Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149200 | XP_003623029.2 | 93.843 | 471 | 25 | 3 | 1 | 471 | 2 | 468 | 0.0 | 865 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149200 | sp|Q9SD53|Y3720_ARATH | 25.676 | 444 | 263 | 17 | 42 | 467 | 61 | 455 | 1.96e-23 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149200 | G7L3E1 | 93.843 | 471 | 25 | 3 | 1 | 471 | 2 | 468 | 0.0 | 865 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1105970 | Msa1149200 | 0.972066 | 3.662620e-134 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149200 | MtrunA17_Chr7g0238241 | 93.843 | 471 | 25 | 3 | 1 | 471 | 2 | 468 | 0.0 | 865 |
| Msa1149200 | MtrunA17_Chr7g0238231 | 74.851 | 505 | 76 | 5 | 1 | 470 | 2 | 490 | 0.0 | 740 |
| Msa1149200 | MtrunA17_Chr7g0238511 | 69.409 | 474 | 102 | 5 | 1 | 470 | 2 | 436 | 0.0 | 633 |
| Msa1149200 | MtrunA17_Chr7g0238101 | 68.454 | 485 | 133 | 7 | 1 | 471 | 2 | 480 | 0.0 | 632 |
| Msa1149200 | MtrunA17_Chr7g0238141 | 72.340 | 470 | 106 | 7 | 1 | 470 | 2 | 447 | 0.0 | 626 |
| Msa1149200 | MtrunA17_Chr7g0238111 | 65.263 | 475 | 115 | 7 | 1 | 470 | 2 | 431 | 0.0 | 593 |
| Msa1149200 | MtrunA17_Chr7g0238171 | 59.369 | 539 | 129 | 6 | 1 | 470 | 2 | 519 | 0.0 | 592 |
| Msa1149200 | MtrunA17_Chr7g0238191 | 67.728 | 471 | 118 | 9 | 1 | 470 | 2 | 439 | 0.0 | 570 |
| Msa1149200 | MtrunA17_Chr7g0238131 | 67.674 | 430 | 118 | 4 | 49 | 471 | 1 | 416 | 0.0 | 566 |
| Msa1149200 | MtrunA17_Chr7g0238251 | 61.188 | 505 | 143 | 9 | 1 | 469 | 2 | 489 | 0.0 | 538 |
| Msa1149200 | MtrunA17_Chr7g0238181 | 66.500 | 400 | 87 | 5 | 71 | 470 | 2 | 354 | 0.0 | 511 |
| Msa1149200 | MtrunA17_Chr7g0238151 | 82.879 | 257 | 42 | 1 | 1 | 257 | 1 | 255 | 5.94e-149 | 425 |
| Msa1149200 | MtrunA17_Chr7g0232531 | 74.046 | 262 | 62 | 3 | 1 | 258 | 2 | 261 | 1.94e-125 | 365 |
| Msa1149200 | MtrunA17_Chr7g0238291 | 70.881 | 261 | 69 | 4 | 1 | 259 | 2 | 257 | 4.41e-118 | 346 |
| Msa1149200 | MtrunA17_Chr7g0238051 | 64.621 | 277 | 68 | 3 | 224 | 470 | 89 | 365 | 8.32e-117 | 347 |
| Msa1149200 | MtrunA17_Chr7g0238071 | 84.865 | 185 | 25 | 1 | 1 | 185 | 2 | 183 | 4.20e-107 | 317 |
| Msa1149200 | MtrunA17_Chr8g0352511 | 40.164 | 488 | 225 | 13 | 15 | 469 | 19 | 472 | 5.58e-106 | 323 |
| Msa1149200 | MtrunA17_Chr7g0238201 | 86.111 | 180 | 25 | 0 | 1 | 180 | 2 | 181 | 2.88e-105 | 311 |
| Msa1149200 | MtrunA17_Chr7g0238091 | 74.611 | 193 | 49 | 0 | 278 | 470 | 27 | 219 | 1.80e-103 | 308 |
| Msa1149200 | MtrunA17_Chr8g0354591 | 39.407 | 472 | 223 | 11 | 25 | 469 | 24 | 459 | 4.59e-101 | 310 |
| Msa1149200 | MtrunA17_Chr7g0238031 | 76.923 | 195 | 44 | 1 | 1 | 194 | 1 | 195 | 3.81e-99 | 308 |
| Msa1149200 | MtrunA17_Chr7g0232521 | 80.541 | 185 | 36 | 0 | 279 | 463 | 29 | 213 | 1.71e-97 | 292 |
| Msa1149200 | MtrunA17_Chr7g0238211 | 80.220 | 182 | 36 | 0 | 288 | 469 | 1 | 182 | 6.79e-94 | 282 |
| Msa1149200 | MtrunA17_Chr7g0238081 | 73.626 | 182 | 40 | 1 | 288 | 469 | 1 | 174 | 1.02e-92 | 278 |
| Msa1149200 | MtrunA17_Chr8g0354581 | 39.583 | 480 | 224 | 13 | 23 | 470 | 22 | 467 | 3.09e-91 | 285 |
| Msa1149200 | MtrunA17_Chr7g0238021 | 63.682 | 201 | 57 | 3 | 71 | 259 | 2 | 198 | 2.02e-78 | 243 |
| Msa1149200 | MtrunA17_Chr7g0238281 | 67.582 | 182 | 58 | 1 | 289 | 470 | 3 | 183 | 4.52e-73 | 228 |
| Msa1149200 | MtrunA17_Chr8g0352491 | 47.568 | 185 | 82 | 2 | 300 | 469 | 2 | 186 | 1.97e-51 | 172 |
| Msa1149200 | MtrunA17_Chr1g0170061 | 50.244 | 205 | 73 | 7 | 2 | 202 | 3 | 182 | 1.11e-49 | 170 |
| Msa1149200 | MtrunA17_Chr5g0439641 | 30.717 | 446 | 240 | 13 | 44 | 467 | 49 | 447 | 6.66e-46 | 166 |
| Msa1149200 | MtrunA17_Chr8g0354621 | 51.316 | 152 | 61 | 1 | 331 | 469 | 2 | 153 | 2.07e-45 | 155 |
| Msa1149200 | MtrunA17_Chr5g0401791 | 28.750 | 480 | 291 | 16 | 5 | 467 | 81 | 526 | 3.98e-38 | 145 |
| Msa1149200 | MtrunA17_Chr5g0439721 | 29.888 | 445 | 236 | 13 | 41 | 467 | 46 | 432 | 3.37e-37 | 142 |
| Msa1149200 | MtrunA17_Chr8g0354611 | 36.017 | 236 | 109 | 6 | 25 | 252 | 24 | 225 | 3.86e-34 | 129 |
| Msa1149200 | MtrunA17_Chr5g0439681 | 40.678 | 177 | 100 | 2 | 292 | 467 | 136 | 308 | 5.56e-32 | 124 |
| Msa1149200 | MtrunA17_Chr8g0352501 | 32.031 | 256 | 121 | 8 | 48 | 286 | 7 | 226 | 3.69e-28 | 111 |
| Msa1149200 | MtrunA17_Chr8g0334971 | 25.974 | 462 | 274 | 12 | 27 | 468 | 29 | 442 | 5.67e-28 | 115 |
| Msa1149200 | MtrunA17_Chr5g0440401 | 33.772 | 228 | 135 | 5 | 241 | 467 | 2 | 214 | 8.61e-26 | 105 |
| Msa1149200 | MtrunA17_Chr8g0335061 | 24.115 | 452 | 276 | 12 | 27 | 459 | 29 | 432 | 1.28e-25 | 108 |
| Msa1149200 | MtrunA17_Chr8g0334951 | 26.000 | 400 | 229 | 13 | 44 | 424 | 46 | 397 | 7.67e-24 | 103 |
| Msa1149200 | MtrunA17_Chr2g0297831 | 24.946 | 465 | 278 | 16 | 12 | 463 | 54 | 460 | 4.57e-23 | 102 |
| Msa1149200 | MtrunA17_Chr3g0118601 | 24.176 | 455 | 284 | 13 | 23 | 463 | 38 | 445 | 6.59e-23 | 100 |
| Msa1149200 | MtrunA17_Chr8g0354871 | 31.855 | 248 | 137 | 8 | 231 | 467 | 155 | 381 | 2.01e-22 | 99.0 |
