AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1167930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167930 MtrunA17_Chr1g0209041 90.196 51 5 0 84 134 248 298 5.93e-29 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167930 AT1G68200.1 72.222 54 12 1 84 134 194 247 2.80e-19 82.4
Msa1167930 AT1G68200.5 72.222 54 12 1 84 134 194 247 2.80e-19 82.4
Msa1167930 AT1G68200.2 72.549 51 11 1 87 134 196 246 5.33e-18 79.0
Msa1167930 AT1G68200.6 72.549 51 11 1 87 134 196 246 5.33e-18 79.0
Msa1167930 AT1G66810.1 63.265 49 18 0 86 134 209 257 3.05e-14 68.6
Msa1167930 AT1G66810.3 63.265 49 18 0 86 134 209 257 3.05e-14 68.6

Find 139 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAACCTCTCACATATTTA+AGG 0.143428 7_4:+60442781 None:intergenic
GTCTGCAGGATGGTCCTTGC+TGG 0.159266 7_4:-60445735 Msa1167930:three_prime_UTR
ACTTTCCACTCACCCGTTAA+TGG 0.208512 7_4:+60444798 None:intergenic
CTCAAAATTAAAGCATGTTT+TGG 0.214988 7_4:-60443427 Msa1167930:three_prime_UTR
CACATATTGTATCTCCCTTT+TGG 0.222625 7_4:-60444829 Msa1167930:three_prime_UTR
TCTTGAAAGATCCTCGTTAA+TGG 0.242729 7_4:+60444151 None:intergenic
TAGAGGGACAATGGGATATT+TGG 0.257183 7_4:-60443356 Msa1167930:three_prime_UTR
TTATAGATTGGGTTCTATAT+TGG 0.261401 7_4:-60443186 Msa1167930:three_prime_UTR
TGTCCTAATCCCCAACTATT+AGG 0.295582 7_4:-60443060 Msa1167930:three_prime_UTR
TATAGATTGGGTTCTATATT+GGG 0.298779 7_4:-60443185 Msa1167930:three_prime_UTR
CTGATAGGAGAAAGAGAAAA+AGG 0.299654 7_4:+60442846 None:intergenic
TTCTACACCTTTGCAATAGA+TGG 0.301971 7_4:+60443037 None:intergenic
TAGCATGGGTGGCGGATCAT+TGG 0.302028 7_4:+60445768 None:intergenic
ATGAAGCCAGGAAAATTAAA+AGG 0.324337 7_4:+60444685 None:intergenic
CAACAGGCAGTGGCGGCATT+TGG 0.339764 7_4:+60444174 None:intergenic
GAAGAAGGAACACGATAATA+TGG 0.342760 7_4:-60444277 Msa1167930:three_prime_UTR
TATGTCAATCTAACTCAAAA+TGG 0.344953 7_4:+60444451 None:intergenic
TTTGGCTTTCTCTCCATTAA+CGG 0.358667 7_4:-60444811 Msa1167930:three_prime_UTR
GAACTTACCTAAATTCTATT+AGG 0.360006 7_4:+60444119 None:intergenic
TGGCCTAATAGTTGGGGATT+AGG 0.363146 7_4:+60443057 None:intergenic
CAATAGATGGCCTAATAGTT+GGG 0.363588 7_4:+60443050 None:intergenic
GGCTTCATTATAATGTGTAT+TGG 0.364749 7_4:-60444670 Msa1167930:three_prime_UTR
CATGACGGAAATGGCATCTA+TGG 0.367595 7_4:+60445694 None:intergenic
AGCGCCGCAACGAGGGCATT+GGG 0.374913 7_4:-60447186 Msa1167930:CDS
GCAATAGATGGCCTAATAGT+TGG 0.383112 7_4:+60443049 None:intergenic
AGGGCTCATGGTTGCATCTC+AGG 0.383344 7_4:-60444866 Msa1167930:three_prime_UTR
GAAACTGGCACATGCCCTTA+TGG 0.383739 7_4:-60445826 Msa1167930:CDS
CAGCGCCGCAACGAGGGCAT+TGG 0.390618 7_4:-60447187 Msa1167930:CDS
AGAGCTTACAATTAACTGAT+AGG 0.394486 7_4:+60442831 None:intergenic
AGTGTTCCACCATTGTTTGA+TGG 0.394571 7_4:-60442985 Msa1167930:three_prime_UTR
AAGTTGTTAATGATTTCATT+AGG 0.396201 7_4:-60443120 Msa1167930:three_prime_UTR
TGTAACAAATGGCAGGAAAC+TGG 0.399409 7_4:-60445841 Msa1167930:CDS
CCACTGTAAATTACGGCATT+GGG 0.401255 7_4:-60445800 Msa1167930:CDS
TCTGCAGGATGGTCCTTGCT+GGG 0.402584 7_4:-60445734 Msa1167930:three_prime_UTR
TTGGCTTTCTCTCCATTAAC+GGG 0.411542 7_4:-60444810 Msa1167930:intron
ACAGTATAGCATGGTCCTCT+TGG 0.414780 7_4:-60445462 Msa1167930:three_prime_UTR
CAGTAAGTGCATGACGGAAA+TGG 0.414882 7_4:+60445685 None:intergenic
AAGGTATTTGTGCGAGGAGG+GGG 0.417491 7_4:-60445925 Msa1167930:CDS
ACAAAATAAAGAGCAAGAAT+TGG 0.422434 7_4:+60442949 None:intergenic
TTCTTTCAGGGAAGGGCTCA+TGG 0.426994 7_4:-60444878 Msa1167930:intron
AATGCCAGGCATCTCATAGA+AGG 0.427520 7_4:+60444202 None:intergenic
AGCATGGGTGGCGGATCATT+GGG 0.428877 7_4:+60445769 None:intergenic
AGCTCTATTTCTATCTGAAA+AGG 0.445760 7_4:-60444710 Msa1167930:three_prime_UTR
AGATCCTCGTTAATGGCAAC+AGG 0.447502 7_4:+60444158 None:intergenic
CAGTATAGCATGGTCCTCTT+GGG 0.447602 7_4:-60445461 Msa1167930:intron
ATGACATGATGCTTATAGAT+TGG 0.449166 7_4:-60443198 Msa1167930:three_prime_UTR
GCTAGCAGAATCATAATTGA+AGG 0.450621 7_4:-60448850 Msa1167930:intron
TAGGTTTGAGAGAATGACTA+TGG 0.451333 7_4:-60443101 Msa1167930:three_prime_UTR
GAGGACACTAGAGTGGGAAT+TGG 0.456363 7_4:-60448890 Msa1167930:CDS
AATTTACAGTGGTCTCCATA+AGG 0.458113 7_4:+60445811 None:intergenic
AGTACGATGGTGTTTAAACT+TGG 0.463128 7_4:+60443484 None:intergenic
GGTTCTATATTGGGCAAAAG+AGG 0.465154 7_4:-60443176 Msa1167930:three_prime_UTR
TAATGTGTATTGGAATTGCT+TGG 0.466009 7_4:-60444660 Msa1167930:three_prime_UTR
AGAACAAGCACAAATGTTAG+AGG 0.472788 7_4:-60443373 Msa1167930:three_prime_UTR
AACTGAGCAAACATACTTTG+TGG 0.475719 7_4:-60442805 Msa1167930:three_prime_UTR
ATTTACAGTGGTCTCCATAA+GGG 0.479080 7_4:+60445812 None:intergenic
AAAATTAAGTTGACGCCGCA+AGG 0.485545 7_4:-60446962 Msa1167930:intron
ATGGAGACCACTGTAAATTA+CGG 0.488892 7_4:-60445807 Msa1167930:CDS
GCTACAAAACTGAGGTCTGC+AGG 0.490461 7_4:-60445749 Msa1167930:exon
CTCGTTGCGGCGCTGCGACG+TGG 0.492213 7_4:+60447195 None:intergenic
ACCACTGTAAATTACGGCAT+TGG 0.492439 7_4:-60445801 Msa1167930:CDS
GAGTTGCATCAAGTTGAAGA+TGG 0.493345 7_4:-60443235 Msa1167930:three_prime_UTR
TATTCCTTCTATGAGATGCC+TGG 0.496545 7_4:-60444206 Msa1167930:three_prime_UTR
TCGTTAATGGCAACAGGCAG+TGG 0.497673 7_4:+60444164 None:intergenic
TGCACCTATCACTGCAAAAG+TGG 0.498118 7_4:-60443314 Msa1167930:three_prime_UTR
AAAGTGGATATCTACAGCTT+TGG 0.498218 7_4:-60443298 Msa1167930:three_prime_UTR
