Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0484780 | Msa1161820 | 0.804617 | 1.982160e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 12 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGCATCTACTGTAGTTT+TGG | 0.234790 | 7_4:+52132384 | None:intergenic |
| TTTGGTTCATAAATTTAAAA+AGG | 0.240416 | 7_4:-52132012 | Msa1161820:CDS |
| TCTATTTAGAGACTTCAATT+TGG | 0.337026 | 7_4:-52132030 | Msa1161820:CDS |
| TTGGTTTCTTGATAACCTTA+TGG | 0.382906 | 7_4:+52132101 | None:intergenic |
| TGGTGTTGTAGGAATACTTC+AGG | 0.395140 | 7_4:-52132356 | Msa1161820:intron |
| GCAGACAAGATTGGTGTTGT+AGG | 0.430710 | 7_4:-52132367 | Msa1161820:CDS |
| AAAATACCATATAAAATGCT+TGG | 0.473414 | 7_4:+52132082 | None:intergenic |
| TGAAAATTCGACCGTCCATA+AGG | 0.481648 | 7_4:-52132116 | Msa1161820:CDS |
| TATGTTTATTTCTTCATGAA+GGG | 0.513371 | 7_4:-52133814 | None:intergenic |
| ACAGTAGATGCAGACAAGAT+TGG | 0.524122 | 7_4:-52132376 | Msa1161820:CDS |
| GAAGTCTCTAAATAGATCAA+AGG | 0.547837 | 7_4:+52132037 | None:intergenic |
| TTTCTTGATAACCTTATGGA+CGG | 0.587233 | 7_4:+52132105 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAAAAAAAGAATCTTA+AGG | - | chr7_4:52132338-52132357 | Msa1161820:intron | 15.0% |
| !!! | ATTTACTTAGAATTTAAGTT+TGG | - | chr7_4:52132752-52132771 | Msa1161820:intron | 15.0% |
| !!! | AATTTTAGGTAAATAAAACA+TGG | + | chr7_4:52133130-52133149 | None:intergenic | 15.0% |
| !!! | TTCTCTAATTTAATTTTTCT+AGG | - | chr7_4:52133719-52133738 | Msa1161820:intron | 15.0% |
| !!! | TTTGGTTCATAAATTTAAAA+AGG | - | chr7_4:52133767-52133786 | Msa1161820:intron | 15.0% |
| !! | TCAAAAAAAAAAGAATCTTA+AGG | - | chr7_4:52132338-52132357 | Msa1161820:intron | 15.0% |
| !!! | ATTTACTTAGAATTTAAGTT+TGG | - | chr7_4:52132752-52132771 | Msa1161820:intron | 15.0% |
| !!! | AATTTTAGGTAAATAAAACA+TGG | + | chr7_4:52133130-52133149 | None:intergenic | 15.0% |
| !!! | TTCTCTAATTTAATTTTTCT+AGG | - | chr7_4:52133719-52133738 | Msa1161820:intron | 15.0% |
| !!! | TTTGGTTCATAAATTTAAAA+AGG | - | chr7_4:52133767-52133786 | Msa1161820:intron | 15.0% |
| !!! | ACACAATAAAAATAGTTTGT+GGG | + | chr7_4:52132184-52132203 | None:intergenic | 20.0% |
| !! | AACACAATAAAAATAGTTTG+TGG | + | chr7_4:52132185-52132204 | None:intergenic | 20.0% |
| !! | ATTATACCTTAAAATTCTAG+GGG | + | chr7_4:52132315-52132334 | None:intergenic | 20.0% |
| !! | CATTATACCTTAAAATTCTA+GGG | + | chr7_4:52132316-52132335 | None:intergenic | 20.0% |
| !! | ACATTATACCTTAAAATTCT+AGG | + | chr7_4:52132317-52132336 | None:intergenic | 20.0% |
| !! | AAAAAGAATCTTAAGGTATA+AGG | - | chr7_4:52132345-52132364 | Msa1161820:intron | 20.0% |
| !! | CATAATTCTAACAAATATCA+CGG | - | chr7_4:52132388-52132407 | Msa1161820:CDS | 20.0% |
| !! | ATAATTCTAACAAATATCAC+GGG | - | chr7_4:52132389-52132408 | Msa1161820:CDS | 20.0% |
| !! | CTATCAAAGACTATTAATAT+GGG | + | chr7_4:52132492-52132511 | None:intergenic | 20.0% |
| !! | TACCTAAAATTTAATGATCA+TGG | - | chr7_4:52133139-52133158 | Msa1161820:intron | 20.0% |