| Msa1149200 | MtrunA17_Chr2g0297821 | 31.319 | 182 | 116 | 7 | 293 | 468 | 4 | 182 | 2.64e-21 | 91.3 |
| Msa1149200 | MtrunA17_Chr2g0300311 | 24.829 | 439 | 254 | 17 | 42 | 463 | 65 | 444 | 9.61e-21 | 94.7 |
| Msa1149200 | MtrunA17_Chr8g0334911 | 25.587 | 426 | 228 | 12 | 27 | 424 | 30 | 394 | 1.30e-20 | 94.0 |
| Msa1149200 | MtrunA17_Chr8g0335011 | 24.086 | 465 | 296 | 13 | 37 | 462 | 46 | 492 | 2.21e-20 | 94.0 |
| Msa1149200 | MtrunA17_Chr8g0335021 | 23.894 | 452 | 274 | 14 | 41 | 463 | 41 | 451 | 4.69e-20 | 92.4 |
| Msa1149200 | MtrunA17_Chr7g0265891 | 23.146 | 445 | 261 | 11 | 42 | 466 | 66 | 449 | 7.51e-19 | 89.0 |
| Msa1149200 | MtrunA17_Chr8g0335071 | 23.579 | 475 | 298 | 18 | 6 | 457 | 18 | 450 | 3.05e-18 | 87.0 |
| Msa1149200 | MtrunA17_Chr6g0452561 | 22.870 | 446 | 258 | 12 | 41 | 463 | 39 | 421 | 3.68e-17 | 83.6 |
| Msa1149200 | MtrunA17_Chr6g0452161 | 24.545 | 440 | 261 | 14 | 41 | 467 | 39 | 420 | 7.94e-17 | 82.4 |
| Msa1149200 | MtrunA17_Chr6g0452551 | 24.771 | 436 | 253 | 15 | 37 | 463 | 35 | 404 | 1.82e-16 | 81.3 |
| Msa1149200 | MtrunA17_Chr6g0452611 | 25.400 | 437 | 250 | 15 | 37 | 463 | 34 | 404 | 2.91e-15 | 77.4 |
| Msa1149200 | MtrunA17_Chr4g0002901 | 27.358 | 212 | 142 | 5 | 260 | 467 | 347 | 550 | 9.44e-13 | 70.5 |
| Msa1149200 | MtrunA17_Chr7g0220521 | 30.303 | 165 | 108 | 4 | 305 | 464 | 375 | 537 | 9.54e-13 | 70.5 |
| Msa1149200 | MtrunA17_Chr4g0002911 | 28.646 | 192 | 126 | 4 | 280 | 467 | 364 | 548 | 1.27e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149200 | AT3G50120.1 | 29.218 | 486 | 276 | 19 | 5 | 467 | 83 | 523 | 9.63e-43 | 159 |
| Msa1149200 | AT3G50180.1 | 27.721 | 487 | 262 | 15 | 5 | 466 | 158 | 579 | 1.86e-39 | 150 |
| Msa1149200 | AT3G50170.1 | 28.131 | 487 | 278 | 16 | 5 | 467 | 93 | 531 | 4.19e-37 | 143 |
| Msa1149200 | AT3G50130.1 | 28.926 | 484 | 281 | 20 | 5 | 469 | 119 | 558 | 5.05e-35 | 137 |
| Msa1149200 | AT3G50160.1 | 27.333 | 450 | 256 | 12 | 27 | 467 | 106 | 493 | 1.39e-34 | 135 |
| Msa1149200 | AT3G50140.1 | 28.092 | 477 | 293 | 16 | 6 | 469 | 94 | 533 | 1.43e-34 | 136 |
| Msa1149200 | AT3G50150.1 | 27.521 | 476 | 288 | 15 | 5 | 467 | 70 | 501 | 3.87e-33 | 131 |
| Msa1149200 | AT5G22540.1 | 26.067 | 445 | 248 | 13 | 42 | 466 | 46 | 429 | 1.43e-28 | 117 |
| Msa1149200 | AT4G31980.1 | 26.879 | 439 | 235 | 13 | 44 | 467 | 310 | 677 | 1.52e-27 | 116 |
| Msa1149200 | AT5G11290.2 | 25.754 | 431 | 244 | 11 | 44 | 463 | 50 | 415 | 3.57e-26 | 110 |
| Msa1149200 | AT3G47250.3 | 25.513 | 439 | 272 | 15 | 42 | 467 | 76 | 472 | 1.68e-25 | 109 |
| Msa1149200 | AT3G47250.2 | 25.513 | 439 | 272 | 15 | 42 | 467 | 76 | 472 | 1.68e-25 | 109 |
| Msa1149200 | AT3G47250.1 | 25.513 | 439 | 272 | 15 | 42 | 467 | 76 | 472 | 1.68e-25 | 109 |
| Msa1149200 | AT3G50190.1 | 25.000 | 476 | 276 | 16 | 6 | 467 | 77 | 485 | 5.68e-25 | 107 |
| Msa1149200 | AT3G47200.1 | 25.676 | 444 | 263 | 17 | 42 | 467 | 61 | 455 | 1.99e-24 | 106 |
| Msa1149200 | AT3G47200.2 | 25.676 | 444 | 263 | 17 | 42 | 467 | 61 | 455 | 1.99e-24 | 106 |
| Msa1149200 | AT5G22550.2 | 25.498 | 502 | 266 | 20 | 17 | 466 | 36 | 481 | 2.29e-24 | 106 |
| Msa1149200 | AT3G44710.1 | 24.516 | 465 | 287 | 15 | 38 | 466 | 59 | 495 | 2.45e-23 | 103 |
| Msa1149200 | AT2G36430.1 | 25.057 | 435 | 261 | 14 | 44 | 467 | 62 | 442 | 1.21e-22 | 100 |
| Msa1149200 | AT2G44930.1 | 24.684 | 474 | 260 | 16 | 27 | 467 | 86 | 495 | 5.58e-19 | 90.1 |
| Msa1149200 | AT3G60470.1 | 24.805 | 512 | 295 | 18 | 27 | 463 | 34 | 530 | 9.62e-19 | 89.4 |
| Msa1149200 | AT5G11290.1 | 24.634 | 410 | 233 | 11 | 65 | 463 | 2 | 346 | 9.99e-19 | 87.8 |
| Msa1149200 | AT2G28580.6 | 24.603 | 504 | 278 | 21 | 1 | 463 | 1 | 443 | 2.17e-18 | 87.8 |
| Msa1149200 | AT2G28580.2 | 24.409 | 508 | 282 | 21 | 1 | 467 | 83 | 529 | 2.47e-18 | 88.2 |
| Msa1149200 | AT2G28580.4 | 23.251 | 486 | 298 | 16 | 1 | 467 | 83 | 512 | 2.63e-18 | 88.2 |
| Msa1149200 | AT2G28580.5 | 23.251 | 486 | 298 | 16 | 1 | 467 | 69 | 498 | 2.66e-18 | 87.8 |
| Msa1149200 | AT2G28580.1 | 24.409 | 508 | 282 | 21 | 1 | 467 | 69 | 515 | 3.23e-18 | 87.8 |
| Msa1149200 | AT5G22550.1 | 26.113 | 337 | 184 | 11 | 162 | 466 | 129 | 432 | 1.64e-16 | 82.0 |
| Msa1149200 | AT3G47210.1 | 21.782 | 404 | 245 | 12 | 44 | 432 | 110 | 457 | 1.28e-15 | 79.3 |
| Msa1149200 | AT1G67150.4 | 30.332 | 211 | 139 | 5 | 255 | 463 | 194 | 398 | 9.96e-15 | 76.3 |
| Msa1149200 | AT1G67150.1 | 30.332 | 211 | 139 | 5 | 255 | 463 | 194 | 398 | 9.96e-15 | 76.3 |
| Msa1149200 | AT1G67150.2 | 30.332 | 211 | 139 | 5 | 255 | 463 | 198 | 402 | 1.08e-14 | 76.3 |
| Msa1149200 | AT1G67150.3 | 30.688 | 189 | 124 | 4 | 276 | 463 | 173 | 355 | 1.17e-14 | 75.9 |
| Msa1149200 | AT1G65985.1 | 24.558 | 452 | 271 | 18 | 25 | 445 | 14 | 426 | 2.59e-13 | 72.4 |
| Msa1149200 | AT1G65985.2 | 24.558 | 452 | 271 | 18 | 25 | 445 | 14 | 426 | 2.59e-13 | 72.4 |
| Msa1149200 | AT3G02645.1 | 27.607 | 163 | 112 | 4 | 286 | 446 | 340 | 498 | 1.60e-11 | 67.0 |
Find 94 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCTTCGGTCGTGAATTT+TGG | 0.156740 | 7_4:-30364331 | None:intergenic |