AAAGTTTCTATAGATAAAGA+AGG 0.504229 7_4:+60444400 None:intergenic
GGCATTTGGCTCATAATGCC+AGG 0.504404 7_4:+60444188 None:intergenic
ACAAATGTTAGAGGGACAAT+GGG 0.506091 7_4:-60443364 Msa1167930:three_prime_UTR
TTTGAGAGAATGACTATGGT+TGG 0.507037 7_4:-60443097 Msa1167930:three_prime_UTR
TGACATGATGCTTATAGATT+GGG 0.507226 7_4:-60443197 Msa1167930:three_prime_UTR
AAAAGGTATTTGTGCGAGGA+GGG 0.507280 7_4:-60445927 Msa1167930:CDS
GTTCTATATTGGGCAAAAGA+GGG 0.512150 7_4:-60443175 Msa1167930:three_prime_UTR
AATGTGTATTGGAATTGCTT+GGG 0.517681 7_4:-60444659 Msa1167930:intron
AAATGGCATCTATGGCCATA+CGG 0.517791 7_4:+60445702 None:intergenic
GCTGGGGTTGTGTTCCCGTA+TGG 0.529987 7_4:-60445717 Msa1167930:three_prime_UTR
AGACTGAGCTCTGTAACAAA+TGG 0.531908 7_4:-60445852 Msa1167930:CDS
AATGGCATCTATGGCCATAC+GGG 0.531942 7_4:+60445703 None:intergenic
TTGCGATATTGCAGCTATTG+CGG 0.533335 7_4:+60446926 None:intergenic
CTTCATACTAAGAAAGAAGA+AGG 0.534068 7_4:-60444292 Msa1167930:three_prime_UTR
CATTAACAACTTCAACATCA+TGG 0.537170 7_4:+60443131 None:intergenic
CACAAATGTTAGAGGGACAA+TGG 0.540064 7_4:-60443365 Msa1167930:three_prime_UTR
GCTCAGTCTTGAACATCCCC+TGG 0.541107 7_4:+60445866 None:intergenic
TGAACATGATACCTGCTCAC+AGG 0.545763 7_4:+60445073 None:intergenic
TAATGGAGAGAAAGCCAAAA+GGG 0.546603 7_4:+60444815 None:intergenic
CACTAGAGTGGGAATTGGCA+AGG 0.548048 7_4:-60448885 Msa1167930:CDS
ACAAGATGATCCCTGTGAGC+AGG 0.552596 7_4:-60445084 Msa1167930:intron
AAAGGCAGCGACCGCAATCG+CGG 0.559237 7_4:-60446905 Msa1167930:CDS
TGCACCCAATGCCCTCGTTG+CGG 0.560356 7_4:+60447182 None:intergenic
ATACACATTATAATGAAGCC+AGG 0.562281 7_4:+60444673 None:intergenic
AAAGGTATTTGTGCGAGGAG+GGG 0.563069 7_4:-60445926 Msa1167930:CDS
TGAGCTCTGTAACAAATGGC+AGG 0.566245 7_4:-60445848 Msa1167930:CDS
TTAATGGAGAGAAAGCCAAA+AGG 0.566616 7_4:+60444814 None:intergenic
TCAATCTAACTCAAAATGGA+AGG 0.572412 7_4:+60444455 None:intergenic
CTGCAGGATGGTCCTTGCTG+GGG 0.572424 7_4:-60445733 Msa1167930:three_prime_UTR
GAGGAGAGAGGACACTAGAG+TGG 0.575461 7_4:-60448897 Msa1167930:CDS
CAAGTTGAAGATGGAACAGA+AGG 0.576548 7_4:-60443226 Msa1167930:three_prime_UTR
TGGGATATTTGGCACCAGAA+TGG 0.579107 7_4:-60443345 Msa1167930:three_prime_UTR
CTTTAATTGTGCTTCTGATG+AGG 0.580908 7_4:-60444375 Msa1167930:three_prime_UTR
TGAGATGGTTGTGTACAACC+AGG 0.582022 7_4:-60445884 Msa1167930:CDS
AGAGGAAGAGCCTCTTGAGA+TGG 0.592690 7_4:-60445899 Msa1167930:CDS
CACGTCGCAGCGCCGCAACG+AGG 0.597988 7_4:-60447194 Msa1167930:CDS
CAAAAGGTATTTGTGCGAGG+AGG 0.598274 7_4:-60445928 Msa1167930:CDS
GAACATGATACCTGCTCACA+GGG 0.599005 7_4:+60445074 None:intergenic
TCTGAGTATGATGCTTAGAG+TGG 0.600253 7_4:-60444480 Msa1167930:three_prime_UTR
TTCTATATTGGGCAAAAGAG+GGG 0.600711 7_4:-60443174 Msa1167930:three_prime_UTR
ATTTAATTGATAGATTGTGT+AGG 0.601329 7_4:-60449382 Msa1167930:intron
AATAGATGGCCTAATAGTTG+GGG 0.603826 7_4:+60443051 None:intergenic
AGGAGAGAGGACACTAGAGT+GGG 0.604291 7_4:-60448896 Msa1167930:CDS
TGTAGAATGCAGATGTCGGA+AGG 0.608007 7_4:-60443021 Msa1167930:three_prime_UTR
CTTGTTCAGTAAGTGCATGA+CGG 0.608476 7_4:+60445679 None:intergenic
ACGTCGCAGCGCCGCAACGA+GGG 0.608528 7_4:-60447193 Msa1167930:CDS
AGGTATTTGTGCGAGGAGGG+GGG 0.610251 7_4:-60445924 Msa1167930:CDS
TGTTCATTTACAGTATAGCA+TGG 0.612842 7_4:-60445471 Msa1167930:three_prime_UTR
CAAAACTGAGGTCTGCAGGA+TGG 0.616724 7_4:-60445745 Msa1167930:exon
TTAAAATGCAGCCGCGATTG+CGG 0.617334 7_4:+60446894 None:intergenic
TATTAGGCCATCTATTGCAA+AGG 0.622506 7_4:-60443044 Msa1167930:three_prime_UTR
GTGGTCCTTAAATATGTGAG+AGG 0.625201 7_4:-60442786 Msa1167930:three_prime_UTR
GAACAAGCACAAATGTTAGA+GGG 0.627687 7_4:-60443372 Msa1167930:three_prime_UTR
CAGCAAAAGGTATTTGTGCG+AGG 0.628338 7_4:-60445931 Msa1167930:CDS
CAATAGCTGCAATATCGCAA+AGG 0.631819 7_4:-60446923 Msa1167930:CDS
GAGATGGTTGTGTACAACCA+GGG 0.638365 7_4:-60445883 Msa1167930:CDS
AAGGTGTAGAATGCAGATGT+CGG 0.642219 7_4:-60443025 Msa1167930:three_prime_UTR
CACTGTAAATTACGGCATTG+GGG 0.645709 7_4:-60445799 Msa1167930:CDS
TTGTACACAACCATCTCAAG+AGG 0.647753 7_4:+60445889 None:intergenic
TTAATGGCAACAGGCAGTGG+CGG 0.648108 7_4:+60444167 None:intergenic
ACGGGAACACAACCCCAGCA+AGG 0.654138 7_4:+60445721 None:intergenic
ACTAGAGTGGGAATTGGCAA+GGG 0.655908 7_4:-60448884 Msa1167930:CDS
CCCAATGCCGTAATTTACAG+TGG 0.659773 7_4:+60445800 None:intergenic
GTTGAAGATGGAACAGAAGG+CGG 0.668963 7_4:-60443223 Msa1167930:three_prime_UTR
GAAGGAACACGATAATATGG+TGG 0.676501 7_4:-60444274 Msa1167930:three_prime_UTR
TAGCTAAAGACATACCCAAG+AGG 0.693874 7_4:+60445447 None:intergenic
ACTGCCTGTTGCCATTAACG+AGG 0.709980 7_4:-60444162 Msa1167930:three_prime_UTR
TGATATGCAAGAAAGTACGA+TGG 0.713635 7_4:+60443471 None:intergenic
CCACCCATGCTACAAAACTG+AGG 0.721664 7_4:-60445757 Msa1167930:exon
TTGGGTGCAGAAAACTACAG+AGG 0.735727 7_4:-60447168 Msa1167930:intron
AGATGGTTGTGTACAACCAG+GGG 0.741581 7_4:-60445882 Msa1167930:CDS
GAATGACTATGGTTGGACTG+TGG 0.741878 7_4:-60443090 Msa1167930:three_prime_UTR
GGTGTGTATTGTCGTCCTTG+CGG 0.769996 7_4:+60446947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTTCTATTTATAATT+TGG - chr7_4:60444618-60444637 Msa1167930:intron 10.0%
!! TATAATTTGGAAAAATTATT+TGG - chr7_4:60444631-60444650 Msa1167930:intron 10.0%
!!! CAATTAATTGAATATATTTT+GGG - chr7_4:60445948-60445967 Msa1167930:intron 10.0%