| !!! | TTCCATGATCATTAAATTTT+AGG | + | chr7_4:52133144-52133163 | None:intergenic | 20.0% |
| !! | AAAATACCATATAAAATGCT+TGG | + | chr7_4:52133700-52133719 | None:intergenic | 20.0% |
| !!! | ACACAATAAAAATAGTTTGT+GGG | + | chr7_4:52132184-52132203 | None:intergenic | 20.0% |
| !! | AACACAATAAAAATAGTTTG+TGG | + | chr7_4:52132185-52132204 | None:intergenic | 20.0% |
| !! | ATTATACCTTAAAATTCTAG+GGG | + | chr7_4:52132315-52132334 | None:intergenic | 20.0% |
| !! | CATTATACCTTAAAATTCTA+GGG | + | chr7_4:52132316-52132335 | None:intergenic | 20.0% |
| !! | ACATTATACCTTAAAATTCT+AGG | + | chr7_4:52132317-52132336 | None:intergenic | 20.0% |
| !! | AAAAAGAATCTTAAGGTATA+AGG | - | chr7_4:52132345-52132364 | Msa1161820:intron | 20.0% |
| !! | CATAATTCTAACAAATATCA+CGG | - | chr7_4:52132388-52132407 | Msa1161820:CDS | 20.0% |
| !! | ATAATTCTAACAAATATCAC+GGG | - | chr7_4:52132389-52132408 | Msa1161820:CDS | 20.0% |
| !! | CTATCAAAGACTATTAATAT+GGG | + | chr7_4:52132492-52132511 | None:intergenic | 20.0% |
| !! | TACCTAAAATTTAATGATCA+TGG | - | chr7_4:52133139-52133158 | Msa1161820:intron | 20.0% |
| !!! | TTCCATGATCATTAAATTTT+AGG | + | chr7_4:52133144-52133163 | None:intergenic | 20.0% |
| !! | AAAATACCATATAAAATGCT+TGG | + | chr7_4:52133700-52133719 | None:intergenic | 20.0% |
| ! | TAATTCTAACAAATATCACG+GGG | - | chr7_4:52132390-52132409 | Msa1161820:CDS | 25.0% |
| !!! | AGTTTTTCAGTAACATAACA+AGG | + | chr7_4:52132443-52132462 | None:intergenic | 25.0% |
| ! | CCTATCAAAGACTATTAATA+TGG | + | chr7_4:52132493-52132512 | None:intergenic | 25.0% |
| ! | CCATATTAATAGTCTTTGAT+AGG | - | chr7_4:52132490-52132509 | Msa1161820:intron | 25.0% |
| ! | TATGAGAAACTGAATAAAGT+TGG | - | chr7_4:52132561-52132580 | Msa1161820:intron | 25.0% |
| ! | ATGAGAAACTGAATAAAGTT+GGG | - | chr7_4:52132562-52132581 | Msa1161820:intron | 25.0% |
| !!! | TCTAAGTAAATTCTAAGACT+TGG | + | chr7_4:52132743-52132762 | None:intergenic | 25.0% |
| ! | CTGAAAATGTGTTTATAAGT+GGG | + | chr7_4:52133030-52133049 | None:intergenic | 25.0% |
| ! | TCTGAAAATGTGTTTATAAG+TGG | + | chr7_4:52133031-52133050 | None:intergenic | 25.0% |
| !!! | ATTCATTTTTTCCTAACTTC+AGG | - | chr7_4:52133217-52133236 | Msa1161820:intron | 25.0% |
| ! | ATATATTCATTCCTGAAGTT+AGG | + | chr7_4:52133231-52133250 | None:intergenic | 25.0% |
| ! | AGATATAATTCAGCAAATGT+GGG | - | chr7_4:52133279-52133298 | Msa1161820:intron | 25.0% |
| !! | TTTTCTCATGTTATTGATCA+TGG | - | chr7_4:52133491-52133510 | Msa1161820:intron | 25.0% |
| !! | AAGAAACCAAGCATTTTATA+TGG | - | chr7_4:52133691-52133710 | Msa1161820:intron | 25.0% |
| ! | TCTATTTAGAGACTTCAATT+TGG | - | chr7_4:52133749-52133768 | Msa1161820:intron | 25.0% |
| ! | TAATTCTAACAAATATCACG+GGG | - | chr7_4:52132390-52132409 | Msa1161820:CDS | 25.0% |
| !!! | AGTTTTTCAGTAACATAACA+AGG | + | chr7_4:52132443-52132462 | None:intergenic | 25.0% |
