Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150470 | KAG4400838.1 | 83.019 | 53 | 9 | 0 | 1 | 53 | 1 | 53 | 7.43e-24 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150470 | A0A444ZNE2 | 83.019 | 53 | 9 | 0 | 1 | 53 | 1 | 53 | 9.32e-24 | 94.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0233610 | Msa1150470 | 0.800490 | 1.406232e-48 | -8.615850e-47 |
| Msa1118930 | Msa1150470 | 0.801098 | 1.056736e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150470 | MtrunA17_Chr7g0240051 | 90.566 | 53 | 5 | 0 | 1 | 53 | 1 | 53 | 4.16e-20 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTGGATGGGGTGATTT+TGG | 0.190092 | 7_4:-33912088 | Msa1150470:CDS |
| TTCTCACTATGTGCTGATCT+TGG | 0.303017 | 7_4:-33912178 | Msa1150470:CDS |
| TCTCACTATGTGCTGATCTT+GGG | 0.325004 | 7_4:-33912177 | Msa1150470:CDS |
| GTGATGGAGGAGGAGGTGGA+TGG | 0.366889 | 7_4:-33912099 | Msa1150470:CDS |
| CTTGAGTTGGCTACAAGCTT+TGG | 0.372495 | 7_4:-33916037 | Msa1150470:CDS |
| GGTGGTGATGGAGGAGGAGG+TGG | 0.377311 | 7_4:-33912103 | Msa1150470:CDS |
| ATCACCATCTTGTCGTGGTT+TGG | 0.379746 | 7_4:+33915960 | None:intergenic |
| TGATGGAGGAGGAGGTGGAT+GGG | 0.381274 | 7_4:-33912098 | Msa1150470:CDS |
| GATGGAGGAGGAGGTGGATG+GGG | 0.387892 | 7_4:-33912097 | Msa1150470:CDS |
| TGTGCTGATCTTGGGGAAGC+TGG | 0.426168 | 7_4:-33912169 | Msa1150470:CDS |
| GATCTTGGGGAAGCTGGATC+AGG | 0.426921 | 7_4:-33912163 | Msa1150470:CDS |
| GATGGTGGTGATGGAGGAGG+AGG | 0.434887 | 7_4:-33912106 | Msa1150470:CDS |
| GAATGGAGAATTACTTGAGT+TGG | 0.458510 | 7_4:-33916050 | Msa1150470:CDS |
| TCAGGAGGCCATGGTGGAGA+TGG | 0.458690 | 7_4:-33912145 | Msa1150470:CDS |
| GGCCATGGTGATGGTGGTGA+TGG | 0.473057 | 7_4:-33912115 | Msa1150470:CDS |
| ACTTGCGACGGCGGCAGCCA+TGG | 0.480272 | 7_4:-33915913 | Msa1150470:intron |
| AGCATGGGGATTCATGTTGT+TGG | 0.482154 | 7_4:-33916010 | Msa1150470:CDS |
| CTCACTATGTGCTGATCTTG+GGG | 0.483051 | 7_4:-33912176 | Msa1150470:CDS |
| GAAGCTGGATCAGGAGGCCA+TGG | 0.484084 | 7_4:-33912154 | Msa1150470:CDS |
| CATGGTGGAGATGGAGGAGG+AGG | 0.488363 | 7_4:-33912136 | Msa1150470:CDS |
| ACAAGCTTTGGCTACAGCAT+GGG | 0.498469 | 7_4:-33916025 | Msa1150470:CDS |
| GGAGATGGAGGAGGAGGCCA+TGG | 0.505344 | 7_4:-33912130 | Msa1150470:CDS |
| CTCCTCCTCCATCTCCACCA+TGG | 0.509471 | 7_4:+33912137 | None:intergenic |
| GGTGATGGTGGTGATGGAGG+AGG | 0.513785 | 7_4:-33912109 | Msa1150470:CDS |
| TACAAGCTTTGGCTACAGCA+TGG | 0.522163 | 7_4:-33916026 | Msa1150470:CDS |
| CATGGTGATGGTGGTGATGG+AGG | 0.537033 | 7_4:-33912112 | Msa1150470:CDS |
| ATGGGGATTCATGTTGTTGG+TGG | 0.541523 | 7_4:-33916007 | Msa1150470:CDS |
| CAAGATGGTGATGATATCTC+TGG | 0.542874 | 7_4:-33915949 | Msa1150470:CDS |
| GGAGGCCATGGTGGAGATGG+AGG | 0.550378 | 7_4:-33912142 | Msa1150470:CDS |
| GGAGGAGGAGGCCATGGTGA+TGG | 0.551785 | 7_4:-33912124 | Msa1150470:CDS |
| GGTGGTTGCACTTGCGACGG+CGG | 0.556572 | 7_4:-33915922 | Msa1150470:CDS |
| GGCCATGGTGGAGATGGAGG+AGG | 0.561808 | 7_4:-33912139 | Msa1150470:CDS |
| CAAGCTTTGGCTACAGCATG+GGG | 0.575177 | 7_4:-33916024 | Msa1150470:CDS |
| GGAGGAGGCCATGGTGATGG+TGG | 0.575590 | 7_4:-33912121 | Msa1150470:CDS |
| CTTGGGGAAGCTGGATCAGG+AGG | 0.587772 | 7_4:-33912160 | Msa1150470:CDS |
| AGCACCAAACCACGACAAGA+TGG | 0.593032 | 7_4:-33915964 | Msa1150470:CDS |
| GATGATATCTCTGGCAATGG+TGG | 0.599639 | 7_4:-33915940 | Msa1150470:CDS |
