Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158080 | XP_013449475.1 | 96.516 | 287 | 5 | 1 | 1 | 287 | 1 | 282 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158080 | sp|O82768|HIS2_ARATH | 75.319 | 235 | 52 | 2 | 48 | 281 | 51 | 280 | 1.90e-128 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158080 | A0A072U2X9 | 96.516 | 287 | 5 | 1 | 1 | 287 | 1 | 282 | 0.0 | 571 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0322570 | Msa1158080 | 0.806394 | 8.403221e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158080 | MtrunA17_Chr7g0252441 | 96.516 | 287 | 5 | 1 | 1 | 287 | 1 | 282 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158080 | AT1G31860.1 | 75.319 | 235 | 52 | 2 | 48 | 281 | 51 | 280 | 1.93e-129 | 369 |
| Msa1158080 | AT1G31860.2 | 73.659 | 205 | 48 | 2 | 78 | 281 | 1 | 200 | 1.64e-108 | 313 |
| Msa1158080 | AT1G31860.3 | 76.023 | 171 | 35 | 2 | 48 | 217 | 51 | 216 | 9.39e-93 | 274 |
Find 99 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTGTTCCACCGATTTC+TGG | 0.137364 | 7_4:-47198061 | None:intergenic |
| ATTTGTCCAACTTAGATATT+TGG | 0.150858 | 7_4:+47198250 | Msa1158080:three_prime_UTR |
| CACTGTTGGACGGTGTAAAA+TGG | 0.157529 | 7_4:+47196919 | Msa1158080:CDS |
| CAAGCAACATATTTAGTTTC+TGG | 0.177202 | 7_4:+47198108 | Msa1158080:three_prime_UTR |
| ATAGTTATTATAATATTATT+TGG | 0.219017 | 7_4:-47198391 | None:intergenic |
| ATGGACATTGATGAAATTAT+TGG | 0.223699 | 7_4:-47197105 | None:intergenic |
| ATTATAATAACTATTTATTA+TGG | 0.245921 | 7_4:+47198400 | Msa1158080:three_prime_UTR |
| ATGAAGGGAAGATGTGAAAT+TGG | 0.271843 | 7_4:-47194118 | None:intergenic |
| GTTGGTCCTGTAACCGCATC+TGG | 0.276016 | 7_4:-47195577 | None:intergenic |
| AAAACGAGAGATTGCACTTC+TGG | 0.284409 | 7_4:-47195539 | None:intergenic |
| TTCATCGCTGCTATTCATTC+AGG | 0.317541 | 7_4:+47194136 | Msa1158080:five_prime_UTR |
| ATTATTGGAGGTCTCTCCTT+TGG | 0.330042 | 7_4:-47197090 | None:intergenic |
| GCTATCCCAGATGCGGTTAC+AGG | 0.343137 | 7_4:+47195571 | Msa1158080:CDS |
| TAATTCTTGTGATGATAGTA+TGG | 0.349848 | 7_4:-47198335 | None:intergenic |
| ACGAGTTGTTACCATGAATA+GGG | 0.355971 | 7_4:+47198152 | Msa1158080:three_prime_UTR |
| TGAAGGGAAGATGTGAAATT+GGG | 0.365325 | 7_4:-47194117 | None:intergenic |
| GTGTGGCAGGTAGGCCCATC+AGG | 0.375048 | 7_4:-47197294 | None:intergenic |
| CTACTACCTCTGCCTTGCGC+TGG | 0.376948 | 7_4:-47197522 | None:intergenic |
| ACAGGTTGAAGGAAACAAAT+TGG | 0.394156 | 7_4:+47197462 | Msa1158080:intron |
| GTTGAGTTAGAAAGTGAAGA+TGG | 0.410914 | 7_4:-47194058 | None:intergenic |
| AAGAAAACGGAAAGCCTTCA+TGG | 0.412346 | 7_4:+47197545 | Msa1158080:CDS |
| TCATTGTTCCACCGATTTCT+GGG | 0.414624 | 7_4:-47198060 | None:intergenic |
| GATGTGAAATTGGGGTTGTA+AGG | 0.419545 | 7_4:-47194108 | None:intergenic |
| GCTAGAGTTACCCCTATTCA+TGG | 0.425615 | 7_4:-47198163 | None:intergenic |
| TGTGGCCTTCCGAGAAGATA+TGG | 0.431591 | 7_4:-47197036 | None:intergenic |
| AACAACTCGTCTTGTACATC+TGG | 0.433413 | 7_4:-47198139 | None:intergenic |
| TAAGAGGCGTTTCAATTCAA+TGG | 0.438518 | 7_4:+47195476 | Msa1158080:exon |
| AGTTGCTGTGCTCTAAAATC+AGG | 0.447400 | 7_4:+47197593 | Msa1158080:CDS |
| GACGAGTTGTTACCATGAAT+AGG | 0.450522 | 7_4:+47198151 | Msa1158080:three_prime_UTR |
| TACTACCTCTGCCTTGCGCT+GGG | 0.453376 | 7_4:-47197521 | None:intergenic |
| TGTTTCTGCCCCTGTGTGGC+AGG | 0.457775 | 7_4:-47197307 | None:intergenic |
| TGGTATCTGCTACAGGTTGA+AGG | 0.459991 | 7_4:+47197451 | Msa1158080:intron |
| CATGGTTCTGTTGGCACTAA+AGG | 0.463951 | 7_4:+47197956 | Msa1158080:CDS |
| TGGCTACAACCATATCTTCT+CGG | 0.473692 | 7_4:+47197027 | Msa1158080:CDS |
| CGAGTTCCAAATATCTAAGT+TGG | 0.475665 | 7_4:-47198256 | None:intergenic |
| TGAATGAATAGCAGCGATGA+AGG | 0.476212 | 7_4:-47194134 | None:intergenic |
| AAGTCGCACAACCCAGAAAT+CGG | 0.479737 | 7_4:+47198049 | Msa1158080:CDS |
| TCTGCCCCTGTGTGGCAGGT+AGG | 0.494555 | 7_4:-47197303 | None:intergenic |
| TCTTTCAACAAGTCAAAGAC+TGG | 0.497321 | 7_4:-47197342 | None:intergenic |
| CAACTTAGATAATATACCTT+GGG | 0.500220 | 7_4:+47197268 | Msa1158080:intron |
| CTATCATGCCATGGTTCTGT+TGG | 0.502158 | 7_4:+47197947 | Msa1158080:CDS |
| GGTGTAAAATGGGATGATAA+AGG | 0.507922 | 7_4:+47196930 | Msa1158080:CDS |
| ACTGTTGGACGGTGTAAAAT+GGG | 0.513858 | 7_4:+47196920 | Msa1158080:CDS |
| AAGTGAAGATGGAGAAAGAG+AGG | 0.513906 | 7_4:-47194047 | None:intergenic |
| GACATTGATGAAATTATTGG+AGG | 0.523136 | 7_4:-47197102 | None:intergenic |
| GTCGGTCACGGTCATCGTTG+TGG | 0.523921 | 7_4:+47197066 | Msa1158080:CDS |