| ! | CCTATCAAAGACTATTAATA+TGG | + | chr7_4:52132493-52132512 | None:intergenic | 25.0% |
| ! | CCATATTAATAGTCTTTGAT+AGG | - | chr7_4:52132490-52132509 | Msa1161820:intron | 25.0% |
| ! | TATGAGAAACTGAATAAAGT+TGG | - | chr7_4:52132561-52132580 | Msa1161820:intron | 25.0% |
| ! | ATGAGAAACTGAATAAAGTT+GGG | - | chr7_4:52132562-52132581 | Msa1161820:intron | 25.0% |
| !!! | TCTAAGTAAATTCTAAGACT+TGG | + | chr7_4:52132743-52132762 | None:intergenic | 25.0% |
| ! | CTGAAAATGTGTTTATAAGT+GGG | + | chr7_4:52133030-52133049 | None:intergenic | 25.0% |
| ! | TCTGAAAATGTGTTTATAAG+TGG | + | chr7_4:52133031-52133050 | None:intergenic | 25.0% |
| !!! | ATTCATTTTTTCCTAACTTC+AGG | - | chr7_4:52133217-52133236 | Msa1161820:intron | 25.0% |
| ! | ATATATTCATTCCTGAAGTT+AGG | + | chr7_4:52133231-52133250 | None:intergenic | 25.0% |
| ! | AGATATAATTCAGCAAATGT+GGG | - | chr7_4:52133279-52133298 | Msa1161820:intron | 25.0% |
| !! | TTTTCTCATGTTATTGATCA+TGG | - | chr7_4:52133491-52133510 | Msa1161820:intron | 25.0% |
| !! | AAGAAACCAAGCATTTTATA+TGG | - | chr7_4:52133691-52133710 | Msa1161820:intron | 25.0% |
| ! | TCTATTTAGAGACTTCAATT+TGG | - | chr7_4:52133749-52133768 | Msa1161820:intron | 25.0% |
| ! | AGACACTTTTCTACTGTATA+TGG | + | chr7_4:52132136-52132155 | None:intergenic | 30.0% |
| ! | AATAAAAATAGTTTGTGGGC+AGG | + | chr7_4:52132180-52132199 | None:intergenic | 30.0% |
| CTGTTAAGATTGATTAAGCA+TGG | - | chr7_4:52132232-52132251 | Msa1161820:intron | 30.0% | |
| AGAATTATGAAACCAGTGTA+GGG | + | chr7_4:52132377-52132396 | None:intergenic | 30.0% | |
| TAGAATTATGAAACCAGTGT+AGG | + | chr7_4:52132378-52132397 | None:intergenic | 30.0% | |
| !!! | TCTTTGATTTCCTTGTTTTG+AGG | - | chr7_4:52132590-52132609 | Msa1161820:intron | 30.0% |
| !!! | CTTTGATTTCCTTGTTTTGA+GGG | - | chr7_4:52132591-52132610 | Msa1161820:intron | 30.0% |
| !!! | TTTGATTTCCTTGTTTTGAG+GGG | - | chr7_4:52132592-52132611 | Msa1161820:intron | 30.0% |
| !!! | ATTTTTTTCCCCTCAAAACA+AGG | + | chr7_4:52132603-52132622 | None:intergenic | 30.0% |
| !!! | TGTTTTGAGGGGAAAAAAAT+TGG | - | chr7_4:52132603-52132622 | Msa1161820:intron | 30.0% |
| !!! | GTTTTGAGGGGAAAAAAATT+GGG | - | chr7_4:52132604-52132623 | Msa1161820:intron | 30.0% |
| TAACTCAATCCCTATAAAAC+CGG | - | chr7_4:52132983-52133002 | Msa1161820:intron | 30.0% | |
| AAAATGTGTTTATAAGTGGG+AGG | + | chr7_4:52133027-52133046 | None:intergenic | 30.0% | |
| AGATCTTATCTAATCCAATG+TGG | - | chr7_4:52133048-52133067 | Msa1161820:intron | 30.0% | |
| GATCTTATCTAATCCAATGT+GGG | - | chr7_4:52133049-52133068 | Msa1161820:intron | 30.0% | |
| !! | TGTTTTTAAGAATCCCACAT+TGG | + | chr7_4:52133065-52133084 | None:intergenic | 30.0% |
| ATGAATATATGCACAAGTCA+TGG | - | chr7_4:52133241-52133260 | Msa1161820:intron | 30.0% | |
| CAGATATAATTCAGCAAATG+TGG | - | chr7_4:52133278-52133297 | Msa1161820:intron | 30.0% | |
| TAAATTGAGCCCATTAGAAA+TGG | - | chr7_4:52133603-52133622 | Msa1161820:intron | 30.0% | |
