AlfalfaGEDB | Msa1154660

M. sativa cultivar zhongmu-4 / Msa1154660

KEGG: K21994
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010087 GO:0010089 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154660	XP_039684041.1	97.046	237	6	1	1	236	1	237	6.77e-164	462

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154660	sp\|O22131\|LBD18_ARATH	50.667	225	95	4	23	233	40	262	4.44e-62	197

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154660	G7L095	97.046	237	6	1	1	236	1	237	3.23e-164	462

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TFs/TRs:

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Gene ID	Type	Classification
Msa1154660	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1051270	Msa1154660	0.820412	6.954271e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154660	MtrunA17_Chr7g0245871	96.522	230	7	1	8	236	15	244	6.92e-163	450
Msa1154660	MtrunA17_Chr8g0351701	56.744	215	87	5	20	233	23	232	1.90e-75	228
Msa1154660	MtrunA17_Chr8g0351721	63.571	140	42	2	3	136	1	137	3.72e-59	186
Msa1154660	MtrunA17_Chr7g0261031	71.154	104	30	0	17	120	5	108	3.76e-52	168
Msa1154660	MtrunA17_Chr1g0184271	60.938	128	42	2	20	141	12	137	6.14e-52	168
Msa1154660	MtrunA17_Chr7g0260971	65.179	112	39	0	10	121	4	115	5.73e-49	160
Msa1154660	MtrunA17_Chr6g0460951	59.350	123	44	1	19	135	39	161	6.67e-47	155
Msa1154660	MtrunA17_Chr1g0184281	63.889	108	39	0	7	114	2	109	3.51e-45	150
Msa1154660	MtrunA17_Chr5g0438091	51.724	145	63	2	13	157	32	169	1.38e-43	145
Msa1154660	MtrunA17_Chr5g0435641	63.725	102	37	0	18	119	5	106	5.04e-43	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154660	AT2G45420.1	50.667	225	95	4	23	233	40	262	4.51e-63	197
Msa1154660	AT4G00220.1	49.309	217	95	5	23	233	20	227	2.18e-59	187
Msa1154660	AT4G00210.1	68.939	132	31	2	6	137	2	123	2.66e-58	184
Msa1154660	AT2G45410.1	62.500	120	42	1	23	142	19	135	2.71e-51	165
Msa1154660	AT3G03760.1	72.642	106	28	1	19	123	50	155	4.46e-49	162
Msa1154660	AT3G58190.1	70.707	99	29	0	20	118	11	109	4.27e-48	158
Msa1154660	AT2G42430.1	60.504	119	44	1	3	121	1	116	2.17e-47	157
Msa1154660	AT5G06080.1	54.015	137	56	1	15	144	2	138	2.75e-46	152
Msa1154660	AT2G42440.1	65.686	102	35	0	17	118	4	105	9.11e-46	153
Msa1154660	AT2G31310.1	63.810	105	38	0	15	119	2	106	1.15e-43	145