| TGACTTGTTGAAAGAAGAAG+AGG | 0.531116 | 7_4:+47197350 | Msa1158080:CDS |
| TCTTTCTACTTGCAGAGAAG+AGG | 0.537580 | 7_4:+47197851 | Msa1158080:intron |
| ATTGCACTTCTGGAAACCTC+TGG | 0.541828 | 7_4:-47195529 | None:intergenic |
| AAAATGGGATGATAAAGGTT+TGG | 0.543571 | 7_4:+47196935 | Msa1158080:CDS |
| AATAACCGCTTTGTCCATGA+AGG | 0.545592 | 7_4:-47197559 | None:intergenic |
| GATGGGCCTACCTGCCACAC+AGG | 0.546338 | 7_4:+47197297 | Msa1158080:CDS |
| GCAGAGGTAGTAGAAGAAAA+CGG | 0.548101 | 7_4:+47197532 | Msa1158080:CDS |
| ACAACTTAGATAATATACCT+TGG | 0.549394 | 7_4:+47197267 | Msa1158080:intron |
| ATGGGCCTACCTGCCACACA+GGG | 0.551373 | 7_4:+47197298 | Msa1158080:CDS |
| CGGTCATCGTTGTGGACCAA+AGG | 0.552026 | 7_4:+47197074 | Msa1158080:CDS |
| CACAATCAAGAAAGACATCA+TGG | 0.552848 | 7_4:-47197124 | None:intergenic |
| ATATACCTTGGGAAACCTGA+TGG | 0.557467 | 7_4:+47197279 | Msa1158080:CDS |
| GCATCTGGGATAGCCATGGC+TGG | 0.559498 | 7_4:-47195562 | None:intergenic |
| GTCACGCACTGCTTCAGAGA+TGG | 0.565116 | 7_4:+47197914 | Msa1158080:CDS |
| TTTACAGTTGCACAGTCAAG+TGG | 0.566585 | 7_4:+47195450 | Msa1158080:intron |
| CACAGTCAAGTGGCTCTAAG+AGG | 0.567636 | 7_4:+47195460 | Msa1158080:five_prime_UTR |
| AATATCCCAGCGCAAGGCAG+AGG | 0.568929 | 7_4:+47197516 | Msa1158080:CDS |
| AGAAGATATGGTTGTAGCCA+CGG | 0.570030 | 7_4:-47197024 | None:intergenic |
| TTGGTCCTGTAACCGCATCT+GGG | 0.575216 | 7_4:-47195576 | None:intergenic |
| TGATGTACTCTATCATGCCA+TGG | 0.578899 | 7_4:+47197938 | Msa1158080:CDS |
| TAAATTGACCACATTACAAG+AGG | 0.582351 | 7_4:-47198282 | None:intergenic |
| CACATGCTTCAATCCGCCAG+AGG | 0.586849 | 7_4:+47195513 | Msa1158080:CDS |
| TATACCTTGGGAAACCTGAT+GGG | 0.588739 | 7_4:+47197280 | Msa1158080:CDS |
| GAATGAATAGCAGCGATGAA+GGG | 0.599402 | 7_4:-47194133 | None:intergenic |
| GTCAACAATATCCCAGCGCA+AGG | 0.606963 | 7_4:+47197510 | Msa1158080:CDS |
| GGAAGGCCACATTCTATAGT+CGG | 0.610737 | 7_4:+47197048 | Msa1158080:CDS |
| CAGGTAGACTCACTGTTGGA+CGG | 0.614205 | 7_4:+47196909 | Msa1158080:intron |
| GCATAGAAGCAAAAGCTAAG+TGG | 0.619127 | 7_4:-47195599 | None:intergenic |
| TACAACCATATCTTCTCGGA+AGG | 0.619181 | 7_4:+47197031 | Msa1158080:CDS |
| CGAGTTGTTACCATGAATAG+GGG | 0.620499 | 7_4:+47198153 | Msa1158080:three_prime_UTR |
| AACCGCATCTGGGATAGCCA+TGG | 0.622178 | 7_4:-47195566 | None:intergenic |
| GCACTTCTGGAAACCTCTGG+CGG | 0.626654 | 7_4:-47195526 | None:intergenic |
| TATGCACACATCTGACCCCA+AGG | 0.631404 | 7_4:+47195617 | Msa1158080:CDS |
| CTTTGCAAACAGAGAAGCCG+TGG | 0.635061 | 7_4:+47197007 | Msa1158080:CDS |
| AGAAGCAAAAGCTAAGTGGT+TGG | 0.638559 | 7_4:-47195595 | None:intergenic |
| ACTCGTATCCTCTTGTAATG+TGG | 0.638626 | 7_4:+47198274 | Msa1158080:three_prime_UTR |
| CCACATTCTATAGTCGGTCA+CGG | 0.639280 | 7_4:+47197054 | Msa1158080:CDS |
| TAGGCCCATCAGGTTTCCCA+AGG | 0.643905 | 7_4:-47197284 | None:intergenic |
| TGAAACACTAGAGAATAATG+AGG | 0.646491 | 7_4:+47197887 | Msa1158080:CDS |
| ATAGCTCAGAATGTTGACAC+AGG | 0.647706 | 7_4:+47196966 | Msa1158080:CDS |
| AGCCATGGCTATCCCAGATG+CGG | 0.651262 | 7_4:+47195564 | Msa1158080:CDS |
| TTGTCAGGTAGACTCACTGT+TGG | 0.652198 | 7_4:+47196905 | Msa1158080:intron |
| TAGCTCAGAATGTTGACACA+GGG | 0.653091 | 7_4:+47196967 | Msa1158080:CDS |
| CTTTAGTGCCAACAGAACCA+TGG | 0.657861 | 7_4:-47197955 | None:intergenic |
| GAAGGGAAGATGTGAAATTG+GGG | 0.659208 | 7_4:-47194116 | None:intergenic |
| ACAGGGGCAATACTGATGCA+AGG | 0.659548 | 7_4:+47196984 | Msa1158080:CDS |
| AGCATGTTTCTGCCCCTGTG+TGG | 0.667419 | 7_4:-47197311 | None:intergenic |
| GGATGATAAAGGTTTGGCTG+TGG | 0.671785 | 7_4:+47196941 | Msa1158080:CDS |
| TCGCACAACCCAGAAATCGG+TGG | 0.673876 | 7_4:+47198052 | Msa1158080:CDS |
| CCGTGACCGACTATAGAATG+TGG | 0.681377 | 7_4:-47197054 | None:intergenic |
| GGATTGAAGCATGTGAACGT+TGG | 0.704472 | 7_4:-47195505 | None:intergenic |
| GAAAGCCTTCATGGACAAAG+CGG | 0.708284 | 7_4:+47197554 | Msa1158080:CDS |
| AGCTCAGAATGTTGACACAG+GGG | 0.720988 | 7_4:+47196968 | Msa1158080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTAAAAAATAAATAAATG+AGG | + | chr7_4:47196049-47196068 | Msa1158080:intron | 10.0% |
| !! | AAAATAAAATTAATGTTTCA+TGG | - | chr7_4:47197752-47197771 | None:intergenic | 10.0% |
| !! | GAATAATTTCATCAAATATA+TGG | - | chr7_4:47194267-47194286 | None:intergenic | 15.0% |
| !!! | ATTTTTAATTAAGTCTGAAT+TGG | + | chr7_4:47194309-47194328 | Msa1158080:intron | 15.0% |
| !! | TTATATCAATGTTGTAATTA+CGG | + | chr7_4:47194498-47194517 | Msa1158080:intron | 15.0% |