| AAATTGAGCCCATTAGAAAT+GGG | - | chr7_4:52133604-52133623 | Msa1161820:intron | 30.0% | |
| ! | TTTCTTGATAACCTTATGGA+CGG | + | chr7_4:52133677-52133696 | None:intergenic | 30.0% |
| ! | TTGGTTTCTTGATAACCTTA+TGG | + | chr7_4:52133681-52133700 | None:intergenic | 30.0% |
| GAAGTCTCTAAATAGATCAA+AGG | + | chr7_4:52133745-52133764 | None:intergenic | 30.0% | |
| ! | AGACACTTTTCTACTGTATA+TGG | + | chr7_4:52132136-52132155 | None:intergenic | 30.0% |
| ! | AATAAAAATAGTTTGTGGGC+AGG | + | chr7_4:52132180-52132199 | None:intergenic | 30.0% |
| CTGTTAAGATTGATTAAGCA+TGG | - | chr7_4:52132232-52132251 | Msa1161820:intron | 30.0% | |
| AGAATTATGAAACCAGTGTA+GGG | + | chr7_4:52132377-52132396 | None:intergenic | 30.0% | |
| TAGAATTATGAAACCAGTGT+AGG | + | chr7_4:52132378-52132397 | None:intergenic | 30.0% | |
| !!! | TCTTTGATTTCCTTGTTTTG+AGG | - | chr7_4:52132590-52132609 | Msa1161820:intron | 30.0% |
| !!! | CTTTGATTTCCTTGTTTTGA+GGG | - | chr7_4:52132591-52132610 | Msa1161820:intron | 30.0% |
| !!! | TTTGATTTCCTTGTTTTGAG+GGG | - | chr7_4:52132592-52132611 | Msa1161820:intron | 30.0% |
| !!! | ATTTTTTTCCCCTCAAAACA+AGG | + | chr7_4:52132603-52132622 | None:intergenic | 30.0% |
| !!! | TGTTTTGAGGGGAAAAAAAT+TGG | - | chr7_4:52132603-52132622 | Msa1161820:intron | 30.0% |
| !!! | GTTTTGAGGGGAAAAAAATT+GGG | - | chr7_4:52132604-52132623 | Msa1161820:intron | 30.0% |
| TAACTCAATCCCTATAAAAC+CGG | - | chr7_4:52132983-52133002 | Msa1161820:intron | 30.0% | |
| AAAATGTGTTTATAAGTGGG+AGG | + | chr7_4:52133027-52133046 | None:intergenic | 30.0% | |
| AGATCTTATCTAATCCAATG+TGG | - | chr7_4:52133048-52133067 | Msa1161820:intron | 30.0% | |
| GATCTTATCTAATCCAATGT+GGG | - | chr7_4:52133049-52133068 | Msa1161820:intron | 30.0% | |
| !! | TGTTTTTAAGAATCCCACAT+TGG | + | chr7_4:52133065-52133084 | None:intergenic | 30.0% |
| ATGAATATATGCACAAGTCA+TGG | - | chr7_4:52133241-52133260 | Msa1161820:intron | 30.0% | |
| CAGATATAATTCAGCAAATG+TGG | - | chr7_4:52133278-52133297 | Msa1161820:intron | 30.0% | |
| TAAATTGAGCCCATTAGAAA+TGG | - | chr7_4:52133603-52133622 | Msa1161820:intron | 30.0% | |
| AAATTGAGCCCATTAGAAAT+GGG | - | chr7_4:52133604-52133623 | Msa1161820:intron | 30.0% | |
| ! | TTTCTTGATAACCTTATGGA+CGG | + | chr7_4:52133677-52133696 | None:intergenic | 30.0% |
| ! | TTGGTTTCTTGATAACCTTA+TGG | + | chr7_4:52133681-52133700 | None:intergenic | 30.0% |
| GAAGTCTCTAAATAGATCAA+AGG | + | chr7_4:52133745-52133764 | None:intergenic | 30.0% | |
| !!! | AGTTTGCTTCTGAGATTTTG+AGG | - | chr7_4:52132028-52132047 | Msa1161820:CDS | 35.0% |
| ! | CCTTAAAATTCTAGGGGATT+TGG | + | chr7_4:52132309-52132328 | None:intergenic | 35.0% |
| ! | CCAAATCCCCTAGAATTTTA+AGG | - | chr7_4:52132306-52132325 | Msa1161820:intron | 35.0% |
| TAACTCAACCCCTATATAAC+TGG | - | chr7_4:52132777-52132796 | Msa1161820:intron | 35.0% | |
| AACTCAACCCCTATATAACT+GGG | - | chr7_4:52132778-52132797 | Msa1161820:intron | 35.0% | |