| GCTGGATCAGGAGGCCATGG+TGG | 0.621004 | 7_4:-33912151 | Msa1150470:CDS |
| CTCCATCACCACCATCACCA+TGG | 0.635220 | 7_4:+33912113 | None:intergenic |
| ATATCATCACCATCTTGTCG+TGG | 0.648285 | 7_4:+33915955 | None:intergenic |
| AATGGTGGTTGCACTTGCGA+CGG | 0.653493 | 7_4:-33915925 | Msa1150470:CDS |
| GGTGATGATATCTCTGGCAA+TGG | 0.664252 | 7_4:-33915943 | Msa1150470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAATAAATTAACATAT+AGG | + | chr7_4:33912982-33913001 | None:intergenic | 10.0% |
| !!! | TATGTTAATTTATTGTTTTT+TGG | - | chr7_4:33912983-33913002 | Msa1150470:intron | 10.0% |
| !! | ATAAAAATAATTAAGAAGAT+TGG | - | chr7_4:33915036-33915055 | Msa1150470:intron | 10.0% |
| !! | TAAAAAAATAATATGTACTT+AGG | - | chr7_4:33915224-33915243 | Msa1150470:intron | 10.0% |
| !! | AAAAAAATAATATGTACTTA+GGG | - | chr7_4:33915225-33915244 | Msa1150470:intron | 10.0% |
| !! | CTTTAAATTAAATTAATCTA+CGG | - | chr7_4:33915611-33915630 | Msa1150470:intron | 10.0% |
| !! | TTTAAATTAAATTAATCTAC+GGG | - | chr7_4:33915612-33915631 | Msa1150470:intron | 10.0% |
| !!! | TCAAATTAAACAATTTTAAT+AGG | + | chr7_4:33915646-33915665 | None:intergenic | 10.0% |
| !! | AAATATGTTTATATGATCAT+GGG | - | chr7_4:33912383-33912402 | Msa1150470:intron | 15.0% |
| !! | ATATTAAGTAGAAATGTTTA+AGG | + | chr7_4:33912647-33912666 | None:intergenic | 15.0% |
| !!! | TTTCTACTTAATATTTTTTG+TGG | - | chr7_4:33912653-33912672 | Msa1150470:intron | 15.0% |
| !! | AATAAAAGGAAAAAACAAAA+TGG | + | chr7_4:33912953-33912972 | None:intergenic | 15.0% |
| !! | TTAATAAATTATTTCCAGTT+AGG | + | chr7_4:33913048-33913067 | None:intergenic | 15.0% |
| !! | AAAACTAAAAAACAAGTATT+TGG | - | chr7_4:33913450-33913469 | Msa1150470:intron | 15.0% |
| !! | AAACTAAAAAACAAGTATTT+GGG | - | chr7_4:33913451-33913470 | Msa1150470:intron | 15.0% |
| !!! | CAAAACTTTTTTTTTAAACA+TGG | + | chr7_4:33914310-33914329 | None:intergenic | 15.0% |
| !! | GAATTTAATTCATTCAATAT+TGG | + | chr7_4:33914680-33914699 | None:intergenic | 15.0% |
| !!! | AAAGAAATTTGCAATTTTTT+GGG | + | chr7_4:33914786-33914805 | None:intergenic | 15.0% |
| !!! | AAAAGAAATTTGCAATTTTT+TGG | + | chr7_4:33914787-33914806 | None:intergenic | 15.0% |
| !!! | AATATACACATTATTTTGAT+AGG | - | chr7_4:33915351-33915370 | Msa1150470:intron | 15.0% |
| !!! | ATATACACATTATTTTGATA+GGG | - | chr7_4:33915352-33915371 | Msa1150470:intron | 15.0% |
| !! | TATATAGGTGATTAATATAT+GGG | + | chr7_4:33915703-33915722 | None:intergenic | 15.0% |
| !! | ATATATAGGTGATTAATATA+TGG | + | chr7_4:33915704-33915723 | None:intergenic | 15.0% |
| !!! | ATAAGCTATTTTTTTGTGTT+AGG | - | chr7_4:33912262-33912281 | Msa1150470:intron | 20.0% |
| !! | CAAATATGTTTATATGATCA+TGG | - | chr7_4:33912382-33912401 | Msa1150470:intron | 20.0% |
| !!! | TAATTTAGTGGATAAATAGA+GGG | - | chr7_4:33912426-33912445 | Msa1150470:intron | 20.0% |
| !! | CATATAGGAAGAAAAATAAA+AGG | + | chr7_4:33912967-33912986 | None:intergenic | 20.0% |
| !! | TTAAACTTTCATAATAGGTT+GGG | + | chr7_4:33913275-33913294 | None:intergenic | 20.0% |
| !! | TTTAAACTTTCATAATAGGT+TGG | + | chr7_4:33913276-33913295 | None:intergenic | 20.0% |
| !!! | TGGTTTTAAACTTTCATAAT+AGG | + | chr7_4:33913280-33913299 | None:intergenic | 20.0% |
| !! | AAACAAAATCATATTGATGT+TGG | + | chr7_4:33913300-33913319 | None:intergenic | 20.0% |