| !! | AATAAGAAGATATAAACAAT+GGG | + | chr7_4:47194869-47194888 | Msa1158080:intron | 15.0% |
| !!! | AAATGTTTTTTTATAACGTA+AGG | + | chr7_4:47195288-47195307 | Msa1158080:intron | 15.0% |
| !! | TAAAAATGTAAAAGAATTTG+AGG | - | chr7_4:47196717-47196736 | None:intergenic | 15.0% |
| !! | TATTATTAACAGCATATTTA+CGG | - | chr7_4:47196746-47196765 | None:intergenic | 15.0% |
| !! | TAAAAAATGAACATTTGACA+TGG | + | chr7_4:47194466-47194485 | Msa1158080:intron | 20.0% |
| !!! | TTACAACATTGGTTTATATA+AGG | + | chr7_4:47194651-47194670 | Msa1158080:intron | 20.0% |
| !!! | TTTATATAAGGCATTCTTAT+TGG | + | chr7_4:47194663-47194682 | Msa1158080:intron | 20.0% |
| !!! | ATAACATAAGCAATTTTTGT+CGG | + | chr7_4:47194792-47194811 | Msa1158080:intron | 20.0% |
| !! | GAATAAGAAGATATAAACAA+TGG | + | chr7_4:47194868-47194887 | Msa1158080:intron | 20.0% |
| !!! | ACTAGTTTCTTTCTTATATT+TGG | + | chr7_4:47195661-47195680 | Msa1158080:intron | 20.0% |
| !! | AATCAAACTAAACAAAACAA+AGG | + | chr7_4:47195884-47195903 | Msa1158080:intron | 20.0% |
| !! | ATCAAACTAAACAAAACAAA+GGG | + | chr7_4:47195885-47195904 | Msa1158080:intron | 20.0% |
| !! | AATTGGACAATAAAAAAAGT+TGG | - | chr7_4:47195912-47195931 | None:intergenic | 20.0% |
| !! | AAATAACAATATTCTCAGAT+AGG | - | chr7_4:47196145-47196164 | None:intergenic | 20.0% |
| !!! | TGTTATTTTATAGATAGACA+AGG | + | chr7_4:47196157-47196176 | Msa1158080:intron | 20.0% |
| !!! | CTCTTGTTTTGAAAAATTAT+TGG | + | chr7_4:47196367-47196386 | Msa1158080:intron | 20.0% |
| !! | GTTATTATCACAATTTCAAT+AGG | - | chr7_4:47196627-47196646 | None:intergenic | 20.0% |
| !! | TTTGTATTTCTTAGTTCAAA+TGG | + | chr7_4:47196662-47196681 | Msa1158080:intron | 20.0% |
| !! | TTGTATTTCTTAGTTCAAAT+GGG | + | chr7_4:47196663-47196682 | Msa1158080:intron | 20.0% |
| !! | TATTATCTAAGTTGTTATCA+AGG | - | chr7_4:47197262-47197281 | None:intergenic | 20.0% |
| !! | TTATTCAACAAAAATCACAT+GGG | - | chr7_4:47198368-47198387 | None:intergenic | 20.0% |
| !! | AAAGTTTATGCATTTTGTTG+AGG | + | chr7_4:47194426-47194445 | Msa1158080:intron | 25.0% |
| ! | AAACCAATGTTGTAAAATAG+TGG | - | chr7_4:47194646-47194665 | None:intergenic | 25.0% |
| ! | GACAAAAATTGCTTATGTTA+TGG | - | chr7_4:47194793-47194812 | None:intergenic | 25.0% |
| ! | ATATGGTAAAAAAGTTCACA+GGG | - | chr7_4:47195357-47195376 | None:intergenic | 25.0% |
| !!! | TGTGAACTTTTTTACCATAT+GGG | + | chr7_4:47195357-47195376 | Msa1158080:intron | 25.0% |
| ! | CTTTCTTATATTTGGACAAT+TGG | + | chr7_4:47195669-47195688 | Msa1158080:intron | 25.0% |
| ! | AACATATCAACTGAAAATGA+AGG | - | chr7_4:47195776-47195795 | None:intergenic | 25.0% |
| !! | TTAAATGACAGTTTTCTTGT+TGG | + | chr7_4:47195970-47195989 | Msa1158080:intron | 25.0% |
| ! | AAATAAATAAATGAGGAACC+TGG | + | chr7_4:47196056-47196075 | Msa1158080:intron | 25.0% |
| ! | TACAATTATATTCATGAACC+AGG | - | chr7_4:47196077-47196096 | None:intergenic | 25.0% |
| ! | CAGTCAAATTGACAATAAAA+TGG | - | chr7_4:47196315-47196334 | None:intergenic | 25.0% |
| ! | AAGTCATGCTTATTTGTAAA+TGG | + | chr7_4:47196411-47196430 | Msa1158080:intron | 25.0% |
| ! | TTATCAGTATCATGATGAAT+GGG | - | chr7_4:47196475-47196494 | None:intergenic | 25.0% |
| ! | ATTATCAGTATCATGATGAA+TGG | - | chr7_4:47196476-47196495 | None:intergenic | 25.0% |
| ! | TTGAACTAAGAAATACAAAC+TGG | - | chr7_4:47196661-47196680 | None:intergenic | 25.0% |
| ! | TGTATTTCTTAGTTCAAATG+GGG | + | chr7_4:47196664-47196683 | Msa1158080:intron | 25.0% |
| ! | TTAATGTGAAACAGAAAACA+AGG | - | chr7_4:47196873-47196892 | None:intergenic | 25.0% |
| !! | TAAAAAGCTAAACTTTTGTC+AGG | + | chr7_4:47196890-47196909 | Msa1158080:intron | 25.0% |
| ! | ATGGACATTGATGAAATTAT+TGG | - | chr7_4:47197108-47197127 | None:intergenic | 25.0% |
| ! | AAAAAGTCAATGCAGAAAAA+CGG | - | chr7_4:47197174-47197193 | None:intergenic | 25.0% |
| !! | TTGTTATTCTTTGTATCATG+TGG | + | chr7_4:47197213-47197232 | Msa1158080:intron | 25.0% |
| ! | ACAACTTAGATAATATACCT+TGG | + | chr7_4:47197267-47197286 | Msa1158080:intron | 25.0% |
| ! | CAACTTAGATAATATACCTT+GGG | + | chr7_4:47197268-47197287 | Msa1158080:intron | 25.0% |
| ! | TAGCTTCAATCAATTAAAAC+AGG | + | chr7_4:47197374-47197393 | Msa1158080:intron | 25.0% |
| !! | CATGAAGAATATGATTTTTG+GGG | - | chr7_4:47197670-47197689 | None:intergenic | 25.0% |
| !! | CCATGAAGAATATGATTTTT+GGG | - | chr7_4:47197671-47197690 | None:intergenic | 25.0% |
| !! | ACCATGAAGAATATGATTTT+TGG | - | chr7_4:47197672-47197691 | None:intergenic | 25.0% |
