGTCCAGCACCCAGA+TGG 0.492875 7_4:-14227363 Msa1141170:CDS
AAAGCAACCCATCTGGGTGC+TGG 0.493529 7_4:+14227355 None:intergenic
TCTCATATCGCCTTCAAAAG+AGG 0.496271 7_4:-14229738 Msa1141170:CDS
CAGATTTCAGAGTAAGGGAC+TGG 0.498099 7_4:-14227381 Msa1141170:CDS
CAAAGTAATCTATTATCAGA+TGG 0.503608 7_4:-14226033 Msa1141170:CDS
ATGGGAGGAAACTGGTTATG+AGG 0.504188 7_4:-14230200 Msa1141170:CDS
AAAGCAGCAACCTTCATTTG+AGG 0.506093 7_4:+14229827 None:intergenic
TTCATTCCCAAAACCTGCCT+CGG 0.507005 7_4:+14231018 None:intergenic
TAGATTGTTTGCTGCAGCCA+GGG 0.508597 7_4:+14227240 None:intergenic
GACAGCATGAACGTGTGAAT+AGG 0.509135 7_4:-14231175 None:intergenic
TTCACTCCACTTCTCCCACC+AGG 0.509695 7_4:-14225925 Msa1141170:CDS
TGGGAAAGAACCAATATGCC+TGG 0.511658 7_4:+14230928 None:intergenic
ATGAGCTCTCCAAATACATT+CGG 0.513049 7_4:+14229767 None:intergenic
ACTTCTCCCACCAGGTTGGT+GGG 0.514074 7_4:-14225917 Msa1141170:CDS
TTTGATTATGAAAAGTTCAA+AGG 0.514322 7_4:-14227430 Msa1141170:CDS
CCTGGTTTGGCCAATGATCA+AGG 0.514840 7_4:+14230946 None:intergenic
CCTTGATCATTGGCCAAACC+AGG 0.516262 7_4:-14230946 Msa1141170:five_prime_UTR
TCCAACACGCCTATGTGCTC+CGG 0.516619 7_4:+14227288 None:intergenic
CATCTGATAATAGATTACTT+TGG 0.525486 7_4:+14226034 None:intergenic
TCTGACACTACAACAACCTT+CGG 0.530677 7_4:+14228300 None:intergenic
GAATATACACCCTCAAATGA+AGG 0.530949 7_4:-14229837 Msa1141170:CDS
TTCAGGTGCTTCAAGAGTCA+GGG 0.532308 7_4:-14231092 Msa1141170:five_prime_UTR
CTCCACTTCTCCCACCAGGT+TGG 0.532338 7_4:-14225921 Msa1141170:CDS
TGAAAGAAATAAAGCACTTG+TGG 0.532392 7_4:-14230248 Msa1141170:CDS
GCAGTCAATTGGGTTATTGG+TGG 0.535970 7_4:-14229707 Msa1141170:CDS
ATATGCGGATGCAAACGAAC+AGG 0.536428 7_4:-14229658 Msa1141170:intron
CAAAGACCATCCCACCAACC+TGG 0.546845 7_4:+14225907 None:intergenic
TCTACAAAAGCAACCCATCT+GGG 0.549616 7_4:+14227349 None:intergenic
TTAAAGAACCAAATTGGTTG+GGG 0.551094 7_4:-14226009 Msa1141170:CDS
TTTGGCAATCACCAATTCCA+AGG 0.552371 7_4:-14225888 Msa1141170:CDS
ATCGCCTTCAAAAGAGGTTG+AGG 0.553824 7_4:-14229732 Msa1141170:CDS
CACCAACCTGGTGGGAGAAG+TGG 0.554754 7_4:+14225919 None:intergenic
AGATTTCAGAGTAAGGGACT+GGG 0.555594 7_4:-14227380 Msa1141170:CDS
TTTGGCCAATGATCAAGGAC+CGG 0.558581 7_4:+14230951 None:intergenic
CATGTTTGGAACAGATATGC+AGG 0.562293 7_4:-14225985 Msa1141170:CDS
TCCGGAGCACATAGGCGTGT+TGG 0.567183 7_4:-14227289 Msa1141170:CDS
ATGGTTGTGAAAGCATATAT+GGG 0.567367 7_4:-14230218 Msa1141170:CDS
GGTTGAGATCCAAGAACTTG+CGG 0.568750 7_4:+14229788 None:intergenic
TCTGCAGCAATTGGAAGGAG+TGG 0.575828 7_4:-14230140 Msa1141170:CDS
CTGCAGCAATTGGAAGGAGT+GGG 0.576552 7_4:-14230139 Msa1141170:CDS
TGTTCTCTGCAGCAATTGGA+AGG 0.584828 7_4:-14230145 Msa1141170:CDS
CTGATATCTCGTTGCATATG+CGG 0.586964 7_4:-14229673 Msa1141170:CDS
AAAGTCAGATTTCAGAGTAA+GGG 0.596213 7_4:-14227386 Msa1141170:CDS
GAATAGGTATAGTGTGCGTA+CGG 0.608056 7_4:-14231159 Msa1141170:five_prime_UTR
CAATTGGGTTATTGGTGGCG+GGG 0.611835 7_4:-14229702 Msa1141170:CDS
CATGTCTACAAAACTTATCG+GGG 0.616990 7_4:+14231062 None:intergenic
ACATCTAATGTCAAGACCGA+AGG 0.618997 7_4:-14228316 Msa1141170:CDS
GACCATCCCACCAACCTGGT+GGG 0.629495 7_4:+14225911 None:intergenic
TTGGCAATCACCAATTCCAA+GGG 0.632523 7_4:-14225887 Msa1141170:CDS
CCTATGTGCTCCGGAAACAA+CGG 0.635661 7_4:+14227297 None:intergenic
TCAAGGAACTAATGATGCTG+TGG 0.641951 7_4:-14229879 Msa1141170:CDS
AGACCATCCCACCAACCTGG+TGG 0.642038 7_4:+14225910 None:intergenic
GGCAGCAATTAACTGAGCAT+AGG 0.651084 7_4:+14227261 None:intergenic
CCGTTGTTTCCGGAGCACAT+AGG 0.652128 7_4:-14227297 Msa1141170:CDS
ATGTCTACAAAACTTATCGG+GGG 0.654125 7_4:+14231063 None:intergenic
GATTTCAGAGTAAGGGACTG+GGG 0.664021 7_4:-14227379 Msa1141170:CDS
GTTGTGAAAGCATATATGGG+AGG 0.667621 7_4:-14230215 Msa1141170:CDS
CAACATAAGTGAATTTGCAG+AGG 0.668314 7_4:-14228247 Msa1141170:intron
TGTCTACAAAACTTATCGGG+GGG 0.686253 7_4:+14231064 None:intergenic
TGTTCTTGGAAAGACTGCCG+AGG 0.712053 7_4:-14231035 Msa1141170:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATAATTTTTGTTATTAAA+AGG + chr7_4:14227304-14227323 None:intergenic 10.0%
!! AAAAAGATTTACAATAATTA+GGG - chr7_4:14228969-14228988 Msa1141170:intron 10.0%
!! TCATAAAAATGAAAAAAGAA+AGG + chr7_4:14225956-14225975 None:intergenic 15.0%
!! TAAAAAGTGAAAAATGTTAT+CGG + chr7_4:14226890-14226909 None:intergenic 15.0%