| TCTCCTTCTCCCTTTCCTTT+TGG | 0.204710 | 7_4:-30364917 | None:intergenic |
| GATGAACTGAAGGGTCATTT+TGG | 0.252217 | 7_4:+30364554 | Msa1149200:CDS |
| CATCATTGGGCCACACTAGA+TGG | 0.266553 | 7_4:+30364863 | Msa1149200:CDS |
| CTCAATTCCTTCACATCTTC+AGG | 0.273996 | 7_4:-30365791 | None:intergenic |
| ACCATGTCCTTCTCCTTATC+TGG | 0.307778 | 7_4:-30364893 | None:intergenic |
| CGCAGCAAGGAATGCAATAA+TGG | 0.328608 | 7_4:-30366008 | None:intergenic |
| TCGTAGTCGTTCTCAAAATC+TGG | 0.330637 | 7_4:-30365725 | None:intergenic |
| GGCAAGTCTCTTGAAGGCTT+TGG | 0.346444 | 7_4:+30364599 | Msa1149200:CDS |
| GTGAAGGAATTGAGATCAAA+AGG | 0.357359 | 7_4:+30365800 | Msa1149200:CDS |
| GACACATCTCATACGCTATC+AGG | 0.376818 | 7_4:-30365703 | None:intergenic |
| AATATCTCTCAACCATTTGA+TGG | 0.386517 | 7_4:+30364253 | Msa1149200:exon |
| ACCAGGGCAGATGAATATTA+AGG | 0.391712 | 7_4:+30364706 | Msa1149200:CDS |
| TCTTGCACCCTTTGTATCTT+CGG | 0.392365 | 7_4:-30364344 | None:intergenic |
| GAATATTAAGGTTGATCAAC+TGG | 0.394486 | 7_4:+30364718 | Msa1149200:CDS |
| AGTTCCTCGACTGTCATCAT+TGG | 0.406295 | 7_4:+30364849 | Msa1149200:CDS |
| CACTTACTTCAGTAATCCTT+GGG | 0.409121 | 7_4:+30365985 | Msa1149200:CDS |
| CTGCCCTGGTTCATCAAGCT+TGG | 0.428492 | 7_4:-30364693 | None:intergenic |
| ACACTTACTTCAGTAATCCT+TGG | 0.432942 | 7_4:+30365984 | Msa1149200:CDS |
| TTAACTGGCAAGTCTCTTGA+AGG | 0.438518 | 7_4:+30364593 | Msa1149200:CDS |
| TAGGAGAGAAGTACAAGCTT+AGG | 0.447232 | 7_4:+30364459 | Msa1149200:CDS |
| AGGACCTATCGACACTAACT+TGG | 0.449064 | 7_4:-30364408 | None:intergenic |
| TCTCATACGCTATCAGGTTA+AGG | 0.449897 | 7_4:-30365697 | None:intergenic |
| GACAACACAAATCTGAAGTT+AGG | 0.450449 | 7_4:+30364440 | Msa1149200:CDS |
| CAATATCATAAGTACTGACT+TGG | 0.453322 | 7_4:+30365871 | Msa1149200:CDS |
| GTCTCTGACTGTGACTCATT+TGG | 0.454138 | 7_4:-30364962 | None:intergenic |
| GTGTCGTCCACAACGATCTC+AGG | 0.471457 | 7_4:-30365659 | None:intergenic |
| CTCTAACTTTCATTCAAACA+TGG | 0.476905 | 7_4:+30366044 | Msa1149200:CDS |
| TCAACTGGTTCTTGTGATGA+TGG | 0.477187 | 7_4:+30364733 | Msa1149200:CDS |
| TCGTGGATGTTGTTCGTGGA+TGG | 0.483877 | 7_4:+30364641 | Msa1149200:CDS |
| TCAGATTTGTGTTGTCATGA+TGG | 0.486562 | 7_4:-30364433 | None:intergenic |
| ATGCAAGACTTGGATAGCAC+TGG | 0.494292 | 7_4:+30365955 | Msa1149200:CDS |
| GACTGTGACTCATTTGGTAA+TGG | 0.495269 | 7_4:-30364956 | None:intergenic |
| GTTCCTCGACTGTCATCATT+GGG | 0.498219 | 7_4:+30364850 | Msa1149200:CDS |
| TAGTTTGGGATGCCATCAAA+TGG | 0.500207 | 7_4:-30364265 | None:intergenic |
| AACATGGTTTGCGGTTGACC+CGG | 0.504426 | 7_4:+30366060 | Msa1149200:CDS |
| AATAGCTTGAGTACTTCATA+AGG | 0.505382 | 7_4:-30364782 | None:intergenic |
| ATGTCAAGATGATGACATAC+AGG | 0.508534 | 7_4:+30365528 | Msa1149200:CDS |
| TTTCATTCAAACATGGTTTG+CGG | 0.509065 | 7_4:+30366051 | Msa1149200:CDS |
| AAGCTAACAACAACAAGAAA+CGG | 0.513313 | 7_4:+30365459 | Msa1149200:CDS |
| GAGAGAAGTACAAGCTTAGG+TGG | 0.514812 | 7_4:+30364462 | Msa1149200:CDS |
| ATGAAGTACTCAAGCTATTG+TGG | 0.515875 | 7_4:+30364786 | Msa1149200:CDS |
| ACCTTAATATTCATCTGCCC+TGG | 0.515931 | 7_4:-30364707 | None:intergenic |
| AAAGCCAAGCTTGATGAACC+AGG | 0.516001 | 7_4:+30364689 | Msa1149200:CDS |
| TGAAGGAATTGAGATCAAAA+GGG | 0.519868 | 7_4:+30365801 | Msa1149200:CDS |
| GAGAAGGACATGGTTCCAAA+AGG | 0.526181 | 7_4:+30364902 | Msa1149200:CDS |
| ACAGACATAGATTTCTCTGC+AGG | 0.532054 | 7_4:+30365611 | Msa1149200:CDS |
| AGATGGGTCACAGCCAGATA+AGG | 0.532395 | 7_4:+30364880 | Msa1149200:CDS |
| ACCACCTTTACTAGCAAGCC+GGG | 0.534299 | 7_4:-30366078 | None:intergenic |
| ATACAAGATCTAAGAGCAGT+AGG | 0.542239 | 7_4:+30365554 | Msa1149200:CDS |
| ATCATTGGGCCACACTAGAT+GGG | 0.548072 | 7_4:+30364864 | Msa1149200:CDS |
| TGACTCATTTGGTAATGGTA+TGG | 0.549376 | 7_4:-30364951 | None:intergenic |
| AACCACCTTTACTAGCAAGC+CGG | 0.550102 | 7_4:-30366079 | None:intergenic |
| TTTGAATGAAAGTTAGAGCA+AGG | 0.557677 | 7_4:-30366039 | None:intergenic |
| ACTTATGATATTGAAAAGAT+CGG | 0.563500 | 7_4:-30365861 | None:intergenic |
| TAGATCCTCTGGAATGTGTC+CGG | 0.564886 | 7_4:-30364507 | None:intergenic |
| GACTTAAGTCAAGCGCGACA+CGG | 0.565085 | 7_4:+30365582 | Msa1149200:CDS |
| CCTCACTACATCTAATTCCA+AGG | 0.567086 | 7_4:+30365021 | Msa1149200:CDS |
| CAACGTCCTCATCACTCCCA+AGG | 0.569161 | 7_4:-30365838 | None:intergenic |
| GCAGAGAAATCTATGTCTGT+TGG | 0.574571 | 7_4:-30365608 | None:intergenic |
| TTCACGACCGAAGATACAAA+GGG | 0.574977 | 7_4:+30364337 | Msa1149200:CDS |
| AGATAACATTGATGAACTGA+AGG | 0.576877 | 7_4:+30364544 | Msa1149200:CDS |
| GACATGGTTCCAAAAGGAAA+GGG | 0.580569 | 7_4:+30364908 | Msa1149200:CDS |
| GGACATGGTTCCAAAAGGAA+AGG | 0.581017 | 7_4:+30364907 | Msa1149200:CDS |
| TGCAAGACTTGGATAGCACT+GGG | 0.590251 | 7_4:+30365956 | Msa1149200:CDS |
| GCCTCGAAGAAAAGCTGTCG+TGG | 0.592322 | 7_4:+30364624 | Msa1149200:CDS |
| ATTCACGACCGAAGATACAA+AGG | 0.594865 | 7_4:+30364336 | Msa1149200:CDS |
| TTTGTGTTGTCATGATGGAT+AGG | 0.600865 | 7_4:-30364428 | None:intergenic |