| !!! | GGAAATGCTTTTTTAAACAA+AGG | - | chr7_4:47197731-47197750 | None:intergenic | 25.0% |
| ! | TGACAAAGAGAATAAAAACT+CGG | - | chr7_4:47198219-47198238 | None:intergenic | 25.0% |
| ! | ATTTGTCCAACTTAGATATT+TGG | + | chr7_4:47198250-47198269 | Msa1158080:three_prime_UTR | 25.0% |
| ! | TAATTCTTGTGATGATAGTA+TGG | - | chr7_4:47198338-47198357 | None:intergenic | 25.0% |
| ! | CTTATTCAACAAAAATCACA+TGG | - | chr7_4:47198369-47198388 | None:intergenic | 25.0% |
| AACGCGAATTTGAAAACAAA+AGG | - | chr7_4:47194220-47194239 | None:intergenic | 30.0% | |
| AAATGCTAATGTCATTAAGC+TGG | + | chr7_4:47194339-47194358 | Msa1158080:intron | 30.0% | |
| AACTCTTTCAGTAATGTAGA+GGG | - | chr7_4:47194715-47194734 | None:intergenic | 30.0% | |
| TTAGTTATGGTTAGAGAGAT+AGG | + | chr7_4:47194846-47194865 | Msa1158080:intron | 30.0% | |
| TAATTGATTGAGAGAGAGAT+AGG | + | chr7_4:47195095-47195114 | Msa1158080:intron | 30.0% | |
| ACAATCTCATGATTTGATGT+TGG | + | chr7_4:47195173-47195192 | Msa1158080:intron | 30.0% | |
| ! | TTTTTATAACGTAAGGCCTA+TGG | + | chr7_4:47195295-47195314 | Msa1158080:intron | 30.0% |
| ! | TTTTATAACGTAAGGCCTAT+GGG | + | chr7_4:47195296-47195315 | Msa1158080:intron | 30.0% |
| CATATGGTAAAAAAGTTCAC+AGG | - | chr7_4:47195358-47195377 | None:intergenic | 30.0% | |
| !!! | CTGTGAACTTTTTTACCATA+TGG | + | chr7_4:47195356-47195375 | Msa1158080:intron | 30.0% |
| AACTAGTTAGATAGTTGACA+TGG | - | chr7_4:47195648-47195667 | None:intergenic | 30.0% | |
| AAACCGTACTATATATGTCA+AGG | - | chr7_4:47196011-47196030 | None:intergenic | 30.0% | |
| ! | CTATTTCTTCCAGATGTATT+AGG | + | chr7_4:47196229-47196248 | Msa1158080:intron | 30.0% |
| TCCTATTGTAAGTTATGTAG+TGG | + | chr7_4:47196261-47196280 | Msa1158080:intron | 30.0% | |
| ! | ATTTGACTGTGTAGAAGTAT+CGG | + | chr7_4:47196326-47196345 | Msa1158080:intron | 30.0% |
| TATCAGTATCATGATGAATG+GGG | - | chr7_4:47196474-47196493 | None:intergenic | 30.0% | |
| ! | TCATCATGATACTGATAATG+TGG | + | chr7_4:47196477-47196496 | Msa1158080:intron | 30.0% |
| AAAATGGGATGATAAAGGTT+TGG | + | chr7_4:47196935-47196954 | Msa1158080:CDS | 30.0% | |
| GACATTGATGAAATTATTGG+AGG | - | chr7_4:47197105-47197124 | None:intergenic | 30.0% | |
| CAAACCAATTTAAATGTTGC+TGG | - | chr7_4:47197433-47197452 | None:intergenic | 30.0% | |
| CAGCAACATTTAAATTGGTT+TGG | + | chr7_4:47197431-47197450 | Msa1158080:intron | 30.0% | |
| CCCAAAAATCATATTCTTCA+TGG | + | chr7_4:47197668-47197687 | Msa1158080:intron | 30.0% | |
| AGATGATTGAAGAAAACAGA+TGG | + | chr7_4:47197780-47197799 | Msa1158080:intron | 30.0% | |
| TGAAACACTAGAGAATAATG+AGG | + | chr7_4:47197887-47197906 | Msa1158080:CDS | 30.0% | |
| ! | CAAGCAACATATTTAGTTTC+TGG | + | chr7_4:47198108-47198127 | Msa1158080:three_prime_UTR | 30.0% |
| ACAAAGAGAATAAAAACTCG+GGG | - | chr7_4:47198217-47198236 | None:intergenic | 30.0% | |
| GACAAAGAGAATAAAAACTC+GGG | - | chr7_4:47198218-47198237 | None:intergenic | 30.0% | |
| TAAATTGACCACATTACAAG+AGG | - | chr7_4:47198285-47198304 | None:intergenic | 30.0% | |
| GTTGAGTTAGAAAGTGAAGA+TGG | - | chr7_4:47194061-47194080 | None:intergenic | 35.0% | |
| TGAAGGGAAGATGTGAAATT+GGG | - | chr7_4:47194120-47194139 | None:intergenic | 35.0% | |
| ATGAAGGGAAGATGTGAAAT+TGG | - | chr7_4:47194121-47194140 | None:intergenic | 35.0% | |
| TCATTAAGCTGGATTCTTCT+TGG | + | chr7_4:47194350-47194369 | Msa1158080:intron | 35.0% | |
| ATCGCAGAAAATAGCAGTTT+AGG | + | chr7_4:47194521-47194540 | Msa1158080:intron | 35.0% | |
| ! | ATATTGTGAAGTACCAGCTA+TGG | - | chr7_4:47194580-47194599 | None:intergenic | 35.0% |
| TGTACTAAATAGCGTATCAC+CGG | + | chr7_4:47194602-47194621 | Msa1158080:intron | 35.0% | |
| GCGATATAGAGCTATAATTC+CGG | - | chr7_4:47194624-47194643 | None:intergenic | 35.0% | |
| ! | TCGCCACTATTTTACAACAT+TGG | + | chr7_4:47194640-47194659 | Msa1158080:intron | 35.0% |
| ACTCTTTCAGTAATGTAGAG+GGG | - | chr7_4:47194714-47194733 | None:intergenic | 35.0% | |
| CAACTCTTTCAGTAATGTAG+AGG | - | chr7_4:47194716-47194735 | None:intergenic | 35.0% | |
| CCATAACTAACTAACACTGT+GGG | - | chr7_4:47194836-47194855 | None:intergenic | 35.0% | |
| ACCATAACTAACTAACACTG+TGG | - | chr7_4:47194837-47194856 | None:intergenic | 35.0% | |
| ACCAAAGCTCTTTGATCTAA+GGG | - | chr7_4:47194947-47194966 | None:intergenic | 35.0% | |
| !!! | ACTTGGGTGACATAGTTTTT+TGG | + | chr7_4:47194999-47195018 | Msa1158080:intron | 35.0% |
| TCAATAAACGGTGTGCATTA+AGG | - | chr7_4:47195326-47195345 | None:intergenic | 35.0% | |