| TCTACAACCCAGTTATATAG+GGG | + | chr7_4:52132788-52132807 | None:intergenic | 35.0% | |
| CTCTACAACCCAGTTATATA+GGG | + | chr7_4:52132789-52132808 | None:intergenic | 35.0% | |
| ACTCTACAACCCAGTTATAT+AGG | + | chr7_4:52132790-52132809 | None:intergenic | 35.0% | |
| CTGAAAAAGAGCTTATAAGC+GGG | + | chr7_4:52132824-52132843 | None:intergenic | 35.0% | |
| CCTGAAAAAGAGCTTATAAG+CGG | + | chr7_4:52132825-52132844 | None:intergenic | 35.0% | |
| ! | GGTCTTATCTCATCTAGTTT+AGG | - | chr7_4:52132843-52132862 | Msa1161820:intron | 35.0% |
| GGCAAATTAATCACTCCTTT+GGG | - | chr7_4:52133300-52133319 | Msa1161820:intron | 35.0% | |
| ATTGCTTGCCCATTTCTAAT+GGG | + | chr7_4:52133615-52133634 | None:intergenic | 35.0% | |
| TATTGCTTGCCCATTTCTAA+TGG | + | chr7_4:52133616-52133635 | None:intergenic | 35.0% | |
| !!! | AGTTTGCTTCTGAGATTTTG+AGG | - | chr7_4:52132028-52132047 | Msa1161820:CDS | 35.0% |
| ! | CCTTAAAATTCTAGGGGATT+TGG | + | chr7_4:52132309-52132328 | None:intergenic | 35.0% |
| ! | CCAAATCCCCTAGAATTTTA+AGG | - | chr7_4:52132306-52132325 | Msa1161820:intron | 35.0% |
| TAACTCAACCCCTATATAAC+TGG | - | chr7_4:52132777-52132796 | Msa1161820:intron | 35.0% | |
| AACTCAACCCCTATATAACT+GGG | - | chr7_4:52132778-52132797 | Msa1161820:intron | 35.0% | |
| TCTACAACCCAGTTATATAG+GGG | + | chr7_4:52132788-52132807 | None:intergenic | 35.0% | |
| CTCTACAACCCAGTTATATA+GGG | + | chr7_4:52132789-52132808 | None:intergenic | 35.0% | |
| ACTCTACAACCCAGTTATAT+AGG | + | chr7_4:52132790-52132809 | None:intergenic | 35.0% | |
| CTGAAAAAGAGCTTATAAGC+GGG | + | chr7_4:52132824-52132843 | None:intergenic | 35.0% | |
| CCTGAAAAAGAGCTTATAAG+CGG | + | chr7_4:52132825-52132844 | None:intergenic | 35.0% | |
| ! | GGTCTTATCTCATCTAGTTT+AGG | - | chr7_4:52132843-52132862 | Msa1161820:intron | 35.0% |
| GGCAAATTAATCACTCCTTT+GGG | - | chr7_4:52133300-52133319 | Msa1161820:intron | 35.0% | |
| ATTGCTTGCCCATTTCTAAT+GGG | + | chr7_4:52133615-52133634 | None:intergenic | 35.0% | |
| TATTGCTTGCCCATTTCTAA+TGG | + | chr7_4:52133616-52133635 | None:intergenic | 35.0% | |
| ! | AAGAGCAGCTATCCTTTTAG+AGG | - | chr7_4:52131989-52132008 | Msa1161820:CDS | 40.0% |
| ! | AGAGCAGCTATCCTTTTAGA+GGG | - | chr7_4:52131990-52132009 | Msa1161820:CDS | 40.0% |
| GGTTGAATCTGCTAAAGTTC+AGG | - | chr7_4:52132079-52132098 | Msa1161820:intron | 40.0% | |
| CTTTCAGTTGAAGTTTGACG+TGG | - | chr7_4:52132261-52132280 | Msa1161820:intron | 40.0% | |
| TGACGTGGTTGCATTCATAT+AGG | - | chr7_4:52132276-52132295 | Msa1161820:intron | 40.0% | |
| ! | CCGCTTATAAGCTCTTTTTC+AGG | - | chr7_4:52132822-52132841 | Msa1161820:intron | 40.0% |
| CTCTAGATGTTCAGAATGAG+AGG | + | chr7_4:52132882-52132901 | None:intergenic | 40.0% | |
| ! | TGGTTCTATGGATCTTGGAT+AGG | - | chr7_4:52132928-52132947 | Msa1161820:intron | 40.0% |
| GGGCAAATTAATCACTCCTT+TGG | - | chr7_4:52133299-52133318 | Msa1161820:intron | 40.0% | |
| ! | ACTACACCAAAAGCATGAGT+TGG | - | chr7_4:52133352-52133371 | Msa1161820:intron | 40.0% |