| TGACCGTCCTGAAGATGTGA+AGG | 0.603479 | 7_4:+30365784 | Msa1149200:CDS |
| AACGTCCTCATCACTCCCAA+GGG | 0.606261 | 7_4:-30365837 | None:intergenic |
| GACTCTTCCTGAGATCGTTG+TGG | 0.609718 | 7_4:+30365652 | Msa1149200:CDS |
| ACATAGATTTCTCTGCAGGA+TGG | 0.615322 | 7_4:+30365615 | Msa1149200:CDS |
| GGACCTATCGACACTAACTT+GGG | 0.618156 | 7_4:-30364407 | None:intergenic |
| ACTGTAATAAATGCAAGACT+TGG | 0.618169 | 7_4:+30365945 | Msa1149200:CDS |
| GCTGTCGTGGATGTTGTTCG+TGG | 0.618355 | 7_4:+30364637 | Msa1149200:CDS |
| CAATTCCCTTGGGAGTGATG+AGG | 0.622172 | 7_4:+30365832 | Msa1149200:CDS |
| GTTCCAAAAGGAAAGGGAGA+AGG | 0.623553 | 7_4:+30364914 | Msa1149200:CDS |
| CAAGGGCGATAAACGCAGCA+AGG | 0.625016 | 7_4:-30366021 | None:intergenic |
| TGGAAAGACGAAGACGAGAG+TGG | 0.625884 | 7_4:+30364806 | Msa1149200:CDS |
| TTGAATGAAAGTTAGAGCAA+GGG | 0.631837 | 7_4:-30366038 | None:intergenic |
| TGGCTGTGACCCATCTAGTG+TGG | 0.636757 | 7_4:-30364873 | None:intergenic |
| TGAAGATCAAGAAGATGAGT+CGG | 0.636773 | 7_4:-30364986 | None:intergenic |
| GCGAAATATATAGAAAACAC+CGG | 0.647355 | 7_4:+30364488 | Msa1149200:CDS |
| GATAACATTGATGAACTGAA+GGG | 0.648035 | 7_4:+30364545 | Msa1149200:CDS |
| AGGAATGCAATAATGGCCCA+AGG | 0.648170 | 7_4:-30366001 | None:intergenic |
| AGAGAAGTACAAGCTTAGGT+GGG | 0.649064 | 7_4:+30364463 | Msa1149200:CDS |
| ATTCCTTCACATCTTCAGGA+CGG | 0.651604 | 7_4:-30365787 | None:intergenic |
| GTCACAGCCAGATAAGGAGA+AGG | 0.660235 | 7_4:+30364886 | Msa1149200:CDS |
| TCACCCAAGTTAGTGTCGAT+AGG | 0.661712 | 7_4:+30364404 | Msa1149200:CDS |
| AAGCCAAGCTTGATGAACCA+GGG | 0.666740 | 7_4:+30364690 | Msa1149200:CDS |
| GCCAGATAAGGAGAAGGACA+TGG | 0.678771 | 7_4:+30364892 | Msa1149200:CDS |
| CCTTGGAATTAGATGTAGTG+AGG | 0.704253 | 7_4:-30365021 | None:intergenic |
| TTAAGTCAAGCGCGACACGG+AGG | 0.726221 | 7_4:+30365585 | Msa1149200:CDS |
| AAACACCGGACACATTCCAG+AGG | 0.748698 | 7_4:+30364502 | Msa1149200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTCTTTAATAGTTT+GGG | - | chr7_4:30364282-30364301 | None:intergenic | 10.0% |
| !!! | TCAAAATATATTTTTGTATT+AGG | - | chr7_4:30365899-30365918 | None:intergenic | 10.0% |
| !!! | AAATTTTTCTTTAATAGTTT+GGG | - | chr7_4:30364282-30364301 | None:intergenic | 10.0% |
| !!! | TCAAAATATATTTTTGTATT+AGG | - | chr7_4:30365899-30365918 | None:intergenic | 10.0% |
| !!! | CAAATTTTTCTTTAATAGTT+TGG | - | chr7_4:30364283-30364302 | None:intergenic | 15.0% |
| !! | AACTATTAAAGAAAAATTTG+TGG | + | chr7_4:30364283-30364302 | Msa1149200:CDS | 15.0% |
| !!! | CAAATTTTTCTTTAATAGTT+TGG | - | chr7_4:30364283-30364302 | None:intergenic | 15.0% |
| !! | AACTATTAAAGAAAAATTTG+TGG | + | chr7_4:30364283-30364302 | Msa1149200:CDS | 15.0% |
| !! | TACAAACAAACAAAACTATT+AGG | + | chr7_4:30365099-30365118 | Msa1149200:intron | 20.0% |
| !! | TACCATTATCATAATTACAA+AGG | + | chr7_4:30365166-30365185 | Msa1149200:intron | 20.0% |
| !! | ACCATTATCATAATTACAAA+GGG | + | chr7_4:30365167-30365186 | Msa1149200:intron | 20.0% |
| !! | AATATCAAAAGTCAAGAAAA+GGG | - | chr7_4:30365284-30365303 | None:intergenic | 20.0% |
| !! | AAATATCAAAAGTCAAGAAA+AGG | - | chr7_4:30365285-30365304 | None:intergenic | 20.0% |
| !!! | TTGACTTTTGATATTTTTGA+GGG | + | chr7_4:30365289-30365308 | Msa1149200:intron | 20.0% |
| !!! | TGTTTTAATCAGAAATGAAT+TGG | - | chr7_4:30365423-30365442 | None:intergenic | 20.0% |
| !! | ACTTATGATATTGAAAAGAT+CGG | - | chr7_4:30365864-30365883 | None:intergenic | 20.0% |
| !! | TACAAACAAACAAAACTATT+AGG | + | chr7_4:30365099-30365118 | Msa1149200:intron | 20.0% |
| !! | TACCATTATCATAATTACAA+AGG | + | chr7_4:30365166-30365185 | Msa1149200:intron | 20.0% |
| !! | ACCATTATCATAATTACAAA+GGG | + | chr7_4:30365167-30365186 | Msa1149200:intron | 20.0% |
| !! | AATATCAAAAGTCAAGAAAA+GGG | - | chr7_4:30365284-30365303 | None:intergenic | 20.0% |
| !! | AAATATCAAAAGTCAAGAAA+AGG | - | chr7_4:30365285-30365304 | None:intergenic | 20.0% |
| !!! | TTGACTTTTGATATTTTTGA+GGG | + | chr7_4:30365289-30365308 | Msa1149200:intron | 20.0% |
| !!! | TGTTTTAATCAGAAATGAAT+TGG | - | chr7_4:30365423-30365442 | None:intergenic | 20.0% |
| !! | ACTTATGATATTGAAAAGAT+CGG | - | chr7_4:30365864-30365883 | None:intergenic | 20.0% |
| !!! | TTGTTATTTCTATTGTACCT+TGG | - | chr7_4:30365041-30365060 | None:intergenic | 25.0% |
| ! | CCATTATCATAATTACAAAG+GGG | + | chr7_4:30365168-30365187 | Msa1149200:intron | 25.0% |
| ! | GTGTACATAATAGTAATTAG+AGG | + | chr7_4:30365209-30365228 | Msa1149200:intron | 25.0% |
| !!! | CTTGACTTTTGATATTTTTG+AGG | + | chr7_4:30365288-30365307 | Msa1149200:intron | 25.0% |
| !!! | TGACTTTTGATATTTTTGAG+GGG | + | chr7_4:30365290-30365309 | Msa1149200:intron | 25.0% |
| !!! | TTGTTATTTCTATTGTACCT+TGG | - | chr7_4:30365041-30365060 | None:intergenic | 25.0% |
| ! | CCATTATCATAATTACAAAG+GGG | + | chr7_4:30365168-30365187 | Msa1149200:intron | 25.0% |
| ! | GTGTACATAATAGTAATTAG+AGG | + | chr7_4:30365209-30365228 | Msa1149200:intron | 25.0% |
| !!! | CTTGACTTTTGATATTTTTG+AGG | + | chr7_4:30365288-30365307 | Msa1149200:intron | 25.0% |
