AlfalfaGEDB | Msa1156790

M. sativa cultivar zhongmu-4 / Msa1156790

KEGG: K04730
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156790	XP_003624321.1	89.474	1083	108	4	1	1082	1	1078	0.0	1924

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156790	sp\|Q8VZG8\|MIK2_ARATH	43.669	1074	539	20	4	1057	14	1041	0.0	821

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156790	G7KU89	89.474	1083	108	4	1	1082	1	1078	0.0	1924

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1029920	Msa1156790	0.863733	2.016197e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1156790	MtrunA17_Chr7g0250491	89.474	1083	108	4	1	1082	1	1078	1924
Msa1156790	MtrunA17_Chr7g0250381	63.308	1052	369	10	37	1082	21	1061	1281
Msa1156790	MtrunA17_Chr7g0250471	62.092	1071	382	10	14	1081	9	1058	1271
Msa1156790	MtrunA17_Chr5g0439291	52.342	1089	448	12	5	1081	2	1031	1004
Msa1156790	MtrunA17_Chr1g0165221	49.640	1110	473	10	32	1062	28	1130	997
Msa1156790	MtrunA17_Chr1g0165191	47.729	1167	500	13	17	1081	13	1171	995
Msa1156790	MtrunA17_Chr1g0165971	51.848	1055	490	10	17	1062	13	1058	975
Msa1156790	MtrunA17_Chr1g0165141	47.803	1138	507	12	7	1067	6	1133	975
Msa1156790	MtrunA17_Chr1g0165231	48.813	1137	468	13	32	1062	28	1156	956
Msa1156790	MtrunA17_Chr1g0165301	48.813	1137	468	13	32	1062	28	1156	956

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156790	AT4G08850.1	43.669	1074	539	20	4	1057	14	1041	0.0	821
Msa1156790	AT1G35710.1	42.287	1102	534	20	40	1057	33	1116	0.0	792
Msa1156790	AT4G08850.2	43.354	978	493	18	4	962	14	949	0.0	737
Msa1156790	AT1G17230.1	34.131	1087	601	17	40	1056	27	1068	0.0	570
Msa1156790	AT1G17230.2	34.131	1087	601	17	40	1056	27	1068	0.0	569
Msa1156790	AT2G33170.2	34.770	1044	615	17	67	1056	64	1095	1.03e-175	545
Msa1156790	AT2G33170.1	34.770	1044	615	17	67	1056	64	1095	1.03e-175	545
Msa1156790	AT5G63930.1	34.496	1061	635	18	40	1056	30	1074	6.37e-174	540
Msa1156790	AT5G63930.2	34.980	992	612	15	82	1056	35	1010	3.70e-168	523
Msa1156790	AT5G63930.2	34.596	581	348	6	101	680	5	554	2.90e-82	290

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Find 243 sgRNAs with CRISPR-Local