!!! ATTATATTTTGAATAACAAA+GGG + chr7_4:60447041-60447060 None:intergenic 10.0%
!!! AATTATATTTTGAATAACAA+AGG + chr7_4:60447042-60447061 None:intergenic 10.0%
!! TAAATTGAATGTAAAATTGT+AGG - chr7_4:60443045-60443064 Msa1167930:three_prime_UTR 15.0%
!!! AAACTTTTCATATCATAAAT+TGG + chr7_4:60443452-60443471 None:intergenic 15.0%
!!! TTTAAAATTAGTGATTTGTT+GGG - chr7_4:60443522-60443541 Msa1167930:intron 15.0%
!!! TTGATTGATTTTAATGAATT+TGG - chr7_4:60443624-60443643 Msa1167930:intron 15.0%
!!! ATTAAAAATCAATCAAGTTT+TGG + chr7_4:60443699-60443718 None:intergenic 15.0%
!!! TTTATTTGATAACACATTTT+GGG - chr7_4:60444416-60444435 Msa1167930:three_prime_UTR 15.0%
!!! CATCAAAATTTAACTTAAAT+TGG + chr7_4:60445358-60445377 None:intergenic 15.0%
!! ATTATAATCTAAAAACTGTA+TGG + chr7_4:60445384-60445403 None:intergenic 15.0%
!!! CAGTTTTTAGATTATAATTT+AGG - chr7_4:60445386-60445405 Msa1167930:intron 15.0%
!!! TTTTTAGATTATAATTTAGG+TGG - chr7_4:60445389-60445408 Msa1167930:intron 15.0%
!!! GCAATTAATTGAATATATTT+TGG - chr7_4:60445947-60445966 Msa1167930:intron 15.0%
!!! TTATATTTTGAATAACAAAG+GGG + chr7_4:60447040-60447059 None:intergenic 15.0%
!!! TATGCAAATCATTTTAAAAA+AGG + chr7_4:60448503-60448522 None:intergenic 15.0%
!!! TTCTCATATAATTTTTTCAA+AGG + chr7_4:60448567-60448586 None:intergenic 15.0%
!!! TAAGTAACCAAAAATATTTT+CGG - chr7_4:60449310-60449329 Msa1167930:intron 15.0%
!! ATTTAATTGATAGATTGTGT+AGG - chr7_4:60442813-60442832 Msa1167930:three_prime_UTR 20.0%
!!! CTGATTTTGTTTTTTTTTTC+AGG - chr7_4:60442957-60442976 Msa1167930:three_prime_UTR 20.0%
!!! TCAGCTATAAATAATTTGTA+TGG - chr7_4:60443409-60443428 Msa1167930:three_prime_UTR 20.0%
!!! TATGAAAAGTTTTTTCTTTG+TGG - chr7_4:60443460-60443479 Msa1167930:three_prime_UTR 20.0%
!!! ATGAAAAGTTTTTTCTTTGT+GGG - chr7_4:60443461-60443480 Msa1167930:three_prime_UTR 20.0%
!!! GTTTAAAATTAGTGATTTGT+TGG - chr7_4:60443521-60443540 Msa1167930:intron 20.0%
!!! GTTGATGAATCTAATTTTTT+TGG - chr7_4:60443646-60443665 Msa1167930:intron 20.0%
!!! TGATTGATTTTTAATGACAT+TGG - chr7_4:60443704-60443723 Msa1167930:intron 20.0%
!! ATATCATTCATACAGTTATA+CGG - chr7_4:60443771-60443790 Msa1167930:intron 20.0%
!! AGTACTTAGATCATAATTAA+TGG + chr7_4:60443875-60443894 None:intergenic 20.0%
!!! ATTTTGCTAAAAAGATTTCT+TGG - chr7_4:60443960-60443979 Msa1167930:intron 20.0%
!!! TTTGAAAAAACGACTATTTT+TGG - chr7_4:60444209-60444228 Msa1167930:three_prime_UTR 20.0%
!!! GTTTATTTGATAACACATTT+TGG - chr7_4:60444415-60444434 Msa1167930:three_prime_UTR 20.0%
!!! ATCTGAAAATAAGTTTGTTT+TGG + chr7_4:60444500-60444519 None:intergenic 20.0%
!! TACCTTCAATAAGAATTATA+AGG - chr7_4:60444699-60444718 Msa1167930:three_prime_UTR 20.0%
!!! TTGCTTTTTATAATCTATTC+AGG - chr7_4:60444742-60444761 Msa1167930:intron 20.0%
!!! TTTTCAATATCATAAATTCG+TGG + chr7_4:60444775-60444794 None:intergenic 20.0%
!!! ATATTGAAAATTTTTCTGTG+TGG - chr7_4:60444785-60444804 Msa1167930:intron 20.0%
!!! TATTGAAAATTTTTCTGTGT+GGG - chr7_4:60444786-60444805 Msa1167930:intron 20.0%
!!! TGATATTTTAAACTGATAGA+TGG - chr7_4:60445119-60445138 Msa1167930:intron 20.0%
!!! TTTGTATTTTCAACTTTTAG+TGG - chr7_4:60445610-60445629 Msa1167930:intron 20.0%
!!! TTTAAAACTTAGTAAAACCA+AGG + chr7_4:60445648-60445667 None:intergenic 20.0%
!!! TTGGTTTTACTAAGTTTTAA+AGG - chr7_4:60445647-60445666 Msa1167930:intron 20.0%
!! AACAAAATCAAACAACTAAA+TGG + chr7_4:60445807-60445826 None:intergenic 20.0%
!! AGAAATTACCATTTCAAAAT+TGG + chr7_4:60445912-60445931 None:intergenic 20.0%
!!! ATTTTGAAATGGTAATTTCT+TGG - chr7_4:60445912-60445931 Msa1167930:CDS 20.0%
!!! AAGAAAAACTTTGAAAAGTT+TGG + chr7_4:60446622-60446641 None:intergenic 20.0%
!!! AAGTTTTTCTTTTTGCAATA+TGG - chr7_4:60446631-60446650 Msa1167930:intron 20.0%
!!! CTAATTTAGAATTTTTGTCT+TGG + chr7_4:60446683-60446702 None:intergenic 20.0%
!!! GTAGTAACTTATTTTATAAG+TGG - chr7_4:60446818-60446837 Msa1167930:intron 20.0%
!! TTATGCTGTATTAGTTATTA+AGG - chr7_4:60446892-60446911 Msa1167930:CDS 20.0%
!!! AGTGGTAATATATTTTTGTT+AGG - chr7_4:60447156-60447175 Msa1167930:intron 20.0%
!!! TGATTGAATGCTATTTATTT+TGG - chr7_4:60447248-60447267 Msa1167930:intron 20.0%
!! CAGATTATAATCTATTAAGT+TGG - chr7_4:60447275-60447294 Msa1167930:intron 20.0%
!! AAGAAAGAATCATACAAATA+TGG + chr7_4:60447639-60447658 None:intergenic 20.0%
!! TTCTTTCTTGTCTAATTATA+TGG - chr7_4:60447650-60447669 Msa1167930:intron 20.0%
!! AAAGTTTCTATAGATAAAGA+AGG + chr7_4:60447798-60447817 None:intergenic 20.0%
!! ATTTCATTAAATAATGCACT+TGG + chr7_4:60448179-60448198 None:intergenic 20.0%
!! AATTAAATTGAAACATAGTG+TGG + chr7_4:60448238-60448257 None:intergenic 20.0%
!!! ATTGATTTACCTAATTAGTT+TGG - chr7_4:60448255-60448274 Msa1167930:intron 20.0%
!!! TTGAAATCTTATTTTGTAGA+AGG - chr7_4:60448931-60448950 Msa1167930:intron 20.0%
!! AAGTTGTTAATGATTTCATT+AGG - chr7_4:60449075-60449094 Msa1167930:intron 20.0%
!!! AAAATTTTTCCATCAAACAA+TGG + chr7_4:60449222-60449241 None:intergenic 20.0%
!!! AAGTAACCAAAAATATTTTC+GGG - chr7_4:60449311-60449330 Msa1167930:intron 20.0%
!!! ATGGTAAGTTTTGTTTGATT+GGG - chr7_4:60442735-60442754 Msa1167930:three_prime_UTR 25.0%
! TATGATAATTTCATCCCATA+AGG - chr7_4:60442999-60443018 Msa1167930:three_prime_UTR 25.0%
! TTACATAGAACATACCTTAT+GGG + chr7_4:60443016-60443035 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG + chr7_4:60443017-60443036 None:intergenic 25.0%