!! AAAATGTTGAAGAAAATATT+GGG - chr7_4:14227395-14227414 Msa1141170:CDS 15.0%
!! GAAAAAGATTTACAATAATT+AGG - chr7_4:14228968-14228987 Msa1141170:intron 15.0%
!! AAAAGATTTACAATAATTAG+GGG - chr7_4:14228970-14228989 Msa1141170:intron 15.0%
!! GAAAAAAATTAAAGTTGTAT+TGG - chr7_4:14229198-14229217 Msa1141170:intron 15.0%
!! TTCAAAATTATTGTAATTCT+AGG - chr7_4:14231058-14231077 Msa1141170:five_prime_UTR 15.0%
!!! ACATTGAAATTTTTTGTTTC+AGG - chr7_4:14225747-14225766 Msa1141170:exon 20.0%
!! CTTAATAGTCAAATAATTAC+AGG + chr7_4:14226181-14226200 None:intergenic 20.0%
!!! TTTTCATGAGATTGAAATTA+AGG - chr7_4:14226241-14226260 Msa1141170:intron 20.0%
!!! ACAAAGTTTATTTGTTTTCT+TGG + chr7_4:14226839-14226858 None:intergenic 20.0%
!!! TGATTGATAGTTTCAATAAT+AGG - chr7_4:14227273-14227292 Msa1141170:CDS 20.0%
!! GAAAATGTTGAAGAAAATAT+TGG - chr7_4:14227394-14227413 Msa1141170:CDS 20.0%
!! GAAAATGAAAACATAAAACA+TGG - chr7_4:14227448-14227467 Msa1141170:intron 20.0%
!! GATGAAATCAAAATTAAACA+AGG + chr7_4:14227778-14227797 None:intergenic 20.0%
!!! ACAATTTATTTTCACTTACA+GGG + chr7_4:14227981-14228000 None:intergenic 20.0%
!!! TATAAATCAAAGAGTATGAA+AGG - chr7_4:14228135-14228154 Msa1141170:intron 20.0%
!!! TTTTTTTTTTGCATTAAGAC+TGG + chr7_4:14228711-14228730 None:intergenic 20.0%
!! TAATGTCATATTAGTTCAAA+TGG + chr7_4:14228760-14228779 None:intergenic 20.0%
!!! TTAAATTTGCTAATAACTGA+TGG - chr7_4:14228874-14228893 Msa1141170:intron 20.0%
!! TTTACAAGTTTATCTTTCAA+AGG - chr7_4:14228899-14228918 Msa1141170:intron 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG + chr7_4:14229112-14229131 None:intergenic 20.0%
!! TTTGATTATGAAAAGTTCAA+AGG - chr7_4:14229426-14229445 Msa1141170:intron 20.0%
!! TATTGTTTATCATAGTTACA+TGG - chr7_4:14229686-14229705 Msa1141170:CDS 20.0%
!! CATAAATGAAGCAAATAAAT+GGG + chr7_4:14229826-14229845 None:intergenic 20.0%
!! TCATAAATGAAGCAAATAAA+TGG + chr7_4:14229827-14229846 None:intergenic 20.0%
!!! ATTTGCTTCATTTATGATTT+TGG - chr7_4:14229830-14229849 Msa1141170:CDS 20.0%
!!! ATGTTTAATTTGTTCATTAG+AGG + chr7_4:14229979-14229998 None:intergenic 20.0%
!! TAGGTAATTTAAAAATCTTG+AGG - chr7_4:14230332-14230351 Msa1141170:intron 20.0%
!!! TTAGTTTTGATATAAAGACT+TGG - chr7_4:14230466-14230485 Msa1141170:intron 20.0%
!!! ATTAAACGTCTTTCTTTTTA+TGG - chr7_4:14230994-14231013 Msa1141170:five_prime_UTR 20.0%
! AAATGAAAAAAGAAAGGCTT+GGG + chr7_4:14225950-14225969 None:intergenic 25.0%
! AAAATGAAAAAAGAAAGGCT+TGG + chr7_4:14225951-14225970 None:intergenic 25.0%
! TTTCAAGCAACATAAAAGAA+AGG + chr7_4:14225992-14226011 None:intergenic 25.0%
!!! TTTTTTGTTGTTGTATTCCT+TGG - chr7_4:14226125-14226144 Msa1141170:intron 25.0%
!! TGAATGTTGCAAAATGATTT+TGG + chr7_4:14226209-14226228 None:intergenic 25.0%
! TAAGAAATGTAATCCTGAAA+AGG + chr7_4:14226568-14226587 None:intergenic 25.0%
!! CTTTATTTCTTTCATGGTAA+AGG + chr7_4:14226602-14226621 None:intergenic 25.0%
! AAACAACAACTAGATATGAA+TGG + chr7_4:14226798-14226817 None:intergenic 25.0%
!! GCATATGAATCTTATGTTTT+AGG - chr7_4:14226952-14226971 Msa1141170:intron 25.0%
!!! ATCTTATGTTTTAGGTTTCA+AGG - chr7_4:14226960-14226979 Msa1141170:intron 25.0%
!! CTCAATCGTAAATACTTTTA+TGG - chr7_4:14227232-14227251 Msa1141170:intron 25.0%
! TGTGGTAAATAAAATATGCA+AGG - chr7_4:14227350-14227369 Msa1141170:CDS 25.0%
! ATAAAACATGGAAAGTAACT+GGG - chr7_4:14227460-14227479 Msa1141170:intron 25.0%
! CAAAATTAAACAAGGAATCT+CGG + chr7_4:14227770-14227789 None:intergenic 25.0%
! AATGAGCTTACAAAATTCAT+GGG + chr7_4:14227952-14227971 None:intergenic 25.0%
! AAATGAGCTTACAAAATTCA+TGG + chr7_4:14227953-14227972 None:intergenic 25.0%
!!! GACAATTTATTTTCACTTAC+AGG + chr7_4:14227982-14228001 None:intergenic 25.0%
! GTTAAACAAATCAGATGAAA+AGG + chr7_4:14228433-14228452 None:intergenic 25.0%
!!! GCTATTTCTGTCTTTTTTTT+AGG - chr7_4:14228461-14228480 Msa1141170:intron 25.0%
! ACATTAGAATTAACAATCTG+AGG - chr7_4:14228774-14228793 Msa1141170:intron 25.0%
! TCAACAATAGATACTATGAT+GGG + chr7_4:14228943-14228962 None:intergenic 25.0%
! ATCAACAATAGATACTATGA+TGG + chr7_4:14228944-14228963 None:intergenic 25.0%
! AAATTGTGTGAAAGAAAAGT+TGG - chr7_4:14229149-14229168 Msa1141170:intron 25.0%
!! AAAAGTTGGAGTATTTATTG+AGG - chr7_4:14229163-14229182 Msa1141170:intron 25.0%