| !!! | TGACTTTTGATATTTTTGAG+GGG | + | chr7_4:30365290-30365309 | Msa1149200:intron | 25.0% |
| AATATCTCTCAACCATTTGA+TGG | + | chr7_4:30364253-30364272 | Msa1149200:exon | 30.0% | |
| GCGAAATATATAGAAAACAC+CGG | + | chr7_4:30364488-30364507 | Msa1149200:CDS | 30.0% | |
| ! | ATCTTTTTATGTAGATCCTC+TGG | - | chr7_4:30364521-30364540 | None:intergenic | 30.0% |
| AGATAACATTGATGAACTGA+AGG | + | chr7_4:30364544-30364563 | Msa1149200:CDS | 30.0% | |
| GATAACATTGATGAACTGAA+GGG | + | chr7_4:30364545-30364564 | Msa1149200:CDS | 30.0% | |
| !!! | GACGATGTTTTAACTTTAAC+TGG | + | chr7_4:30364578-30364597 | Msa1149200:CDS | 30.0% |
| ! | GAATATTAAGGTTGATCAAC+TGG | + | chr7_4:30364718-30364737 | Msa1149200:CDS | 30.0% |
| AATAGCTTGAGTACTTCATA+AGG | - | chr7_4:30364785-30364804 | None:intergenic | 30.0% | |
| CCCCTTTGTAATTATGATAA+TGG | - | chr7_4:30365171-30365190 | None:intergenic | 30.0% | |
| TTATCATAATTACAAAGGGG+AGG | + | chr7_4:30365171-30365190 | Msa1149200:intron | 30.0% | |
| !! | GACTTTTGATATTTTTGAGG+GGG | + | chr7_4:30365291-30365310 | Msa1149200:intron | 30.0% |
| AAGCTAACAACAACAAGAAA+CGG | + | chr7_4:30365459-30365478 | Msa1149200:CDS | 30.0% | |
| TGAAGGAATTGAGATCAAAA+GGG | + | chr7_4:30365801-30365820 | Msa1149200:CDS | 30.0% | |
| !! | CAATATCATAAGTACTGACT+TGG | + | chr7_4:30365871-30365890 | Msa1149200:CDS | 30.0% |
| ACTGTAATAAATGCAAGACT+TGG | + | chr7_4:30365945-30365964 | Msa1149200:CDS | 30.0% | |
| TTGAATGAAAGTTAGAGCAA+GGG | - | chr7_4:30366041-30366060 | None:intergenic | 30.0% | |
| TTTGAATGAAAGTTAGAGCA+AGG | - | chr7_4:30366042-30366061 | None:intergenic | 30.0% | |
| CTCTAACTTTCATTCAAACA+TGG | + | chr7_4:30366044-30366063 | Msa1149200:CDS | 30.0% | |
| TTTCATTCAAACATGGTTTG+CGG | + | chr7_4:30366051-30366070 | Msa1149200:CDS | 30.0% | |
| AATATCTCTCAACCATTTGA+TGG | + | chr7_4:30364253-30364272 | Msa1149200:exon | 30.0% | |
| GCGAAATATATAGAAAACAC+CGG | + | chr7_4:30364488-30364507 | Msa1149200:CDS | 30.0% | |
| ! | ATCTTTTTATGTAGATCCTC+TGG | - | chr7_4:30364521-30364540 | None:intergenic | 30.0% |
| AGATAACATTGATGAACTGA+AGG | + | chr7_4:30364544-30364563 | Msa1149200:CDS | 30.0% | |
| GATAACATTGATGAACTGAA+GGG | + | chr7_4:30364545-30364564 | Msa1149200:CDS | 30.0% | |
| !!! | GACGATGTTTTAACTTTAAC+TGG | + | chr7_4:30364578-30364597 | Msa1149200:CDS | 30.0% |
| ! | GAATATTAAGGTTGATCAAC+TGG | + | chr7_4:30364718-30364737 | Msa1149200:CDS | 30.0% |
| AATAGCTTGAGTACTTCATA+AGG | - | chr7_4:30364785-30364804 | None:intergenic | 30.0% | |
| CCCCTTTGTAATTATGATAA+TGG | - | chr7_4:30365171-30365190 | None:intergenic | 30.0% | |
| TTATCATAATTACAAAGGGG+AGG | + | chr7_4:30365171-30365190 | Msa1149200:intron | 30.0% | |
| !! | GACTTTTGATATTTTTGAGG+GGG | + | chr7_4:30365291-30365310 | Msa1149200:intron | 30.0% |
| AAGCTAACAACAACAAGAAA+CGG | + | chr7_4:30365459-30365478 | Msa1149200:CDS | 30.0% | |
| TGAAGGAATTGAGATCAAAA+GGG | + | chr7_4:30365801-30365820 | Msa1149200:CDS | 30.0% | |
| !! | CAATATCATAAGTACTGACT+TGG | + | chr7_4:30365871-30365890 | Msa1149200:CDS | 30.0% |
| ACTGTAATAAATGCAAGACT+TGG | + | chr7_4:30365945-30365964 | Msa1149200:CDS | 30.0% | |
| TTGAATGAAAGTTAGAGCAA+GGG | - | chr7_4:30366041-30366060 | None:intergenic | 30.0% | |
| TTTGAATGAAAGTTAGAGCA+AGG | - | chr7_4:30366042-30366061 | None:intergenic | 30.0% | |
| CTCTAACTTTCATTCAAACA+TGG | + | chr7_4:30366044-30366063 | Msa1149200:CDS | 30.0% | |
| TTTCATTCAAACATGGTTTG+CGG | + | chr7_4:30366051-30366070 | Msa1149200:CDS | 30.0% | |
| ! | TATCTTCGGTCGTGAATTTT+GGG | - | chr7_4:30364333-30364352 | None:intergenic | 35.0% |
| !! | TTTGTGTTGTCATGATGGAT+AGG | - | chr7_4:30364431-30364450 | None:intergenic | 35.0% |
| TCAGATTTGTGTTGTCATGA+TGG | - | chr7_4:30364436-30364455 | None:intergenic | 35.0% | |
| ! | GACAACACAAATCTGAAGTT+AGG | + | chr7_4:30364440-30364459 | Msa1149200:CDS | 35.0% |
| ! | ATGAAGTACTCAAGCTATTG+TGG | + | chr7_4:30364786-30364805 | Msa1149200:CDS | 35.0% |
| !! | TGACTCATTTGGTAATGGTA+TGG | - | chr7_4:30364954-30364973 | None:intergenic | 35.0% |
| TGAAGATCAAGAAGATGAGT+CGG | - | chr7_4:30364989-30365008 | None:intergenic | 35.0% | |
| ATGTCAAGATGATGACATAC+AGG | + | chr7_4:30365528-30365547 | Msa1149200:CDS | 35.0% | |
| ATACAAGATCTAAGAGCAGT+AGG | + | chr7_4:30365554-30365573 | Msa1149200:CDS | 35.0% | |
| ! | TTGTTCTTTTGCAGCTTTCA+TGG | + | chr7_4:30365751-30365770 | Msa1149200:CDS | 35.0% |
| GTGAAGGAATTGAGATCAAA+AGG | + | chr7_4:30365800-30365819 | Msa1149200:CDS | 35.0% | |
| ACACTTACTTCAGTAATCCT+TGG | + | chr7_4:30365984-30366003 | Msa1149200:CDS | 35.0% | |
| CACTTACTTCAGTAATCCTT+GGG | + | chr7_4:30365985-30366004 | Msa1149200:CDS | 35.0% | |
| ! | TATCTTCGGTCGTGAATTTT+GGG | - | chr7_4:30364333-30364352 | None:intergenic | 35.0% |
| !! | TTTGTGTTGTCATGATGGAT+AGG | - | chr7_4:30364431-30364450 | None:intergenic | 35.0% |
| TCAGATTTGTGTTGTCATGA+TGG | - | chr7_4:30364436-30364455 | None:intergenic | 35.0% | |