| AGGGACAAAAGGTCAATAAA+CGG | - | chr7_4:47195338-47195357 | None:intergenic | 35.0% | |
| AAAAAGTTCACAGGGACAAA+AGG | - | chr7_4:47195349-47195368 | None:intergenic | 35.0% | |
| !! | TAAGAGGCGTTTCAATTCAA+TGG | + | chr7_4:47195476-47195495 | Msa1158080:exon | 35.0% |
| AGTTGACATGGAAATACCTT+GGG | - | chr7_4:47195636-47195655 | None:intergenic | 35.0% | |
| TAGTTGACATGGAAATACCT+TGG | - | chr7_4:47195637-47195656 | None:intergenic | 35.0% | |
| TTAGCACGTTATTCAGACAA+CGG | + | chr7_4:47195702-47195721 | Msa1158080:intron | 35.0% | |
| AGAGCCCTTGAGAAAATAAA+GGG | + | chr7_4:47195731-47195750 | Msa1158080:intron | 35.0% | |
| !!! | ACGTCCCTTTATTTTCTCAA+GGG | - | chr7_4:47195738-47195757 | None:intergenic | 35.0% |
| TAAGGAGTTGTCACTGTAAT+TGG | - | chr7_4:47195929-47195948 | None:intergenic | 35.0% | |
| ATTACAGTGACAACTCCTTA+CGG | + | chr7_4:47195929-47195948 | Msa1158080:intron | 35.0% | |
| CGTCCTTGACATATATAGTA+CGG | + | chr7_4:47196005-47196024 | Msa1158080:intron | 35.0% | |
| AATCCTAGACCTAATACATC+TGG | - | chr7_4:47196241-47196260 | None:intergenic | 35.0% | |
| GCCACTACATAACTTACAAT+AGG | - | chr7_4:47196265-47196284 | None:intergenic | 35.0% | |
| !! | TTTGACTGTGTAGAAGTATC+GGG | + | chr7_4:47196327-47196346 | Msa1158080:intron | 35.0% |
| TAACAACTAAAACAGCACCA+AGG | - | chr7_4:47196599-47196618 | None:intergenic | 35.0% | |
| CTTGATGCCACAAAACTAAA+TGG | - | chr7_4:47196693-47196712 | None:intergenic | 35.0% | |
| TGATTGCTTATGAAATGCCA+TGG | + | chr7_4:47196795-47196814 | Msa1158080:intron | 35.0% | |
| GAATGTAACAACAAATGCCA+TGG | - | chr7_4:47196815-47196834 | None:intergenic | 35.0% | |
| ! | GTTACATTCCTTCTCTCTTT+TGG | + | chr7_4:47196826-47196845 | Msa1158080:intron | 35.0% |
| AAAAGACACCAAAAGAGAGA+AGG | - | chr7_4:47196837-47196856 | None:intergenic | 35.0% | |
| GGTGTAAAATGGGATGATAA+AGG | + | chr7_4:47196930-47196949 | Msa1158080:CDS | 35.0% | |
| CACAATCAAGAAAGACATCA+TGG | - | chr7_4:47197127-47197146 | None:intergenic | 35.0% | |
| ! | CAAGAGCTTTTACAGAATCA+CGG | - | chr7_4:47197151-47197170 | None:intergenic | 35.0% |
| TCTTTCAACAAGTCAAAGAC+TGG | - | chr7_4:47197345-47197364 | None:intergenic | 35.0% | |
| !! | TGACTTGTTGAAAGAAGAAG+AGG | + | chr7_4:47197350-47197369 | Msa1158080:CDS | 35.0% |
| AAGGCCAGCAACATTTAAAT+TGG | + | chr7_4:47197426-47197445 | Msa1158080:intron | 35.0% | |
| ! | ACAGGTTGAAGGAAACAAAT+TGG | + | chr7_4:47197462-47197481 | Msa1158080:intron | 35.0% |
| !!! | GATTTTTGGGGTCGAAAAAA+GGG | - | chr7_4:47197658-47197677 | None:intergenic | 35.0% |
| !!! | TGATTTTTGGGGTCGAAAAA+AGG | - | chr7_4:47197659-47197678 | None:intergenic | 35.0% |
| AAGGCAACTTTATAGCAACA+AGG | - | chr7_4:47197712-47197731 | None:intergenic | 35.0% | |
| ! | CAAAGTAGAAGAAGTTTTGC+AGG | + | chr7_4:47197983-47198002 | Msa1158080:CDS | 35.0% |
| ! | ATTTTCCAAGTCTGGTATTG+AGG | + | chr7_4:47198019-47198038 | Msa1158080:CDS | 35.0% |
| ACGAGTTGTTACCATGAATA+GGG | + | chr7_4:47198152-47198171 | Msa1158080:three_prime_UTR | 35.0% | |
| CGAGTTCCAAATATCTAAGT+TGG | - | chr7_4:47198259-47198278 | None:intergenic | 35.0% | |
| AAGTGAAGATGGAGAAAGAG+AGG | - | chr7_4:47194050-47194069 | None:intergenic | 40.0% | |
| GATGTGAAATTGGGGTTGTA+AGG | - | chr7_4:47194111-47194130 | None:intergenic | 40.0% | |
| GAAGGGAAGATGTGAAATTG+GGG | - | chr7_4:47194119-47194138 | None:intergenic | 40.0% | |
| GAATGAATAGCAGCGATGAA+GGG | - | chr7_4:47194136-47194155 | None:intergenic | 40.0% | |
| TGAATGAATAGCAGCGATGA+AGG | - | chr7_4:47194137-47194156 | None:intergenic | 40.0% | |
| TTCATCGCTGCTATTCATTC+AGG | + | chr7_4:47194136-47194155 | Msa1158080:five_prime_UTR | 40.0% | |
| TGTTGAGGACAACTATTGTC+AGG | + | chr7_4:47194441-47194460 | Msa1158080:intron | 40.0% | |
| CTCTTTCAGTAATGTAGAGG+GGG | - | chr7_4:47194713-47194732 | None:intergenic | 40.0% | |
| TTTGTCGGCATCATACTGTT+TGG | + | chr7_4:47194807-47194826 | Msa1158080:intron | 40.0% | |
| CCCACAGTGTTAGTTAGTTA+TGG | + | chr7_4:47194833-47194852 | Msa1158080:intron | 40.0% | |
| TCCCTTAGATCAAAGAGCTT+TGG | + | chr7_4:47194943-47194962 | Msa1158080:intron | 40.0% | |
| GACCAAAGCTCTTTGATCTA+AGG | - | chr7_4:47194948-47194967 | None:intergenic | 40.0% | |
| ! | TGTAGATAGCCGATTTCACT+TGG | + | chr7_4:47194982-47195001 | Msa1158080:intron | 40.0% |
| ! | GTAGATAGCCGATTTCACTT+GGG | + | chr7_4:47194983-47195002 | Msa1158080:intron | 40.0% |
| CTATGTCACCCAAGTGAAAT+CGG | - | chr7_4:47194994-47195013 | None:intergenic | 40.0% | |
| ! | CACTTAGGTGACATAGCTTT+TGG | - | chr7_4:47195131-47195150 | None:intergenic | 40.0% |