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Find 78 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGCAAGCCCCACAA+GGG	0.669022	7_4:-42234880	None:intergenic
AAAGCCACATTAATTCAACT+GGG	0.678701	7_4:+42238057	Msa1154660:CDS
AACCACCGCCACAACCATGC+CGG	0.571081	7_4:+42238157	Msa1154660:CDS
AACTCTAGTGGCAGCGGAAG+CGG	0.447701	7_4:+42234833	Msa1154660:CDS
AAGCAGTGGAAGCCCTTGTG+GGG	0.605091	7_4:+42234868	Msa1154660:CDS
AATAAGTTACCTGTTGCTGA+AGG	0.502270	7_4:-42235129	None:intergenic
AATGTATCCAAACTCCTTCT+TGG	0.335322	7_4:+42235004	Msa1154660:CDS
ACTGGTCCTCTGTTGTTGCA+TGG	0.593499	7_4:-42238231	None:intergenic
AGCACCGCTACCACCACCAC+AGG	0.491142	7_4:+42238091	Msa1154660:CDS
AGCAGATGATGAGGCATTGG+AGG	0.508438	7_4:-42238369	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTTAGACTCATCTCTAAA+GGG	-	chr7_4:42234817-42234836	None:intergenic	30.0%
ATGTGAACATAAGAAGATGA+GGG	-	chr7_4:42235566-42235585	None:intergenic	30.0%
AATGTGAACATAAGAAGATG+AGG	-	chr7_4:42235567-42235586	None:intergenic	30.0%
TAGCTTCATTTATAAGCTCT+AGG	-	chr7_4:42235851-42235870	None:intergenic	30.0%
AAGAGGAAAACAAAAAAGGT+AGG	+	chr7_4:42236109-42236128	Msa1154660:intron	30.0%
AGAGGAAAACAAAAAAGGTA+GGG	+	chr7_4:42236110-42236129	Msa1154660:intron	30.0%
ATGGAAGTAACTAAAGAAGA+GGG	+	chr7_4:42236151-42236170	Msa1154660:intron	30.0%
GAGTGAAATTATTTGCATCA+AGG	-	chr7_4:42236412-42236431	None:intergenic	30.0%
TAATCTAACGGCTATAAGAA+TGG	+	chr7_4:42236706-42236725	Msa1154660:intron	30.0%
TATAAGTCCAAATAGCTAAG+TGG	-	chr7_4:42236888-42236907	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	42234783	42238470	42234783	ID=Msa1154660;Name=Msa1154660
chr7_4	mRNA	42234783	42238470	42234783	ID=Msa1154660-mRNA-1;Parent=Msa1154660;Name=Msa1154660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=41\|1\|1\|1\|1\|1\|2\|55\|236
chr7_4	exon	42234783	42235141	42234783	ID=Msa1154660-mRNA-1:exon:10371;Parent=Msa1154660-mRNA-1
chr7_4	exon	42238023	42238470	42238023	ID=Msa1154660-mRNA-1:exon:10372;Parent=Msa1154660-mRNA-1
chr7_4	five_prime_UTR	42234783	42234823	42234783	ID=Msa1154660-mRNA-1:five_prime_utr;Parent=Msa1154660-mRNA-1
chr7_4	CDS	42234824	42235141	42234824	ID=Msa1154660-mRNA-1:cds;Parent=Msa1154660-mRNA-1
chr7_4	CDS	42238023	42238415	42238023	ID=Msa1154660-mRNA-1:cds;Parent=Msa1154660-mRNA-1
chr7_4	three_prime_UTR	42238416	42238470	42238416	ID=Msa1154660-mRNA-1:three_prime_utr;Parent=Msa1154660-mRNA-1

Gene Sequence

>Msa1154660

ATGAGTCTAAACTCTAGTGGCAGCGGAAGCGGTGGTGGCGGCGGAAGCAGTGGAAGCCCTTGTGGGGCTTGCAAGTTTTTGAGGAGGAAGTGTGTGCAAGGGTGTGTTTTTGCTCCATACTTTGATTCAGAGCATGGTACAACACACTTTGCAGCTGTGCACAAAGTGTTTGGGGCTAGCAATGTATCCAAACTCCTTCTTGGCATTCCAGCTAGTAGGAGGCTTGATGCTGCAGTCTCTCTTTGCTATGAAGCTCAATCAAGGTTGAGAGATCCTATCTATGGTTGTGTTGGTCACATCGTTGCCCTTCAGCAACAGGTGATGAGTTTACAAGCTGAACTCTCCTACCTACAAAGCCACATTAATTCAACTGGGCTAACCCAACAAGCACCGCTACCACCACCACAGGCGACTGCAGCTCCAACAGTCTTCTCCTTTGCGGACCTACCACCAACCACCGCCACAACCATGCCGGTCACCTATGATATGTCTACACTTTTTGACTCAATGGGACAACCTTCATTGTCCATGCAACAACAGAGGACCAGTATTGATCCACGTCAATACTTAGCTGCTCATCATGCCCCAACATCAACCACCGCTGGGATTCAATCAGTGGCATGTGACCTTACTCATAGACAAATTGGCTCTTCATCTGTGCCATCCTCCAATGCCTCATCATCTGCTTCGTTTTCCAAATTTTCTAAATGA

Protein sequence

>Msa1154660

MSLNSSGSGSGGGGGSSGSPCGACKFLRRKCVQGCVFAPYFDSEHGTTHFAAVHKVFGASNVSKLLLGIPASRRLDAAVSLCYEAQSRLRDPIYGCVGHIVALQQQVMSLQAELSYLQSHINSTGLTQQAPLPPPQATAAPTVFSFADLPPTTATTMPVTYDMSTLFDSMGQPSLSMQQQRTSIDPRQYLAAHHAPTSTTAGIQSVACDLTHRQIGSSSVPSSNASSSASFSKFSK*