Find 642 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGTTGGAATGGTGC+CGG	0.541132	7_4:-45308707	None:intergenic
AAAATCACAATCACCTTTAG+TGG	0.380703	7_4:+45310385	Msa1156790:CDS
AAAATGAGAATCTTGAATGT+TGG	0.522526	7_4:-45309329	None:intergenic
AAACTTCATTCGAGAATAGA+TGG	0.310998	7_4:+45309216	Msa1156790:CDS
AAACTTGAAGATTTCGATGT+AGG	0.460333	7_4:+45308454	Msa1156790:CDS
AAAGAAAATACTGAAATAGT+TGG	0.431894	7_4:-45310451	None:intergenic
AAAGATTGTTAACAGACAAT+TGG	0.395476	7_4:-45307820	None:intergenic
AAAGGTGGAGCTTGCCCAGC+TGG	0.443313	7_4:-45308309	None:intergenic
AAAGTTCAAAACATTTATTT+TGG	0.226066	7_4:-45307147	None:intergenic
AAATAATCAAGCCTTTCTCA+AGG	0.615037	7_4:+45308801	Msa1156790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTACAGATTCTATGGAA+TGG	-	chr7_4:45306696-45306715	None:intergenic	30.0%
GCTAGATTCTTTGTGAAATT+GGG	-	chr7_4:45306771-45306790	None:intergenic	30.0%
AGCTAGATTCTTTGTGAAAT+TGG	-	chr7_4:45306772-45306791	None:intergenic	30.0%
ATTCGCTTCATTTGATTCAT+TGG	-	chr7_4:45306868-45306887	None:intergenic	30.0%
AGAGGTTGTTGTATATGTTT+AGG	-	chr7_4:45307091-45307110	None:intergenic	30.0%
TTGGATATGTTACCAATTTG+TGG	-	chr7_4:45307131-45307150	None:intergenic	30.0%
TGGACATTGAGAAGTTTAAA+AGG	+	chr7_4:45307212-45307231	Msa1156790:CDS	30.0%
CTTTCTGTATGTCAACTAAA+TGG	+	chr7_4:45307242-45307261	Msa1156790:CDS	30.0%
TTCTGTATGTCAACTAAATG+GGG	+	chr7_4:45307244-45307263	Msa1156790:CDS	30.0%
CAAATCTAGATGTGATAGTT+TGG	-	chr7_4:45307297-45307316	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	45306527	45310644	45306527	ID=Msa1156790;Name=Msa1156790
chr7_4	mRNA	45306527	45310644	45306527	ID=Msa1156790-mRNA-1;Parent=Msa1156790;Name=Msa1156790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=235\|1\|1\|1\|1\|1\|2\|199\|1082
chr7_4	exon	45306527	45309648	45306527	ID=Msa1156790-mRNA-1:exon:11778;Parent=Msa1156790-mRNA-1
chr7_4	exon	45310084	45310644	45310084	ID=Msa1156790-mRNA-1:exon:11779;Parent=Msa1156790-mRNA-1
chr7_4	five_prime_UTR	45306527	45306761	45306527	ID=Msa1156790-mRNA-1:five_prime_utr;Parent=Msa1156790-mRNA-1
chr7_4	CDS	45306762	45309648	45306762	ID=Msa1156790-mRNA-1:cds;Parent=Msa1156790-mRNA-1
chr7_4	CDS	45310084	45310445	45310084	ID=Msa1156790-mRNA-1:cds;Parent=Msa1156790-mRNA-1
chr7_4	three_prime_UTR	45310446	45310644	45310446	ID=Msa1156790-mRNA-1:three_prime_utr;Parent=Msa1156790-mRNA-1

Gene Sequence

>Msa1156790

ATGGTACCCAATTTCACAAAGAATCTAGCTTGTTGGCAGATTCTCTTCATAATACTTTGGGTTCGTTTAACAATCATTTTTCCTCAACAAGTTGCTGGTTTTTCCAATGAATCAAATGAAGCGAATGCTCTGCTGAAATGGAAAGATAGCTTTGACAACCACAGCCAAGCTCTGTTGCCAACTTGGACAAGAACTACTAGTCCATGCAACTGGGAAGGAATTCAGTGTGACAAATCCAAATCCATCTCTAGAATTAATCTTGCAAACTATGGACTAAAAGGTACACTCCACACTCTCATCTTTTCCTCATTCCCCAACCTCCTCAGCCTAAACATATACAACAACCTCTTTTATGGAACCATTCCTCCACAAATTGGTAACATATCCAAAATAAATGTTTTGAACTTTTCTTTAAACCCACAACTTGAAGGTTCCATCCCCAAAGAAATGTGGACATTGAGAAGTTTAAAAGGTCTTGATCTTTCTGTATGTCAACTAAATGGGGAACTTCCTAATTCCATAACAAACTTGTCCAAACTATCACATCTAGATTTGGCTGATAATAAATTTTCCATTGGTTACATTCCTCATGAGATTGGAAAACTGAACCACTTGGAGTATCTATCAATTGCTGGTTGTAACCGTATTGGTCCCATTCCGCAAGGAATTGGAATGTTGACAAAACTTGGTTTTATGGATTTGCAAAGGAACACTCTATCTGGTACCATCCCAGAATCAATTGGTAACATGACCAGTTTAAATAAACTTTACCTTGCTAATAACACAATGTTGTCTGGACAAATCCCAGTATCCTTGTGGAACATGTCTTACTTGTCCATACTCTACCTTAATGGCAATAACCTTTCTGGATCAGTCCCTCCTTCGATACAAAACTTGGCCAATTTGACTGACCTTGTACTTATTGACAACTACTTTTCTGGACCTATTCCTTCCACCATTGGAAATTTGACAAAACTATCGAATGTACAATTACGCAGAAATAATTTTTCTGGATCAATTCCTAGTTCTATTGGAAATCTAATCAATGTGCTCAACCTCCAATTGTCTGTTAACAATCTTTCTGGAACTATTCCGGAAACATTTGGAAATATGACAACGCTAAGCATCTTGGACTTGAGCACCAATAAACTTCATGGTAGCATTCCACAAAGCCTATATAACTTTACCAACTGGTATATATTTGAATTAGCCGAGAATGATTTTACTGGCCATTTGCCACCTCAAATATGTTCTGGTGGACATCTAAAAGTCTTCAATGCTTTTCGCAACCATTTTACGGGTCCAGTACCAACTAGTTTGAAAAATTGCACAAGCATTGTAAGAATCAGAATTCAGGATAATCAAATAGAAGGAGATATATCACAAGATTTTGGTGTATATCCGAAGTTGAAATACCTTGAACTGAGTGACAATAAATTTCATGGACACATTTCACCAAACTGGGGGAAGTGCCCTAATCTTACTAACTTCATGATATCCAACAATAATATCACTGGTGTCATACCATTAACACTTTTGGAGGCAAACCAGCTGGGCAAGCTCCACCTTTCTTCAAACCACTTAACAGGAAAGCTTCCAAAGGAACTTGGATACCTGAAATCATTACTTGAAGTTAAGATCAGCAACAATCAATTTTCAGGAAATATTCCAAGTGAAATTGGATTGCTACAGAAACTTGAAGATTTCGATGTAGGAGGAAACATGTTGAGTGGAACAATACCAAAAGAAGTTGTGAAGTTGCCCTTGTTACGGAACTTGAACTTGAGCAAAAACAAAATTGAAGGGAGAATTCCCTCAGACTTTGTCCTGTCACAGCAACTTGAATCTCTTGATCTTAGCGGGAATTTGTTGAGTGGAACAATACCAACAGTGCTAGGAGAATTGAAGCAATTGCAAATGCTGAATTTGTCATGCAATAATCTTTCCGGCACCATTCCAACCAGTTTTGAGGATGCCATGCATATGTCAAGCTTGACTTATGTCAACATATCAAACAACCATTTAGAAGGGAGGCTACCAAATAATCAAGCCTTTCTCAAGGCTCCAATTGAATCATTAGAAAATAACAAAGGCTTGTGTGGTAATCACACTGGCTTAGTGCTTTGCCAAACCAGCCACATTCAAAAGAGACACGAGTCCCTCCTACTAGTATTGTTTGTTATCTTAGGTGCTCTAGTACTAGTATTTTGTGGGTTGGGAATTTCAATGTATATTCTTCATCGGAGAGCAAGAAAGACAAAAAACAAGGATAAAGATTCTAATGAAGCACAGGCAGAAGAAGTCTTTTCCATATGGAGTCATGATGGAAAAATGATGTTTGAGAATATAATTGAAGCTACCAATAATTTTGATGATGAATATCTCATTGGAGTGGGAGGGGAAGGATCTGTTTACAAGGCAAAGTTGTCTGCAGATATGGTTGTTGCAGTGAAGAAACTTCATTCGAGAATAGATGGGGAAAGGCCCAATATCAAAGCCTTTGAAAATGAAATTCAAGCTTTGACAGAAATCAAGCATCGTAACATCATTAAGCTCTATGGATATTGCCAACATTCAAGATTCTCATTTTTGGTTTATAAGTTCTTGGAAGGTGGAACTTTGACTCAAATGTTAAACAATGACACACAAGCCATTGCATTTGACTGGGAAAAGAGGGTGAATGTTGTTAGAGGTGTTGCCGATGCTTTGGCCTACATGCATCATGACTGCATACCTCCAATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTTTGGATATATCATATGAAGCTCAACTTTCTGATTTTGGAACAGCCAAGTTTCTAAAGCCTGATTCAAGCAGCTGGACCGCATTTGCAGGCACATATGGATATGCAGCTCCAGAGTTTGCTCAGACGATGGAAGTGACTGAGAAGTGTGACGTTTACAGCTTTGGAGTTCTTTGTTTTGAAATCCTTCTGGGAAAGCATCCAGCAGATTTCATTTCTTCGTTGTTCTCATCATCTACAGCAACAATGACTTATAATTTGCTGTTGATTGATGTGTTAGACAACCGCCCTCCTCAACCTACAAATTCAATTGTTGGGGACATCATCTTGATTACAAGATTGGCATTTTCTTGCTTGAGTGAGAGTCCATCTTCTCGCCCCACCATGGATTATGTTTCAAAAGAACTTTTGATGAGAAAATCACAATCACCTTTAGTGGAACAGTTCTCACATATCAGACTTGGACAACTCCACTAA

Protein sequence

>Msa1156790

MVPNFTKNLACWQILFIILWVRLTIIFPQQVAGFSNESNEANALLKWKDSFDNHSQALLPTWTRTTSPCNWEGIQCDKSKSISRINLANYGLKGTLHTLIFSSFPNLLSLNIYNNLFYGTIPPQIGNISKINVLNFSLNPQLEGSIPKEMWTLRSLKGLDLSVCQLNGELPNSITNLSKLSHLDLADNKFSIGYIPHEIGKLNHLEYLSIAGCNRIGPIPQGIGMLTKLGFMDLQRNTLSGTIPESIGNMTSLNKLYLANNTMLSGQIPVSLWNMSYLSILYLNGNNLSGSVPPSIQNLANLTDLVLIDNYFSGPIPSTIGNLTKLSNVQLRRNNFSGSIPSSIGNLINVLNLQLSVNNLSGTIPETFGNMTTLSILDLSTNKLHGSIPQSLYNFTNWYIFELAENDFTGHLPPQICSGGHLKVFNAFRNHFTGPVPTSLKNCTSIVRIRIQDNQIEGDISQDFGVYPKLKYLELSDNKFHGHISPNWGKCPNLTNFMISNNNITGVIPLTLLEANQLGKLHLSSNHLTGKLPKELGYLKSLLEVKISNNQFSGNIPSEIGLLQKLEDFDVGGNMLSGTIPKEVVKLPLLRNLNLSKNKIEGRIPSDFVLSQQLESLDLSGNLLSGTIPTVLGELKQLQMLNLSCNNLSGTIPTSFEDAMHMSSLTYVNISNNHLEGRLPNNQAFLKAPIESLENNKGLCGNHTGLVLCQTSHIQKRHESLLLVLFVILGALVLVFCGLGISMYILHRRARKTKNKDKDSNEAQAEEVFSIWSHDGKMMFENIIEATNNFDDEYLIGVGGEGSVYKAKLSADMVVAVKKLHSRIDGERPNIKAFENEIQALTEIKHRNIIKLYGYCQHSRFSFLVYKFLEGGTLTQMLNNDTQAIAFDWEKRVNVVRGVADALAYMHHDCIPPIVHRDISSKNVLLDISYEAQLSDFGTAKFLKPDSSSWTAFAGTYGYAAPEFAQTMEVTEKCDVYSFGVLCFEILLGKHPADFISSLFSSSTATMTYNLLLIDVLDNRPPQPTNSIVGDIILITRLAFSCLSESPSSRPTMDYVSKELLMRKSQSPLVEQFSHIRLGQLH*