| ! | GTCTGCATCTACTGTAGTTT+TGG | + | chr7_4:52133398-52133417 | None:intergenic | 40.0% |
| ACAGTAGATGCAGACAAGAT+TGG | - | chr7_4:52133403-52133422 | Msa1161820:intron | 40.0% | |
| !! | TGGTGTTGTAGGAATACTTC+AGG | - | chr7_4:52133423-52133442 | Msa1161820:intron | 40.0% |
| TGAAAATTCGACCGTCCATA+AGG | - | chr7_4:52133663-52133682 | Msa1161820:intron | 40.0% | |
| ! | AAGAGCAGCTATCCTTTTAG+AGG | - | chr7_4:52131989-52132008 | Msa1161820:CDS | 40.0% |
| ! | AGAGCAGCTATCCTTTTAGA+GGG | - | chr7_4:52131990-52132009 | Msa1161820:CDS | 40.0% |
| GGTTGAATCTGCTAAAGTTC+AGG | - | chr7_4:52132079-52132098 | Msa1161820:intron | 40.0% | |
| CTTTCAGTTGAAGTTTGACG+TGG | - | chr7_4:52132261-52132280 | Msa1161820:intron | 40.0% | |
| TGACGTGGTTGCATTCATAT+AGG | - | chr7_4:52132276-52132295 | Msa1161820:intron | 40.0% | |
| ! | CCGCTTATAAGCTCTTTTTC+AGG | - | chr7_4:52132822-52132841 | Msa1161820:intron | 40.0% |
| CTCTAGATGTTCAGAATGAG+AGG | + | chr7_4:52132882-52132901 | None:intergenic | 40.0% | |
| ! | TGGTTCTATGGATCTTGGAT+AGG | - | chr7_4:52132928-52132947 | Msa1161820:intron | 40.0% |
| GGGCAAATTAATCACTCCTT+TGG | - | chr7_4:52133299-52133318 | Msa1161820:intron | 40.0% | |
| ! | ACTACACCAAAAGCATGAGT+TGG | - | chr7_4:52133352-52133371 | Msa1161820:intron | 40.0% |
| ! | GTCTGCATCTACTGTAGTTT+TGG | + | chr7_4:52133398-52133417 | None:intergenic | 40.0% |
| ACAGTAGATGCAGACAAGAT+TGG | - | chr7_4:52133403-52133422 | Msa1161820:intron | 40.0% | |
| !! | TGGTGTTGTAGGAATACTTC+AGG | - | chr7_4:52133423-52133442 | Msa1161820:intron | 40.0% |
| TGAAAATTCGACCGTCCATA+AGG | - | chr7_4:52133663-52133682 | Msa1161820:intron | 40.0% | |
| !! | ATCCTTTTAGAGGGATGCAG+TGG | - | chr7_4:52131999-52132018 | Msa1161820:CDS | 45.0% |
| TTCCACTGCATCCCTCTAAA+AGG | + | chr7_4:52132004-52132023 | None:intergenic | 45.0% | |
| !!! | CTTCTGAGATTTTGAGGCCT+CGG | - | chr7_4:52132034-52132053 | Msa1161820:CDS | 45.0% |
| !!! | TTCTGAGATTTTGAGGCCTC+GGG | - | chr7_4:52132035-52132054 | Msa1161820:CDS | 45.0% |
| AGACTGTATGACACACTGAG+AGG | - | chr7_4:52132209-52132228 | Msa1161820:intron | 45.0% | |
| ATAAGGTGAATGCCCTACAC+TGG | - | chr7_4:52132362-52132381 | Msa1161820:CDS | 45.0% | |
| TGACCTAAGTGACCAGATAG+CGG | - | chr7_4:52132904-52132923 | Msa1161820:intron | 45.0% | |
| !! | TCCCTATAAAACCGGCTTGT+AGG | - | chr7_4:52132991-52133010 | Msa1161820:intron | 45.0% |
| !! | CCCTACAAGCCGGTTTTATA+GGG | + | chr7_4:52132995-52133014 | None:intergenic | 45.0% |
| !! | CCCTATAAAACCGGCTTGTA+GGG | - | chr7_4:52132992-52133011 | Msa1161820:intron | 45.0% |
| !! | ACCCTACAAGCCGGTTTTAT+AGG | + | chr7_4:52132996-52133015 | None:intergenic | 45.0% |
| ! | ATACACGCATTGGTGAGTGT+GGG | - | chr7_4:52133327-52133346 | Msa1161820:intron | 45.0% |
| ! | CCTTCTCCAACTCATGCTTT+TGG | + | chr7_4:52133361-52133380 | None:intergenic | 45.0% |
| ! | CCAAAAGCATGAGTTGGAGA+AGG | - | chr7_4:52133358-52133377 | Msa1161820:intron | 45.0% |