| AGTTTGATTGACCCATAGAG+TGG | + | chr7_4:47195247-47195266 | Msa1158080:intron | 40.0% | |
| GTTTGATTGACCCATAGAGT+GGG | + | chr7_4:47195248-47195267 | Msa1158080:intron | 40.0% | |
| ! | ATATGGGCTACTGTCAAGAA+GGG | + | chr7_4:47195373-47195392 | Msa1158080:intron | 40.0% |
| TTTACAGTTGCACAGTCAAG+TGG | + | chr7_4:47195450-47195469 | Msa1158080:intron | 40.0% | |
| AAAACGAGAGATTGCACTTC+TGG | - | chr7_4:47195542-47195561 | None:intergenic | 40.0% | |
| AGAAGCAAAAGCTAAGTGGT+TGG | - | chr7_4:47195598-47195617 | None:intergenic | 40.0% | |
| GCATAGAAGCAAAAGCTAAG+TGG | - | chr7_4:47195602-47195621 | None:intergenic | 40.0% | |
| GTTGACATGGAAATACCTTG+GGG | - | chr7_4:47195635-47195654 | None:intergenic | 40.0% | |
| ! | ATTTTCTCAAGGGCTCTCAT+TGG | - | chr7_4:47195728-47195747 | None:intergenic | 40.0% |
| GAGAGCCCTTGAGAAAATAA+AGG | + | chr7_4:47195730-47195749 | Msa1158080:intron | 40.0% | |
| !!! | CACGTCCCTTTATTTTCTCA+AGG | - | chr7_4:47195739-47195758 | None:intergenic | 40.0% |
| TGAGAAAATAAAGGGACGTG+TGG | + | chr7_4:47195739-47195758 | Msa1158080:intron | 40.0% | |
| AACTCCTTACGGTGACATTT+GGG | + | chr7_4:47195940-47195959 | Msa1158080:intron | 40.0% | |
| AGATAGGAACGTCTATAAGC+AGG | - | chr7_4:47196129-47196148 | None:intergenic | 40.0% | |
| ACACCAAAGCATGCTAACAT+AGG | + | chr7_4:47196188-47196207 | Msa1158080:intron | 40.0% | |
| CACCAAAGCATGCTAACATA+GGG | + | chr7_4:47196189-47196208 | Msa1158080:intron | 40.0% | |
| ACCAAAGCATGCTAACATAG+GGG | + | chr7_4:47196190-47196209 | Msa1158080:intron | 40.0% | |
| CTTCCAGATGTATTAGGTCT+AGG | + | chr7_4:47196235-47196254 | Msa1158080:intron | 40.0% | |
| AAGGCTCAGAAGATACTAGA+AGG | - | chr7_4:47196580-47196599 | None:intergenic | 40.0% | |
| TTCTAGTATCTTCTGAGCCT+TGG | + | chr7_4:47196579-47196598 | Msa1158080:intron | 40.0% | |
| ATACAAACTGGACTTGCATG+AGG | - | chr7_4:47196649-47196668 | None:intergenic | 40.0% | |
| ACTGTTGGACGGTGTAAAAT+GGG | + | chr7_4:47196920-47196939 | Msa1158080:CDS | 40.0% | |
| ATAGCTCAGAATGTTGACAC+AGG | + | chr7_4:47196966-47196985 | Msa1158080:CDS | 40.0% | |
| TAGCTCAGAATGTTGACACA+GGG | + | chr7_4:47196967-47196986 | Msa1158080:CDS | 40.0% | |
| AGAAGATATGGTTGTAGCCA+CGG | - | chr7_4:47197027-47197046 | None:intergenic | 40.0% | |
| TGGCTACAACCATATCTTCT+CGG | + | chr7_4:47197027-47197046 | Msa1158080:CDS | 40.0% | |
| TACAACCATATCTTCTCGGA+AGG | + | chr7_4:47197031-47197050 | Msa1158080:CDS | 40.0% | |
| ATTATTGGAGGTCTCTCCTT+TGG | - | chr7_4:47197093-47197112 | None:intergenic | 40.0% | |
| ATATACCTTGGGAAACCTGA+TGG | + | chr7_4:47197279-47197298 | Msa1158080:CDS | 40.0% | |
| TATACCTTGGGAAACCTGAT+GGG | + | chr7_4:47197280-47197299 | Msa1158080:CDS | 40.0% | |
| ! | TCCTGTTTTCCTGTAGAGAA+AGG | + | chr7_4:47197407-47197426 | Msa1158080:intron | 40.0% |
| !! | ATTGGTTTGGTATCTGCTAC+AGG | + | chr7_4:47197444-47197463 | Msa1158080:intron | 40.0% |
| GCAGAGGTAGTAGAAGAAAA+CGG | + | chr7_4:47197532-47197551 | Msa1158080:CDS | 40.0% | |
| AAGAAAACGGAAAGCCTTCA+TGG | + | chr7_4:47197545-47197564 | Msa1158080:CDS | 40.0% | |
| AATAACCGCTTTGTCCATGA+AGG | - | chr7_4:47197562-47197581 | None:intergenic | 40.0% | |
| !! | AGTTGCTGTGCTCTAAAATC+AGG | + | chr7_4:47197593-47197612 | Msa1158080:CDS | 40.0% |
| !! | CTGTGCTCTAAAATCAGGTT+GGG | + | chr7_4:47197598-47197617 | Msa1158080:intron | 40.0% |
| TCTTTCTACTTGCAGAGAAG+AGG | + | chr7_4:47197851-47197870 | Msa1158080:intron | 40.0% | |
| TGATGTACTCTATCATGCCA+TGG | + | chr7_4:47197938-47197957 | Msa1158080:CDS | 40.0% | |
| ! | AAGAAGTTTTGCAGGTTCTG+AGG | + | chr7_4:47197991-47198010 | Msa1158080:CDS | 40.0% |
| ! | CTTTTCCTCAATACCAGACT+TGG | - | chr7_4:47198027-47198046 | None:intergenic | 40.0% |
| !! | TCATTGTTCCACCGATTTCT+GGG | - | chr7_4:47198063-47198082 | None:intergenic | 40.0% |
| !! | TTCATTGTTCCACCGATTTC+TGG | - | chr7_4:47198064-47198083 | None:intergenic | 40.0% |
| AACAACTCGTCTTGTACATC+TGG | - | chr7_4:47198142-47198161 | None:intergenic | 40.0% | |
| GACGAGTTGTTACCATGAAT+AGG | + | chr7_4:47198151-47198170 | Msa1158080:three_prime_UTR | 40.0% | |
| CGAGTTGTTACCATGAATAG+GGG | + | chr7_4:47198153-47198172 | Msa1158080:three_prime_UTR | 40.0% | |
| ACTCGTATCCTCTTGTAATG+TGG | + | chr7_4:47198274-47198293 | Msa1158080:three_prime_UTR | 40.0% | |
| TGGCGTGCAAGTCATAAATG+TGG | - | chr7_4:47194247-47194266 | None:intergenic | 45.0% | |
| GCTATAGCACTGTTGTGTAG+CGG | - | chr7_4:47194553-47194572 | None:intergenic | 45.0% | |
