Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146190 | XP_013442437.2 | 78.528 | 489 | 99 | 3 | 6 | 494 | 1 | 483 | 0.0 | 752 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146190 | A0A396H2M3 | 78.675 | 483 | 98 | 2 | 6 | 488 | 1 | 478 | 0.0 | 752 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1017350 | Msa1146190 | 0.854087 | 1.554608e-61 | -8.615850e-47 |
| Msa1103180 | Msa1146190 | 0.869563 | 2.819179e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1146190 | MtrunA17_Chr7g0254771 | 78.675 | 483 | 98 | 2 | 6 | 488 | 1 | 478 | 0.0 | 752 |
| Msa1146190 | MtrunA17_Chr7g0254851 | 77.823 | 487 | 99 | 4 | 6 | 488 | 1 | 482 | 0.0 | 734 |
| Msa1146190 | MtrunA17_Chr7g0254311 | 77.931 | 435 | 87 | 4 | 6 | 436 | 1 | 430 | 0.0 | 650 |
| Msa1146190 | MtrunA17_Chr7g0256081 | 61.554 | 489 | 169 | 6 | 5 | 486 | 36 | 512 | 0.0 | 560 |
| Msa1146190 | MtrunA17_Chr6g0453821 | 57.404 | 493 | 190 | 8 | 6 | 489 | 1 | 482 | 0.0 | 522 |
| Msa1146190 | MtrunA17_Chr7g0258241 | 63.542 | 384 | 135 | 2 | 60 | 443 | 1 | 379 | 1.94e-162 | 465 |
| Msa1146190 | MtrunA17_Chr7g0260121 | 54.054 | 481 | 183 | 8 | 11 | 489 | 8 | 452 | 1.01e-154 | 452 |
| Msa1146190 | MtrunA17_Chr6g0453901 | 56.335 | 442 | 173 | 8 | 6 | 438 | 1 | 431 | 3.04e-154 | 449 |
| Msa1146190 | MtrunA17_Chr3g0079861 | 50.595 | 504 | 207 | 12 | 16 | 491 | 16 | 505 | 3.56e-148 | 437 |
| Msa1146190 | MtrunA17_Chr7g0260261 | 49.407 | 506 | 226 | 10 | 6 | 489 | 3 | 500 | 3.92e-146 | 432 |
| Msa1146190 | MtrunA17_Chr7g0266931 | 66.770 | 322 | 93 | 2 | 3 | 314 | 24 | 341 | 6.50e-139 | 404 |
| Msa1146190 | MtrunA17_Chr6g0478831 | 85.393 | 178 | 22 | 1 | 6 | 183 | 1 | 174 | 3.65e-105 | 311 |
| Msa1146190 | MtrunA17_Chr7g0267251 | 71.845 | 206 | 58 | 0 | 281 | 486 | 1 | 206 | 1.49e-99 | 301 |
| Msa1146190 | MtrunA17_Chr2g0293781 | 44.301 | 386 | 152 | 8 | 62 | 444 | 4 | 329 | 9.03e-82 | 257 |
| Msa1146190 | MtrunA17_Chr7g0260111 | 66.667 | 177 | 53 | 3 | 10 | 184 | 6 | 178 | 5.17e-67 | 219 |
| Msa1146190 | MtrunA17_Chr2g0312391 | 43.234 | 303 | 129 | 9 | 10 | 287 | 13 | 297 | 1.50e-58 | 196 |
| Msa1146190 | MtrunA17_Chr7g0266941 | 62.416 | 149 | 55 | 1 | 339 | 486 | 2 | 150 | 9.99e-55 | 184 |
| Msa1146190 | MtrunA17_Chr7g0271091 | 84.375 | 96 | 10 | 1 | 6 | 101 | 1 | 91 | 3.30e-48 | 161 |
| Msa1146190 | MtrunA17_Chr7g0267241 | 78.082 | 73 | 10 | 1 | 55 | 127 | 15 | 81 | 1.71e-31 | 116 |
| Msa1146190 | MtrunA17_Chr7g0273381 | 33.878 | 245 | 143 | 5 | 14 | 244 | 6 | 245 | 1.28e-29 | 121 |
| Msa1146190 | MtrunA17_Chr7g0275031 | 30.693 | 303 | 175 | 11 | 14 | 287 | 6 | 302 | 3.29e-29 | 120 |
| Msa1146190 | MtrunA17_Chr7g0274761 | 32.500 | 240 | 146 | 5 | 14 | 237 | 6 | 245 | 2.07e-28 | 113 |
| Msa1146190 | MtrunA17_Chr5g0442431 | 30.675 | 163 | 105 | 4 | 87 | 244 | 5 | 164 | 1.36e-14 | 71.6 |
| Msa1146190 | MtrunA17_Chr2g0312381 | 41.837 | 98 | 56 | 1 | 389 | 486 | 2 | 98 | 1.03e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 159 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACAAATGACTCCTATTT+AGG | 0.064410 | 7_4:-23330322 | Msa1146190:three_prime_UTR |
| TTTAAAGTTAATAAATATTT+TGG | 0.141736 | 7_4:+23330346 | None:intergenic |
| TTTGCGGGTTCCATTGGATT+TGG | 0.254296 | 7_4:-23329505 | Msa1146190:three_prime_UTR |
| TTACTTTATTAAGCTATTAT+AGG | 0.256195 | 7_4:-23329694 | Msa1146190:three_prime_UTR |
| ATCCTAGTATGGACTTCTTT+TGG | 0.256605 | 7_4:-23330572 | Msa1146190:CDS |
| GATGAACCCAGGGACTTCTT+TGG | 0.257943 | 7_4:-23331525 | Msa1146190:CDS |
| CAAGTTAGCTTTGAAGGATT+TGG | 0.266323 | 7_4:-23331982 | Msa1146190:CDS |
| GGATTCACGAATGGGGATTA+AGG | 0.267329 | 7_4:-23331932 | Msa1146190:CDS |
| TGGTTAGAACATGGGTAAAA+TGG | 0.270719 | 7_4:-23329846 | Msa1146190:three_prime_UTR |
| TTATCCAAGTTTAGCTTTAG+AGG | 0.274611 | 7_4:-23331216 | Msa1146190:CDS |
| TTACAAATGACTCCTATTTA+GGG | 0.286665 | 7_4:-23330321 | Msa1146190:three_prime_UTR |
| TATTAAGCTATTATAGGTTT+AGG | 0.290832 | 7_4:-23329688 | Msa1146190:three_prime_UTR |
| TATGTGCAAGCAGTTCTTAA+AGG | 0.310348 | 7_4:+23331053 | None:intergenic |
| CAATTTATGCTCCATTATAA+AGG | 0.315376 | 7_4:-23331789 | Msa1146190:CDS |
| GGCACCCTTGGCAATTCCTT+TGG | 0.321388 | 7_4:+23331692 | None:intergenic |
| TTCAATATGTTTGGCACCCT+TGG | 0.323705 | 7_4:+23331680 | None:intergenic |
| TTGCGGGTTCCATTGGATTT+GGG | 0.329456 | 7_4:-23329504 | Msa1146190:three_prime_UTR |
| CCATTCGTGAATCCATTGTT+TGG | 0.334005 | 7_4:+23331941 | None:intergenic |
| CATAAATGCGGTTGCGGGGC+TGG | 0.337500 | 7_4:-23329588 | Msa1146190:three_prime_UTR |
| AGGGTAGAACCCAGCTTTAA+TGG | 0.342438 | 7_4:+23329545 | None:intergenic |
| CCTGGGTATTATTTATTCCT+AGG | 0.349658 | 7_4:-23329820 | Msa1146190:three_prime_UTR |
| ATCTGAATTTGCCACAAGAT+TGG | 0.350427 | 7_4:-23331814 | Msa1146190:CDS |
| GAAGAGAAGTTCAATATGTT+TGG | 0.352686 | 7_4:+23331671 | None:intergenic |
| ACCCATTGTCATCCCTAAAT+AGG | 0.352912 | 7_4:+23330309 | None:intergenic |
| TTCCCATCCCTCTCTCTCTT+GGG | 0.360629 | 7_4:-23329877 | Msa1146190:three_prime_UTR |
| AGAGAAGTAAAGATAGAATA+TGG | 0.361732 | 7_4:-23329292 | None:intergenic |
| GTTTCAAAATCTTAGACAAT+TGG | 0.365504 | 7_4:-23330619 | Msa1146190:CDS |
| TTTCCCATCCCTCTCTCTCT+TGG | 0.369563 | 7_4:-23329878 | Msa1146190:three_prime_UTR |
| ACATGGGTAAAATGGATTCC+TGG | 0.375342 | 7_4:-23329838 | Msa1146190:three_prime_UTR |
| TGGATGTAAAATTCATTCCT+TGG | 0.375451 | 7_4:-23330114 | Msa1146190:three_prime_UTR |
| AGCTTAATAAAGTAACCCTT+TGG | 0.378906 | 7_4:+23329702 | None:intergenic |
| GGATCATGGCACCTTTATAA+TGG | 0.383978 | 7_4:+23331778 | None:intergenic |
| TACATTGAAGTAGAAGTGAT+TGG | 0.385158 | 7_4:-23329937 | Msa1146190:three_prime_UTR |
| GCTTAATAAAGTAACCCTTT+GGG | 0.386847 | 7_4:+23329703 | None:intergenic |
| ATTCGAGTAAAATTTCCATT+AGG | 0.387274 | 7_4:-23331750 | Msa1146190:CDS |
| GAGAATTTAGCTTTGATTGT+CGG | 0.391861 | 7_4:-23330787 | Msa1146190:CDS |
| ATAGTTAAAATGCAGGTAAA+GGG | 0.392443 | 7_4:+23330200 | None:intergenic |
| TGTTTACTAATTTAAACTCC+TGG | 0.394908 | 7_4:-23330028 | Msa1146190:three_prime_UTR |
| TCCCTATGTTCATCACCTAA+TGG | 0.400046 | 7_4:+23331735 | None:intergenic |
| CATAGTTAAAATGCAGGTAA+AGG | 0.402069 | 7_4:+23330199 | None:intergenic |
| ATATGTGGTAAACTTGCAAT+TGG | 0.410398 | 7_4:+23330811 | None:intergenic |
| TACTCGAATGGAACGGATCA+TGG | 0.410835 | 7_4:+23331764 | None:intergenic |
| CAATTGGAGTTACGTATTGA+TGG | 0.412134 | 7_4:-23330603 | Msa1146190:CDS |
| AATTCTCATTATTGTATCCC+TGG | 0.412936 | 7_4:+23330081 | None:intergenic |
| CAAATCCTTCAAAGCTAACT+TGG | 0.419928 | 7_4:+23331983 | None:intergenic |
| TGAGAGAGAGGAAGGATTTG+TGG | 0.424845 | 7_4:+23331852 | None:intergenic |
| AACTTGCAATTGGATCAAAA+AGG | 0.429829 | 7_4:+23330821 | None:intergenic |
| TAAACTTCTAGTACCATTCA+AGG | 0.431899 | 7_4:+23330464 | None:intergenic |
| AAACGTGGGTTCATATTCCT+TGG | 0.432183 | 7_4:-23329909 | Msa1146190:three_prime_UTR |
| ATAGGAGCTTGAATGTTCAT+TGG | 0.436023 | 7_4:+23331240 | None:intergenic |
| TTCCTTGGAATAACTTTCCC+AGG | 0.439519 | 7_4:-23330099 | Msa1146190:three_prime_UTR |
| AAATACATAAATGCGGTTGC+GGG | 0.440489 | 7_4:-23329593 | Msa1146190:three_prime_UTR |
| TTCTTGGATACATCAGATAG+AGG | 0.447502 | 7_4:-23330856 | Msa1146190:CDS |
| GCATCAATAGATATCTCAAT+AGG | 0.449747 | 7_4:+23330958 | None:intergenic |
| TGGTATAGAGATCAAAGTTA+AGG | 0.457776 | 7_4:+23331904 | None:intergenic |
| TAAATACATAAATGCGGTTG+CGG | 0.463091 | 7_4:-23329594 | Msa1146190:three_prime_UTR |
| CAAACAATGGATTCACGAAT+GGG | 0.464698 | 7_4:-23331940 | Msa1146190:CDS |
| GCCCTCAGACCCATTAAAGC+TGG | 0.465246 | 7_4:-23329555 | Msa1146190:three_prime_UTR |
| CATGGGTAAAATGGATTCCT+GGG | 0.465595 | 7_4:-23329837 | Msa1146190:three_prime_UTR |
| ATAAATGCGGTTGCGGGGCT+GGG | 0.466689 | 7_4:-23329587 | Msa1146190:three_prime_UTR |
| GGGTAGAACCCAGCTTTAAT+GGG | 0.467392 | 7_4:+23329546 | None:intergenic |
| ACTATAGTACCCTGCCCATT+GGG | 0.468248 | 7_4:+23330285 | None:intergenic |
| TATTCCTGTGTTTGGTATGA+AGG | 0.471348 | 7_4:+23329782 | None:intergenic |
| TACTATAGTACCCTGCCCAT+TGG | 0.471558 | 7_4:+23330284 | None:intergenic |
| ATACAAGATATAATTTGATC+AGG | 0.473788 | 7_4:+23332011 | None:intergenic |
| TAGGAGCTTGAATGTTCATT+GGG | 0.474325 | 7_4:+23331241 | None:intergenic |
| ATTAAATGATTGAATAGGTA+GGG | 0.475227 | 7_4:+23329469 | None:intergenic |
| GGGTTCTACCCTACCTATAA+CGG | 0.475878 | 7_4:-23329534 | Msa1146190:three_prime_UTR |
| AAATAAAACTATGATCCAAA+GGG | 0.478839 | 7_4:-23330150 | Msa1146190:three_prime_UTR |
| CATTGTTGGGTAAGAGAACA+AGG | 0.480560 | 7_4:+23331586 | None:intergenic |
| GCATTCCTGGGAATAGAGAA+TGG | 0.485978 | 7_4:+23329751 | None:intergenic |
| CCATTGTTTGGACAATGCAC+TGG | 0.487267 | 7_4:+23331953 | None:intergenic |
| GGTTCTACCCTACCTATAAC+GGG | 0.488539 | 7_4:-23329533 | Msa1146190:three_prime_UTR |
| GAAACCTTTGAGAGAGAGGA+AGG | 0.491596 | 7_4:+23331844 | None:intergenic |
| TTGACTAATTATTGTCAACT+TGG | 0.492233 | 7_4:+23331380 | None:intergenic |
| TGGAGCATGTGATCCTAGTA+TGG | 0.492416 | 7_4:-23330583 | Msa1146190:CDS |
| TCCATTAGGTGATGAACATA+GGG | 0.493896 | 7_4:-23331736 | Msa1146190:CDS |
| ATTTCCCATTCTCTATTCCC+AGG | 0.498108 | 7_4:-23329756 | Msa1146190:three_prime_UTR |
| AAGTGAAACCTTTGAGAGAG+AGG | 0.498903 | 7_4:+23331840 | None:intergenic |
| AGAACAAGGGAAAATTTGTA+TGG | 0.499254 | 7_4:+23331600 | None:intergenic |
| ATAGGTCAAAGAATCATTGT+TGG | 0.501308 | 7_4:+23331572 | None:intergenic |
| TTCCATTAGGTGATGAACAT+AGG | 0.503651 | 7_4:-23331737 | Msa1146190:CDS |
| GTTTACTAATTTAAACTCCT+GGG | 0.504620 | 7_4:-23330027 | Msa1146190:three_prime_UTR |
| GTATGAGCATTGTTAACTGT+GGG | 0.505890 | 7_4:-23331347 | Msa1146190:CDS |
| AGCCAAAAGAAGTCCATACT+AGG | 0.507020 | 7_4:+23330570 | None:intergenic |
| GAAATGAGTATTCCTGTGTT+TGG | 0.509353 | 7_4:+23329774 | None:intergenic |
| ACAATGGGTACCCAATGGGC+AGG | 0.510821 | 7_4:-23330295 | Msa1146190:three_prime_UTR |
| TAGGTCAAAGAATCATTGTT+GGG | 0.514994 | 7_4:+23331573 | None:intergenic |
| TCCTATTTAGGGATGACAAT+GGG | 0.518447 | 7_4:-23330310 | Msa1146190:three_prime_UTR |
| ATTCTCATTATTGTATCCCT+GGG | 0.519509 | 7_4:+23330082 | None:intergenic |
| ACAACCTCTAAAGCTAAACT+TGG | 0.520794 | 7_4:+23331212 | None:intergenic |
| CTTAATAAAGTAACCCTTTG+GGG | 0.520924 | 7_4:+23329704 | None:intergenic |
| GTTGTAGCCCATGAGGGTAC+AGG | 0.521782 | 7_4:+23330230 | None:intergenic |
| TTTAATCCAAAGAAGTCCCT+GGG | 0.522502 | 7_4:+23331519 | None:intergenic |
| GAATAGGTAGGGATGGCAAA+TGG | 0.523627 | 7_4:+23329480 | None:intergenic |
| TTCCCAAGAGAGAGAGGGAT+GGG | 0.523794 | 7_4:+23329875 | None:intergenic |
| CCCTCAGACCCATTAAAGCT+GGG | 0.525643 | 7_4:-23329554 | Msa1146190:three_prime_UTR |
| CATTCCTGGGAATAGAGAAT+GGG | 0.525669 | 7_4:+23329752 | None:intergenic |
| AAGAAAACCTTCGATAACCT+TGG | 0.528843 | 7_4:+23330874 | None:intergenic |
| AAAGCTAAATTCTCAATATG+TGG | 0.532201 | 7_4:+23330796 | None:intergenic |
| GATTAAATGATTGAATAGGT+AGG | 0.532753 | 7_4:+23329468 | None:intergenic |
| CCAAACAATGGATTCACGAA+TGG | 0.533265 | 7_4:-23331941 | Msa1146190:CDS |
| CGTATGAGCATTGTTAACTG+TGG | 0.538759 | 7_4:-23331348 | Msa1146190:CDS |
| GCTTGAATGTTCATTGGGTG+TGG | 0.541850 | 7_4:+23331246 | None:intergenic |
| GAAATAAAACTATGATCCAA+AGG | 0.545769 | 7_4:-23330151 | Msa1146190:three_prime_UTR |
| AAAGGAATTAGCGAAAGTCT+TGG | 0.547819 | 7_4:-23330646 | Msa1146190:CDS |
| GGAACAAAATCAACATGCCT+AGG | 0.548707 | 7_4:+23329803 | None:intergenic |
| GATGACAATGGGTACCCAAT+GGG | 0.550036 | 7_4:-23330299 | Msa1146190:three_prime_UTR |
| AAATCCTTCCTCTCTCTCAA+AGG | 0.551146 | 7_4:-23331848 | Msa1146190:CDS |
| TACGGCTCCAAGGTTATCGA+AGG | 0.551350 | 7_4:-23330881 | Msa1146190:CDS |
| CCCAGCTTTAATGGGTCTGA+GGG | 0.553587 | 7_4:+23329554 | None:intergenic |
| TCCTTAAAACATTGATAAGA+CGG | 0.555661 | 7_4:-23329345 | Msa1146190:three_prime_UTR |
| TCTTGGATACATCAGATAGA+GGG | 0.559791 | 7_4:-23330855 | Msa1146190:CDS |
| AATGATTGAATAGGTAGGGA+TGG | 0.567414 | 7_4:+23329473 | None:intergenic |
| TCACGAATGGGGATTAAGGA+TGG | 0.569324 | 7_4:-23331928 | Msa1146190:CDS |
| ATTATACACGGTCATATGCA+TGG | 0.571703 | 7_4:-23330426 | Msa1146190:three_prime_UTR |
| TCCTTGGAATAACTTTCCCA+GGG | 0.573053 | 7_4:-23330098 | Msa1146190:three_prime_UTR |
| ACCCAGCTTTAATGGGTCTG+AGG | 0.579321 | 7_4:+23329553 | None:intergenic |
| AAGCTAAACTTGGATAACAT+AGG | 0.579416 | 7_4:+23331222 | None:intergenic |
| AATAAAACTATGATCCAAAG+GGG | 0.582867 | 7_4:-23330149 | Msa1146190:three_prime_UTR |
| CACTAAAGTTGTAGCCCATG+AGG | 0.583759 | 7_4:+23330223 | None:intergenic |
| AGTGATCTTACAATCATCAA+AGG | 0.588671 | 7_4:+23331404 | None:intergenic |
| GCAAATGGACCCAAATCCAA+TGG | 0.590109 | 7_4:+23329495 | None:intergenic |
| ATTTGTGTTATAGTCAAACA+TGG | 0.594559 | 7_4:+23331884 | None:intergenic |
| CAGTTGATCATACTTGATTG+TGG | 0.595031 | 7_4:-23330997 | Msa1146190:CDS |
| ATTGATAGATTGATATCCAA+AGG | 0.597278 | 7_4:-23331708 | Msa1146190:CDS |
| TAATAAAGTAACCCTTTGGG+GGG | 0.598045 | 7_4:+23329706 | None:intergenic |
| GGATGACAATGGGTACCCAA+TGG | 0.598568 | 7_4:-23330300 | Msa1146190:three_prime_UTR |
| CATAAATTGATCCAATCTTG+TGG | 0.600842 | 7_4:+23331803 | None:intergenic |
| TCCCTGGGAAAGTTATTCCA+AGG | 0.602953 | 7_4:+23330097 | None:intergenic |
| GATATCCAAAGGAATTGCCA+AGG | 0.605454 | 7_4:-23331697 | Msa1146190:CDS |
| ATGAACAGAAGAATGTTCGA+AGG | 0.613153 | 7_4:+23331278 | None:intergenic |
| CAAAGGTGAAGTCTACAAGA+TGG | 0.618884 | 7_4:+23331421 | None:intergenic |
| AATACATAAATGCGGTTGCG+GGG | 0.624059 | 7_4:-23329592 | Msa1146190:three_prime_UTR |
| CCAGTGCATTGTCCAAACAA+TGG | 0.624511 | 7_4:-23331953 | Msa1146190:CDS |
| TTAATAAAGTAACCCTTTGG+GGG | 0.626947 | 7_4:+23329705 | None:intergenic |
| ATTCCCAAGAGAGAGAGGGA+TGG | 0.627766 | 7_4:+23329874 | None:intergenic |
| TGTTCCTTCATACCAAACAC+AGG | 0.628367 | 7_4:-23329786 | Msa1146190:three_prime_UTR |
| AGACATTCAGAAAACAGAGT+AGG | 0.630293 | 7_4:+23331093 | None:intergenic |
| CCTAGGAATAAATAATACCC+AGG | 0.630896 | 7_4:+23329820 | None:intergenic |
| CTCCTATTTAGGGATGACAA+TGG | 0.631048 | 7_4:-23330311 | Msa1146190:three_prime_UTR |
| GGTGTACCCAGTATATTCAA+AGG | 0.632128 | 7_4:+23330921 | None:intergenic |
| CAGAGTAGGCAAGATGTGCG+TGG | 0.633517 | 7_4:+23331107 | None:intergenic |
| AATATACTGGGTACACCACA+CGG | 0.635000 | 7_4:-23330915 | Msa1146190:CDS |
| AATGCGTCTTAGATGAACCC+AGG | 0.636781 | 7_4:-23331536 | Msa1146190:CDS |
| CAATGGGTACCCAATGGGCA+GGG | 0.640299 | 7_4:-23330294 | Msa1146190:three_prime_UTR |
| TGATAGTTATAAGCTTTCGA+CGG | 0.643407 | 7_4:+23331319 | None:intergenic |
| AATAAAGTAACCCTTTGGGG+GGG | 0.649811 | 7_4:+23329707 | None:intergenic |
| ATGCGTCTTAGATGAACCCA+GGG | 0.654897 | 7_4:-23331535 | Msa1146190:CDS |
| TAAAACTAAGCAATTATACA+CGG | 0.655078 | 7_4:-23330438 | Msa1146190:three_prime_UTR |
| AAACAATGGATTCACGAATG+GGG | 0.655889 | 7_4:-23331939 | Msa1146190:CDS |
| ACTAAAGTTGTAGCCCATGA+GGG | 0.658805 | 7_4:+23330224 | None:intergenic |
| ATTATATAAATACATAAATG+CGG | 0.670475 | 7_4:-23329600 | Msa1146190:three_prime_UTR |
| ATATCCAAAGGAATTGCCAA+GGG | 0.679320 | 7_4:-23331696 | Msa1146190:CDS |
| AAGTGATTGGATACAAAACG+TGG | 0.679343 | 7_4:-23329924 | Msa1146190:three_prime_UTR |
| CGTAAAAGAAATTATCCGTG+TGG | 0.680304 | 7_4:+23330900 | None:intergenic |
| ATTGTTGGGTAAGAGAACAA+GGG | 0.701545 | 7_4:+23331587 | None:intergenic |
| ATAAAACTATGATCCAAAGG+GGG | 0.711202 | 7_4:-23330148 | Msa1146190:three_prime_UTR |
| AGTGATTGGATACAAAACGT+GGG | 0.722069 | 7_4:-23329923 | Msa1146190:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATAATTTATTTATTTT+TGG | + | chr7_4:23331729-23331748 | None:intergenic | 0.0% |
| !! | ATTATATAAATACATAAATG+CGG | - | chr7_4:23331752-23331771 | Msa1146190:CDS | 10.0% |
| !!! | TAAAGAATTTTGAAATTAGA+AGG | - | chr7_4:23330960-23330979 | Msa1146190:CDS | 15.0% |
| !!! | AAAGAATTTTGAAATTAGAA+GGG | - | chr7_4:23330961-23330980 | Msa1146190:CDS | 15.0% |
| !! | TTACTTTATTAAGCTATTAT+AGG | - | chr7_4:23331658-23331677 | Msa1146190:CDS | 15.0% |
| !!! | TTTTGATTAAATGATTGAAT+AGG | + | chr7_4:23331891-23331910 | None:intergenic | 15.0% |
| !!! | GTTTTCGATTTTAAAATAAA+AGG | + | chr7_4:23332035-23332054 | None:intergenic | 15.0% |
| !! | ATACAAGATATAATTTGATC+AGG | + | chr7_4:23329344-23329363 | None:intergenic | 20.0% |
| !!! | TTTTATCCTTTGAATATACT+GGG | - | chr7_4:23330425-23330444 | Msa1146190:three_prime_UTR | 20.0% |
| !! | TAATTATCATTGTTGTAAAC+AGG | - | chr7_4:23330682-23330701 | Msa1146190:intron | 20.0% |
| !!! | AACCAACGTTTTTTTTTTTT+TGG | - | chr7_4:23330865-23330884 | Msa1146190:CDS | 20.0% |
| !! | TAAAACTAAGCAATTATACA+CGG | - | chr7_4:23330914-23330933 | Msa1146190:CDS | 20.0% |
| !!! | AAGAATTTTGAAATTAGAAG+GGG | - | chr7_4:23330962-23330981 | Msa1146190:CDS | 20.0% |
| !!! | TTTTTTCATAGTTAAAATGC+AGG | + | chr7_4:23331162-23331181 | None:intergenic | 20.0% |
| !!! | TCATAGTTTTATTTCAATTG+TGG | + | chr7_4:23331196-23331215 | None:intergenic | 20.0% |
| !! | AAATAAAACTATGATCCAAA+GGG | - | chr7_4:23331202-23331221 | Msa1146190:CDS | 20.0% |
| !!! | ATAATGAGAATTTTATTCCT+AGG | - | chr7_4:23331282-23331301 | Msa1146190:CDS | 20.0% |
| !! | AATAAAAATGGTTAGAACAT+GGG | - | chr7_4:23331498-23331517 | Msa1146190:CDS | 20.0% |
| !! | TATTAAGCTATTATAGGTTT+AGG | - | chr7_4:23331664-23331683 | Msa1146190:CDS | 20.0% |
| !! | ATTAAATGATTGAATAGGTA+GGG | + | chr7_4:23331886-23331905 | None:intergenic | 20.0% |
| !!! | TCTGTAACTTCATATTTTAT+CGG | + | chr7_4:23331950-23331969 | None:intergenic | 20.0% |
| ! | ATTTGTGTTATAGTCAAACA+TGG | + | chr7_4:23329471-23329490 | None:intergenic | 25.0% |
| ! | CAATTTATGCTCCATTATAA+AGG | - | chr7_4:23329563-23329582 | Msa1146190:three_prime_UTR | 25.0% |
| !! | TAATGGAAATTTTACTCGAA+TGG | + | chr7_4:23329603-23329622 | None:intergenic | 25.0% |
| ! | ATTCGAGTAAAATTTCCATT+AGG | - | chr7_4:23329602-23329621 | Msa1146190:three_prime_UTR | 25.0% |
| ! | ATTGATAGATTGATATCCAA+AGG | - | chr7_4:23329644-23329663 | Msa1146190:three_prime_UTR | 25.0% |
| ! | TTGACTAATTATTGTCAACT+TGG | + | chr7_4:23329975-23329994 | None:intergenic | 25.0% |
| !! | CTTTTATCCTTTGAATATAC+TGG | - | chr7_4:23330424-23330443 | Msa1146190:three_prime_UTR | 25.0% |
| ! | AAAGCTAAATTCTCAATATG+TGG | + | chr7_4:23330559-23330578 | None:intergenic | 25.0% |
| ! | GTTTCAAAATCTTAGACAAT+TGG | - | chr7_4:23330733-23330752 | Msa1146190:intron | 25.0% |
| !! | TTACACTCAAAGTAAGTTTT+TGG | + | chr7_4:23330838-23330857 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTGGCCTTGAA+TGG | - | chr7_4:23330875-23330894 | Msa1146190:CDS | 25.0% |
| !!! | AGAATTTTGAAATTAGAAGG+GGG | - | chr7_4:23330963-23330982 | Msa1146190:CDS | 25.0% |
| ! | TTTACAAATGACTCCTATTT+AGG | - | chr7_4:23331030-23331049 | Msa1146190:CDS | 25.0% |
| ! | TTACAAATGACTCCTATTTA+GGG | - | chr7_4:23331031-23331050 | Msa1146190:CDS | 25.0% |
| ! | ATAGTTAAAATGCAGGTAAA+GGG | + | chr7_4:23331155-23331174 | None:intergenic | 25.0% |
| ! | GAAATAAAACTATGATCCAA+AGG | - | chr7_4:23331201-23331220 | Msa1146190:CDS | 25.0% |
| ! | AATAAAACTATGATCCAAAG+GGG | - | chr7_4:23331203-23331222 | Msa1146190:CDS | 25.0% |
| !!! | CACATTTTTGAAATATTCCT+AGG | + | chr7_4:23331302-23331321 | None:intergenic | 25.0% |
| ! | TGTTTACTAATTTAAACTCC+TGG | - | chr7_4:23331324-23331343 | Msa1146190:CDS | 25.0% |
| ! | GTTTACTAATTTAAACTCCT+GGG | - | chr7_4:23331325-23331344 | Msa1146190:CDS | 25.0% |
| ! | GAATAAAAATGGTTAGAACA+TGG | - | chr7_4:23331497-23331516 | Msa1146190:CDS | 25.0% |
| ! | GATTAAATGATTGAATAGGT+AGG | + | chr7_4:23331887-23331906 | None:intergenic | 25.0% |
| !! | CTGTAACTTCATATTTTATC+GGG | + | chr7_4:23331949-23331968 | None:intergenic | 25.0% |
| ! | TCCTTAAAACATTGATAAGA+CGG | - | chr7_4:23332007-23332026 | Msa1146190:CDS | 25.0% |
| TGGTATAGAGATCAAAGTTA+AGG | + | chr7_4:23329451-23329470 | None:intergenic | 30.0% | |
| CATAAATTGATCCAATCTTG+TGG | + | chr7_4:23329552-23329571 | None:intergenic | 30.0% | |
| ! | GAAATTTTACTCGAATGGAA+CGG | + | chr7_4:23329598-23329617 | None:intergenic | 30.0% |
| GAAGAGAAGTTCAATATGTT+TGG | + | chr7_4:23329684-23329703 | None:intergenic | 30.0% | |
| AGAACAAGGGAAAATTTGTA+TGG | + | chr7_4:23329755-23329774 | None:intergenic | 30.0% | |
| TAGGTCAAAGAATCATTGTT+GGG | + | chr7_4:23329782-23329801 | None:intergenic | 30.0% | |
| ATAGGTCAAAGAATCATTGT+TGG | + | chr7_4:23329783-23329802 | None:intergenic | 30.0% | |
| AGTGATCTTACAATCATCAA+AGG | + | chr7_4:23329951-23329970 | None:intergenic | 30.0% | |
| TGATAGTTATAAGCTTTCGA+CGG | + | chr7_4:23330036-23330055 | None:intergenic | 30.0% | |
| AAGCTAAACTTGGATAACAT+AGG | + | chr7_4:23330133-23330152 | None:intergenic | 30.0% | |
| !! | TTATCCAAGTTTAGCTTTAG+AGG | - | chr7_4:23330136-23330155 | Msa1146190:three_prime_UTR | 30.0% |
| GCATCAATAGATATCTCAAT+AGG | + | chr7_4:23330397-23330416 | None:intergenic | 30.0% | |
| ! | CACACGGATAATTTCTTTTA+CGG | - | chr7_4:23330453-23330472 | Msa1146190:exon | 30.0% |
| AACTTGCAATTGGATCAAAA+AGG | + | chr7_4:23330534-23330553 | None:intergenic | 30.0% | |
| ATATGTGGTAAACTTGCAAT+TGG | + | chr7_4:23330544-23330563 | None:intergenic | 30.0% | |
| !! | GAGAATTTAGCTTTGATTGT+CGG | - | chr7_4:23330565-23330584 | Msa1146190:CDS | 30.0% |
| ! | AACGTAATGGAAAGAATACA+AGG | + | chr7_4:23330637-23330656 | None:intergenic | 30.0% |
| TCATTGTTGTAAACAGGTAA+AGG | - | chr7_4:23330688-23330707 | Msa1146190:intron | 30.0% | |
| GGCCAAAAAAAAAAAAACGT+TGG | + | chr7_4:23330870-23330889 | None:intergenic | 30.0% | |
| TAAACTTCTAGTACCATTCA+AGG | + | chr7_4:23330891-23330910 | None:intergenic | 30.0% | |
| !!! | TTTTTTATAAACGCGGGTAT+GGG | + | chr7_4:23331100-23331119 | None:intergenic | 30.0% |
| !!! | ATTTTTTATAAACGCGGGTA+TGG | + | chr7_4:23331101-23331120 | None:intergenic | 30.0% |
| !!! | ACAGGCATTTTTTATAAACG+CGG | + | chr7_4:23331107-23331126 | None:intergenic | 30.0% |
| CATAGTTAAAATGCAGGTAA+AGG | + | chr7_4:23331156-23331175 | None:intergenic | 30.0% | |
| ATAAAACTATGATCCAAAGG+GGG | - | chr7_4:23331204-23331223 | Msa1146190:CDS | 30.0% | |
| TGGATGTAAAATTCATTCCT+TGG | - | chr7_4:23331238-23331257 | Msa1146190:CDS | 30.0% | |
| ATTCTCATTATTGTATCCCT+GGG | + | chr7_4:23331273-23331292 | None:intergenic | 30.0% | |
| AATTCTCATTATTGTATCCC+TGG | + | chr7_4:23331274-23331293 | None:intergenic | 30.0% | |
| !!! | ATATATTTTGACAGATACCC+AGG | + | chr7_4:23331345-23331364 | None:intergenic | 30.0% |
| TACATTGAAGTAGAAGTGAT+TGG | - | chr7_4:23331415-23331434 | Msa1146190:CDS | 30.0% | |
| ! | GATGGGAAAATTTTATTCCA+AGG | + | chr7_4:23331463-23331482 | None:intergenic | 30.0% |
| GAGATAAAAAATGCATTCCT+GGG | + | chr7_4:23331616-23331635 | None:intergenic | 30.0% | |
| AGAGATAAAAAATGCATTCC+TGG | + | chr7_4:23331617-23331636 | None:intergenic | 30.0% | |
| TTAATAAAGTAACCCTTTGG+GGG | + | chr7_4:23331650-23331669 | None:intergenic | 30.0% | |
| CTTAATAAAGTAACCCTTTG+GGG | + | chr7_4:23331651-23331670 | None:intergenic | 30.0% | |
| GCTTAATAAAGTAACCCTTT+GGG | + | chr7_4:23331652-23331671 | None:intergenic | 30.0% | |
| AGCTTAATAAAGTAACCCTT+TGG | + | chr7_4:23331653-23331672 | None:intergenic | 30.0% | |
| TAAATACATAAATGCGGTTG+CGG | - | chr7_4:23331758-23331777 | Msa1146190:CDS | 30.0% | |
| AAAAATACCCGTTATAGGTA+GGG | + | chr7_4:23331829-23331848 | None:intergenic | 30.0% | |
| AAAAAATACCCGTTATAGGT+AGG | + | chr7_4:23331830-23331849 | None:intergenic | 30.0% | |
| ! | TCCGTCTTATCAATGTTTTA+AGG | + | chr7_4:23332011-23332030 | None:intergenic | 30.0% |
| !!! | CTTTTCCAAGTTAGCTTTGA+AGG | - | chr7_4:23329364-23329383 | Msa1146190:three_prime_UTR | 35.0% |
| CAAATCCTTCAAAGCTAACT+TGG | + | chr7_4:23329372-23329391 | None:intergenic | 35.0% | |
| !! | CAAGTTAGCTTTGAAGGATT+TGG | - | chr7_4:23329370-23329389 | Msa1146190:three_prime_UTR | 35.0% |
| ! | CAAACAATGGATTCACGAAT+GGG | - | chr7_4:23329412-23329431 | Msa1146190:three_prime_UTR | 35.0% |
| ! | AAACAATGGATTCACGAATG+GGG | - | chr7_4:23329413-23329432 | Msa1146190:three_prime_UTR | 35.0% |
| ATCTGAATTTGCCACAAGAT+TGG | - | chr7_4:23329538-23329557 | Msa1146190:three_prime_UTR | 35.0% | |
| TTCCATTAGGTGATGAACAT+AGG | - | chr7_4:23329615-23329634 | Msa1146190:three_prime_UTR | 35.0% | |
| TCCATTAGGTGATGAACATA+GGG | - | chr7_4:23329616-23329635 | Msa1146190:three_prime_UTR | 35.0% | |
| ATATCCAAAGGAATTGCCAA+GGG | - | chr7_4:23329656-23329675 | Msa1146190:three_prime_UTR | 35.0% | |
| ATTGTTGGGTAAGAGAACAA+GGG | + | chr7_4:23329768-23329787 | None:intergenic | 35.0% | |
| !! | GTTCATCTAAGACGCATTTT+TGG | + | chr7_4:23329814-23329833 | None:intergenic | 35.0% |
| TTTAATCCAAAGAAGTCCCT+GGG | + | chr7_4:23329836-23329855 | None:intergenic | 35.0% | |
| ! | TTTTAATCCAAAGAAGTCCC+TGG | + | chr7_4:23329837-23329856 | None:intergenic | 35.0% |
| ! | GTATGAGCATTGTTAACTGT+GGG | - | chr7_4:23330005-23330024 | Msa1146190:three_prime_UTR | 35.0% |
| ATGAACAGAAGAATGTTCGA+AGG | + | chr7_4:23330077-23330096 | None:intergenic | 35.0% | |
| TAGGAGCTTGAATGTTCATT+GGG | + | chr7_4:23330114-23330133 | None:intergenic | 35.0% | |
| ATAGGAGCTTGAATGTTCAT+TGG | + | chr7_4:23330115-23330134 | None:intergenic | 35.0% | |
| !! | ACAACCTCTAAAGCTAAACT+TGG | + | chr7_4:23330143-23330162 | None:intergenic | 35.0% |
| ! | GTATGTTTTCAGAGCGTATA+AGG | - | chr7_4:23330161-23330180 | Msa1146190:three_prime_UTR | 35.0% |
| AGACATTCAGAAAACAGAGT+AGG | + | chr7_4:23330262-23330281 | None:intergenic | 35.0% | |
| TATGTGCAAGCAGTTCTTAA+AGG | + | chr7_4:23330302-23330321 | None:intergenic | 35.0% | |
| CAGTTGATCATACTTGATTG+TGG | - | chr7_4:23330355-23330374 | Msa1146190:three_prime_UTR | 35.0% | |
| CGTAAAAGAAATTATCCGTG+TGG | + | chr7_4:23330455-23330474 | None:intergenic | 35.0% | |
| ! | TAATTTCTTTTACGGCTCCA+AGG | - | chr7_4:23330461-23330480 | Msa1146190:CDS | 35.0% |
| AAGAAAACCTTCGATAACCT+TGG | + | chr7_4:23330481-23330500 | None:intergenic | 35.0% | |
| ! | AAGGTTATCGAAGGTTTTCT+TGG | - | chr7_4:23330480-23330499 | Msa1146190:CDS | 35.0% |
| TTCTTGGATACATCAGATAG+AGG | - | chr7_4:23330496-23330515 | Msa1146190:CDS | 35.0% | |
| TCTTGGATACATCAGATAGA+GGG | - | chr7_4:23330497-23330516 | Msa1146190:CDS | 35.0% | |
| AAAGGAATTAGCGAAAGTCT+TGG | - | chr7_4:23330706-23330725 | Msa1146190:intron | 35.0% | |
| CAATTGGAGTTACGTATTGA+TGG | - | chr7_4:23330749-23330768 | Msa1146190:intron | 35.0% | |
| ! | ATCCTAGTATGGACTTCTTT+TGG | - | chr7_4:23330780-23330799 | Msa1146190:CDS | 35.0% |
| ATTATACACGGTCATATGCA+TGG | - | chr7_4:23330926-23330945 | Msa1146190:CDS | 35.0% | |
| TCCTATTTAGGGATGACAAT+GGG | - | chr7_4:23331042-23331061 | Msa1146190:CDS | 35.0% | |
| ! | TTTTTATAAACGCGGGTATG+GGG | + | chr7_4:23331099-23331118 | None:intergenic | 35.0% |
| !!! | CAGGCATTTTTTATAAACGC+GGG | + | chr7_4:23331106-23331125 | None:intergenic | 35.0% |
| AAGTGATTGGATACAAAACG+TGG | - | chr7_4:23331428-23331447 | Msa1146190:CDS | 35.0% | |
| AGTGATTGGATACAAAACGT+GGG | - | chr7_4:23331429-23331448 | Msa1146190:CDS | 35.0% | |
| ! | TTTTATTCCCAAGAGAGAGA+GGG | + | chr7_4:23331485-23331504 | None:intergenic | 35.0% |
| ! | TTTTTATTCCCAAGAGAGAG+AGG | + | chr7_4:23331486-23331505 | None:intergenic | 35.0% |
| CTCTCTCTTGGGAATAAAAA+TGG | - | chr7_4:23331486-23331505 | Msa1146190:CDS | 35.0% | |
| TGGTTAGAACATGGGTAAAA+TGG | - | chr7_4:23331506-23331525 | Msa1146190:CDS | 35.0% | |
| CCTAGGAATAAATAATACCC+AGG | + | chr7_4:23331535-23331554 | None:intergenic | 35.0% | |
| CCTGGGTATTATTTATTCCT+AGG | - | chr7_4:23331532-23331551 | Msa1146190:CDS | 35.0% | |
| TATTCCTGTGTTTGGTATGA+AGG | + | chr7_4:23331573-23331592 | None:intergenic | 35.0% | |
| GAAATGAGTATTCCTGTGTT+TGG | + | chr7_4:23331581-23331600 | None:intergenic | 35.0% | |
| TAATAAAGTAACCCTTTGGG+GGG | + | chr7_4:23331649-23331668 | None:intergenic | 35.0% | |
| AAATACATAAATGCGGTTGC+GGG | - | chr7_4:23331759-23331778 | Msa1146190:CDS | 35.0% | |
| !!! | CCTATAACGGGTATTTTTTG+CGG | - | chr7_4:23331831-23331850 | Msa1146190:CDS | 35.0% |
| !!! | CTATAACGGGTATTTTTTGC+GGG | - | chr7_4:23331832-23331851 | Msa1146190:CDS | 35.0% |
| AATGATTGAATAGGTAGGGA+TGG | + | chr7_4:23331882-23331901 | None:intergenic | 35.0% | |
| CCATTCGTGAATCCATTGTT+TGG | + | chr7_4:23329414-23329433 | None:intergenic | 40.0% | |
| ! | CCAAACAATGGATTCACGAA+TGG | - | chr7_4:23329411-23329430 | Msa1146190:three_prime_UTR | 40.0% |
| AAATCCTTCCTCTCTCTCAA+AGG | - | chr7_4:23329504-23329523 | Msa1146190:three_prime_UTR | 40.0% | |
| ! | AAGTGAAACCTTTGAGAGAG+AGG | + | chr7_4:23329515-23329534 | None:intergenic | 40.0% |
| GGATCATGGCACCTTTATAA+TGG | + | chr7_4:23329577-23329596 | None:intergenic | 40.0% | |
| TCCCTATGTTCATCACCTAA+TGG | + | chr7_4:23329620-23329639 | None:intergenic | 40.0% | |
| GATATCCAAAGGAATTGCCA+AGG | - | chr7_4:23329655-23329674 | Msa1146190:three_prime_UTR | 40.0% | |
| TTCAATATGTTTGGCACCCT+TGG | + | chr7_4:23329675-23329694 | None:intergenic | 40.0% | |
| CATTGTTGGGTAAGAGAACA+AGG | + | chr7_4:23329769-23329788 | None:intergenic | 40.0% | |
| !! | GCATTTTTGGAGGTGCAAAT+AGG | + | chr7_4:23329801-23329820 | None:intergenic | 40.0% |
| !! | CATCTAAGACGCATTTTTGG+AGG | + | chr7_4:23329811-23329830 | None:intergenic | 40.0% |
| CAAAGGTGAAGTCTACAAGA+TGG | + | chr7_4:23329934-23329953 | None:intergenic | 40.0% | |
| ! | CGTATGAGCATTGTTAACTG+TGG | - | chr7_4:23330004-23330023 | Msa1146190:three_prime_UTR | 40.0% |
| GGTGTACCCAGTATATTCAA+AGG | + | chr7_4:23330434-23330453 | None:intergenic | 40.0% | |
| AATATACTGGGTACACCACA+CGG | - | chr7_4:23330437-23330456 | Msa1146190:three_prime_UTR | 40.0% | |
| GCAATTGGATCAAAAAGGTG+TGG | + | chr7_4:23330529-23330548 | None:intergenic | 40.0% | |
| GCAACTAGTGAACAACGTAA+TGG | + | chr7_4:23330650-23330669 | None:intergenic | 40.0% | |
| AGCCAAAAGAAGTCCATACT+AGG | + | chr7_4:23330785-23330804 | None:intergenic | 40.0% | |
| CTCCTATTTAGGGATGACAA+TGG | - | chr7_4:23331041-23331060 | Msa1146190:CDS | 40.0% | |
| ACCCATTGTCATCCCTAAAT+AGG | + | chr7_4:23331046-23331065 | None:intergenic | 40.0% | |
| AAAAAATGCCTGTACCCTCA+TGG | - | chr7_4:23331114-23331133 | Msa1146190:CDS | 40.0% | |
| AAAAATGCCTGTACCCTCAT+GGG | - | chr7_4:23331115-23331134 | Msa1146190:CDS | 40.0% | |
| ACTAAAGTTGTAGCCCATGA+GGG | + | chr7_4:23331131-23331150 | None:intergenic | 40.0% | |
| TTCCTTGGAATAACTTTCCC+AGG | - | chr7_4:23331253-23331272 | Msa1146190:CDS | 40.0% | |
| TCCTTGGAATAACTTTCCCA+GGG | - | chr7_4:23331254-23331273 | Msa1146190:CDS | 40.0% | |
| AAACGTGGGTTCATATTCCT+TGG | - | chr7_4:23331443-23331462 | Msa1146190:CDS | 40.0% | |
| ! | ACATGGGTAAAATGGATTCC+TGG | - | chr7_4:23331514-23331533 | Msa1146190:CDS | 40.0% |
| ! | CATGGGTAAAATGGATTCCT+GGG | - | chr7_4:23331515-23331534 | Msa1146190:CDS | 40.0% |
| GGAACAAAATCAACATGCCT+AGG | + | chr7_4:23331552-23331571 | None:intergenic | 40.0% | |
| TGTTCCTTCATACCAAACAC+AGG | - | chr7_4:23331566-23331585 | Msa1146190:CDS | 40.0% | |
| ATTTCCCATTCTCTATTCCC+AGG | - | chr7_4:23331596-23331615 | Msa1146190:CDS | 40.0% | |
| CATTCCTGGGAATAGAGAAT+GGG | + | chr7_4:23331603-23331622 | None:intergenic | 40.0% | |
| ! | AATAAAGTAACCCTTTGGGG+GGG | + | chr7_4:23331648-23331667 | None:intergenic | 40.0% |
| AATACATAAATGCGGTTGCG+GGG | - | chr7_4:23331760-23331779 | Msa1146190:CDS | 40.0% | |
| CCGCAAAAAATACCCGTTAT+AGG | + | chr7_4:23331834-23331853 | None:intergenic | 40.0% | |
| !!! | GTATTTTTTGCGGGTTCCAT+TGG | - | chr7_4:23331841-23331860 | Msa1146190:CDS | 40.0% |
| CCATTGTTTGGACAATGCAC+TGG | + | chr7_4:23329402-23329421 | None:intergenic | 45.0% | |
| CCAGTGCATTGTCCAAACAA+TGG | - | chr7_4:23329399-23329418 | Msa1146190:three_prime_UTR | 45.0% | |
| GGATTCACGAATGGGGATTA+AGG | - | chr7_4:23329420-23329439 | Msa1146190:three_prime_UTR | 45.0% | |
| TCACGAATGGGGATTAAGGA+TGG | - | chr7_4:23329424-23329443 | Msa1146190:three_prime_UTR | 45.0% | |
| TGAGAGAGAGGAAGGATTTG+TGG | + | chr7_4:23329503-23329522 | None:intergenic | 45.0% | |
| ! | GAAACCTTTGAGAGAGAGGA+AGG | + | chr7_4:23329511-23329530 | None:intergenic | 45.0% |
| TACTCGAATGGAACGGATCA+TGG | + | chr7_4:23329591-23329610 | None:intergenic | 45.0% | |
| AATGCGTCTTAGATGAACCC+AGG | - | chr7_4:23329816-23329835 | Msa1146190:three_prime_UTR | 45.0% | |
| ATGCGTCTTAGATGAACCCA+GGG | - | chr7_4:23329817-23329836 | Msa1146190:three_prime_UTR | 45.0% | |
| GCTTGAATGTTCATTGGGTG+TGG | + | chr7_4:23330109-23330128 | None:intergenic | 45.0% | |
| GAAAGAATACAAGGCAGTGC+TGG | + | chr7_4:23330628-23330647 | None:intergenic | 45.0% | |
| TGGAGCATGTGATCCTAGTA+TGG | - | chr7_4:23330769-23330788 | Msa1146190:intron | 45.0% | |
| GATGACAATGGGTACCCAAT+GGG | - | chr7_4:23331053-23331072 | Msa1146190:CDS | 45.0% | |
| ACTATAGTACCCTGCCCATT+GGG | + | chr7_4:23331070-23331089 | None:intergenic | 45.0% | |
| TACTATAGTACCCTGCCCAT+TGG | + | chr7_4:23331071-23331090 | None:intergenic | 45.0% | |
| CACTAAAGTTGTAGCCCATG+AGG | + | chr7_4:23331132-23331151 | None:intergenic | 45.0% | |
| CATGAAACAAACACCCCCTT+TGG | + | chr7_4:23331220-23331239 | None:intergenic | 45.0% | |
| !! | CAAAGGGGGTGTTTGTTTCA+TGG | - | chr7_4:23331218-23331237 | Msa1146190:CDS | 45.0% |
| TCCCTGGGAAAGTTATTCCA+AGG | + | chr7_4:23331258-23331277 | None:intergenic | 45.0% | |
| GCATTCCTGGGAATAGAGAA+TGG | + | chr7_4:23331604-23331623 | None:intergenic | 45.0% | |
| ! | GGGTAGAACCCAGCTTTAAT+GGG | + | chr7_4:23331809-23331828 | None:intergenic | 45.0% |
| ! | AGGGTAGAACCCAGCTTTAA+TGG | + | chr7_4:23331810-23331829 | None:intergenic | 45.0% |
| GGGTTCTACCCTACCTATAA+CGG | - | chr7_4:23331818-23331837 | Msa1146190:CDS | 45.0% | |
| GGTTCTACCCTACCTATAAC+GGG | - | chr7_4:23331819-23331838 | Msa1146190:CDS | 45.0% | |
| TTTGCGGGTTCCATTGGATT+TGG | - | chr7_4:23331847-23331866 | Msa1146190:CDS | 45.0% | |
| TTGCGGGTTCCATTGGATTT+GGG | - | chr7_4:23331848-23331867 | Msa1146190:CDS | 45.0% | |
| GCAAATGGACCCAAATCCAA+TGG | + | chr7_4:23331860-23331879 | None:intergenic | 45.0% | |
| GAATAGGTAGGGATGGCAAA+TGG | + | chr7_4:23331875-23331894 | None:intergenic | 45.0% | |
| !!! | TTTAAAGTTAATAAATATTT+TGG | + | chr7_4:23331009-23331028 | None:intergenic | 5.0% |
| GATGAACCCAGGGACTTCTT+TGG | - | chr7_4:23329827-23329846 | Msa1146190:three_prime_UTR | 50.0% | |
| TACGGCTCCAAGGTTATCGA+AGG | - | chr7_4:23330471-23330490 | Msa1146190:CDS | 50.0% | |
| GGATGACAATGGGTACCCAA+TGG | - | chr7_4:23331052-23331071 | Msa1146190:CDS | 50.0% | |
| TTTCCCATCCCTCTCTCTCT+TGG | - | chr7_4:23331474-23331493 | Msa1146190:CDS | 50.0% | |
| TTCCCATCCCTCTCTCTCTT+GGG | - | chr7_4:23331475-23331494 | Msa1146190:CDS | 50.0% | |
| TTCCCAAGAGAGAGAGGGAT+GGG | + | chr7_4:23331480-23331499 | None:intergenic | 50.0% | |
| ATTCCCAAGAGAGAGAGGGA+TGG | + | chr7_4:23331481-23331500 | None:intergenic | 50.0% | |
| ! | TCTGAAACAAACCCCCCCAA+AGG | - | chr7_4:23331634-23331653 | Msa1146190:CDS | 50.0% |
| CTGAAACAAACCCCCCCAAA+GGG | - | chr7_4:23331635-23331654 | Msa1146190:CDS | 50.0% | |
| ! | CCCAGCTTTAATGGGTCTGA+GGG | + | chr7_4:23331801-23331820 | None:intergenic | 50.0% |
| CCCTCAGACCCATTAAAGCT+GGG | - | chr7_4:23331798-23331817 | Msa1146190:CDS | 50.0% | |
| ! | ACCCAGCTTTAATGGGTCTG+AGG | + | chr7_4:23331802-23331821 | None:intergenic | 50.0% |
| GGCACCCTTGGCAATTCCTT+TGG | + | chr7_4:23329663-23329682 | None:intergenic | 55.0% | |
| CAGAGTAGGCAAGATGTGCG+TGG | + | chr7_4:23330248-23330267 | None:intergenic | 55.0% | |
| ACAATGGGTACCCAATGGGC+AGG | - | chr7_4:23331057-23331076 | Msa1146190:CDS | 55.0% | |
| CAATGGGTACCCAATGGGCA+GGG | - | chr7_4:23331058-23331077 | Msa1146190:CDS | 55.0% | |
| ! | GTTGTAGCCCATGAGGGTAC+AGG | + | chr7_4:23331125-23331144 | None:intergenic | 55.0% |
| ATAAATGCGGTTGCGGGGCT+GGG | - | chr7_4:23331765-23331784 | Msa1146190:CDS | 55.0% | |
| GCCCTCAGACCCATTAAAGC+TGG | - | chr7_4:23331797-23331816 | Msa1146190:CDS | 55.0% | |
| CATAAATGCGGTTGCGGGGC+TGG | - | chr7_4:23331764-23331783 | Msa1146190:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 23329293 | 23332081 | 23329293 | ID=Msa1146190;Name=Msa1146190 |
| chr7_4 | mRNA | 23329293 | 23332081 | 23329293 | ID=Msa1146190-mRNA-1;Parent=Msa1146190;Name=Msa1146190-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|1|0.5|1|1|1|2|1165|505 |
| chr7_4 | exon | 23329293 | 23330670 | 23329293 | ID=Msa1146190-mRNA-1:exon:5902;Parent=Msa1146190-mRNA-1 |
| chr7_4 | exon | 23330777 | 23332081 | 23330777 | ID=Msa1146190-mRNA-1:exon:5901;Parent=Msa1146190-mRNA-1 |
| chr7_4 | CDS | 23330777 | 23332081 | 23330777 | ID=Msa1146190-mRNA-1:cds;Parent=Msa1146190-mRNA-1 |
| chr7_4 | CDS | 23330458 | 23330670 | 23330458 | ID=Msa1146190-mRNA-1:cds;Parent=Msa1146190-mRNA-1 |
| chr7_4 | three_prime_UTR | 23329293 | 23330457 | 23329293 | ID=Msa1146190-mRNA-1:three_prime_utr;Parent=Msa1146190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