| !! | GCAGACAAGATTGGTGTTGT+AGG | - | chr7_4:52133412-52133431 | Msa1161820:intron | 45.0% |
| ! | TGGACGGTCGAATTTTCATC+AGG | + | chr7_4:52133661-52133680 | None:intergenic | 45.0% |
| !! | ATCCTTTTAGAGGGATGCAG+TGG | - | chr7_4:52131999-52132018 | Msa1161820:CDS | 45.0% |
| TTCCACTGCATCCCTCTAAA+AGG | + | chr7_4:52132004-52132023 | None:intergenic | 45.0% | |
| !!! | CTTCTGAGATTTTGAGGCCT+CGG | - | chr7_4:52132034-52132053 | Msa1161820:CDS | 45.0% |
| !!! | TTCTGAGATTTTGAGGCCTC+GGG | - | chr7_4:52132035-52132054 | Msa1161820:CDS | 45.0% |
| AGACTGTATGACACACTGAG+AGG | - | chr7_4:52132209-52132228 | Msa1161820:intron | 45.0% | |
| ATAAGGTGAATGCCCTACAC+TGG | - | chr7_4:52132362-52132381 | Msa1161820:CDS | 45.0% | |
| TGACCTAAGTGACCAGATAG+CGG | - | chr7_4:52132904-52132923 | Msa1161820:intron | 45.0% | |
| !! | TCCCTATAAAACCGGCTTGT+AGG | - | chr7_4:52132991-52133010 | Msa1161820:intron | 45.0% |
| !! | CCCTACAAGCCGGTTTTATA+GGG | + | chr7_4:52132995-52133014 | None:intergenic | 45.0% |
| !! | CCCTATAAAACCGGCTTGTA+GGG | - | chr7_4:52132992-52133011 | Msa1161820:intron | 45.0% |
| !! | ACCCTACAAGCCGGTTTTAT+AGG | + | chr7_4:52132996-52133015 | None:intergenic | 45.0% |
| ! | ATACACGCATTGGTGAGTGT+GGG | - | chr7_4:52133327-52133346 | Msa1161820:intron | 45.0% |
| ! | CCTTCTCCAACTCATGCTTT+TGG | + | chr7_4:52133361-52133380 | None:intergenic | 45.0% |
| ! | CCAAAAGCATGAGTTGGAGA+AGG | - | chr7_4:52133358-52133377 | Msa1161820:intron | 45.0% |
| !! | GCAGACAAGATTGGTGTTGT+AGG | - | chr7_4:52133412-52133431 | Msa1161820:intron | 45.0% |
| ! | TGGACGGTCGAATTTTCATC+AGG | + | chr7_4:52133661-52133680 | None:intergenic | 45.0% |
| !!! | TTTTATATAAATTTTTAAGA+TGG | + | chr7_4:52132675-52132694 | None:intergenic | 5.0% |
| !!! | TTTTATATAAATTTTTAAGA+TGG | + | chr7_4:52132675-52132694 | None:intergenic | 5.0% |
| ! | ACCATCATCGGTCTGAAGTG+TGG | - | chr7_4:52132058-52132077 | Msa1161820:intron | 50.0% |
| ACCACACTTCAGACCGATGA+TGG | + | chr7_4:52132062-52132081 | None:intergenic | 50.0% | |
| ! | TAGTTTGTGGGCAGGACACA+AGG | + | chr7_4:52132172-52132191 | None:intergenic | 50.0% |
| GACCTAAGTGACCAGATAGC+GGG | - | chr7_4:52132905-52132924 | Msa1161820:intron | 50.0% | |
| GCATCTATCACCCTACAAGC+CGG | + | chr7_4:52133005-52133024 | None:intergenic | 50.0% | |
| AATGCGTGTATGGCTCCCAA+AGG | + | chr7_4:52133318-52133337 | None:intergenic | 50.0% | |
| TTTGGGAGCCATACACGCAT+TGG | - | chr7_4:52133317-52133336 | Msa1161820:intron | 50.0% | |
| CACACTCACCAATGCGTGTA+TGG | + | chr7_4:52133328-52133347 | None:intergenic | 50.0% | |
| ! | CATACACGCATTGGTGAGTG+TGG | - | chr7_4:52133326-52133345 | Msa1161820:intron | 50.0% |
| ! | ACCATCATCGGTCTGAAGTG+TGG | - | chr7_4:52132058-52132077 | Msa1161820:intron | 50.0% |
| ACCACACTTCAGACCGATGA+TGG | + | chr7_4:52132062-52132081 | None:intergenic | 50.0% | |
| ! | TAGTTTGTGGGCAGGACACA+AGG | + | chr7_4:52132172-52132191 | None:intergenic | 50.0% |