!!! TGGTTTTAGCATAAATTTTC+AGG - chr7_4:60443276-60443295 Msa1167930:three_prime_UTR 25.0%
!!! TTTTAGCATAAATTTTCAGG+AGG - chr7_4:60443279-60443298 Msa1167930:three_prime_UTR 25.0%
!!! GATAAGTTTTATGTGTTTGT+TGG - chr7_4:60443494-60443513 Msa1167930:three_prime_UTR 25.0%
!!! TTTTTAATGACATTGGTTGA+TGG - chr7_4:60443711-60443730 Msa1167930:intron 25.0%
! TTGTATAATTGTTCTGCAAA+AGG + chr7_4:60443821-60443840 None:intergenic 25.0%
! TTTGCAGAACAATTATACAA+TGG - chr7_4:60443821-60443840 Msa1167930:intron 25.0%
! AATGGATGCATACAAATTAA+TGG + chr7_4:60443857-60443876 None:intergenic 25.0%
! TATTGTTTGTGCTATGAATT+AGG - chr7_4:60443904-60443923 Msa1167930:intron 25.0%
! ATACTATAGTATGAGTAGAT+TGG + chr7_4:60444011-60444030 None:intergenic 25.0%
! ATATACACATTGCAAAAAGA+TGG + chr7_4:60444347-60444366 None:intergenic 25.0%
! TCAGATCATTTATAACCTAA+AGG - chr7_4:60444514-60444533 Msa1167930:intron 25.0%
! CAGATCATTTATAACCTAAA+GGG - chr7_4:60444515-60444534 Msa1167930:intron 25.0%
! CACCTTATAATTCTTATTGA+AGG + chr7_4:60444704-60444723 None:intergenic 25.0%
!!! ATGAGATAAAGATTTTAGAG+AGG - chr7_4:60445147-60445166 Msa1167930:intron 25.0%
! ACATTATAGGAGAATTTAAG+AGG - chr7_4:60445503-60445522 Msa1167930:intron 25.0%
! ATATTTATGATAGCCATGTA+TGG - chr7_4:60445562-60445581 Msa1167930:intron 25.0%
!!! TAAAACCAAGGTATTGATTT+TGG + chr7_4:60445636-60445655 None:intergenic 25.0%
!!! TTTTACATTAAAGAGTGTCA+AGG + chr7_4:60446130-60446149 None:intergenic 25.0%
! TATTAAGGTAACATGTTCAT+AGG - chr7_4:60446907-60446926 Msa1167930:CDS 25.0%
! TTCCTCATTCTATATATCTT+TGG - chr7_4:60446993-60447012 Msa1167930:intron 25.0%
! AACCAAAGATATATAGAATG+AGG + chr7_4:60446998-60447017 None:intergenic 25.0%
!! AAGGGGAAAGTATATTTAAA+AGG + chr7_4:60447023-60447042 None:intergenic 25.0%
! TCACTTATCTTATTCTTTCA+GGG - chr7_4:60447305-60447324 Msa1167930:intron 25.0%
! AGAAATAAAAATAGAGAGCA+TGG + chr7_4:60447588-60447607 None:intergenic 25.0%
!!! TGATTAATTTTGTTTGCAGA+TGG - chr7_4:60447682-60447701 Msa1167930:intron 25.0%
! TATGTCAATCTAACTCAAAA+TGG + chr7_4:60447747-60447766 None:intergenic 25.0%
!! CATTTTGCCTAATAGAATTT+AGG - chr7_4:60448069-60448088 Msa1167930:intron 25.0%
! GAACTTACCTAAATTCTATT+AGG + chr7_4:60448079-60448098 None:intergenic 25.0%
! ATAGAATTTAGGTAAGTTCT+TGG - chr7_4:60448080-60448099 Msa1167930:intron 25.0%
! TGGACACAAAAAAAAACAAA+TGG + chr7_4:60448159-60448178 None:intergenic 25.0%
! TTCAAACTTCCAAACTAATT+AGG + chr7_4:60448267-60448286 None:intergenic 25.0%
! CTAATTTCAACTTATTAGGA+AGG + chr7_4:60448317-60448336 None:intergenic 25.0%
! CTCACTAATTTCAACTTATT+AGG + chr7_4:60448321-60448340 None:intergenic 25.0%
!! CTAATAAGTTGAAATTAGTG+AGG - chr7_4:60448319-60448338 Msa1167930:intron 25.0%
!!! ATTAGTGAGGTTTTTCAATT+TGG - chr7_4:60448332-60448351 Msa1167930:intron 25.0%
! ATAGTATGAGCTAATAATCA+CGG - chr7_4:60448392-60448411 Msa1167930:intron 25.0%
!! TGCATATTCATTATGCATTT+TGG - chr7_4:60448517-60448536 Msa1167930:intron 25.0%
!! CTCAAAATTAAAGCATGTTT+TGG - chr7_4:60448768-60448787 Msa1167930:intron 25.0%
!!! AATTAAAGCATGTTTTGGAA+TGG - chr7_4:60448773-60448792 Msa1167930:intron 25.0%
! TTATAGATTGGGTTCTATAT+TGG - chr7_4:60449009-60449028 Msa1167930:intron 25.0%
! TATAGATTGGGTTCTATATT+GGG - chr7_4:60449010-60449029 Msa1167930:intron 25.0%
! ACAAAATAAAGAGCAAGAAT+TGG + chr7_4:60449249-60449268 None:intergenic 25.0%
!! AACACCTCTTTTCTTTTTCA+CGG + chr7_4:60443138-60443157 None:intergenic 30.0%
! TGTATGACTTTTGTATCTAC+TGG - chr7_4:60443235-60443254 Msa1167930:three_prime_UTR 30.0%
GGTTTATCTATACAGTAACA+TGG - chr7_4:60443256-60443275 Msa1167930:three_prime_UTR 30.0%
!! TCACTGTCATCTAAAGTTTT+AGG + chr7_4:60443739-60443758 None:intergenic 30.0%
!! TACAAATTAATGGACTTCCA+GGG + chr7_4:60443847-60443866 None:intergenic 30.0%
!! ATACAAATTAATGGACTTCC+AGG + chr7_4:60443848-60443867 None:intergenic 30.0%
ATATAAGAGTTGTCAAACTG+CGG - chr7_4:60444110-60444129 Msa1167930:intron 30.0%
AAGAGTTCAAGTCTACTTAT+AGG - chr7_4:60444317-60444336 Msa1167930:three_prime_UTR 30.0%
GATCATTTAATTGCACAATC+TGG + chr7_4:60444448-60444467 None:intergenic 30.0%
TAAATGATCTCAAAGTCAGT+CGG - chr7_4:60444459-60444478 Msa1167930:three_prime_UTR 30.0%
TCATTTATAACCTAAAGGGT+TGG - chr7_4:60444519-60444538 Msa1167930:intron 30.0%
AAATGGAACCATTGTGAAAA+TGG + chr7_4:60444547-60444566 None:intergenic 30.0%
! GAAGACTTTTACACAGAAAA+TGG + chr7_4:60444564-60444583 None:intergenic 30.0%
! GAGAATCTGCATTGATATTA+TGG + chr7_4:60444592-60444611 None:intergenic 30.0%
TGGGTTAAAATGTCACAAAA+AGG + chr7_4:60444864-60444883 None:intergenic 30.0%
AAACCATATACAGATCACAT+TGG + chr7_4:60444898-60444917 None:intergenic 30.0%
!! AAAGATTTTAGAGAGGAAAC+AGG - chr7_4:60445154-60445173 Msa1167930:intron 30.0%
TATATAGAACTAGCAAGACT+AGG - chr7_4:60445455-60445474 Msa1167930:intron 30.0%
CCTATAATGTAGACATTGTA+TGG + chr7_4:60445493-60445512 None:intergenic 30.0%
CCATACAATGTCTACATTAT+AGG - chr7_4:60445490-60445509 Msa1167930:intron 30.0%
!!! ACTAAGTTTTAAAGGCCAAA+TGG - chr7_4:60445655-60445674 Msa1167930:intron 30.0%
GTAATGTCTTGAATCTTCAT+TGG - chr7_4:60445844-60445863 Msa1167930:CDS 30.0%
!! AACTGTGTCCAATTTTGAAA+TGG - chr7_4:60445901-60445920 Msa1167930:CDS 30.0%
AAACATTAGTATGACTGTCA+AGG + chr7_4:60446030-60446049 None:intergenic 30.0%