| ! | TTGTGAAGTACCAGCTATGG+TGG | - | chr7_4:47194577-47194596 | None:intergenic | 45.0% |
| TAAACGGTGTGCATTAAGGC+TGG | - | chr7_4:47195322-47195341 | None:intergenic | 45.0% | |
| CTTCTTGACAGTAGCCCATA+TGG | - | chr7_4:47195374-47195393 | None:intergenic | 45.0% | |
| ! | CATATGGGCTACTGTCAAGA+AGG | + | chr7_4:47195372-47195391 | Msa1158080:intron | 45.0% |
| GGATTGAAGCATGTGAACGT+TGG | - | chr7_4:47195508-47195527 | None:intergenic | 45.0% | |
| ! | ATTGCACTTCTGGAAACCTC+TGG | - | chr7_4:47195532-47195551 | None:intergenic | 45.0% |
| ! | AATCTCTCGTTTTCCAGCCA+TGG | + | chr7_4:47195549-47195568 | Msa1158080:CDS | 45.0% |
| CAACTCCTTACGGTGACATT+TGG | + | chr7_4:47195939-47195958 | Msa1158080:intron | 45.0% | |
| AACGTCTATAAGCAGGATGG+TGG | - | chr7_4:47196122-47196141 | None:intergenic | 45.0% | |
| AGGAACGTCTATAAGCAGGA+TGG | - | chr7_4:47196125-47196144 | None:intergenic | 45.0% | |
| TCCCCTATGTTAGCATGCTT+TGG | - | chr7_4:47196194-47196213 | None:intergenic | 45.0% | |
| !!! | GGGGCAACCATTTAGTTTTG+TGG | + | chr7_4:47196683-47196702 | Msa1158080:intron | 45.0% |
| TTGTCAGGTAGACTCACTGT+TGG | + | chr7_4:47196905-47196924 | Msa1158080:intron | 45.0% | |
| CACTGTTGGACGGTGTAAAA+TGG | + | chr7_4:47196919-47196938 | Msa1158080:CDS | 45.0% | |
| GGATGATAAAGGTTTGGCTG+TGG | + | chr7_4:47196941-47196960 | Msa1158080:CDS | 45.0% | |
| AGCTCAGAATGTTGACACAG+GGG | + | chr7_4:47196968-47196987 | Msa1158080:CDS | 45.0% | |
| GGAAGGCCACATTCTATAGT+CGG | + | chr7_4:47197048-47197067 | Msa1158080:CDS | 45.0% | |
| CCACATTCTATAGTCGGTCA+CGG | + | chr7_4:47197054-47197073 | Msa1158080:CDS | 45.0% | |
| GCCTTTCTCTACAGGAAAAC+AGG | - | chr7_4:47197411-47197430 | None:intergenic | 45.0% | |
| ! | TGGTATCTGCTACAGGTTGA+AGG | + | chr7_4:47197451-47197470 | Msa1158080:intron | 45.0% |
| GAAAGCCTTCATGGACAAAG+CGG | + | chr7_4:47197554-47197573 | Msa1158080:CDS | 45.0% | |
| !! | GCTGTGCTCTAAAATCAGGT+TGG | + | chr7_4:47197597-47197616 | Msa1158080:intron | 45.0% |
| ! | CTATCATGCCATGGTTCTGT+TGG | + | chr7_4:47197947-47197966 | Msa1158080:CDS | 45.0% |
| CTTTAGTGCCAACAGAACCA+TGG | - | chr7_4:47197958-47197977 | None:intergenic | 45.0% | |
| ! | CATGGTTCTGTTGGCACTAA+AGG | + | chr7_4:47197956-47197975 | Msa1158080:CDS | 45.0% |
| AAGTCGCACAACCCAGAAAT+CGG | + | chr7_4:47198049-47198068 | Msa1158080:CDS | 45.0% | |
| GCTAGAGTTACCCCTATTCA+TGG | - | chr7_4:47198166-47198185 | None:intergenic | 45.0% | |
| !!! | TATAAAAAAACATTTTAAAT+GGG | - | chr7_4:47195283-47195302 | None:intergenic | 5.0% |
| !!! | TTATAAAAAAACATTTTAAA+TGG | - | chr7_4:47195284-47195303 | None:intergenic | 5.0% |
| !! | ATAGTTATTATAATATTATT+TGG | - | chr7_4:47198394-47198413 | None:intergenic | 5.0% |
| !! | ATTATAATAACTATTTATTA+TGG | + | chr7_4:47198400-47198419 | Msa1158080:three_prime_UTR | 5.0% |
| ! | ATGGGAGTGAAAGTGCAGCA+AGG | + | chr7_4:47194887-47194906 | Msa1158080:intron | 50.0% |
| ! | TGGGAGTGAAAGTGCAGCAA+GGG | + | chr7_4:47194888-47194907 | Msa1158080:intron | 50.0% |
| ! | TGTCACCTAAGTGCTACTCG+TGG | + | chr7_4:47195138-47195157 | Msa1158080:intron | 50.0% |
| GCTATCCACGAGTAGCACTT+AGG | - | chr7_4:47195146-47195165 | None:intergenic | 50.0% | |
| ! | ATTGACCCATAGAGTGGGCT+AGG | + | chr7_4:47195253-47195272 | Msa1158080:intron | 50.0% |
| GATTGCCTAGCCCACTCTAT+GGG | - | chr7_4:47195261-47195280 | None:intergenic | 50.0% | |
| !! | CACAGTCAAGTGGCTCTAAG+AGG | + | chr7_4:47195460-47195479 | Msa1158080:five_prime_UTR | 50.0% |
| TTGGTCCTGTAACCGCATCT+GGG | - | chr7_4:47195579-47195598 | None:intergenic | 50.0% | |
| TATGCACACATCTGACCCCA+AGG | + | chr7_4:47195617-47195636 | Msa1158080:CDS | 50.0% | |
| CAAGCCCAAATGTCACCGTA+AGG | - | chr7_4:47195947-47195966 | None:intergenic | 50.0% | |
| !! | GATGGTGGAGGTCACATGTT+AGG | - | chr7_4:47196107-47196126 | None:intergenic | 50.0% |
| ! | GTCTATAAGCAGGATGGTGG+AGG | - | chr7_4:47196119-47196138 | None:intergenic | 50.0% |
| CAGGTAGACTCACTGTTGGA+CGG | + | chr7_4:47196909-47196928 | Msa1158080:intron | 50.0% | |
| ACAGGGGCAATACTGATGCA+AGG | + | chr7_4:47196984-47197003 | Msa1158080:CDS | 50.0% | |
| CTTTGCAAACAGAGAAGCCG+TGG | + | chr7_4:47197007-47197026 | Msa1158080:CDS | 50.0% | |
| TGTGGCCTTCCGAGAAGATA+TGG | - | chr7_4:47197039-47197058 | None:intergenic | 50.0% | |
| CCGTGACCGACTATAGAATG+TGG | - | chr7_4:47197057-47197076 | None:intergenic | 50.0% | |
| !! | TGTTGCTGGCCTTTCTCTAC+AGG | - | chr7_4:47197419-47197438 | None:intergenic | 50.0% |
| GTCAACAATATCCCAGCGCA+AGG | + | chr7_4:47197510-47197529 | Msa1158080:CDS | 50.0% | |