| GACCTAAGTGACCAGATAGC+GGG | - | chr7_4:52132905-52132924 | Msa1161820:intron | 50.0% | |
| GCATCTATCACCCTACAAGC+CGG | + | chr7_4:52133005-52133024 | None:intergenic | 50.0% | |
| AATGCGTGTATGGCTCCCAA+AGG | + | chr7_4:52133318-52133337 | None:intergenic | 50.0% | |
| TTTGGGAGCCATACACGCAT+TGG | - | chr7_4:52133317-52133336 | Msa1161820:intron | 50.0% | |
| CACACTCACCAATGCGTGTA+TGG | + | chr7_4:52133328-52133347 | None:intergenic | 50.0% | |
| ! | CATACACGCATTGGTGAGTG+TGG | - | chr7_4:52133326-52133345 | Msa1161820:intron | 50.0% |
| CACCCGCTATCTGGTCACTT+AGG | + | chr7_4:52132910-52132929 | None:intergenic | 55.0% | |
| !! | CTAAGTGACCAGATAGCGGG+TGG | - | chr7_4:52132908-52132927 | Msa1161820:intron | 55.0% |
| CCATAGAACCACCCGCTATC+TGG | + | chr7_4:52132919-52132938 | None:intergenic | 55.0% | |
| !! | CCAGATAGCGGGTGGTTCTA+TGG | - | chr7_4:52132916-52132935 | Msa1161820:intron | 55.0% |
| ! | GCGGGTGGTTCTATGGATCT+TGG | - | chr7_4:52132923-52132942 | Msa1161820:intron | 55.0% |
| CACCCGCTATCTGGTCACTT+AGG | + | chr7_4:52132910-52132929 | None:intergenic | 55.0% | |
| !! | CTAAGTGACCAGATAGCGGG+TGG | - | chr7_4:52132908-52132927 | Msa1161820:intron | 55.0% |
| CCATAGAACCACCCGCTATC+TGG | + | chr7_4:52132919-52132938 | None:intergenic | 55.0% | |
| !! | CCAGATAGCGGGTGGTTCTA+TGG | - | chr7_4:52132916-52132935 | Msa1161820:intron | 55.0% |
| ! | GCGGGTGGTTCTATGGATCT+TGG | - | chr7_4:52132923-52132942 | Msa1161820:intron | 55.0% |
| TGAGGCCTCGGGACCATCAT+CGG | - | chr7_4:52132046-52132065 | Msa1161820:intron | 60.0% | |
| ! | TCAGACCGATGATGGTCCCG+AGG | + | chr7_4:52132054-52132073 | None:intergenic | 60.0% |
| TGAGGCCTCGGGACCATCAT+CGG | - | chr7_4:52132046-52132065 | Msa1161820:intron | 60.0% | |
| ! | TCAGACCGATGATGGTCCCG+AGG | + | chr7_4:52132054-52132073 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 52131980 | 52133821 | 52131980 | ID=Msa1161820;Name=Msa1161820 |
| chr7_4 | mRNA | 52131980 | 52133821 | 52131980 | ID=Msa1161820-mRNA-1;Parent=Msa1161820;Name=Msa1161820-mRNA-1;_AED=0.84;_eAED=0.86;_QI=0|0|0|0.5|1|1|4|0|81 |
| chr7_4 | exon | 52133815 | 52133821 | 52133815 | ID=Msa1161820-mRNA-1:exon:14963;Parent=Msa1161820-mRNA-1 |
| chr7_4 | exon | 52132357 | 52132421 | 52132357 | ID=Msa1161820-mRNA-1:exon:14962;Parent=Msa1161820-mRNA-1 |
| chr7_4 | exon | 52132089 | 52132181 | 52132089 | ID=Msa1161820-mRNA-1:exon:14961;Parent=Msa1161820-mRNA-1 |
| chr7_4 | exon | 52131980 | 52132060 | 52131980 | ID=Msa1161820-mRNA-1:exon:14960;Parent=Msa1161820-mRNA-1 |
| chr7_4 | CDS | 52133815 | 52133821 | 52133815 | ID=Msa1161820-mRNA-1:cds;Parent=Msa1161820-mRNA-1 |
| chr7_4 | CDS | 52132357 | 52132421 | 52132357 | ID=Msa1161820-mRNA-1:cds;Parent=Msa1161820-mRNA-1 |
| chr7_4 | CDS | 52132089 | 52132181 | 52132089 | ID=Msa1161820-mRNA-1:cds;Parent=Msa1161820-mRNA-1 |
| chr7_4 | CDS | 52131980 | 52132060 | 52131980 | ID=Msa1161820-mRNA-1:cds;Parent=Msa1161820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