CACCATTTAATAACAATGAG+TGG - chr7_4:60446167-60446186 Msa1167930:intron 30.0%
! GTCCACTCATTGTTATTAAA+TGG + chr7_4:60446172-60446191 None:intergenic 30.0%
! AAACTTTGAAAAGTTTGGCA+GGG + chr7_4:60446617-60446636 None:intergenic 30.0%
! AAAACTTTGAAAAGTTTGGC+AGG + chr7_4:60446618-60446637 None:intergenic 30.0%
AGGTATCATGTTCATAGTAT+TGG - chr7_4:60447131-60447150 Msa1167930:intron 30.0%
!! ATGTTCATAGTATTGGTTAG+TGG - chr7_4:60447138-60447157 Msa1167930:intron 30.0%
! TTTTTGTTAGGCACACTAAA+AGG - chr7_4:60447168-60447187 Msa1167930:intron 30.0%
CTCACTTATCTTATTCTTTC+AGG - chr7_4:60447304-60447323 Msa1167930:intron 30.0%
TTATCTTATTCTTTCAGGGA+AGG - chr7_4:60447309-60447328 Msa1167930:intron 30.0%
TATCTTATTCTTTCAGGGAA+GGG - chr7_4:60447310-60447329 Msa1167930:intron 30.0%
TAGAGCTGAAAAAAGAGAAT+GGG + chr7_4:60447472-60447491 None:intergenic 30.0%
ATAGAGCTGAAAAAAGAGAA+TGG + chr7_4:60447473-60447492 None:intergenic 30.0%
!! AGCTCTATTTCTATCTGAAA+AGG - chr7_4:60447485-60447504 Msa1167930:intron 30.0%
ATGAAGCCAGGAAAATTAAA+AGG + chr7_4:60447513-60447532 None:intergenic 30.0%
ATACACATTATAATGAAGCC+AGG + chr7_4:60447525-60447544 None:intergenic 30.0%
GGCTTCATTATAATGTGTAT+TGG - chr7_4:60447525-60447544 Msa1167930:intron 30.0%
TAATGTGTATTGGAATTGCT+TGG - chr7_4:60447535-60447554 Msa1167930:intron 30.0%
AATGTGTATTGGAATTGCTT+GGG - chr7_4:60447536-60447555 Msa1167930:intron 30.0%
TCAATCTAACTCAAAATGGA+AGG + chr7_4:60447743-60447762 None:intergenic 30.0%
CTTCATACTAAGAAAGAAGA+AGG - chr7_4:60447903-60447922 Msa1167930:intron 30.0%
AAATTGAAACATAGTGTGGT+TGG + chr7_4:60448234-60448253 None:intergenic 30.0%
ACTTATTAGGAAGGATAAAG+AGG + chr7_4:60448308-60448327 None:intergenic 30.0%
TCTCATTCAGCCAAAAATAT+GGG + chr7_4:60448373-60448392 None:intergenic 30.0%
ATCTCATTCAGCCAAAAATA+TGG + chr7_4:60448374-60448393 None:intergenic 30.0%
!! AGCAATATTTTTGATCTAGC+AGG - chr7_4:60448658-60448677 Msa1167930:intron 30.0%
ATGACATGATGCTTATAGAT+TGG - chr7_4:60448997-60449016 Msa1167930:intron 30.0%
TGACATGATGCTTATAGATT+GGG - chr7_4:60448998-60449017 Msa1167930:intron 30.0%
CATTAACAACTTCAACATCA+TGG + chr7_4:60449067-60449086 None:intergenic 30.0%
! ATTTTTCCATCAAACAATGG+TGG + chr7_4:60449219-60449238 None:intergenic 30.0%
! GAACAACCCGAAAATATTTT+TGG + chr7_4:60449320-60449339 None:intergenic 30.0%
!!! AAATATTTTCGGGTTGTTCA+TGG - chr7_4:60449321-60449340 Msa1167930:intron 30.0%
AGAGCTTACAATTAACTGAT+AGG + chr7_4:60449367-60449386 None:intergenic 30.0%
TAGATTGTGTAGGTATGAAG+AGG - chr7_4:60442823-60442842 Msa1167930:three_prime_UTR 35.0%
AGATTGTGTAGGTATGAAGA+GGG - chr7_4:60442824-60442843 Msa1167930:three_prime_UTR 35.0%
! TGTTATGACCACTTGCATTT+TGG - chr7_4:60443203-60443222 Msa1167930:three_prime_UTR 35.0%
AAGTTAGTCCAAAATGCAAG+TGG + chr7_4:60443214-60443233 None:intergenic 35.0%
!! ATAAATTTTCAGGAGGAGAG+AGG - chr7_4:60443286-60443305 Msa1167930:three_prime_UTR 35.0%
GCTAGCAGAATCATAATTGA+AGG - chr7_4:60443345-60443364 Msa1167930:three_prime_UTR 35.0%
!! GTTTTATGTGTTTGTTGGTG+AGG - chr7_4:60443499-60443518 Msa1167930:three_prime_UTR 35.0%
CTTTGCGTAGAAATGTTTGT+TGG - chr7_4:60443564-60443583 Msa1167930:intron 35.0%
TGTTTGTGCTATGAATTAGG+TGG - chr7_4:60443907-60443926 Msa1167930:intron 35.0%
! ATTTGAAACAGTGTTGTGAC+AGG + chr7_4:60444058-60444077 None:intergenic 35.0%
AAACCAGTGTTATAGCATAG+TGG - chr7_4:60444184-60444203 Msa1167930:three_prime_UTR 35.0%
AACCAGTGTTATAGCATAGT+GGG - chr7_4:60444185-60444204 Msa1167930:three_prime_UTR 35.0%
AACAGATGACTACTTGTATG+AGG - chr7_4:60444812-60444831 Msa1167930:three_prime_UTR 35.0%
CTGTATATGGTTTCCAATTG+CGG - chr7_4:60444905-60444924 Msa1167930:intron 35.0%
!!! AGTTTTAAAGGCCAAATGGT+TGG - chr7_4:60445659-60445678 Msa1167930:three_prime_UTR 35.0%
! TGTCACTCAATCTGTTTTCA+TGG - chr7_4:60445720-60445739 Msa1167930:three_prime_UTR 35.0%
! TTTGTTACTCATTGCTGACT+AGG - chr7_4:60445821-60445840 Msa1167930:CDS 35.0%
! TTGTTACTCATTGCTGACTA+GGG - chr7_4:60445822-60445841 Msa1167930:CDS 35.0%
ATTTACAGTGGTCTCCATAA+GGG + chr7_4:60446386-60446405 None:intergenic 35.0%
AATTTACAGTGGTCTCCATA+AGG + chr7_4:60446387-60446406 None:intergenic 35.0%
ATGGAGACCACTGTAAATTA+CGG - chr7_4:60446388-60446407 Msa1167930:intron 35.0%
CACTAAAAGGAAGACATGAT+TGG - chr7_4:60447181-60447200 Msa1167930:CDS 35.0%
GGAACATAGTCAACTTCTAA+TGG - chr7_4:60447202-60447221 Msa1167930:CDS 35.0%
! CACATATTGTATCTCCCTTT+TGG - chr7_4:60447366-60447385 Msa1167930:intron 35.0%
TAATGGAGAGAAAGCCAAAA+GGG + chr7_4:60447383-60447402 None:intergenic 35.0%
TTAATGGAGAGAAAGCCAAA+AGG + chr7_4:60447384-60447403 None:intergenic 35.0%
!! TTTGGCTTTCTCTCCATTAA+CGG - chr7_4:60447384-60447403 Msa1167930:intron 35.0%
CTGTAGTAATGTGAACATGA+TGG + chr7_4:60447432-60447451 None:intergenic 35.0%
!!! AAGGCACCTTTTAATTTTCC+TGG - chr7_4:60447504-60447523 Msa1167930:intron 35.0%
CTTTAATTGTGCTTCTGATG+AGG - chr7_4:60447820-60447839 Msa1167930:intron 35.0%
GAAGAAGGAACACGATAATA+TGG - chr7_4:60447918-60447937 Msa1167930:intron 35.0%
TCTTGAAAGATCCTCGTTAA+TGG + chr7_4:60448047-60448066 None:intergenic 35.0%
! TTCAAGTGCACCCATATTTT+TGG - chr7_4:60448360-60448379 Msa1167930:intron 35.0%
AGTACGATGGTGTTTAAACT+TGG + chr7_4:60448714-60448733 None:intergenic 35.0%
! TGATATGCAAGAAAGTACGA+TGG + chr7_4:60448727-60448746 None:intergenic 35.0%