| ! | AGGCAGCGATTTTCCAAGTC+TGG | + | chr7_4:47198011-47198030 | Msa1158080:CDS | 50.0% |
| TGCTATAGCGCCACCATAGC+TGG | + | chr7_4:47194564-47194583 | Msa1158080:intron | 55.0% | |
| ! | GAAAGTGCAGCAAGGGCAAC+TGG | + | chr7_4:47194895-47194914 | Msa1158080:intron | 55.0% |
| GGATTGCCTAGCCCACTCTA+TGG | - | chr7_4:47195262-47195281 | None:intergenic | 55.0% | |
| ! | GTGCATTAAGGCTGGCCCAT+AGG | - | chr7_4:47195314-47195333 | None:intergenic | 55.0% |
| TGGGCTACTGTCAAGAAGGG+TGG | + | chr7_4:47195376-47195395 | Msa1158080:intron | 55.0% | |
| GGGTGGCTCAGCTCATATTG+AGG | + | chr7_4:47195393-47195412 | Msa1158080:intron | 55.0% | |
| CACATGCTTCAATCCGCCAG+AGG | + | chr7_4:47195513-47195532 | Msa1158080:CDS | 55.0% | |
| ! | GCACTTCTGGAAACCTCTGG+CGG | - | chr7_4:47195529-47195548 | None:intergenic | 55.0% |
| AGCCATGGCTATCCCAGATG+CGG | + | chr7_4:47195564-47195583 | Msa1158080:CDS | 55.0% | |
| ! | AACCGCATCTGGGATAGCCA+TGG | - | chr7_4:47195569-47195588 | None:intergenic | 55.0% |
| GCTATCCCAGATGCGGTTAC+AGG | + | chr7_4:47195571-47195590 | Msa1158080:CDS | 55.0% | |
| GTTGGTCCTGTAACCGCATC+TGG | - | chr7_4:47195580-47195599 | None:intergenic | 55.0% | |
| CGGTCATCGTTGTGGACCAA+AGG | + | chr7_4:47197074-47197093 | Msa1158080:CDS | 55.0% | |
| TAGGCCCATCAGGTTTCCCA+AGG | - | chr7_4:47197287-47197306 | None:intergenic | 55.0% | |
| ! | AGCATGTTTCTGCCCCTGTG+TGG | - | chr7_4:47197314-47197333 | None:intergenic | 55.0% |
| AATATCCCAGCGCAAGGCAG+AGG | + | chr7_4:47197516-47197535 | Msa1158080:CDS | 55.0% | |
| TACTACCTCTGCCTTGCGCT+GGG | - | chr7_4:47197524-47197543 | None:intergenic | 55.0% | |
| GTCACGCACTGCTTCAGAGA+TGG | + | chr7_4:47197914-47197933 | Msa1158080:CDS | 55.0% | |
| TCGCACAACCCAGAAATCGG+TGG | + | chr7_4:47198052-47198071 | Msa1158080:CDS | 55.0% | |
| ! | GCATCTGGGATAGCCATGGC+TGG | - | chr7_4:47195565-47195584 | None:intergenic | 60.0% |
| GTCGGTCACGGTCATCGTTG+TGG | + | chr7_4:47197066-47197085 | Msa1158080:CDS | 60.0% | |
| ATGGGCCTACCTGCCACACA+GGG | + | chr7_4:47197298-47197317 | Msa1158080:CDS | 60.0% | |
| ! | TGTTTCTGCCCCTGTGTGGC+AGG | - | chr7_4:47197310-47197329 | None:intergenic | 60.0% |
| CTACTACCTCTGCCTTGCGC+TGG | - | chr7_4:47197525-47197544 | None:intergenic | 60.0% | |
| GTGTGGCAGGTAGGCCCATC+AGG | - | chr7_4:47197297-47197316 | None:intergenic | 65.0% | |
| GATGGGCCTACCTGCCACAC+AGG | + | chr7_4:47197297-47197316 | Msa1158080:CDS | 65.0% | |
| TGGGCCTACCTGCCACACAG+GGG | + | chr7_4:47197299-47197318 | Msa1158080:CDS | 65.0% | |
| TCTGCCCCTGTGTGGCAGGT+AGG | - | chr7_4:47197306-47197325 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 47194029 | 47198432 | 47194029 | ID=Msa1158080;Name=Msa1158080 |
| chr7_4 | mRNA | 47194029 | 47198432 | 47194029 | ID=Msa1158080-mRNA-1;Parent=Msa1158080;Name=Msa1158080-mRNA-1;_AED=0.08;_eAED=0.08;_QI=167|0.8|0.83|1|0.8|0.66|6|350|288 |
| chr7_4 | exon | 47194029 | 47194157 | 47194029 | ID=Msa1158080-mRNA-1:exon:12542;Parent=Msa1158080-mRNA-1 |
| chr7_4 | exon | 47195457 | 47195638 | 47195457 | ID=Msa1158080-mRNA-1:exon:12543;Parent=Msa1158080-mRNA-1 |
| chr7_4 | exon | 47196912 | 47197172 | 47196912 | ID=Msa1158080-mRNA-1:exon:12544;Parent=Msa1158080-mRNA-1 |
| chr7_4 | exon | 47197276 | 47197371 | 47197276 | ID=Msa1158080-mRNA-1:exon:12545;Parent=Msa1158080-mRNA-1 |
| chr7_4 | exon | 47197466 | 47197614 | 47197466 | ID=Msa1158080-mRNA-1:exon:12546;Parent=Msa1158080-mRNA-1 |
| chr7_4 | exon | 47197866 | 47198432 | 47197866 | ID=Msa1158080-mRNA-1:exon:12547;Parent=Msa1158080-mRNA-1 |
| chr7_4 | five_prime_UTR | 47194029 | 47194157 | 47194029 | ID=Msa1158080-mRNA-1:five_prime_utr;Parent=Msa1158080-mRNA-1 |
| chr7_4 | five_prime_UTR | 47195457 | 47195494 | 47195457 | ID=Msa1158080-mRNA-1:five_prime_utr;Parent=Msa1158080-mRNA-1 |
| chr7_4 | CDS | 47195495 | 47195638 | 47195495 | ID=Msa1158080-mRNA-1:cds;Parent=Msa1158080-mRNA-1 |
| chr7_4 | CDS | 47196912 | 47197172 | 47196912 | ID=Msa1158080-mRNA-1:cds;Parent=Msa1158080-mRNA-1 |
| chr7_4 | CDS | 47197276 | 47197371 | 47197276 | ID=Msa1158080-mRNA-1:cds;Parent=Msa1158080-mRNA-1 |
| chr7_4 | CDS | 47197466 | 47197614 | 47197466 | ID=Msa1158080-mRNA-1:cds;Parent=Msa1158080-mRNA-1 |
| chr7_4 | CDS | 47197866 | 47198082 | 47197866 | ID=Msa1158080-mRNA-1:cds;Parent=Msa1158080-mRNA-1 |
| chr7_4 | three_prime_UTR | 47198083 | 47198432 | 47198083 | ID=Msa1158080-mRNA-1:three_prime_utr;Parent=Msa1158080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