| ! | GACAACACAAATCTGAAGTT+AGG | + | chr7_4:30364440-30364459 | Msa1149200:CDS | 35.0% |
| ! | ATGAAGTACTCAAGCTATTG+TGG | + | chr7_4:30364786-30364805 | Msa1149200:CDS | 35.0% |
| !! | TGACTCATTTGGTAATGGTA+TGG | - | chr7_4:30364954-30364973 | None:intergenic | 35.0% |
| TGAAGATCAAGAAGATGAGT+CGG | - | chr7_4:30364989-30365008 | None:intergenic | 35.0% | |
| ATGTCAAGATGATGACATAC+AGG | + | chr7_4:30365528-30365547 | Msa1149200:CDS | 35.0% | |
| ATACAAGATCTAAGAGCAGT+AGG | + | chr7_4:30365554-30365573 | Msa1149200:CDS | 35.0% | |
| ! | TTGTTCTTTTGCAGCTTTCA+TGG | + | chr7_4:30365751-30365770 | Msa1149200:CDS | 35.0% |
| GTGAAGGAATTGAGATCAAA+AGG | + | chr7_4:30365800-30365819 | Msa1149200:CDS | 35.0% | |
| ACACTTACTTCAGTAATCCT+TGG | + | chr7_4:30365984-30366003 | Msa1149200:CDS | 35.0% | |
| CACTTACTTCAGTAATCCTT+GGG | + | chr7_4:30365985-30366004 | Msa1149200:CDS | 35.0% | |
| ! | TAGTTTGGGATGCCATCAAA+TGG | - | chr7_4:30364268-30364287 | None:intergenic | 40.0% |
| ! | GTATCTTCGGTCGTGAATTT+TGG | - | chr7_4:30364334-30364353 | None:intergenic | 40.0% |
| ATTCACGACCGAAGATACAA+AGG | + | chr7_4:30364336-30364355 | Msa1149200:CDS | 40.0% | |
| TTCACGACCGAAGATACAAA+GGG | + | chr7_4:30364337-30364356 | Msa1149200:CDS | 40.0% | |
| TCTTGCACCCTTTGTATCTT+CGG | - | chr7_4:30364347-30364366 | None:intergenic | 40.0% | |
| ! | TAGGAGAGAAGTACAAGCTT+AGG | + | chr7_4:30364459-30364478 | Msa1149200:CDS | 40.0% |
| ! | AGAGAAGTACAAGCTTAGGT+GGG | + | chr7_4:30364463-30364482 | Msa1149200:CDS | 40.0% |
| ! | GATGAACTGAAGGGTCATTT+TGG | + | chr7_4:30364554-30364573 | Msa1149200:CDS | 40.0% |
| TTAACTGGCAAGTCTCTTGA+AGG | + | chr7_4:30364593-30364612 | Msa1149200:CDS | 40.0% | |
| ACCAGGGCAGATGAATATTA+AGG | + | chr7_4:30364706-30364725 | Msa1149200:CDS | 40.0% | |
| ACCTTAATATTCATCTGCCC+TGG | - | chr7_4:30364710-30364729 | None:intergenic | 40.0% | |
| ! | TCAACTGGTTCTTGTGATGA+TGG | + | chr7_4:30364733-30364752 | Msa1149200:CDS | 40.0% |
| !!! | GATGATGGATGTGCTTTTGT+TGG | + | chr7_4:30364748-30364767 | Msa1149200:CDS | 40.0% |
| GACATGGTTCCAAAAGGAAA+GGG | + | chr7_4:30364908-30364927 | Msa1149200:CDS | 40.0% | |
| GACTGTGACTCATTTGGTAA+TGG | - | chr7_4:30364959-30364978 | None:intergenic | 40.0% | |
| CCTTGGAATTAGATGTAGTG+AGG | - | chr7_4:30365024-30365043 | None:intergenic | 40.0% | |
| CCTCACTACATCTAATTCCA+AGG | + | chr7_4:30365021-30365040 | Msa1149200:CDS | 40.0% | |
| GCAGAGAAATCTATGTCTGT+TGG | - | chr7_4:30365611-30365630 | None:intergenic | 40.0% | |
| ACAGACATAGATTTCTCTGC+AGG | + | chr7_4:30365611-30365630 | Msa1149200:CDS | 40.0% | |
| ACATAGATTTCTCTGCAGGA+TGG | + | chr7_4:30365615-30365634 | Msa1149200:CDS | 40.0% | |
| TCTCATACGCTATCAGGTTA+AGG | - | chr7_4:30365700-30365719 | None:intergenic | 40.0% | |
| TCGTAGTCGTTCTCAAAATC+TGG | - | chr7_4:30365728-30365747 | None:intergenic | 40.0% | |
| ATTCCTTCACATCTTCAGGA+CGG | - | chr7_4:30365790-30365809 | None:intergenic | 40.0% | |
| CTCAATTCCTTCACATCTTC+AGG | - | chr7_4:30365794-30365813 | None:intergenic | 40.0% | |
| ! | GGATTTTGCTCAATTCCCTT+GGG | + | chr7_4:30365822-30365841 | Msa1149200:CDS | 40.0% |
| ! | TAGTTTGGGATGCCATCAAA+TGG | - | chr7_4:30364268-30364287 | None:intergenic | 40.0% |
| ! | GTATCTTCGGTCGTGAATTT+TGG | - | chr7_4:30364334-30364353 | None:intergenic | 40.0% |
| ATTCACGACCGAAGATACAA+AGG | + | chr7_4:30364336-30364355 | Msa1149200:CDS | 40.0% | |
| TTCACGACCGAAGATACAAA+GGG | + | chr7_4:30364337-30364356 | Msa1149200:CDS | 40.0% | |
| TCTTGCACCCTTTGTATCTT+CGG | - | chr7_4:30364347-30364366 | None:intergenic | 40.0% | |
| ! | TAGGAGAGAAGTACAAGCTT+AGG | + | chr7_4:30364459-30364478 | Msa1149200:CDS | 40.0% |
| ! | AGAGAAGTACAAGCTTAGGT+GGG | + | chr7_4:30364463-30364482 | Msa1149200:CDS | 40.0% |
| ! | GATGAACTGAAGGGTCATTT+TGG | + | chr7_4:30364554-30364573 | Msa1149200:CDS | 40.0% |
| TTAACTGGCAAGTCTCTTGA+AGG | + | chr7_4:30364593-30364612 | Msa1149200:CDS | 40.0% | |
| ACCAGGGCAGATGAATATTA+AGG | + | chr7_4:30364706-30364725 | Msa1149200:CDS | 40.0% | |
| ACCTTAATATTCATCTGCCC+TGG | - | chr7_4:30364710-30364729 | None:intergenic | 40.0% | |
| ! | TCAACTGGTTCTTGTGATGA+TGG | + | chr7_4:30364733-30364752 | Msa1149200:CDS | 40.0% |
| !!! | GATGATGGATGTGCTTTTGT+TGG | + | chr7_4:30364748-30364767 | Msa1149200:CDS | 40.0% |
| GACATGGTTCCAAAAGGAAA+GGG | + | chr7_4:30364908-30364927 | Msa1149200:CDS | 40.0% | |
| GACTGTGACTCATTTGGTAA+TGG | - | chr7_4:30364959-30364978 | None:intergenic | 40.0% | |
| CCTTGGAATTAGATGTAGTG+AGG | - | chr7_4:30365024-30365043 | None:intergenic | 40.0% | |
| CCTCACTACATCTAATTCCA+AGG | + | chr7_4:30365021-30365040 | Msa1149200:CDS | 40.0% | |
| GCAGAGAAATCTATGTCTGT+TGG | - | chr7_4:30365611-30365630 | None:intergenic | 40.0% | |
| ACAGACATAGATTTCTCTGC+AGG | + | chr7_4:30365611-30365630 | Msa1149200:CDS | 40.0% | |
| ACATAGATTTCTCTGCAGGA+TGG | + | chr7_4:30365615-30365634 | Msa1149200:CDS | 40.0% | |
| TCTCATACGCTATCAGGTTA+AGG | - | chr7_4:30365700-30365719 | None:intergenic | 40.0% | |
| TCGTAGTCGTTCTCAAAATC+TGG | - | chr7_4:30365728-30365747 | None:intergenic | 40.0% | |
| ATTCCTTCACATCTTCAGGA+CGG | - | chr7_4:30365790-30365809 | None:intergenic | 40.0% | |
| CTCAATTCCTTCACATCTTC+AGG | - | chr7_4:30365794-30365813 | None:intergenic | 40.0% | |
| ! | GGATTTTGCTCAATTCCCTT+GGG | + | chr7_4:30365822-30365841 | Msa1149200:CDS | 40.0% |
| !! | TCACCCAAGTTAGTGTCGAT+AGG | + | chr7_4:30364404-30364423 | Msa1149200:CDS | 45.0% |
| GGACCTATCGACACTAACTT+GGG | - | chr7_4:30364410-30364429 | None:intergenic | 45.0% | |
| AGGACCTATCGACACTAACT+TGG | - | chr7_4:30364411-30364430 | None:intergenic | 45.0% | |
| ! | GAGAGAAGTACAAGCTTAGG+TGG | + | chr7_4:30364462-30364481 | Msa1149200:CDS | 45.0% |
| !! | TAGATCCTCTGGAATGTGTC+CGG | - | chr7_4:30364510-30364529 | None:intergenic | 45.0% |
| AAAGCCAAGCTTGATGAACC+AGG | + | chr7_4:30364689-30364708 | Msa1149200:CDS | 45.0% | |
| AAGCCAAGCTTGATGAACCA+GGG | + | chr7_4:30364690-30364709 | Msa1149200:CDS | 45.0% | |
| AGTTCCTCGACTGTCATCAT+TGG | + | chr7_4:30364849-30364868 | Msa1149200:CDS | 45.0% | |
| GTTCCTCGACTGTCATCATT+GGG | + | chr7_4:30364850-30364869 | Msa1149200:CDS | 45.0% | |
| ATCATTGGGCCACACTAGAT+GGG | + | chr7_4:30364864-30364883 | Msa1149200:CDS | 45.0% | |
| ACCATGTCCTTCTCCTTATC+TGG | - | chr7_4:30364896-30364915 | None:intergenic | 45.0% | |
| GAGAAGGACATGGTTCCAAA+AGG | + | chr7_4:30364902-30364921 | Msa1149200:CDS | 45.0% | |
| GGACATGGTTCCAAAAGGAA+AGG | + | chr7_4:30364907-30364926 | Msa1149200:CDS | 45.0% | |
| GTTCCAAAAGGAAAGGGAGA+AGG | + | chr7_4:30364914-30364933 | Msa1149200:CDS | 45.0% | |
| ! | TCTCCTTCTCCCTTTCCTTT+TGG | - | chr7_4:30364920-30364939 | None:intergenic | 45.0% |
| GTCTCTGACTGTGACTCATT+TGG | - | chr7_4:30364965-30364984 | None:intergenic | 45.0% | |
| GACACATCTCATACGCTATC+AGG | - | chr7_4:30365706-30365725 | None:intergenic | 45.0% | |
| ! | GGGATTTTGCTCAATTCCCT+TGG | + | chr7_4:30365821-30365840 | Msa1149200:CDS | 45.0% |
| ATGCAAGACTTGGATAGCAC+TGG | + | chr7_4:30365955-30365974 | Msa1149200:CDS | 45.0% | |
| TGCAAGACTTGGATAGCACT+GGG | + | chr7_4:30365956-30365975 | Msa1149200:CDS | 45.0% | |
| AGGAATGCAATAATGGCCCA+AGG | - | chr7_4:30366004-30366023 | None:intergenic | 45.0% | |
| CGCAGCAAGGAATGCAATAA+TGG | - | chr7_4:30366011-30366030 | None:intergenic | 45.0% | |
| !! | TCACCCAAGTTAGTGTCGAT+AGG | + | chr7_4:30364404-30364423 | Msa1149200:CDS | 45.0% |
| GGACCTATCGACACTAACTT+GGG | - | chr7_4:30364410-30364429 | None:intergenic | 45.0% | |
| AGGACCTATCGACACTAACT+TGG | - | chr7_4:30364411-30364430 | None:intergenic | 45.0% | |
| ! | GAGAGAAGTACAAGCTTAGG+TGG | + | chr7_4:30364462-30364481 | Msa1149200:CDS | 45.0% |
| !! | TAGATCCTCTGGAATGTGTC+CGG | - | chr7_4:30364510-30364529 | None:intergenic | 45.0% |
| AAAGCCAAGCTTGATGAACC+AGG | + | chr7_4:30364689-30364708 | Msa1149200:CDS | 45.0% | |
| AAGCCAAGCTTGATGAACCA+GGG | + | chr7_4:30364690-30364709 | Msa1149200:CDS | 45.0% | |
| AGTTCCTCGACTGTCATCAT+TGG | + | chr7_4:30364849-30364868 | Msa1149200:CDS | 45.0% | |
| GTTCCTCGACTGTCATCATT+GGG | + | chr7_4:30364850-30364869 | Msa1149200:CDS | 45.0% | |
| ATCATTGGGCCACACTAGAT+GGG | + | chr7_4:30364864-30364883 | Msa1149200:CDS | 45.0% | |
| ACCATGTCCTTCTCCTTATC+TGG | - | chr7_4:30364896-30364915 | None:intergenic | 45.0% | |
| GAGAAGGACATGGTTCCAAA+AGG | + | chr7_4:30364902-30364921 | Msa1149200:CDS | 45.0% | |
| GGACATGGTTCCAAAAGGAA+AGG | + | chr7_4:30364907-30364926 | Msa1149200:CDS | 45.0% | |
| GTTCCAAAAGGAAAGGGAGA+AGG | + | chr7_4:30364914-30364933 | Msa1149200:CDS | 45.0% | |
| ! | TCTCCTTCTCCCTTTCCTTT+TGG | - | chr7_4:30364920-30364939 | None:intergenic | 45.0% |
| GTCTCTGACTGTGACTCATT+TGG | - | chr7_4:30364965-30364984 | None:intergenic | 45.0% | |
| GACACATCTCATACGCTATC+AGG | - | chr7_4:30365706-30365725 | None:intergenic | 45.0% | |
| ! | GGGATTTTGCTCAATTCCCT+TGG | + | chr7_4:30365821-30365840 | Msa1149200:CDS | 45.0% |
| ATGCAAGACTTGGATAGCAC+TGG | + | chr7_4:30365955-30365974 | Msa1149200:CDS | 45.0% | |
| TGCAAGACTTGGATAGCACT+GGG | + | chr7_4:30365956-30365975 | Msa1149200:CDS | 45.0% | |
| AGGAATGCAATAATGGCCCA+AGG | - | chr7_4:30366004-30366023 | None:intergenic | 45.0% | |
| CGCAGCAAGGAATGCAATAA+TGG | - | chr7_4:30366011-30366030 | None:intergenic | 45.0% | |
| AAACACCGGACACATTCCAG+AGG | + | chr7_4:30364502-30364521 | Msa1149200:CDS | 50.0% | |
| GGCAAGTCTCTTGAAGGCTT+TGG | + | chr7_4:30364599-30364618 | Msa1149200:CDS | 50.0% | |
| ! | TCCACGACAGCTTTTCTTCG+AGG | - | chr7_4:30364628-30364647 | None:intergenic | 50.0% |
| TCGTGGATGTTGTTCGTGGA+TGG | + | chr7_4:30364641-30364660 | Msa1149200:CDS | 50.0% | |
| TGGAAAGACGAAGACGAGAG+TGG | + | chr7_4:30364806-30364825 | Msa1149200:CDS | 50.0% | |
| CATCATTGGGCCACACTAGA+TGG | + | chr7_4:30364863-30364882 | Msa1149200:CDS | 50.0% | |
| AGATGGGTCACAGCCAGATA+AGG | + | chr7_4:30364880-30364899 | Msa1149200:CDS | 50.0% | |
| GTCACAGCCAGATAAGGAGA+AGG | + | chr7_4:30364886-30364905 | Msa1149200:CDS | 50.0% | |
| GCCAGATAAGGAGAAGGACA+TGG | + | chr7_4:30364892-30364911 | Msa1149200:CDS | 50.0% | |
| AAGGGGAGGACAGTAATCAG+AGG | + | chr7_4:30365185-30365204 | Msa1149200:intron | 50.0% | |
| AGGGGAGGACAGTAATCAGA+GGG | + | chr7_4:30365186-30365205 | Msa1149200:intron | 50.0% | |
| GACTTAAGTCAAGCGCGACA+CGG | + | chr7_4:30365582-30365601 | Msa1149200:CDS | 50.0% | |
| GACTCTTCCTGAGATCGTTG+TGG | + | chr7_4:30365652-30365671 | Msa1149200:CDS | 50.0% | |
| TGACCGTCCTGAAGATGTGA+AGG | + | chr7_4:30365784-30365803 | Msa1149200:CDS | 50.0% | |
| CAATTCCCTTGGGAGTGATG+AGG | + | chr7_4:30365832-30365851 | Msa1149200:CDS | 50.0% | |
| AACGTCCTCATCACTCCCAA+GGG | - | chr7_4:30365840-30365859 | None:intergenic | 50.0% | |
| ! | AACATGGTTTGCGGTTGACC+CGG | + | chr7_4:30366060-30366079 | Msa1149200:CDS | 50.0% |
| AAACACCGGACACATTCCAG+AGG | + | chr7_4:30364502-30364521 | Msa1149200:CDS | 50.0% | |
| GGCAAGTCTCTTGAAGGCTT+TGG | + | chr7_4:30364599-30364618 | Msa1149200:CDS | 50.0% | |
| ! | TCCACGACAGCTTTTCTTCG+AGG | - | chr7_4:30364628-30364647 | None:intergenic | 50.0% |
| TCGTGGATGTTGTTCGTGGA+TGG | + | chr7_4:30364641-30364660 | Msa1149200:CDS | 50.0% | |
| TGGAAAGACGAAGACGAGAG+TGG | + | chr7_4:30364806-30364825 | Msa1149200:CDS | 50.0% | |
| CATCATTGGGCCACACTAGA+TGG | + | chr7_4:30364863-30364882 | Msa1149200:CDS | 50.0% | |
| AGATGGGTCACAGCCAGATA+AGG | + | chr7_4:30364880-30364899 | Msa1149200:CDS | 50.0% | |
| GTCACAGCCAGATAAGGAGA+AGG | + | chr7_4:30364886-30364905 | Msa1149200:CDS | 50.0% | |
| GCCAGATAAGGAGAAGGACA+TGG | + | chr7_4:30364892-30364911 | Msa1149200:CDS | 50.0% | |
| AAGGGGAGGACAGTAATCAG+AGG | + | chr7_4:30365185-30365204 | Msa1149200:intron | 50.0% | |
| AGGGGAGGACAGTAATCAGA+GGG | + | chr7_4:30365186-30365205 | Msa1149200:intron | 50.0% | |
| GACTTAAGTCAAGCGCGACA+CGG | + | chr7_4:30365582-30365601 | Msa1149200:CDS | 50.0% | |
| GACTCTTCCTGAGATCGTTG+TGG | + | chr7_4:30365652-30365671 | Msa1149200:CDS | 50.0% | |
| TGACCGTCCTGAAGATGTGA+AGG | + | chr7_4:30365784-30365803 | Msa1149200:CDS | 50.0% | |
| CAATTCCCTTGGGAGTGATG+AGG | + | chr7_4:30365832-30365851 | Msa1149200:CDS | 50.0% | |
| AACGTCCTCATCACTCCCAA+GGG | - | chr7_4:30365840-30365859 | None:intergenic | 50.0% | |
| ! | AACATGGTTTGCGGTTGACC+CGG | + | chr7_4:30366060-30366079 | Msa1149200:CDS | 50.0% |
| GCCTCGAAGAAAAGCTGTCG+TGG | + | chr7_4:30364624-30364643 | Msa1149200:CDS | 55.0% | |
| GCTGTCGTGGATGTTGTTCG+TGG | + | chr7_4:30364637-30364656 | Msa1149200:CDS | 55.0% | |
| CTGCCCTGGTTCATCAAGCT+TGG | - | chr7_4:30364696-30364715 | None:intergenic | 55.0% | |
| TGGCCCAATGATGACAGTCG+AGG | - | chr7_4:30364856-30364875 | None:intergenic | 55.0% | |
| TGGCTGTGACCCATCTAGTG+TGG | - | chr7_4:30364876-30364895 | None:intergenic | 55.0% | |
| GGGGAGGACAGTAATCAGAG+GGG | + | chr7_4:30365187-30365206 | Msa1149200:intron | 55.0% | |
| TTAAGTCAAGCGCGACACGG+AGG | + | chr7_4:30365585-30365604 | Msa1149200:CDS | 55.0% | |
| GTGTCGTCCACAACGATCTC+AGG | - | chr7_4:30365662-30365681 | None:intergenic | 55.0% | |
| CAACGTCCTCATCACTCCCA+AGG | - | chr7_4:30365841-30365860 | None:intergenic | 55.0% | |
| CAAGGGCGATAAACGCAGCA+AGG | - | chr7_4:30366024-30366043 | None:intergenic | 55.0% | |
| GCCTCGAAGAAAAGCTGTCG+TGG | + | chr7_4:30364624-30364643 | Msa1149200:CDS | 55.0% | |
| GCTGTCGTGGATGTTGTTCG+TGG | + | chr7_4:30364637-30364656 | Msa1149200:CDS | 55.0% | |
| CTGCCCTGGTTCATCAAGCT+TGG | - | chr7_4:30364696-30364715 | None:intergenic | 55.0% | |
| TGGCCCAATGATGACAGTCG+AGG | - | chr7_4:30364856-30364875 | None:intergenic | 55.0% | |
| TGGCTGTGACCCATCTAGTG+TGG | - | chr7_4:30364876-30364895 | None:intergenic | 55.0% | |
| GGGGAGGACAGTAATCAGAG+GGG | + | chr7_4:30365187-30365206 | Msa1149200:intron | 55.0% | |
| TTAAGTCAAGCGCGACACGG+AGG | + | chr7_4:30365585-30365604 | Msa1149200:CDS | 55.0% | |
| GTGTCGTCCACAACGATCTC+AGG | - | chr7_4:30365662-30365681 | None:intergenic | 55.0% | |
| CAACGTCCTCATCACTCCCA+AGG | - | chr7_4:30365841-30365860 | None:intergenic | 55.0% | |
| CAAGGGCGATAAACGCAGCA+AGG | - | chr7_4:30366024-30366043 | None:intergenic | 55.0% | |
| ! | TGCGGTTGACCCGGCTTGCT+AGG | + | chr7_4:30366069-30366088 | Msa1149200:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 30364177 | 30366090 | 30364177 | ID=Msa1149200;Name=Msa1149200 |
| chr7_4 | mRNA | 30364177 | 30366090 | 30364177 | ID=Msa1149200-mRNA-1;Parent=Msa1149200;Name=Msa1149200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=95|1|0.5|1|1|1|2|0|471 |
| chr7_4 | exon | 30364177 | 30365042 | 30364177 | ID=Msa1149200-mRNA-1:exon:7353;Parent=Msa1149200-mRNA-1 |
| chr7_4 | exon | 30365446 | 30366090 | 30365446 | ID=Msa1149200-mRNA-1:exon:7354;Parent=Msa1149200-mRNA-1 |
| chr7_4 | five_prime_UTR | 30364177 | 30364271 | 30364177 | ID=Msa1149200-mRNA-1:five_prime_utr;Parent=Msa1149200-mRNA-1 |
| chr7_4 | CDS | 30364272 | 30365042 | 30364272 | ID=Msa1149200-mRNA-1:cds;Parent=Msa1149200-mRNA-1 |
| chr7_4 | CDS | 30365446 | 30366090 | 30365446 | ID=Msa1149200-mRNA-1:cds;Parent=Msa1149200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