!! TCTGTTTTTCATTAGCAGCT+TGG + chr7_4:60448799-60448818 None:intergenic 35.0%
AGAACAAGCACAAATGTTAG+AGG - chr7_4:60448822-60448841 Msa1167930:intron 35.0%
GAACAAGCACAAATGTTAGA+GGG - chr7_4:60448823-60448842 Msa1167930:intron 35.0%
ACAAATGTTAGAGGGACAAT+GGG - chr7_4:60448831-60448850 Msa1167930:intron 35.0%
!! ATATCCACTTTTGCAGTGAT+AGG + chr7_4:60448888-60448907 None:intergenic 35.0%
AAAGTGGATATCTACAGCTT+TGG - chr7_4:60448897-60448916 Msa1167930:CDS 35.0%
GTTCTATATTGGGCAAAAGA+GGG - chr7_4:60449020-60449039 Msa1167930:intron 35.0%
TTCTATATTGGGCAAAAGAG+GGG - chr7_4:60449021-60449040 Msa1167930:intron 35.0%
TAGGTTTGAGAGAATGACTA+TGG - chr7_4:60449094-60449113 Msa1167930:intron 35.0%
TTTGAGAGAATGACTATGGT+TGG - chr7_4:60449098-60449117 Msa1167930:intron 35.0%
AATAGATGGCCTAATAGTTG+GGG + chr7_4:60449147-60449166 None:intergenic 35.0%
CAATAGATGGCCTAATAGTT+GGG + chr7_4:60449148-60449167 None:intergenic 35.0%
TATTAGGCCATCTATTGCAA+AGG - chr7_4:60449151-60449170 Msa1167930:intron 35.0%
TTCTACACCTTTGCAATAGA+TGG + chr7_4:60449161-60449180 None:intergenic 35.0%
CTGATAGGAGAAAGAGAAAA+AGG + chr7_4:60449352-60449371 None:intergenic 35.0%
AACTGAGCAAACATACTTTG+TGG - chr7_4:60449390-60449409 Msa1167930:intron 35.0%
GACAACCTCTCACATATTTA+AGG + chr7_4:60449417-60449436 None:intergenic 35.0%
TGCACCGTGAAAAAGAAAAG+AGG - chr7_4:60443131-60443150 Msa1167930:three_prime_UTR 40.0%
CAGATTTCTGAGTTGCAAGT+AGG - chr7_4:60443167-60443186 Msa1167930:three_prime_UTR 40.0%
!! TTTTTCTTTGTGGGCTGAAC+AGG - chr7_4:60443470-60443489 Msa1167930:three_prime_UTR 40.0%
GAACAATTATACAATGGCCC+TGG - chr7_4:60443827-60443846 Msa1167930:intron 40.0%
GTGGTAAGCTAATCAACATG+AGG - chr7_4:60443926-60443945 Msa1167930:intron 40.0%
ATCCCACTATGCTATAACAC+TGG + chr7_4:60444190-60444209 None:intergenic 40.0%
GAAAATGGAACCAACCCTTT+AGG + chr7_4:60444532-60444551 None:intergenic 40.0%
!! GGTTGGTTCCATTTTCACAA+TGG - chr7_4:60444536-60444555 Msa1167930:intron 40.0%
CACATTGGCACATAACACAT+GGG + chr7_4:60444883-60444902 None:intergenic 40.0%
TCACATTGGCACATAACACA+TGG + chr7_4:60444884-60444903 None:intergenic 40.0%
GTGCCAATGTGATCTGTATA+TGG - chr7_4:60444892-60444911 Msa1167930:intron 40.0%
!! AAAATTAAGTTGACGCCGCA+AGG - chr7_4:60445233-60445252 Msa1167930:intron 40.0%
TTGCGATATTGCAGCTATTG+CGG + chr7_4:60445272-60445291 None:intergenic 40.0%
CAATAGCTGCAATATCGCAA+AGG - chr7_4:60445272-60445291 Msa1167930:intron 40.0%
AAACCATGGTTCTTTGTGCT+TGG - chr7_4:60445323-60445342 Msa1167930:intron 40.0%
GCACTGCAAATTTCCATACA+TGG + chr7_4:60445578-60445597 None:intergenic 40.0%
ATGGAAATTTGCAGTGCTGT+TGG - chr7_4:60445581-60445600 Msa1167930:intron 40.0%
AGTGGCCAAAATCAATACCT+TGG - chr7_4:60445628-60445647 Msa1167930:intron 40.0%
TTAAAGGCCAAATGGTTGGT+TGG - chr7_4:60445663-60445682 Msa1167930:three_prime_UTR 40.0%
! ACTGGTTTACAAGTGATGCA+GGG - chr7_4:60445686-60445705 Msa1167930:three_prime_UTR 40.0%
!!! ATGGTTTTATCCACTGCTGT+TGG - chr7_4:60445739-60445758 Msa1167930:three_prime_UTR 40.0%
TTAGTATGACTGTCAAGGCA+TGG + chr7_4:60446025-60446044 None:intergenic 40.0%
!! CATTAAAGAGTGTCAAGGCA+TGG + chr7_4:60446125-60446144 None:intergenic 40.0%
!! AAAAGGTATTTGTGCGAGGA+GGG - chr7_4:60446268-60446287 Msa1167930:intron 40.0%
TTGTACACAACCATCTCAAG+AGG + chr7_4:60446309-60446328 None:intergenic 40.0%
AGACTGAGCTCTGTAACAAA+TGG - chr7_4:60446343-60446362 Msa1167930:intron 40.0%
TGTAACAAATGGCAGGAAAC+TGG - chr7_4:60446354-60446373 Msa1167930:intron 40.0%
ACCACTGTAAATTACGGCAT+TGG - chr7_4:60446394-60446413 Msa1167930:intron 40.0%
CCACTGTAAATTACGGCATT+GGG - chr7_4:60446395-60446414 Msa1167930:intron 40.0%
CACTGTAAATTACGGCATTG+GGG - chr7_4:60446396-60446415 Msa1167930:intron 40.0%
!! AGACCTCAGTTTTGTAGCAT+GGG + chr7_4:60446444-60446463 None:intergenic 40.0%
AAATGGCATCTATGGCCATA+CGG + chr7_4:60446496-60446515 None:intergenic 40.0%
CTTGTTCAGTAAGTGCATGA+CGG + chr7_4:60446519-60446538 None:intergenic 40.0%
TAGCTAAAGACATACCCAAG+AGG + chr7_4:60446751-60446770 None:intergenic 40.0%
TGAGGAATGAAACTCACACA+CGG + chr7_4:60446980-60446999 None:intergenic 40.0%
! TTGGCTTTCTCTCCATTAAC+GGG - chr7_4:60447385-60447404 Msa1167930:intron 40.0%
TCTGAGTATGATGCTTAGAG+TGG - chr7_4:60447715-60447734 Msa1167930:intron 40.0%
GAAGGAACACGATAATATGG+TGG - chr7_4:60447921-60447940 Msa1167930:intron 40.0%
TATTCCTTCTATGAGATGCC+TGG - chr7_4:60447989-60448008 Msa1167930:intron 40.0%
CACAAATGTTAGAGGGACAA+TGG - chr7_4:60448830-60448849 Msa1167930:intron 40.0%
TAGAGGGACAATGGGATATT+TGG - chr7_4:60448839-60448858 Msa1167930:intron 40.0%
!! GAGTTGCATCAAGTTGAAGA+TGG - chr7_4:60448960-60448979 Msa1167930:intron 40.0%
! CAAGTTGAAGATGGAACAGA+AGG - chr7_4:60448969-60448988 Msa1167930:intron 40.0%
GGTTCTATATTGGGCAAAAG+AGG - chr7_4:60449019-60449038 Msa1167930:intron 40.0%
TGTCCTAATCCCCAACTATT+AGG - chr7_4:60449135-60449154 Msa1167930:intron 40.0%
GCAATAGATGGCCTAATAGT+TGG + chr7_4:60449149-60449168 None:intergenic 40.0%
AAGGTGTAGAATGCAGATGT+CGG - chr7_4:60449170-60449189 Msa1167930:intron 40.0%
AGTGTTCCACCATTGTTTGA+TGG - chr7_4:60449210-60449229 Msa1167930:intron 40.0%
GTGGTCCTTAAATATGTGAG+AGG - chr7_4:60449409-60449428 Msa1167930:intron 40.0%
GCAACTCAGAAATCTGTCAC+TGG + chr7_4:60443163-60443182 None:intergenic 45.0%
ACTAGAGTGGGAATTGGCAA+GGG - chr7_4:60443311-60443330 Msa1167930:three_prime_UTR 45.0%