| !!! | TTTTGAAAATCAATATATCG+CGG | + | chr7_4:33913510-33913529 | None:intergenic | 20.0% |
| !!! | TTTGTCTCAATTTTTAGATT+CGG | - | chr7_4:33913665-33913684 | Msa1150470:intron | 20.0% |
| !!! | GAATTTCATGTAGTTTTTTT+TGG | - | chr7_4:33914528-33914547 | Msa1150470:intron | 20.0% |
| !! | TGAAACTATAAACACATTAA+GGG | + | chr7_4:33915163-33915182 | None:intergenic | 20.0% |
| !! | TTGAAACTATAAACACATTA+AGG | + | chr7_4:33915164-33915183 | None:intergenic | 20.0% |
| !! | GAGAAATTTACCATATATTA+TGG | - | chr7_4:33915247-33915266 | Msa1150470:intron | 20.0% |
| !! | TTTGATAAGACCATAATATA+TGG | + | chr7_4:33915260-33915279 | None:intergenic | 20.0% |
| !!! | TATACACATTATTTTGATAG+GGG | - | chr7_4:33915353-33915372 | Msa1150470:intron | 20.0% |
| !!! | ATTCTTTCAATTTTTTGACT+TGG | + | chr7_4:33915449-33915468 | None:intergenic | 20.0% |
| !!! | GTGTTTCTATTTAAAGTAAA+TGG | + | chr7_4:33915510-33915529 | None:intergenic | 20.0% |
| !!! | ATGACTATTTCTTTTTTTGA+GGG | + | chr7_4:33915588-33915607 | None:intergenic | 20.0% |
| !!! | AATGACTATTTCTTTTTTTG+AGG | + | chr7_4:33915589-33915608 | None:intergenic | 20.0% |
| !!! | TAAACAATTTTAATAGGAGA+AGG | + | chr7_4:33915640-33915659 | None:intergenic | 20.0% |
| !!! | TAGAAGAAAGAGTTTTTATT+TGG | - | chr7_4:33915905-33915924 | Msa1150470:intron | 20.0% |
| ! | TTTGTGTTAGGTAATTCAAT+AGG | - | chr7_4:33912274-33912293 | Msa1150470:intron | 25.0% |
| !! | CTGATGATTTTGTAATTTAG+TGG | - | chr7_4:33912414-33912433 | Msa1150470:intron | 25.0% |
| !! | GTAATTTAGTGGATAAATAG+AGG | - | chr7_4:33912425-33912444 | Msa1150470:intron | 25.0% |
| !!! | CTTTGGAGTCATAAAAATTT+GGG | - | chr7_4:33912570-33912589 | Msa1150470:intron | 25.0% |
| !! | TTTGGAGTCATAAAAATTTG+GGG | - | chr7_4:33912571-33912590 | Msa1150470:intron | 25.0% |
| !!! | TACTTAATATTTTTTGTGGC+TGG | - | chr7_4:33912657-33912676 | Msa1150470:intron | 25.0% |
| !!! | ACTTAATATTTTTTGTGGCT+GGG | - | chr7_4:33912658-33912677 | Msa1150470:intron | 25.0% |
| ! | ATTAATCTAACAATCATGGT+CGG | + | chr7_4:33912731-33912750 | None:intergenic | 25.0% |
| ! | CTCTATTAATCTAACAATCA+TGG | + | chr7_4:33912735-33912754 | None:intergenic | 25.0% |
| ! | AATAAATGAATCCCACTAAT+TGG | - | chr7_4:33912852-33912871 | Msa1150470:intron | 25.0% |
| ! | AACTAATATGACCAATTAGT+GGG | + | chr7_4:33912866-33912885 | None:intergenic | 25.0% |
| ! | AAACTAATATGACCAATTAG+TGG | + | chr7_4:33912867-33912886 | None:intergenic | 25.0% |
| !!! | TTTATCATTAGTCGGTTTTA+TGG | + | chr7_4:33912930-33912949 | None:intergenic | 25.0% |
| ! | CAAAATGGTTTATCATTAGT+CGG | + | chr7_4:33912938-33912957 | None:intergenic | 25.0% |
| !! | TCTAAAATTTGTCTTCTATG+AGG | + | chr7_4:33913416-33913435 | None:intergenic | 25.0% |
| !! | TAACATGGTCTTTCATTTTA+AGG | - | chr7_4:33913635-33913654 | Msa1150470:intron | 25.0% |
| !! | AACGTTTTTATAGGTCTTTA+TGG | - | chr7_4:33913729-33913748 | Msa1150470:intron | 25.0% |
| !! | GTTTTTGTAACAAGCTAAAA+TGG | + | chr7_4:33913887-33913906 | None:intergenic | 25.0% |
| !! | AAGATACTCACTTCAATTTT+TGG | + | chr7_4:33913922-33913941 | None:intergenic | 25.0% |
| ! | ACGTAATTTACAATGACATT+TGG | - | chr7_4:33914134-33914153 | Msa1150470:intron | 25.0% |
| ! | ACTTGTTTGAATAGAACAAA+AGG | + | chr7_4:33914176-33914195 | None:intergenic | 25.0% |
| !!! | TTTCATGTAGTTTTTTTTGG+TGG | - | chr7_4:33914531-33914550 | Msa1150470:intron | 25.0% |
| ! | GTATTTCGGATATTAATTAG+TGG | + | chr7_4:33914750-33914769 | None:intergenic | 25.0% |
| !! | GCAAATTTCTTTTTATACAC+TGG | - | chr7_4:33914794-33914813 | Msa1150470:intron | 25.0% |
| !!! | TTTGTTGTTACAATAGCATA+TGG | - | chr7_4:33914981-33915000 | Msa1150470:intron | 25.0% |
| ! | CACTCTTATATTAAAACAAC+AGG | - | chr7_4:33915114-33915133 | Msa1150470:intron | 25.0% |
| !!! | GAAACTTTTTTATGTGAACT+GGG | + | chr7_4:33915321-33915340 | None:intergenic | 25.0% |
| !!! | TGAAACTTTTTTATGTGAAC+TGG | + | chr7_4:33915322-33915341 | None:intergenic | 25.0% |
| !!! | ATACACATTATTTTGATAGG+GGG | - | chr7_4:33915354-33915373 | Msa1150470:intron | 25.0% |
| ! | AAGATAATTAAGACTTGAAG+AGG | + | chr7_4:33915384-33915403 | None:intergenic | 25.0% |
| ! | ACATTAAAATACTTGTGACT+TGG | + | chr7_4:33915539-33915558 | None:intergenic | 25.0% |
| ! | ATCACCTATATATTTACCAA+AGG | - | chr7_4:33915711-33915730 | Msa1150470:intron | 25.0% |
| !! | ATTTTATGAAATCAAGAGCA+TGG | + | chr7_4:33915737-33915756 | None:intergenic | 25.0% |
| AAAAACATCATACACAACCA+TGG | + | chr7_4:33912230-33912249 | None:intergenic | 30.0% | |
| TGTTAGGTAATTCAATAGGT+TGG | - | chr7_4:33912278-33912297 | Msa1150470:intron | 30.0% | |
| GTTAGGTAATTCAATAGGTT+GGG | - | chr7_4:33912279-33912298 | Msa1150470:intron | 30.0% | |
| TTAGGTAATTCAATAGGTTG+GGG | - | chr7_4:33912280-33912299 | Msa1150470:intron | 30.0% | |
| TATGTTTATATGATCATGGG+AGG | - | chr7_4:33912386-33912405 | Msa1150470:intron | 30.0% | |
| ATGTTTATATGATCATGGGA+GGG | - | chr7_4:33912387-33912406 | Msa1150470:intron | 30.0% | |
| !! | GCTTTGGAGTCATAAAAATT+TGG | - | chr7_4:33912569-33912588 | Msa1150470:intron | 30.0% |
| CTATCTATCTTCGAAATGAA+TGG | + | chr7_4:33912801-33912820 | None:intergenic | 30.0% | |
| TCTTAGTTTCTTTCTCAAAG+AGG | - | chr7_4:33912890-33912909 | Msa1150470:intron | 30.0% | |
| GACAGCTTCTTAACATATAT+AGG | + | chr7_4:33913015-33913034 | None:intergenic | 30.0% | |
| ! | CACATAATACCTTTTCAATG+AGG | - | chr7_4:33913186-33913205 | Msa1150470:intron | 30.0% |
| ! | TAGAGTTAGTTTACTTGTGT+TGG | - | chr7_4:33913591-33913610 | Msa1150470:intron | 30.0% |
| ! | AGAGTTAGTTTACTTGTGTT+GGG | - | chr7_4:33913592-33913611 | Msa1150470:intron | 30.0% |
| ! | TTAAACACGTGTCTTTTTGA+TGG | - | chr7_4:33913688-33913707 | Msa1150470:intron | 30.0% |
| ! | AGGACTGTTAACGTTTTTAT+AGG | - | chr7_4:33913720-33913739 | Msa1150470:intron | 30.0% |
| ! | TTTTTATAGGTCTTTATGGC+TGG | - | chr7_4:33913733-33913752 | Msa1150470:intron | 30.0% |
| TTGAAGTGAGTATCTTCAAT+TGG | - | chr7_4:33913926-33913945 | Msa1150470:intron | 30.0% | |
| TTCAGAGTTTATGATGAGAA+CGG | - | chr7_4:33914007-33914026 | Msa1150470:intron | 30.0% | |
| ATTATACATCTTAGCCATGT+AGG | + | chr7_4:33914034-33914053 | None:intergenic | 30.0% | |
| ! | TTTTACATGCAACACATTTG+AGG | - | chr7_4:33914053-33914072 | Msa1150470:intron | 30.0% |
| ! | ATTGTAAATTGCTTGTTGCA+TGG | + | chr7_4:33914100-33914119 | None:intergenic | 30.0% |
| ACAAGCAATTTACAATGACA+AGG | - | chr7_4:33914104-33914123 | Msa1150470:intron | 30.0% | |
| TGGCACTACTACTAAAAATT+CGG | + | chr7_4:33914871-33914890 | None:intergenic | 30.0% | |
| AAAAAATTCCCTGCAACTAA+GGG | + | chr7_4:33914960-33914979 | None:intergenic | 30.0% | |
| AAAAAAATTCCCTGCAACTA+AGG | + | chr7_4:33914961-33914980 | None:intergenic | 30.0% | |
| ! | ATTAAAACAACAGGTGCTTT+TGG | - | chr7_4:33915123-33915142 | Msa1150470:intron | 30.0% |
| TAATTTGATCAAGCCTTACA+CGG | - | chr7_4:33915658-33915677 | Msa1150470:intron | 30.0% | |
| ATGGCCTTTGGTAAATATAT+AGG | + | chr7_4:33915718-33915737 | None:intergenic | 30.0% | |
| TACATAGAGAATTCAGAAAG+AGG | - | chr7_4:33915770-33915789 | Msa1150470:intron | 30.0% | |
| AATTCAGAAAGAGGTTGTTA+TGG | - | chr7_4:33915779-33915798 | Msa1150470:intron | 30.0% | |
| ATTCAGAAAGAGGTTGTTAT+GGG | - | chr7_4:33915780-33915799 | Msa1150470:intron | 30.0% | |
| AATGTCTCTCAAAGCTATAA+AGG | - | chr7_4:33915852-33915871 | Msa1150470:intron | 30.0% | |
| !! | TTAGTTTGGTTTGAATCTTG+AGG | + | chr7_4:33915879-33915898 | None:intergenic | 30.0% |
| TTCTTCTATTCAGCTTAGTT+TGG | + | chr7_4:33915893-33915912 | None:intergenic | 30.0% | |
| AAAATGCATGTCTTGAAGCA+AGG | + | chr7_4:33912520-33912539 | None:intergenic | 35.0% | |
| GTAAGAGGTCTAATTCTTGA+AGG | + | chr7_4:33912547-33912566 | None:intergenic | 35.0% | |
| ATTAGACCTCTTACATGCTT+TGG | - | chr7_4:33912553-33912572 | Msa1150470:intron | 35.0% | |
| TGTCATGAATTTAGCCTAAC+TGG | - | chr7_4:33913031-33913050 | Msa1150470:intron | 35.0% | |
| !! | TCAAAAGTGTCAAGCAAAGA+TGG | + | chr7_4:33913085-33913104 | None:intergenic | 35.0% |
| CAACATTCTCCTCATTGAAA+AGG | + | chr7_4:33913198-33913217 | None:intergenic | 35.0% | |
| ! | CTTTTCAATGAGGAGAATGT+TGG | - | chr7_4:33913196-33913215 | Msa1150470:intron | 35.0% |
| GGTTGAATGATAGATAGGAA+AGG | + | chr7_4:33913254-33913273 | None:intergenic | 35.0% | |
| TTTGTCTTCTATGAGGTACA+AGG | + | chr7_4:33913409-33913428 | None:intergenic | 35.0% | |
| GATACGACTTAAGCATAAGA+CGG | + | chr7_4:33913477-33913496 | None:intergenic | 35.0% | |
| !! | TTGCTTGTCTTTGATTTGCA+AGG | - | chr7_4:33913553-33913572 | Msa1150470:intron | 35.0% |
| ! | AAATTGCTTGTTGCATGGTA+GGG | + | chr7_4:33914095-33914114 | None:intergenic | 35.0% |
| ! | TAAATTGCTTGTTGCATGGT+AGG | + | chr7_4:33914096-33914115 | None:intergenic | 35.0% |
| ACAATGACATTTGGCATTTG+CGG | - | chr7_4:33914143-33914162 | Msa1150470:intron | 35.0% | |
| ACATGAAATTCCCAACTAGA+GGG | + | chr7_4:33914519-33914538 | None:intergenic | 35.0% | |
| TACATGAAATTCCCAACTAG+AGG | + | chr7_4:33914520-33914539 | None:intergenic | 35.0% | |
| !!! | CATGTAGTTTTTTTTGGTGG+TGG | - | chr7_4:33914534-33914553 | Msa1150470:intron | 35.0% |
| GACAATGCATAGAATATGCA+AGG | + | chr7_4:33914579-33914598 | None:intergenic | 35.0% | |
| GATCACACATTCACGTATTT+CGG | + | chr7_4:33914764-33914783 | None:intergenic | 35.0% | |
| ! | AAAATTCGGGTTATAGACGA+AGG | + | chr7_4:33914857-33914876 | None:intergenic | 35.0% |
| GGCACTACTACTAAAAATTC+GGG | + | chr7_4:33914870-33914889 | None:intergenic | 35.0% | |
| GATCACACATTCACATATTC+AGG | + | chr7_4:33914938-33914957 | None:intergenic | 35.0% | |
| AACAATTCTTTGTCCGTGTA+AGG | + | chr7_4:33915674-33915693 | None:intergenic | 35.0% | |
| !!! | GTTATGGGTTGTTTTTGCTT+TGG | - | chr7_4:33915795-33915814 | Msa1150470:intron | 35.0% |
| TATTTGGTAAGTTGCTGTGA+AGG | - | chr7_4:33915921-33915940 | Msa1150470:CDS | 35.0% | |
| ATATCATCACCATCTTGTCG+TGG | + | chr7_4:33912171-33912190 | None:intergenic | 40.0% | |
| ! | CAAGATGGTGATGATATCTC+TGG | - | chr7_4:33912174-33912193 | Msa1150470:CDS | 40.0% |
| GAGGTCTAATTCTTGAAGGA+AGG | + | chr7_4:33912543-33912562 | None:intergenic | 40.0% | |
| ATGACTCCAAAGCATGTAAG+AGG | + | chr7_4:33912562-33912581 | None:intergenic | 40.0% | |
| GCACAAAGCTTCGAAATTTG+AGG | + | chr7_4:33912685-33912704 | None:intergenic | 40.0% | |
| TGTGCAATAACCCTTACACT+TGG | - | chr7_4:33912700-33912719 | Msa1150470:intron | 40.0% | |
| GTGCAATAACCCTTACACTT+GGG | - | chr7_4:33912701-33912720 | Msa1150470:intron | 40.0% | |
| CTTACCTAATTACGCAACCA+CGG | + | chr7_4:33913142-33913161 | None:intergenic | 40.0% | |
| !! | GGTTGGGTTGAATGATAGAT+AGG | + | chr7_4:33913259-33913278 | None:intergenic | 40.0% |
| TTACTTGTGTTGGGATCATC+TGG | - | chr7_4:33913601-33913620 | Msa1150470:intron | 40.0% | |
| TACTTGTGTTGGGATCATCT+GGG | - | chr7_4:33913602-33913621 | Msa1150470:intron | 40.0% | |
| CTGGGAGGAAAGAAATAACA+TGG | - | chr7_4:33913620-33913639 | Msa1150470:intron | 40.0% | |
| ACGTTAACAGTCCTTGTCTT+CGG | + | chr7_4:33913714-33913733 | None:intergenic | 40.0% | |
| TTTAACCAACGCATGTCGAA+AGG | + | chr7_4:33913768-33913787 | None:intergenic | 40.0% | |
| ATTGGTACACGTTCTTAGTG+AGG | - | chr7_4:33913944-33913963 | Msa1150470:intron | 40.0% | |
| TTGGTACACGTTCTTAGTGA+GGG | - | chr7_4:33913945-33913964 | Msa1150470:intron | 40.0% | |
| CATGAAATTCCCAACTAGAG+GGG | + | chr7_4:33914518-33914537 | None:intergenic | 40.0% | |
| !!! | TAGTTTTTTTTGGTGGTGGC+CGG | - | chr7_4:33914538-33914557 | Msa1150470:intron | 40.0% |
| TGCATAGAATATGCAAGGTC+CGG | + | chr7_4:33914574-33914593 | None:intergenic | 40.0% | |
| AGCTCACTATCTCTATGCTT+TGG | - | chr7_4:33914701-33914720 | Msa1150470:intron | 40.0% | |
| AAAGAGCTCTCTGCTTGATT+TGG | + | chr7_4:33914891-33914910 | None:intergenic | 40.0% | |
| !! | GTGCTTTTGGTTACTACAGA+GGG | - | chr7_4:33915136-33915155 | Msa1150470:intron | 40.0% |
| TTAGTTTATGCCGTTGCATG+CGG | - | chr7_4:33915289-33915308 | Msa1150470:intron | 40.0% | |
| ! | TTCTCACTATGTGCTGATCT+TGG | - | chr7_4:33915945-33915964 | Msa1150470:CDS | 40.0% |
| ! | TCTCACTATGTGCTGATCTT+GGG | - | chr7_4:33915946-33915965 | Msa1150470:CDS | 40.0% |
| !! | CTTGAGTTGGCTACAAGCTT+TGG | - | chr7_4:33912086-33912105 | Msa1150470:CDS | 45.0% |
| ! | TACAAGCTTTGGCTACAGCA+TGG | - | chr7_4:33912097-33912116 | Msa1150470:CDS | 45.0% |
| ! | ACAAGCTTTGGCTACAGCAT+GGG | - | chr7_4:33912098-33912117 | Msa1150470:CDS | 45.0% |
| AGCATGGGGATTCATGTTGT+TGG | - | chr7_4:33912113-33912132 | Msa1150470:CDS | 45.0% | |
| ATGGGGATTCATGTTGTTGG+TGG | - | chr7_4:33912116-33912135 | Msa1150470:CDS | 45.0% | |
| ATCACCATCTTGTCGTGGTT+TGG | + | chr7_4:33912166-33912185 | None:intergenic | 45.0% | |
| GGTGATGATATCTCTGGCAA+TGG | - | chr7_4:33912180-33912199 | Msa1150470:CDS | 45.0% | |
| GATGATATCTCTGGCAATGG+TGG | - | chr7_4:33912183-33912202 | Msa1150470:CDS | 45.0% | |
| CTTTCTCAAAGAGGTCGAGA+CGG | - | chr7_4:33912899-33912918 | Msa1150470:intron | 45.0% | |
| ! | GGAGAATGTTGGCTAGACTT+AGG | - | chr7_4:33913207-33913226 | Msa1150470:intron | 45.0% |
| TGGCTAGACTTAGGTAGCTT+CGG | - | chr7_4:33913216-33913235 | Msa1150470:intron | 45.0% | |
| TAGACTTAGGTAGCTTCGGA+GGG | - | chr7_4:33913220-33913239 | Msa1150470:intron | 45.0% | |
| !! | CTTTTTGATGGCCGAAGACA+AGG | - | chr7_4:33913700-33913719 | Msa1150470:intron | 45.0% |
| TGGTACACGTTCTTAGTGAG+GGG | - | chr7_4:33913946-33913965 | Msa1150470:intron | 45.0% | |
| CTTAGTGAGGGGCAATGAAA+AGG | - | chr7_4:33913957-33913976 | Msa1150470:intron | 45.0% | |
| ATGATGAGAACGGACCTACA+TGG | - | chr7_4:33914017-33914036 | Msa1150470:intron | 45.0% | |
| !!! | AGTTTTTTTTGGTGGTGGCC+GGG | - | chr7_4:33914539-33914558 | Msa1150470:intron | 45.0% |
| CATAGAATATGCAAGGTCCG+GGG | + | chr7_4:33914572-33914591 | None:intergenic | 45.0% | |
| GCATAGAATATGCAAGGTCC+GGG | + | chr7_4:33914573-33914592 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | + | chr7_4:33914601-33914620 | None:intergenic | 45.0% |
| TCAAGCAGAGAGCTCTTTCA+AGG | - | chr7_4:33914893-33914912 | Msa1150470:intron | 45.0% | |
| ATGTGTGATCCCTTAGTTGC+AGG | - | chr7_4:33914948-33914967 | Msa1150470:intron | 45.0% | |
| TGTGTGATCCCTTAGTTGCA+GGG | - | chr7_4:33914949-33914968 | Msa1150470:intron | 45.0% | |
| !! | GGTGCTTTTGGTTACTACAG+AGG | - | chr7_4:33915135-33915154 | Msa1150470:intron | 45.0% |
| ! | GAAATCAAGAGCATGGCCTT+TGG | + | chr7_4:33915730-33915749 | None:intergenic | 45.0% |
| ! | CTCACTATGTGCTGATCTTG+GGG | - | chr7_4:33915947-33915966 | Msa1150470:CDS | 45.0% |
| !! | ATAATTTATTAAATTTGTAT+AGG | - | chr7_4:33913056-33913075 | Msa1150470:intron | 5.0% |
| ! | CAAGCTTTGGCTACAGCATG+GGG | - | chr7_4:33912099-33912118 | Msa1150470:CDS | 50.0% |
| AGCACCAAACCACGACAAGA+TGG | - | chr7_4:33912159-33912178 | Msa1150470:CDS | 50.0% | |
| AATGGTGGTTGCACTTGCGA+CGG | - | chr7_4:33912198-33912217 | Msa1150470:intron | 50.0% | |
| GTCGGCTAACCCAAGTGTAA+GGG | + | chr7_4:33912713-33912732 | None:intergenic | 50.0% | |
| CTAGACTTAGGTAGCTTCGG+AGG | - | chr7_4:33913219-33913238 | Msa1150470:intron | 50.0% | |
| TTGTGTTGGGATCATCTGGG+AGG | - | chr7_4:33913605-33913624 | Msa1150470:intron | 50.0% | |
| AACGTCCTTTCGACATGCGT+TGG | - | chr7_4:33913760-33913779 | Msa1150470:intron | 50.0% | |
| ! | TGCTTGTTGCATGGTAGGGT+TGG | + | chr7_4:33914091-33914110 | None:intergenic | 50.0% |
| ! | TTAACCGACTCCCCTCTAGT+TGG | - | chr7_4:33914505-33914524 | Msa1150470:intron | 50.0% |
| ! | TAACCGACTCCCCTCTAGTT+GGG | - | chr7_4:33914506-33914525 | Msa1150470:intron | 50.0% |
| ATTCCCAACTAGAGGGGAGT+CGG | + | chr7_4:33914512-33914531 | None:intergenic | 50.0% | |
| !! | AGACGAAGGTGTTGGTCCAT+CGG | + | chr7_4:33914843-33914862 | None:intergenic | 50.0% |
| ! | CGGGTTATAGACGAAGGTGT+TGG | + | chr7_4:33914851-33914870 | None:intergenic | 50.0% |
| TGGGTATCTTCCGCATGCAA+CGG | + | chr7_4:33915302-33915321 | None:intergenic | 50.0% | |
| GGTCGGCTAACCCAAGTGTA+AGG | + | chr7_4:33912714-33912733 | None:intergenic | 55.0% | |
| TCTTTGTCATCTGCCAGCCG+TGG | - | chr7_4:33913122-33913141 | Msa1150470:intron | 55.0% | |
| CCTAATTACGCAACCACGGC+TGG | + | chr7_4:33913138-33913157 | None:intergenic | 55.0% | |
| CCAGCCGTGGTTGCGTAATT+AGG | - | chr7_4:33913135-33913154 | Msa1150470:intron | 55.0% | |
| AAGGTCCGGGGTTCAAATCC+CGG | + | chr7_4:33914560-33914579 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr7_4:33914606-33914625 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr7_4:33914603-33914622 | Msa1150470:intron | 55.0% | |
| GGCGCAAATGATTGCCCCTA+AGG | - | chr7_4:33914815-33914834 | Msa1150470:intron | 55.0% | |
| ! | TTGGTCCATCGGTGCCTTAG+GGG | + | chr7_4:33914832-33914851 | None:intergenic | 55.0% |
| ! | GTTGGTCCATCGGTGCCTTA+GGG | + | chr7_4:33914833-33914852 | None:intergenic | 55.0% |
| ! | TGTTGGTCCATCGGTGCCTT+AGG | + | chr7_4:33914834-33914853 | None:intergenic | 55.0% |
| ! | TGTGCTGATCTTGGGGAAGC+TGG | - | chr7_4:33915954-33915973 | Msa1150470:CDS | 55.0% |
| GATCTTGGGGAAGCTGGATC+AGG | - | chr7_4:33915960-33915979 | Msa1150470:CDS | 55.0% | |
| CTCCATCACCACCATCACCA+TGG | + | chr7_4:33916013-33916032 | None:intergenic | 55.0% | |
| !! | CATGGTGATGGTGGTGATGG+AGG | - | chr7_4:33916011-33916030 | Msa1150470:CDS | 55.0% |
| TGATGGAGGAGGAGGTGGAT+GGG | - | chr7_4:33916025-33916044 | Msa1150470:CDS | 55.0% | |
| ! | GGAGGTGGATGGGGTGATTT+TGG | - | chr7_4:33916035-33916054 | Msa1150470:CDS | 55.0% |
| ! | GGTGGATGGGGTGATTTTGG+TGG | - | chr7_4:33916038-33916057 | Msa1150470:CDS | 55.0% |
| !! | GGATGGGGTGATTTTGGTGG+AGG | - | chr7_4:33916041-33916060 | Msa1150470:CDS | 55.0% |
| !! | GATTGCCCCTAAGGCACCGA+TGG | - | chr7_4:33914824-33914843 | Msa1150470:intron | 60.0% |
| CTTGGGGAAGCTGGATCAGG+AGG | - | chr7_4:33915963-33915982 | Msa1150470:CDS | 60.0% | |
| GAAGCTGGATCAGGAGGCCA+TGG | - | chr7_4:33915969-33915988 | Msa1150470:CDS | 60.0% | |
| ! | TCAGGAGGCCATGGTGGAGA+TGG | - | chr7_4:33915978-33915997 | Msa1150470:CDS | 60.0% |
| CTCCTCCTCCATCTCCACCA+TGG | + | chr7_4:33915989-33916008 | None:intergenic | 60.0% | |
| ! | CATGGTGGAGATGGAGGAGG+AGG | - | chr7_4:33915987-33916006 | Msa1150470:CDS | 60.0% |
| !! | GGCCATGGTGATGGTGGTGA+TGG | - | chr7_4:33916008-33916027 | Msa1150470:CDS | 60.0% |
| !! | GGTGATGGTGGTGATGGAGG+AGG | - | chr7_4:33916014-33916033 | Msa1150470:CDS | 60.0% |
| !! | GATGGTGGTGATGGAGGAGG+AGG | - | chr7_4:33916017-33916036 | Msa1150470:CDS | 60.0% |
| ! | GTGATGGAGGAGGAGGTGGA+TGG | - | chr7_4:33916024-33916043 | Msa1150470:CDS | 60.0% |
| GATGGAGGAGGAGGTGGATG+GGG | - | chr7_4:33916026-33916045 | Msa1150470:CDS | 60.0% | |
| GGTGGTTGCACTTGCGACGG+CGG | - | chr7_4:33912201-33912220 | Msa1150470:intron | 65.0% | |
| GGTGGCCGGGATTTGAACCC+CGG | - | chr7_4:33914552-33914571 | Msa1150470:intron | 65.0% | |
| GCTGGATCAGGAGGCCATGG+TGG | - | chr7_4:33915972-33915991 | Msa1150470:CDS | 65.0% | |
| ! | GGAGGCCATGGTGGAGATGG+AGG | - | chr7_4:33915981-33916000 | Msa1150470:CDS | 65.0% |
| ! | GGCCATGGTGGAGATGGAGG+AGG | - | chr7_4:33915984-33916003 | Msa1150470:CDS | 65.0% |
| GGAGATGGAGGAGGAGGCCA+TGG | - | chr7_4:33915993-33916012 | Msa1150470:CDS | 65.0% | |
| GGAGGAGGAGGCCATGGTGA+TGG | - | chr7_4:33915999-33916018 | Msa1150470:CDS | 65.0% | |
| !! | GGAGGAGGCCATGGTGATGG+TGG | - | chr7_4:33916002-33916021 | Msa1150470:CDS | 65.0% |
| !! | GGTGGTGATGGAGGAGGAGG+TGG | - | chr7_4:33916020-33916039 | Msa1150470:CDS | 65.0% |
| ACTTGCGACGGCGGCAGCCA+TGG | - | chr7_4:33912210-33912229 | Msa1150470:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 33912075 | 33916070 | 33912075 | ID=Msa1150470;Name=Msa1150470 |
| chr7_4 | mRNA | 33912075 | 33916070 | 33912075 | ID=Msa1150470-mRNA-1;Parent=Msa1150470;Name=Msa1150470-mRNA-1;_AED=0.34;_eAED=0.37;_QI=0|0|0|1|1|1|2|0|94 |
| chr7_4 | exon | 33915914 | 33916070 | 33915914 | ID=Msa1150470-mRNA-1:exon:8095;Parent=Msa1150470-mRNA-1 |
| chr7_4 | exon | 33912075 | 33912202 | 33912075 | ID=Msa1150470-mRNA-1:exon:8094;Parent=Msa1150470-mRNA-1 |
| chr7_4 | CDS | 33915914 | 33916070 | 33915914 | ID=Msa1150470-mRNA-1:cds;Parent=Msa1150470-mRNA-1 |
| chr7_4 | CDS | 33912075 | 33912202 | 33912075 | ID=Msa1150470-mRNA-1:cds;Parent=Msa1150470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