!! AAAGTTGGAGTATTTATTGA+GGG - chr7_4:14229164-14229183 Msa1141170:intron 25.0%
! TTCAAAGGAAAAATGTATGA+TGG - chr7_4:14229441-14229460 Msa1141170:intron 25.0%
! TAAGTCAAACAAGTAAAATC+TGG + chr7_4:14229789-14229808 None:intergenic 25.0%
!!! GTTTGACTTAAATACAGTTT+TGG - chr7_4:14229799-14229818 Msa1141170:CDS 25.0%
! TAACACTTTACTCACTTTAA+AGG - chr7_4:14230049-14230068 Msa1141170:intron 25.0%
! ACAGTGTATTACATCAAATT+TGG - chr7_4:14230160-14230179 Msa1141170:CDS 25.0%
! AAATGCTTCAGTAGTATATT+TGG + chr7_4:14230735-14230754 None:intergenic 25.0%
! CATCTGATAATAGATTACTT+TGG + chr7_4:14230825-14230844 None:intergenic 25.0%
! CAAAGTAATCTATTATCAGA+TGG - chr7_4:14230823-14230842 Msa1141170:intron 25.0%
! ATTAAAGAACCAAATTGGTT+GGG - chr7_4:14230846-14230865 Msa1141170:intron 25.0%
!! CACATATAATTTGTAGTGTT+TGG - chr7_4:14231101-14231120 Msa1141170:five_prime_UTR 25.0%
TCCATGTCTACAAAACTTAT+CGG + chr7_4:14225799-14225818 None:intergenic 30.0%
AGTTCCTTGTAGATTTAGTT+TGG - chr7_4:14226023-14226042 Msa1141170:CDS 30.0%
! TGGTGACGATTTAAGAAAAT+GGG + chr7_4:14226351-14226370 None:intergenic 30.0%
!! TTGGTGACGATTTAAGAAAA+TGG + chr7_4:14226352-14226371 None:intergenic 30.0%
TATCAACGATATACTTCTGT+AGG + chr7_4:14226421-14226440 None:intergenic 30.0%
! CTAAGACATTTAGTTCAAAC+AGG + chr7_4:14226453-14226472 None:intergenic 30.0%
TTTCATGGTAAAGGTAAAGT+TGG + chr7_4:14226593-14226612 None:intergenic 30.0%
!! CAAGTGCTTTATTTCTTTCA+TGG + chr7_4:14226608-14226627 None:intergenic 30.0%
! TGAAAGAAATAAAGCACTTG+TGG - chr7_4:14226608-14226627 Msa1141170:intron 30.0%
! AATGGTTGTGAAAGCATATA+TGG - chr7_4:14226637-14226656 Msa1141170:intron 30.0%
! ATGGTTGTGAAAGCATATAT+GGG - chr7_4:14226638-14226657 Msa1141170:intron 30.0%
!! TATCATTTGGTAATGTGACA+CGG - chr7_4:14226747-14226766 Msa1141170:intron 30.0%
ACAACTAGATATGAATGGAA+GGG + chr7_4:14226793-14226812 None:intergenic 30.0%
AACAACTAGATATGAATGGA+AGG + chr7_4:14226794-14226813 None:intergenic 30.0%
TGATGCTTGATAGAAATATG+CGG + chr7_4:14226923-14226942 None:intergenic 30.0%
!!! GTTGCTGCTTTTGATTTATT+TGG - chr7_4:14227041-14227060 Msa1141170:intron 30.0%
TAAAATATGCAAGGCAATCT+AGG - chr7_4:14227359-14227378 Msa1141170:CDS 30.0%
CATAAAACATGGAAAGTAAC+TGG - chr7_4:14227459-14227478 Msa1141170:intron 30.0%
! AATCATCGAGTCTGAAATTT+CGG + chr7_4:14227487-14227506 None:intergenic 30.0%
AGAGATAAATTAAGGATAGC+AGG + chr7_4:14227924-14227943 None:intergenic 30.0%
ATGAGCTTACAAAATTCATG+GGG + chr7_4:14227951-14227970 None:intergenic 30.0%
!! TGATTTCAAGTTGTTTGCTA+TGG - chr7_4:14228202-14228221 Msa1141170:intron 30.0%
TAACACAAAATCGACACATA+TGG + chr7_4:14228294-14228313 None:intergenic 30.0%
AAACCTATCCAGAAAAAGTT+GGG + chr7_4:14228398-14228417 None:intergenic 30.0%
!! AACTTTTTCTGGATAGGTTT+GGG - chr7_4:14228398-14228417 Msa1141170:intron 30.0%
!! CATTAGATGTTGACTCTTTA+TGG + chr7_4:14228530-14228549 None:intergenic 30.0%
TCTGCAAATTCACTTATGTT+GGG + chr7_4:14228610-14228629 None:intergenic 30.0%
! TGTGATTTATCGTCTAAGAT+GGG + chr7_4:14228646-14228665 None:intergenic 30.0%
ATGTGATTTATCGTCTAAGA+TGG + chr7_4:14228647-14228666 None:intergenic 30.0%
TTTCTTAATCTGTGTGCAAT+TGG + chr7_4:14229046-14229065 None:intergenic 30.0%
ATTGCACACAGATTAAGAAA+TGG - chr7_4:14229046-14229065 Msa1141170:intron 30.0%
GTATTTATTGAGGGTAAAGT+TGG - chr7_4:14229173-14229192 Msa1141170:intron 30.0%
!!! TGACACTCATTTTGAAACAT+AGG - chr7_4:14229267-14229286 Msa1141170:intron 30.0%
!!! GACACTCATTTTGAAACATA+GGG - chr7_4:14229268-14229287 Msa1141170:intron 30.0%
AAAGTCAGATTTCAGAGTAA+GGG - chr7_4:14229470-14229489 Msa1141170:intron 30.0%
AAAGAAACAAAAACGACCTT+AGG + chr7_4:14229663-14229682 None:intergenic 30.0%
TATGAAAAGCAGAACATCAA+GGG + chr7_4:14230027-14230046 None:intergenic 30.0%
TTTGATGTAATACACTGTCT+AGG + chr7_4:14230158-14230177 None:intergenic 30.0%
GAGACAATTCAAAAACAAGT+AGG + chr7_4:14230419-14230438 None:intergenic 30.0%
! AATAAGTTGAAACCAGCTTA+TGG + chr7_4:14230563-14230582 None:intergenic 30.0%
! ACTGTTTTCATAAGCTATCA+TGG + chr7_4:14230598-14230617 None:intergenic 30.0%
!! AGCATTTGAAATTTTTCTCC+AGG - chr7_4:14230748-14230767 Msa1141170:intron 30.0%
!! GCATTTGAAATTTTTCTCCA+GGG - chr7_4:14230749-14230768 Msa1141170:intron 30.0%
!! CATTTGAAATTTTTCTCCAG+GGG - chr7_4:14230750-14230769 Msa1141170:intron 30.0%
CTGCTTAAAAATGAAAAGCT+TGG + chr7_4:14230799-14230818 None:intergenic 30.0%
!! GATGGATTAAAGAACCAAAT+TGG - chr7_4:14230841-14230860 Msa1141170:intron 30.0%
GATTAAAGAACCAAATTGGT+TGG - chr7_4:14230845-14230864 Msa1141170:intron 30.0%
TTAAAGAACCAAATTGGTTG+GGG - chr7_4:14230847-14230866 Msa1141170:intron 30.0%
!! TTTTGGTTATGACAACTCAA+TGG + chr7_4:14230898-14230917 None:intergenic 30.0%
!! TGAATGCACATTGATTGTTT+TGG + chr7_4:14230915-14230934 None:intergenic 30.0%
! TTTTATGGTGTTCAACTATC+TGG - chr7_4:14231009-14231028 Msa1141170:five_prime_UTR 30.0%
ATGTCTACAAAACTTATCGG+GGG + chr7_4:14225796-14225815 None:intergenic 35.0%
CATGTCTACAAAACTTATCG+GGG + chr7_4:14225797-14225816 None:intergenic 35.0%
CCATGTCTACAAAACTTATC+GGG + chr7_4:14225798-14225817 None:intergenic 35.0%
! TGTAGACATGGATTTGTTCT+TGG - chr7_4:14225807-14225826 Msa1141170:CDS 35.0%
CGCTGAGTATAATGTTAAAC+CGG - chr7_4:14225886-14225905 Msa1141170:CDS 35.0%
!! TCCTTGTAGATTTAGTTTGG+TGG - chr7_4:14226026-14226045 Msa1141170:CDS 35.0%
ACCACCAAACTAAATCTACA+AGG + chr7_4:14226030-14226049 None:intergenic 35.0%
TTCCTTGGCTTATAATTGCT+TGG - chr7_4:14226140-14226159 Msa1141170:intron 35.0%
ATCCAAGCAATTATAAGCCA+AGG + chr7_4:14226145-14226164 None:intergenic 35.0%
! CTTCAAATTGATGACATGTC+CGG - chr7_4:14226283-14226302 Msa1141170:intron 35.0%
ACACTTACACACATAGACAT+TGG + chr7_4:14226371-14226390 None:intergenic 35.0%
! GACATTTAGTTCAAACAGGT+TGG + chr7_4:14226449-14226468 None:intergenic 35.0%
TCATTCTCTCATTATCGTCT+TGG - chr7_4:14226519-14226538 Msa1141170:intron 35.0%
! CAGAAGCAAATATCCTTTTC+AGG - chr7_4:14226552-14226571 Msa1141170:intron 35.0%
GTGTCACATTACCAAATGAT+AGG + chr7_4:14226748-14226767 None:intergenic 35.0%
CAACTAGATATGAATGGAAG+GGG + chr7_4:14226792-14226811 None:intergenic 35.0%
GAATATACACCCTCAAATGA+AGG - chr7_4:14227019-14227038 Msa1141170:intron 35.0%
ATGAGCTCTCCAAATACATT+CGG + chr7_4:14227092-14227111 None:intergenic 35.0%
! ATCATCGAGTCTGAAATTTC+GGG + chr7_4:14227486-14227505 None:intergenic 35.0%
TTCAGACTCGATGATTTCAT+TGG - chr7_4:14227491-14227510 Msa1141170:intron 35.0%
! GTTAGCTTCTAATATGTCGA+AGG + chr7_4:14227549-14227568 None:intergenic 35.0%
! GGAGGTATAGCAGAAAAAAT+AGG + chr7_4:14227662-14227681 None:intergenic 35.0%
TTAAAACAAGAGACGAGAAC+AGG + chr7_4:14227722-14227741 None:intergenic 35.0%
!! CACGATACTCAGCTTTAAAA+AGG + chr7_4:14227818-14227837 None:intergenic 35.0%
GGGGTCAAAGAGATAAATTA+AGG + chr7_4:14227932-14227951 None:intergenic 35.0%
!! TTACTACTGCATTGACTCTT+TGG - chr7_4:14228032-14228051 Msa1141170:intron 35.0%
CATGATTCTGATTGAAGAAG+TGG - chr7_4:14228082-14228101 Msa1141170:intron 35.0%
!! TTGAAGTGTCGACACTATAT+AGG - chr7_4:14228357-14228376 Msa1141170:CDS 35.0%
!! TGCAATATCCCAACTTTTTC+TGG - chr7_4:14228387-14228406 Msa1141170:intron 35.0%
!! TATCCCAACTTTTTCTGGAT+AGG - chr7_4:14228392-14228411 Msa1141170:intron 35.0%
CAAACCTATCCAGAAAAAGT+TGG + chr7_4:14228399-14228418 None:intergenic 35.0%
!! CAACTTTTTCTGGATAGGTT+TGG - chr7_4:14228397-14228416 Msa1141170:intron 35.0%
!! ACTTTTTCTGGATAGGTTTG+GGG - chr7_4:14228399-14228418 Msa1141170:intron 35.0%
CTCTGCAAATTCACTTATGT+TGG + chr7_4:14228611-14228630 None:intergenic 35.0%
CAACATAAGTGAATTTGCAG+AGG - chr7_4:14228609-14228628 Msa1141170:intron 35.0%
AATCCCATGATTCAGTTCAA+CGG + chr7_4:14228835-14228854 None:intergenic 35.0%
AATCATGGGATTGAGTAAGT+TGG - chr7_4:14228843-14228862 Msa1141170:intron 35.0%
!!! GACAGTCATTTTGAAATGGA+GGG + chr7_4:14229016-14229035 None:intergenic 35.0%
!! AAGCGACAGTCATTTTGAAA+TGG + chr7_4:14229020-14229039 None:intergenic 35.0%
CTCAAAGCATGTACAAACAA+AGG + chr7_4:14229394-14229413 None:intergenic 35.0%
! TGTTTGTACATGCTTTGAGT+AGG - chr7_4:14229395-14229414 Msa1141170:intron 35.0%
!! CTTACTCTGAAATCTGACTT+TGG + chr7_4:14229471-14229490 None:intergenic 35.0%
CAAAGTCAGATTTCAGAGTA+AGG - chr7_4:14229469-14229488 Msa1141170:intron 35.0%
AAAAACGACCTTAGGAACAA+AGG + chr7_4:14229655-14229674 None:intergenic 35.0%
! GGAGAGTACAGTTAGTATTA+TGG - chr7_4:14229952-14229971 Msa1141170:intron 35.0%
GTATGAAAAGCAGAACATCA+AGG + chr7_4:14230028-14230047 None:intergenic 35.0%
AAAATCAACCCCAAATCCAT+AGG + chr7_4:14230092-14230111 None:intergenic 35.0%
!! TTGATGATGTGGCACTATAT+AGG + chr7_4:14230250-14230269 None:intergenic 35.0%
ATCATCGAAATTCAGTCTCT+AGG - chr7_4:14230302-14230321 Msa1141170:five_prime_UTR 35.0%
TCATCGAAATTCAGTCTCTA+GGG - chr7_4:14230303-14230322 Msa1141170:five_prime_UTR 35.0%
!!! CTAAGCTTGTGGTTTTAGAA+AGG - chr7_4:14230356-14230375 Msa1141170:intron 35.0%
TCTTCCTGTCTTAGCTTAAT+TGG - chr7_4:14230443-14230462 Msa1141170:intron 35.0%
CTAACCAATTAAGCTAAGAC+AGG + chr7_4:14230450-14230469 None:intergenic 35.0%
CTTATGATATGTCCATAAGC+TGG - chr7_4:14230548-14230567 Msa1141170:intron 35.0%
CGTTTAATATCCCTTGGAAT+TGG + chr7_4:14230982-14231001 None:intergenic 35.0%
GAAAGACGTTTAATATCCCT+TGG + chr7_4:14230988-14231007 None:intergenic 35.0%
GAATAGGTATAGTGTGCGTA+CGG - chr7_4:14225697-14225716 Msa1141170:three_prime_UTR 40.0%
TGTCTACAAAACTTATCGGG+GGG + chr7_4:14225795-14225814 None:intergenic 40.0%
!! CCCGATAAGTTTTGTAGACA+TGG - chr7_4:14225795-14225814 Msa1141170:CDS 40.0%
! GTACAAGCTTTTATCAGCTG+CGG - chr7_4:14225863-14225882 Msa1141170:CDS 40.0%
TTAAACCGGTCCTTGATCAT+TGG - chr7_4:14225900-14225919 Msa1141170:CDS 40.0%
AAGAACCAATATGCCTGGTT+TGG + chr7_4:14225926-14225945 None:intergenic 40.0%
AGCAGAAACTCATGCTCAAA+AGG + chr7_4:14226073-14226092 None:intergenic 40.0%
AGCATGAGTTTCTGCTTCAT+AGG - chr7_4:14226077-14226096 Msa1141170:CDS 40.0%
GCATGAGTTTCTGCTTCATA+GGG - chr7_4:14226078-14226097 Msa1141170:CDS 40.0%
TACATGTATCAGTGTCGTGT+TGG + chr7_4:14226312-14226331 None:intergenic 40.0%
AAGCACTTGTGGAGACTAAA+TGG - chr7_4:14226619-14226638 Msa1141170:intron 40.0%
! GTTGTGAAAGCATATATGGG+AGG - chr7_4:14226641-14226660 Msa1141170:intron 40.0%
AAGCATATATGGGAGGAAAC+TGG - chr7_4:14226648-14226667 Msa1141170:intron 40.0%
CAGAGAACATTTGATTGAGC+TGG + chr7_4:14226700-14226719 None:intergenic 40.0%
CAAATGTTCTCTGCAGCAAT+TGG - chr7_4:14226707-14226726 Msa1141170:intron 40.0%
AGTGGGAACAACCTATCATT+TGG - chr7_4:14226734-14226753 Msa1141170:intron 40.0%
TCAAGGAACTAATGATGCTG+TGG - chr7_4:14226977-14226996 Msa1141170:intron 40.0%
AAGCAGCAACCTTCATTTGA+GGG + chr7_4:14227031-14227050 None:intergenic 40.0%
AAAGCAGCAACCTTCATTTG+AGG + chr7_4:14227032-14227051 None:intergenic 40.0%
GGATCTCAACCGAATGTATT+TGG - chr7_4:14227080-14227099 Msa1141170:intron 40.0%
TCTCATATCGCCTTCAAAAG+AGG - chr7_4:14227118-14227137 Msa1141170:intron 40.0%
CTGATATCTCGTTGCATATG+CGG - chr7_4:14227183-14227202 Msa1141170:intron 40.0%
ATTGTAACCCTGTCCTAATG+TGG - chr7_4:14227695-14227714 Msa1141170:intron 40.0%
AATCCATTGAATCTCGCAAG+TGG + chr7_4:14227853-14227872 None:intergenic 40.0%
TTAAGGATAGCAGGAGAGAA+TGG + chr7_4:14227915-14227934 None:intergenic 40.0%
TCTGATTGAAGAAGTGGCTT+AGG - chr7_4:14228088-14228107 Msa1141170:intron 40.0%
ATCCAATGCGTTCGAAAACA+TGG - chr7_4:14228172-14228191 Msa1141170:intron 40.0%
! AACCATGTTTTCGAACGCAT+TGG + chr7_4:14228177-14228196 None:intergenic 40.0%
TGTCCAACACATGTCAATGT+CGG + chr7_4:14228320-14228339 None:intergenic 40.0%
!! ATAGTGTCGACACTTCAAAC+TGG + chr7_4:14228355-14228374 None:intergenic 40.0%
ACATCTAATGTCAAGACCGA+AGG - chr7_4:14228540-14228559 Msa1141170:intron 40.0%
TCTGACACTACAACAACCTT+CGG + chr7_4:14228559-14228578 None:intergenic 40.0%
! TATGTTGGGCGCAATACTTT+TGG + chr7_4:14228596-14228615 None:intergenic 40.0%
AACCCGTTGAACTGAATCAT+GGG - chr7_4:14228829-14228848 Msa1141170:intron 40.0%
ATCCCATGATTCAGTTCAAC+GGG + chr7_4:14228834-14228853 None:intergenic 40.0%
!!! CGACAGTCATTTTGAAATGG+AGG + chr7_4:14229017-14229036 None:intergenic 40.0%
! CTTTTTGACCATGATGTGTG+AGG - chr7_4:14229331-14229350 Msa1141170:intron 40.0%
GATTGTTACTGCACTATTCG+CGG + chr7_4:14229366-14229385 None:intergenic 40.0%
AGATTTCAGAGTAAGGGACT+GGG - chr7_4:14229476-14229495 Msa1141170:intron 40.0%
TCTACAAAAGCAACCCATCT+GGG + chr7_4:14229510-14229529 None:intergenic 40.0%
ATCTACAAAAGCAACCCATC+TGG + chr7_4:14229511-14229530 None:intergenic 40.0%
TTCCACTACCTTTGTTCCTA+AGG - chr7_4:14229644-14229663 Msa1141170:intron 40.0%
AAACTGAGTTTCTCACCTAG+AGG + chr7_4:14229932-14229951 None:intergenic 40.0%
TCTAGGTGAGAAACTCAGTT+TGG - chr7_4:14229931-14229950 Msa1141170:intron 40.0%
GATGTAATACACTGTCTAGG+TGG + chr7_4:14230155-14230174 None:intergenic 40.0%
ATGATGTGGCACTATATAGG+TGG + chr7_4:14230247-14230266 None:intergenic 40.0%
!! TGGCAATTCAGTTGATGATG+TGG + chr7_4:14230261-14230280 None:intergenic 40.0%
TAACAAGTGAGATGCTCATG+TGG + chr7_4:14230281-14230300 None:intergenic 40.0%
! TCAGTCTCTAGGGAAAAAGT+AGG - chr7_4:14230313-14230332 Msa1141170:intron 40.0%
AATCTTGAGGACTAAGCTTG+TGG - chr7_4:14230345-14230364 Msa1141170:intron 40.0%
!!! GCTTGTGGTTTTAGAAAGGT+AGG - chr7_4:14230360-14230379 Msa1141170:intron 40.0%
GGATCAACATTATGCAACGA+GGG + chr7_4:14230714-14230733 None:intergenic 40.0%
TGGATCAACATTATGCAACG+AGG + chr7_4:14230715-14230734 None:intergenic 40.0%
GACAACATCAACAACACTTC+AGG - chr7_4:14230772-14230791 Msa1141170:intron 40.0%
AAACATGTCCCCAACCAATT+TGG + chr7_4:14230858-14230877 None:intergenic 40.0%
AAATTGGTTGGGGACATGTT+TGG - chr7_4:14230857-14230876 Msa1141170:intron 40.0%
! CATGTTTGGAACAGATATGC+AGG - chr7_4:14230871-14230890 Msa1141170:intron 40.0%
TTTGGCAATCACCAATTCCA+AGG - chr7_4:14230968-14230987 Msa1141170:five_prime_UTR 40.0%
TTGGCAATCACCAATTCCAA+GGG - chr7_4:14230969-14230988 Msa1141170:five_prime_UTR 40.0%
!! GGTGTTCAACTATCTGGTTT+TGG - chr7_4:14231015-14231034 Msa1141170:five_prime_UTR 40.0%
! TTTCAGGTGCTTCAAGAGTC+AGG - chr7_4:14225763-14225782 Msa1141170:CDS 45.0%
TTCAGGTGCTTCAAGAGTCA+GGG - chr7_4:14225764-14225783 Msa1141170:CDS 45.0%
TTCATTCCCAAAACCTGCCT+CGG + chr7_4:14225841-14225860 None:intergenic 45.0%
TTTGGCCAATGATCAAGGAC+CGG + chr7_4:14225908-14225927 None:intergenic 45.0%
ATTGGCCAAACCAGGCATAT+TGG - chr7_4:14225918-14225937 Msa1141170:CDS 45.0%
TGGGAAAGAACCAATATGCC+TGG + chr7_4:14225931-14225950 None:intergenic 45.0%
! ATGTGTGTAAGTGTCGTGTC+AGG - chr7_4:14226377-14226396 Msa1141170:intron 45.0%
! TGTCAGGTGTTCGTGTTACT+GGG - chr7_4:14226393-14226412 Msa1141170:intron 45.0%
ATGGGAGGAAACTGGTTATG+AGG - chr7_4:14226656-14226675 Msa1141170:intron 45.0%
TGTTCTCTGCAGCAATTGGA+AGG - chr7_4:14226711-14226730 Msa1141170:intron 45.0%
GTTGAGATCCAAGAACTTGC+GGG + chr7_4:14227070-14227089 None:intergenic 45.0%
GGTTGAGATCCAAGAACTTG+CGG + chr7_4:14227071-14227090 None:intergenic 45.0%
ATCGCCTTCAAAAGAGGTTG+AGG - chr7_4:14227124-14227143 Msa1141170:intron 45.0%
GCAGCAGTCAATTGGGTTAT+TGG - chr7_4:14227146-14227165 Msa1141170:intron 45.0%
GCAGTCAATTGGGTTATTGG+TGG - chr7_4:14227149-14227168 Msa1141170:intron 45.0%
GTCAATTGGGTTATTGGTGG+CGG - chr7_4:14227152-14227171 Msa1141170:intron 45.0%
! TCAATTGGGTTATTGGTGGC+GGG - chr7_4:14227153-14227172 Msa1141170:intron 45.0%
CGCATATGCAACGAGATATC+AGG + chr7_4:14227185-14227204 None:intergenic 45.0%
ATATGCGGATGCAAACGAAC+AGG - chr7_4:14227198-14227217 Msa1141170:intron 45.0%
CCACAATTCTTCACTACACG+AGG + chr7_4:14227335-14227354 None:intergenic 45.0%
CCTCGTGTAGTGAAGAATTG+TGG - chr7_4:14227332-14227351 Msa1141170:CDS 45.0%
GTTACAATTCCCATGGAGAC+TGG + chr7_4:14227683-14227702 None:intergenic 45.0%
AACAGGACCACATTAGGACA+GGG + chr7_4:14227705-14227724 None:intergenic 45.0%
! CTCGCAAGTGGTGTTAGAAA+GGG + chr7_4:14227841-14227860 None:intergenic 45.0%
! TCTCGCAAGTGGTGTTAGAA+AGG + chr7_4:14227842-14227861 None:intergenic 45.0%
ACACCACTTGCGAGATTCAA+TGG - chr7_4:14227847-14227866 Msa1141170:intron 45.0%
!! ACTGCATTGACTCTTTGGTG+TGG - chr7_4:14228037-14228056 Msa1141170:intron 45.0%
!! CTGCATTGACTCTTTGGTGT+GGG - chr7_4:14228038-14228057 Msa1141170:intron 45.0%
!! TGCATTGACTCTTTGGTGTG+GGG - chr7_4:14228039-14228058 Msa1141170:intron 45.0%
CGAACGCATTGGATGTGAAA+GGG + chr7_4:14228166-14228185 None:intergenic 45.0%
TCGAACGCATTGGATGTGAA+AGG + chr7_4:14228167-14228186 None:intergenic 45.0%
TGGAGCACAAACACCAAACA+CGG - chr7_4:14228222-14228241 Msa1141170:intron 45.0%
TCTAGTGTCAGTACCGTGTT+TGG + chr7_4:14228238-14228257 None:intergenic 45.0%
TGTCCGACATTGACATGTGT+TGG - chr7_4:14228314-14228333 Msa1141170:CDS 45.0%
CTTCAAACTGGACATGTGTC+TGG + chr7_4:14228343-14228362 None:intergenic 45.0%
TAGGTCCATAAGAGCTTTGC+AGG - chr7_4:14228480-14228499 Msa1141170:intron 45.0%
! GCAATACTTTTGGCAAGGGA+AGG + chr7_4:14228586-14228605 None:intergenic 45.0%
! CAACGGGTTCCTATACGTAA+GGG + chr7_4:14228818-14228837 None:intergenic 45.0%
! TCAACGGGTTCCTATACGTA+AGG + chr7_4:14228819-14228838 None:intergenic 45.0%
GAACCCGTTGAACTGAATCA+TGG - chr7_4:14228828-14228847 Msa1141170:intron 45.0%
CAGATTTCAGAGTAAGGGAC+TGG - chr7_4:14229475-14229494 Msa1141170:intron 45.0%
GATTTCAGAGTAAGGGACTG+GGG - chr7_4:14229477-14229496 Msa1141170:intron 45.0%
! GCTAGATATGCCGTTGTTTC+CGG - chr7_4:14229549-14229568 Msa1141170:intron 45.0%
GGCAGCAATTAACTGAGCAT+AGG + chr7_4:14229598-14229617 None:intergenic 45.0%
! TAGATTGTTTGCTGCAGCCA+GGG + chr7_4:14229619-14229638 None:intergenic 45.0%
GACCTTAGGAACAAAGGTAG+TGG + chr7_4:14229649-14229668 None:intergenic 45.0%
TCCATAGGCGGAGAAGAATT+CGG + chr7_4:14230077-14230096 None:intergenic 45.0%
TTCTTCTCCGCCTATGGATT+TGG - chr7_4:14230079-14230098 Msa1141170:intron 45.0%
TCTTCTCCGCCTATGGATTT+GGG - chr7_4:14230080-14230099 Msa1141170:intron 45.0%
ATCAACCCCAAATCCATAGG+CGG + chr7_4:14230089-14230108 None:intergenic 45.0%
CCAAGTGGAGCTTATGAGAA+TGG + chr7_4:14230511-14230530 None:intergenic 45.0%
CCATTCTCATAAGCTCCACT+TGG - chr7_4:14230508-14230527 Msa1141170:intron 45.0%
TGTTCTTGGAAAGACTGCCG+AGG - chr7_4:14225821-14225840 Msa1141170:CDS 50.0%
!! CCTGGTTTGGCCAATGATCA+AGG + chr7_4:14225913-14225932 None:intergenic 50.0%
CCTTGATCATTGGCCAAACC+AGG - chr7_4:14225910-14225929 Msa1141170:CDS 50.0%
! ATCAGTGTCGTGTTGGTGTC+CGG + chr7_4:14226305-14226324 None:intergenic 50.0%
GTGTCAGGTGTTCGTGTTAC+TGG - chr7_4:14226392-14226411 Msa1141170:intron 50.0%
TCTGCAGCAATTGGAAGGAG+TGG - chr7_4:14226716-14226735 Msa1141170:intron 50.0%
CTGCAGCAATTGGAAGGAGT+GGG - chr7_4:14226717-14226736 Msa1141170:intron 50.0%
! TTTGGTGACCCGCAAGTTCT+TGG - chr7_4:14227059-14227078 Msa1141170:intron 50.0%
! GCTGCCTCAACCTCTTTTGA+AGG + chr7_4:14227131-14227150 None:intergenic 50.0%
AGGTTGAGGCAGCAGTCAAT+TGG - chr7_4:14227138-14227157 Msa1141170:intron 50.0%
GGTTGAGGCAGCAGTCAATT+GGG - chr7_4:14227139-14227158 Msa1141170:intron 50.0%
!! CAATTGGGTTATTGGTGGCG+GGG - chr7_4:14227154-14227173 Msa1141170:intron 50.0%
CTTCACTACACGAGGCAACA+AGG + chr7_4:14227327-14227346 None:intergenic 50.0%
TGCTATACCTCCAGTCTCCA+TGG - chr7_4:14227670-14227689 Msa1141170:intron 50.0%
GCTATACCTCCAGTCTCCAT+GGG - chr7_4:14227671-14227690 Msa1141170:intron 50.0%
ACAATTCCCATGGAGACTGG+AGG + chr7_4:14227680-14227699 None:intergenic 50.0%
GGACAGGGTTACAATTCCCA+TGG + chr7_4:14227690-14227709 None:intergenic 50.0%
GAACAGGACCACATTAGGAC+AGG + chr7_4:14227706-14227725 None:intergenic 50.0%
GACGAGAACAGGACCACATT+AGG + chr7_4:14227711-14227730 None:intergenic 50.0%
CAAGGAATCTCGGTAGCTGA+TGG + chr7_4:14227760-14227779 None:intergenic 50.0%
!! GCATTGACTCTTTGGTGTGG+GGG - chr7_4:14228040-14228059 Msa1141170:intron 50.0%
TGCAGCCTGCAAAGCTCTTA+TGG + chr7_4:14228488-14228507 None:intergenic 50.0%
! GGGCGCAATACTTTTGGCAA+GGG + chr7_4:14228590-14228609 None:intergenic 50.0%
! TGGGCGCAATACTTTTGGCA+AGG + chr7_4:14228591-14228610 None:intergenic 50.0%
CTACCTCCTCCCTTACGTAT+AGG - chr7_4:14228806-14228825 Msa1141170:intron 50.0%
GTTCCTATACGTAAGGGAGG+AGG + chr7_4:14228812-14228831 None:intergenic 50.0%
CCTATGTGCTCCGGAAACAA+CGG + chr7_4:14229562-14229581 None:intergenic 50.0%
TGCTCAGTTAATTGCTGCCC+TGG - chr7_4:14229599-14229618 Msa1141170:intron 50.0%
! CTAGATTGTTTGCTGCAGCC+AGG + chr7_4:14229620-14229639 None:intergenic 50.0%
CTGGCTGCAGCAAACAATCT+AGG - chr7_4:14229618-14229637 Msa1141170:intron 50.0%
AGTTTCTCACCTAGAGGAGC+TGG + chr7_4:14229926-14229945 None:intergenic 50.0%
TCCGAATTCTTCTCCGCCTA+TGG - chr7_4:14230073-14230092 Msa1141170:intron 50.0%
CTTCTCCGCCTATGGATTTG+GGG - chr7_4:14230081-14230100 Msa1141170:intron 50.0%
CTTCCAAGTAGTCTGCCAAG+TGG + chr7_4:14230526-14230545 None:intergenic 50.0%
! GTGTTGTTGATGTTGTCCCC+TGG + chr7_4:14230769-14230788 None:intergenic 50.0%
! AAGACTGCCGAGGCAGGTTT+TGG - chr7_4:14225831-14225850 Msa1141170:CDS 55.0%
! AGACTGCCGAGGCAGGTTTT+GGG - chr7_4:14225832-14225851 Msa1141170:CDS 55.0%
CGGGTTCCTATACGTAAGGG+AGG + chr7_4:14228815-14228834 None:intergenic 55.0%
CAGCGTCACCTCACACATCA+TGG + chr7_4:14229342-14229361 None:intergenic 55.0%
AAAGCAACCCATCTGGGTGC+TGG + chr7_4:14229504-14229523 None:intergenic 55.0%
! CCGTTGTTTCCGGAGCACAT+AGG - chr7_4:14229559-14229578 Msa1141170:intron 55.0%
TCCAACACGCCTATGTGCTC+CGG + chr7_4:14229571-14229590 None:intergenic 55.0%
CCTAGAGGAGCTGGATCAAG+TGG + chr7_4:14229917-14229936 None:intergenic 55.0%
CCACTTGATCCAGCTCCTCT+AGG - chr7_4:14229914-14229933 Msa1141170:intron 55.0%
GCTCCACTTGGCAGACTACT+TGG - chr7_4:14230520-14230539 Msa1141170:intron 55.0%
TTCACTCCACTTCTCCCACC+AGG - chr7_4:14230931-14230950 Msa1141170:intron 55.0%
!! ACTTCTCCCACCAGGTTGGT+GGG - chr7_4:14230939-14230958 Msa1141170:five_prime_UTR 55.0%
CAAAGACCATCCCACCAACC+TGG + chr7_4:14230952-14230971 None:intergenic 55.0%
!! CAGGTTGGTGGGATGGTCTT+TGG - chr7_4:14230950-14230969 Msa1141170:five_prime_UTR 55.0%
CTTGGAAAGACTGCCGAGGC+AGG - chr7_4:14225825-14225844 Msa1141170:CDS 60.0%
TCCGGAGCACATAGGCGTGT+TGG - chr7_4:14229567-14229586 Msa1141170:intron 60.0%
CTCCACTTCTCCCACCAGGT+TGG - chr7_4:14230935-14230954 Msa1141170:intron 60.0%
CACCAACCTGGTGGGAGAAG+TGG + chr7_4:14230940-14230959 None:intergenic 60.0%
! CACTTCTCCCACCAGGTTGG+TGG - chr7_4:14230938-14230957 Msa1141170:intron 60.0%
GACCATCCCACCAACCTGGT+GGG + chr7_4:14230948-14230967 None:intergenic 60.0%
AGACCATCCCACCAACCTGG+TGG + chr7_4:14230949-14230968 None:intergenic 60.0%
ACTGGGGTCCAGCACCCAGA+TGG - chr7_4:14229493-14229512 Msa1141170:intron 65.0%
CTGGGGTCCAGCACCCAGAT+GGG - chr7_4:14229494-14229513 Msa1141170:intron 65.0%
!! CTCCCACCAGGTTGGTGGGA+TGG - chr7_4:14230943-14230962 Msa1141170:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 14225694 14231184 14225694 ID=Msa1141170;Name=Msa1141170
chr7_4 mRNA 14225694 14231184 14225694 ID=Msa1141170-mRNA-1;Parent=Msa1141170;Name=Msa1141170-mRNA-1;_AED=0.07;_eAED=0.07;_QI=298|1|1|1|0.8|1|6|68|370
chr7_4 exon 14225694 14226108 14225694 ID=Msa1141170-mRNA-1:exon:3331;Parent=Msa1141170-mRNA-1
chr7_4 exon 14227239 14227461 14227239 ID=Msa1141170-mRNA-1:exon:3330;Parent=Msa1141170-mRNA-1
chr7_4 exon 14228248 14228395 14228248 ID=Msa1141170-mRNA-1:exon:3329;Parent=Msa1141170-mRNA-1
chr7_4 exon 14229659 14229904 14229659 ID=Msa1141170-mRNA-1:exon:3328;Parent=Msa1141170-mRNA-1
chr7_4 exon 14230123 14230323 14230123 ID=Msa1141170-mRNA-1:exon:3327;Parent=Msa1141170-mRNA-1
chr7_4 exon 14230939 14231184 14230939 ID=Msa1141170-mRNA-1:exon:3326;Parent=Msa1141170-mRNA-1
chr7_4 five_prime_UTR 14230939 14231184 14230939 ID=Msa1141170-mRNA-1:five_prime_utr;Parent=Msa1141170-mRNA-1
chr7_4 five_prime_UTR 14230272 14230323 14230272 ID=Msa1141170-mRNA-1:five_prime_utr;Parent=Msa1141170-mRNA-1
chr7_4 CDS 14230123 14230271 14230123 ID=Msa1141170-mRNA-1:cds;Parent=Msa1141170-mRNA-1
chr7_4 CDS 14229659 14229904 14229659 ID=Msa1141170-mRNA-1:cds;Parent=Msa1141170-mRNA-1
chr7_4 CDS 14228248 14228395 14228248 ID=Msa1141170-mRNA-1:cds;Parent=Msa1141170-mRNA-1
chr7_4 CDS 14227239 14227461 14227239 ID=Msa1141170-mRNA-1:cds;Parent=Msa1141170-mRNA-1
chr7_4 CDS 14225762 14226108 14225762 ID=Msa1141170-mRNA-1:cds;Parent=Msa1141170-mRNA-1
chr7_4 three_prime_UTR 14225694 14225761 14225694 ID=Msa1141170-mRNA-1:three_prime_utr;Parent=Msa1141170-mRNA-1
Gene Sequence

>Msa1141170

ATGAAAGAAATAAAGCACTTGTGGAGACTAAATGGTTGTGAAAGCATATATGGGAGGAAACTGGTTATGAGGACTGATGATTTTGAAAAACCAGCTCAATCAAATGTTCTCTGCAGCAATTGGAAGGAGTGGGAACAACCTATCATTTGGTTTCAAGGAACTAATGATGCTGTGGCGTCTCAATTTTTCTTAAAGAATATACACCCTCAAATGAAGGTTGCTGCTTTTGATTTATTTGGTGACCCGCAAGTTCTTGGATCTCAACCGAATGTATTTGGAGAGCTCATGAGAGTTCTCATATCGCCTTCAAAAGAGGTTGAGGCAGCAGTCAATTGGGTTATTGGTGGCGGGGAGAATCCTGATATCTCGTTGCATATGCGGATGCAAACGAACAGGTCCATAAGAGCTTTGCAGGCTGCATTGCGTTGCATCAGAAAAGCCATAAAGAGTCAACATCTAATGTCAAGACCGAAGGTTGTTGTAGTGTCAGATACACCTTCCCTTGCCAAAAGTATTGCGCCCAACATAAGTGAATTTGCAGAGGTTGTTCATTTTGATTATGAAAAGTTCAAAGGAAAAATGTATGATGGTTTGCCAAAGTCAGATTTCAGAGTAAGGGACTGGGGTCCAGCACCCAGATGGGTTGCTTTTGTAGATTTTTTTCTTGCATCTCGCGCTAGATATGCCGTTGTTTCCGGAGCACATAGGCGTGTTGGAACTACCTATGCTCAGTTAATTGCTGCCCTGGCTGCAGCAAACAATCTAGGGGACAACATCAACAACACTTCAGGTCCAAGCTTTTCATTTTTAAGCAGTTTCCAAAGTAATCTATTATCAGATGGATTAAAGAACCAAATTGGTTGGGGACATGTTTGGAACAGATATGCAGGACCATTGAGTTGTCATAACCAAAACAATCAATGTGCATTCACTCCACTTCTCCCACCAGGTTGGTGGGATGGTCTTTGGCAATCACCAATTCCAAGGGATATTAAACGTCTTTCTTTTTATGGTGTTCAACTATCTGGTTTTGGTAATGTAGATACTGATTCACTTCAAAATTATTGTAATTCTAGGAAAACTGTTGTCAAAACTGTCACATATAATTTGTAG
Protein sequence

>Msa1141170

MKEIKHLWRLNGCESIYGRKLVMRTDDFEKPAQSNVLCSNWKEWEQPIIWFQGTNDAVASQFFLKNIHPQMKVAAFDLFGDPQVLGSQPNVFGELMRVLISPSKEVEAAVNWVIGGGENPDISLHMRMQTNRSIRALQAALRCIRKAIKSQHLMSRPKVVVVSDTPSLAKSIAPNISEFAEVVHFDYEKFKGKMYDGLPKSDFRVRDWGPAPRWVAFVDFFLASRARYAVVSGAHRRVGTTYAQLIAALAAANNLGDNINNTSGPSFSFLSSFQSNLLSDGLKNQIGWGHVWNRYAGPLSCHNQNNQCAFTPLLPPGWWDGLWQSPIPRDIKRLSFYGVQLSGFGNVDTDSLQNYCNSRKTVVKTVTYNL*