!! AAATGAGTGCTCTGAGACAC+TGG + chr7_4:60444035-60444054 None:intergenic 45.0%
CTCAAAGTCAGTCGGTTAGA+AGG - chr7_4:60444467-60444486 Msa1167930:three_prime_UTR 45.0%
AAGTCAGTCGGTTAGAAGGA+AGG - chr7_4:60444471-60444490 Msa1167930:three_prime_UTR 45.0%
CGTGATTACAGATAATGCCG+TGG + chr7_4:60444937-60444956 None:intergenic 45.0%
TTGGGTGCAGAAAACTACAG+AGG - chr7_4:60445027-60445046 Msa1167930:intron 45.0%
TTAAAATGCAGCCGCGATTG+CGG + chr7_4:60445304-60445323 None:intergenic 45.0%
!!! GCGGCTGCATTTTAAAACCA+TGG - chr7_4:60445309-60445328 Msa1167930:intron 45.0%
ACACCAAGCACAAAGAACCA+TGG + chr7_4:60445329-60445348 None:intergenic 45.0%
! ATTTGCAGTGCTGTTGGTAG+TGG - chr7_4:60445587-60445606 Msa1167930:intron 45.0%
AACCAGTCCAACCAACCATT+TGG + chr7_4:60445673-60445692 None:intergenic 45.0%
!! GACTGGTTTACAAGTGATGC+AGG - chr7_4:60445685-60445704 Msa1167930:three_prime_UTR 45.0%
CTGGTTTACAAGTGATGCAG+GGG - chr7_4:60445687-60445706 Msa1167930:three_prime_UTR 45.0%
TGTTGCTATGCTGCAGCAAA+AGG - chr7_4:60446251-60446270 Msa1167930:intron 45.0%
!! CAGCAAAAGGTATTTGTGCG+AGG - chr7_4:60446264-60446283 Msa1167930:intron 45.0%
!! CAAAAGGTATTTGTGCGAGG+AGG - chr7_4:60446267-60446286 Msa1167930:intron 45.0%
!! AAAGGTATTTGTGCGAGGAG+GGG - chr7_4:60446269-60446288 Msa1167930:intron 45.0%
TGAGATGGTTGTGTACAACC+AGG - chr7_4:60446311-60446330 Msa1167930:intron 45.0%
GAGATGGTTGTGTACAACCA+GGG - chr7_4:60446312-60446331 Msa1167930:intron 45.0%
AGATGGTTGTGTACAACCAG+GGG - chr7_4:60446313-60446332 Msa1167930:intron 45.0%
TGAGCTCTGTAACAAATGGC+AGG - chr7_4:60446347-60446366 Msa1167930:intron 45.0%
CCCAATGCCGTAATTTACAG+TGG + chr7_4:60446398-60446417 None:intergenic 45.0%
!! CAGACCTCAGTTTTGTAGCA+TGG + chr7_4:60446445-60446464 None:intergenic 45.0%
AATGGCATCTATGGCCATAC+GGG + chr7_4:60446495-60446514 None:intergenic 45.0%
! CATGACGGAAATGGCATCTA+TGG + chr7_4:60446504-60446523 None:intergenic 45.0%
! CAGTAAGTGCATGACGGAAA+TGG + chr7_4:60446513-60446532 None:intergenic 45.0%
GAGAACATTGCAGCAGCATA+AGG + chr7_4:60446935-60446954 None:intergenic 45.0%
GAACATGATACCTGCTCACA+GGG + chr7_4:60447124-60447143 None:intergenic 45.0%
TGAACATGATACCTGCTCAC+AGG + chr7_4:60447125-60447144 None:intergenic 45.0%
ACTTTCCACTCACCCGTTAA+TGG + chr7_4:60447400-60447419 None:intergenic 45.0%
AATGCCAGGCATCTCATAGA+AGG + chr7_4:60447996-60448015 None:intergenic 45.0%
AGATCCTCGTTAATGGCAAC+AGG + chr7_4:60448040-60448059 None:intergenic 45.0%
! GATAAAGAGGTGTGACAGCA+AGG + chr7_4:60448295-60448314 None:intergenic 45.0%
TCACTGTCGAGAAAGATGCT+CGG + chr7_4:60448462-60448481 None:intergenic 45.0%
TGGGATATTTGGCACCAGAA+TGG - chr7_4:60448850-60448869 Msa1167930:intron 45.0%
!! GGTGCATTTTTGAGCCATTC+TGG + chr7_4:60448867-60448886 None:intergenic 45.0%
TGCACCTATCACTGCAAAAG+TGG - chr7_4:60448881-60448900 Msa1167930:CDS 45.0%
GTTGAAGATGGAACAGAAGG+CGG - chr7_4:60448972-60448991 Msa1167930:intron 45.0%
GAATGACTATGGTTGGACTG+TGG - chr7_4:60449105-60449124 Msa1167930:intron 45.0%
TGGCCTAATAGTTGGGGATT+AGG + chr7_4:60449141-60449160 None:intergenic 45.0%
TGTAGAATGCAGATGTCGGA+AGG - chr7_4:60449174-60449193 Msa1167930:intron 45.0%
!!! ATTTACTATTATTTATTTTA+TGG + chr7_4:60445195-60445214 None:intergenic 5.0%
AGGAGAGAGGACACTAGAGT+GGG - chr7_4:60443299-60443318 Msa1167930:three_prime_UTR 50.0%
GAGGACACTAGAGTGGGAAT+TGG - chr7_4:60443305-60443324 Msa1167930:three_prime_UTR 50.0%
CACTAGAGTGGGAATTGGCA+AGG - chr7_4:60443310-60443329 Msa1167930:three_prime_UTR 50.0%
TCCAATTGCGGATGCTACCA+CGG - chr7_4:60444917-60444936 Msa1167930:intron 50.0%
GGTGTGTATTGTCGTCCTTG+CGG + chr7_4:60445251-60445270 None:intergenic 50.0%
GAAAGCTACACCAACAGCAG+TGG + chr7_4:60445752-60445771 None:intergenic 50.0%
ATGACTGTCAAGGCATGGCA+AGG + chr7_4:60446020-60446039 None:intergenic 50.0%
! AAGGTATTTGTGCGAGGAGG+GGG - chr7_4:60446270-60446289 Msa1167930:intron 50.0%
AGAGGAAGAGCCTCTTGAGA+TGG - chr7_4:60446296-60446315 Msa1167930:intron 50.0%
GAAACTGGCACATGCCCTTA+TGG - chr7_4:60446369-60446388 Msa1167930:intron 50.0%
!! CAGTTTTGTAGCATGGGTGG+CGG + chr7_4:60446438-60446457 None:intergenic 50.0%
!! CCTCAGTTTTGTAGCATGGG+TGG + chr7_4:60446441-60446460 None:intergenic 50.0%
CCACCCATGCTACAAAACTG+AGG - chr7_4:60446438-60446457 Msa1167930:intron 50.0%
GCTACAAAACTGAGGTCTGC+AGG - chr7_4:60446446-60446465 Msa1167930:intron 50.0%
CAAAACTGAGGTCTGCAGGA+TGG - chr7_4:60446450-60446469 Msa1167930:intron 50.0%
ACAAGATGATCCCTGTGAGC+AGG - chr7_4:60447111-60447130 Msa1167930:intron 50.0%
TTCTTTCAGGGAAGGGCTCA+TGG - chr7_4:60447317-60447336 Msa1167930:intron 50.0%
! TCTCTCCATTAACGGGTGAG+TGG - chr7_4:60447392-60447411 Msa1167930:intron 50.0%
! GGCATTTGGCTCATAATGCC+AGG + chr7_4:60448010-60448029 None:intergenic 50.0%
TTAATGGCAACAGGCAGTGG+CGG + chr7_4:60448031-60448050 None:intergenic 50.0%
TCGTTAATGGCAACAGGCAG+TGG + chr7_4:60448034-60448053 None:intergenic 50.0%
ACTGCCTGTTGCCATTAACG+AGG - chr7_4:60448033-60448052 Msa1167930:intron 50.0%
GAGGAGAGAGGACACTAGAG+TGG - chr7_4:60443298-60443317 Msa1167930:three_prime_UTR 55.0%
! GGCCAAATGGTTGGTTGGAC+TGG - chr7_4:60445668-60445687 Msa1167930:three_prime_UTR 55.0%
AGGTATTTGTGCGAGGAGGG+GGG - chr7_4:60446271-60446290 Msa1167930:intron 55.0%
GCTCAGTCTTGAACATCCCC+TGG + chr7_4:60446332-60446351 None:intergenic 55.0%
!! AGCATGGGTGGCGGATCATT+GGG + chr7_4:60446429-60446448 None:intergenic 55.0%
!! TAGCATGGGTGGCGGATCAT+TGG + chr7_4:60446430-60446449 None:intergenic 55.0%
TCTGCAGGATGGTCCTTGCT+GGG - chr7_4:60446461-60446480 Msa1167930:intron 55.0%
AGGGCTCATGGTTGCATCTC+AGG - chr7_4:60447329-60447348 Msa1167930:intron 55.0%
! CGAGAAAGATGCTCGGTGAG+TGG + chr7_4:60448455-60448474 None:intergenic 55.0%
GCCGTGGTAGCATCCGCAAT+TGG + chr7_4:60444921-60444940 None:intergenic 60.0%
TGCACCCAATGCCCTCGTTG+CGG + chr7_4:60445016-60445035 None:intergenic 60.0%
AAAGGCAGCGACCGCAATCG+CGG - chr7_4:60445290-60445309 Msa1167930:intron 60.0%
CTGTCAAGGCATGGCAAGGC+AGG + chr7_4:60446016-60446035 None:intergenic 60.0%
GTCTGCAGGATGGTCCTTGC+TGG - chr7_4:60446460-60446479 Msa1167930:intron 60.0%
CTGCAGGATGGTCCTTGCTG+GGG - chr7_4:60446462-60446481 Msa1167930:intron 60.0%
ACGGGAACACAACCCCAGCA+AGG + chr7_4:60446477-60446496 None:intergenic 60.0%
GCTGGGGTTGTGTTCCCGTA+TGG - chr7_4:60446478-60446497 Msa1167930:intron 60.0%
CAACAGGCAGTGGCGGCATT+TGG + chr7_4:60448024-60448043 None:intergenic 60.0%
! GATGCTCGGTGAGTGGTGAC+AGG + chr7_4:60448448-60448467 None:intergenic 60.0%
!! AGCGCCGCAACGAGGGCATT+GGG - chr7_4:60445009-60445028 Msa1167930:intron 65.0%
TGTGCGAGGAGGGGGGAAAG+AGG - chr7_4:60446278-60446297 Msa1167930:intron 65.0%
ACGTCGCAGCGCCGCAACGA+GGG - chr7_4:60445002-60445021 Msa1167930:intron 70.0%
! CAGCGCCGCAACGAGGGCAT+TGG - chr7_4:60445008-60445027 Msa1167930:intron 70.0%
CTCGTTGCGGCGCTGCGACG+TGG + chr7_4:60445003-60445022 None:intergenic 75.0%
CACGTCGCAGCGCCGCAACG+AGG - chr7_4:60445001-60445020 Msa1167930:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 60442735 60449482 60442735 ID=Msa1167930;Name=Msa1167930
chr7_4 mRNA 60442735 60449482 60442735 ID=Msa1167930-mRNA-1;Parent=Msa1167930;Name=Msa1167930-mRNA-1;_AED=0.28;_eAED=0.32;_QI=0|0.5|0.61|0.84|0.58|0.61|13|1521|148
chr7_4 exon 60442735 60443537 60442735 ID=Msa1167930-mRNA-1:exon:18935;Parent=Msa1167930-mRNA-1
chr7_4 exon 60444127 60444516 60444127 ID=Msa1167930-mRNA-1:exon:18934;Parent=Msa1167930-mRNA-1
chr7_4 exon 60444660 60444730 60444660 ID=Msa1167930-mRNA-1:exon:18933;Parent=Msa1167930-mRNA-1
chr7_4 exon 60444811 60444891 60444811 ID=Msa1167930-mRNA-1:exon:18932;Parent=Msa1167930-mRNA-1
chr7_4 exon 60445085 60445126 60445085 ID=Msa1167930-mRNA-1:exon:18931;Parent=Msa1167930-mRNA-1
chr7_4 exon 60445462 60445494 60445462 ID=Msa1167930-mRNA-1:exon:18930;Parent=Msa1167930-mRNA-1
chr7_4 exon 60445658 60445950 60445658 ID=Msa1167930-mRNA-1:exon:18929;Parent=Msa1167930-mRNA-1
chr7_4 exon 60446887 60446975 60446887 ID=Msa1167930-mRNA-1:exon:18928;Parent=Msa1167930-mRNA-1
chr7_4 exon 60447169 60447241 60447169 ID=Msa1167930-mRNA-1:exon:18927;Parent=Msa1167930-mRNA-1
chr7_4 exon 60448596 60448603 60448596 ID=Msa1167930-mRNA-1:exon:18926;Parent=Msa1167930-mRNA-1
chr7_4 exon 60448851 60448919 60448851 ID=Msa1167930-mRNA-1:exon:18925;Parent=Msa1167930-mRNA-1
chr7_4 exon 60449383 60449391 60449383 ID=Msa1167930-mRNA-1:exon:18924;Parent=Msa1167930-mRNA-1
chr7_4 exon 60449476 60449482 60449476 ID=Msa1167930-mRNA-1:exon:18923;Parent=Msa1167930-mRNA-1
chr7_4 CDS 60449476 60449482 60449476 ID=Msa1167930-mRNA-1:cds;Parent=Msa1167930-mRNA-1
chr7_4 CDS 60449383 60449391 60449383 ID=Msa1167930-mRNA-1:cds;Parent=Msa1167930-mRNA-1
chr7_4 CDS 60448851 60448919 60448851 ID=Msa1167930-mRNA-1:cds;Parent=Msa1167930-mRNA-1
chr7_4 CDS 60448596 60448603 60448596 ID=Msa1167930-mRNA-1:cds;Parent=Msa1167930-mRNA-1
chr7_4 CDS 60447169 60447241 60447169 ID=Msa1167930-mRNA-1:cds;Parent=Msa1167930-mRNA-1
chr7_4 CDS 60446887 60446975 60446887 ID=Msa1167930-mRNA-1:cds;Parent=Msa1167930-mRNA-1
chr7_4 CDS 60445759 60445950 60445759 ID=Msa1167930-mRNA-1:cds;Parent=Msa1167930-mRNA-1
chr7_4 three_prime_UTR 60445658 60445758 60445658 ID=Msa1167930-mRNA-1:three_prime_utr;Parent=Msa1167930-mRNA-1
chr7_4 three_prime_UTR 60445462 60445494 60445462 ID=Msa1167930-mRNA-1:three_prime_utr;Parent=Msa1167930-mRNA-1
chr7_4 three_prime_UTR 60445085 60445126 60445085 ID=Msa1167930-mRNA-1:three_prime_utr;Parent=Msa1167930-mRNA-1
chr7_4 three_prime_UTR 60444811 60444891 60444811 ID=Msa1167930-mRNA-1:three_prime_utr;Parent=Msa1167930-mRNA-1
chr7_4 three_prime_UTR 60444660 60444730 60444660 ID=Msa1167930-mRNA-1:three_prime_utr;Parent=Msa1167930-mRNA-1
chr7_4 three_prime_UTR 60444127 60444516 60444127 ID=Msa1167930-mRNA-1:three_prime_utr;Parent=Msa1167930-mRNA-1
chr7_4 three_prime_UTR 60442735 60443537 60442735 ID=Msa1167930-mRNA-1:three_prime_utr;Parent=Msa1167930-mRNA-1
Gene Sequence

>Msa1167930

ATGGTAAATTGTGTAGGAGGAGAGAGGACACTAGAGTGGGAATTGGCAAGGGTAAAAGTTTCTGCTAGCAGAATCATAATTGAAGACTTGAAATGTGATCGTAAATCACATTTGAAACCACGTCGCAGCGCCGCAACGAGGGCATTGGGTGCAGAAAACTACAGAGTTGACGCCGCAAGGACGACAATACACACCGCAATAGCTGCAATATCGCAAAGGCAGCGACCGCAATCGCGGCTGCATTTTAAAACCATGCAAAAGGTATTTGTGCGAGGAGGGGGGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTACAACCAGGGGATGTTCAAGACTGAGCTCTGTAACAAATGGCAGGAAACTGGCACATGCCCTTATGGAGACCACTGTAAATTACGGCATTGGGGAGCTTCGCCCAATGATCCGCCACCCATGCTACAAAACTGA

Protein sequence

>Msa1167930

MVNCVGGERTLEWELARVKVSASRIIIEDLKCDRKSHLKPRRSAATRALGAENYRVDAARTTIHTAIAAISQRQRPQSRLHFKTMQKVFVRGGGKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCKLRHWGASPNDPPPMLQN*