Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174070 | A0A2K3LBZ3 | 87.166 | 187 | 24 | 0 | 1 | 187 | 1 | 187 | 3.85e-117 | 341 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0468250 | Msa1174070 | 0.810300 | 1.234353e-50 | -8.615850e-47 |
| Msa0305330 | Msa1174070 | 0.804997 | 1.651332e-49 | -8.615850e-47 |
| Msa0358400 | Msa1174070 | 0.815751 | 7.872667e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174070 | MtrunA17_Chr8g0337071 | 98.266 | 173 | 3 | 0 | 1 | 173 | 1 | 173 | 2.08e-120 | 352 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174070 | AT1G50120.1 | 50.867 | 173 | 81 | 2 | 1 | 169 | 1 | 173 | 1.21e-56 | 188 |
| Msa1174070 | AT1G50120.2 | 49.718 | 177 | 85 | 2 | 1 | 173 | 1 | 177 | 1.52e-56 | 188 |
Find 40 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTAGGGGTATTGAGAAAT+TGG | 0.233780 | 8_1:-5129186 | Msa1174070:CDS |
| GGGTGGCTAATTCTGGAAAA+TGG | 0.251080 | 8_1:-5127998 | Msa1174070:CDS |
| AACTGGAGGGTGGCTAATTC+TGG | 0.253947 | 8_1:-5128005 | Msa1174070:CDS |
| AGGTGGAGATTCAGGTTTAT+TGG | 0.277049 | 8_1:-5129363 | Msa1174070:CDS |
| CCACAGAAAAGCAATGTTAA+AGG | 0.278986 | 8_1:-5129405 | Msa1174070:exon |
| AACAAACGATGTTACTGATT+TGG | 0.314504 | 8_1:-5127957 | Msa1174070:CDS |
| ATCTGAATTGTAATAATAAC+TGG | 0.340197 | 8_1:+5129260 | None:intergenic |
| CAGATCTCTAATCCTTCAAA+TGG | 0.350150 | 8_1:-5129242 | Msa1174070:CDS |
| TTGCGCCGGCATTAATAATC+TGG | 0.356864 | 8_1:+5128249 | None:intergenic |
| ATCTGGTTTGCTACTAAGAT+TGG | 0.363827 | 8_1:+5128266 | None:intergenic |
| TATGTTAGAAGTGCAATAAC+TGG | 0.396529 | 8_1:-5128022 | Msa1174070:CDS |
| CACAGAAAAGCAATGTTAAA+GGG | 0.424518 | 8_1:-5129404 | Msa1174070:exon |
| CATTATTCCACCATCGTACA+AGG | 0.427007 | 8_1:-5128068 | Msa1174070:CDS |
| TTGAGAAATTGGATACTCAA+TGG | 0.465738 | 8_1:-5129175 | Msa1174070:CDS |
| TGCTACTAAGATTGGTGTTG+AGG | 0.475054 | 8_1:+5128274 | None:intergenic |
| GAGTGTTCGTTCTTCTCAAA+CGG | 0.478748 | 8_1:+5129579 | None:intergenic |
| AAATCAGTAACATCGTTTGT+TGG | 0.479623 | 8_1:+5127959 | None:intergenic |
| TCAGTTTCAAGCTTCAATGT+AGG | 0.487202 | 8_1:+5129308 | None:intergenic |
| AAAAGTTTAAGCTGAGCTAA+AGG | 0.489722 | 8_1:+5127830 | None:intergenic |
| GCTACTCAGAAACCGTTGCC+TGG | 0.499768 | 8_1:-5129149 | Msa1174070:CDS |
| CTTTGTCTTGAACCAGGCAA+CGG | 0.519593 | 8_1:+5129137 | None:intergenic |
| CCTCGTCTTTGTCTTGAACC+AGG | 0.520432 | 8_1:+5129131 | None:intergenic |
| CATACATGATTTGCTTGCGC+CGG | 0.520706 | 8_1:+5128235 | None:intergenic |
| GGTGGCTAATTCTGGAAAAT+GGG | 0.523808 | 8_1:-5127997 | Msa1174070:CDS |
| AACGATGTTACTGATTTGGT+TGG | 0.526967 | 8_1:-5127953 | Msa1174070:CDS |
| AGATCTCTAATCCTTCAAAT+GGG | 0.553985 | 8_1:-5129241 | Msa1174070:CDS |
| ATGTTTGAACCCTTGTACGA+TGG | 0.556505 | 8_1:+5128058 | None:intergenic |
| GCAAACCAGATTATTAATGC+CGG | 0.577685 | 8_1:-5128254 | Msa1174070:CDS |
| TCTACAGCTCAAATCATCAC+TGG | 0.580533 | 8_1:-5129558 | Msa1174070:intron |
| TACGATGGTGGAATAATGCT+AGG | 0.602275 | 8_1:+5128073 | None:intergenic |
| TTTGAACCCTTGTACGATGG+TGG | 0.606297 | 8_1:+5128061 | None:intergenic |
| GTTAGAAGTGCAATAACTGG+AGG | 0.618102 | 8_1:-5128019 | Msa1174070:CDS |
| GTAATAATAACTGGATCACC+AGG | 0.624700 | 8_1:+5129269 | None:intergenic |
| ATTATTCCACCATCGTACAA+GGG | 0.633653 | 8_1:-5128067 | Msa1174070:CDS |
| TTAGAAGTGCAATAACTGGA+GGG | 0.634859 | 8_1:-5128018 | Msa1174070:CDS |
| TAAGCTGAGCTAAAGGCACA+TGG | 0.665853 | 8_1:+5127837 | None:intergenic |
| GATAAACAAGTTTATAGACC+TGG | 0.678211 | 8_1:-5129287 | Msa1174070:CDS |
| CCTGGTTCAAGACAAAGACG+AGG | 0.692621 | 8_1:-5129131 | Msa1174070:intron |
| GAAGTGCAATAACTGGAGGG+TGG | 0.701199 | 8_1:-5128015 | Msa1174070:CDS |
| GCTGAGCTAAAGGCACATGG+TGG | 0.726017 | 8_1:+5127840 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATGTTAAATACTGTT+CGG | + | chr8_1:5128869-5128888 | None:intergenic | 15.0% |
| !!! | GTTATTTGAAATTTTGAAAA+TGG | - | chr8_1:5128918-5128937 | Msa1174070:intron | 15.0% |
| !! | TAATTATGTTAAATACTGTT+CGG | + | chr8_1:5128869-5128888 | None:intergenic | 15.0% |
| !!! | GTTATTTGAAATTTTGAAAA+TGG | - | chr8_1:5128918-5128937 | Msa1174070:intron | 15.0% |
| !!! | AATGAAAAATTGGTTTGAAA+GGG | + | chr8_1:5127892-5127911 | None:intergenic | 20.0% |
| !! | ATCTGAATTGTAATAATAAC+TGG | + | chr8_1:5128138-5128157 | None:intergenic | 20.0% |
| !!! | TTTAGTTTCATTTTGTGTTA+TGG | - | chr8_1:5128625-5128644 | Msa1174070:intron | 20.0% |
| !!! | AATAATTTGTTTATCGAAAC+AGG | - | chr8_1:5128672-5128691 | Msa1174070:intron | 20.0% |
| !!! | ATAATTTGTTTATCGAAACA+GGG | - | chr8_1:5128673-5128692 | Msa1174070:intron | 20.0% |
| !!! | TATTTTTATGCTGAATTTTC+TGG | - | chr8_1:5129516-5129535 | Msa1174070:intron | 20.0% |
| !!! | AATGAAAAATTGGTTTGAAA+GGG | + | chr8_1:5127892-5127911 | None:intergenic | 20.0% |
| !! | ATCTGAATTGTAATAATAAC+TGG | + | chr8_1:5128138-5128157 | None:intergenic | 20.0% |
| !!! | TTTAGTTTCATTTTGTGTTA+TGG | - | chr8_1:5128625-5128644 | Msa1174070:intron | 20.0% |
| !!! | AATAATTTGTTTATCGAAAC+AGG | - | chr8_1:5128672-5128691 | Msa1174070:intron | 20.0% |
| !!! | ATAATTTGTTTATCGAAACA+GGG | - | chr8_1:5128673-5128692 | Msa1174070:intron | 20.0% |
| !!! | TATTTTTATGCTGAATTTTC+TGG | - | chr8_1:5129516-5129535 | Msa1174070:intron | 20.0% |
| !!! | GAATGAAAAATTGGTTTGAA+AGG | + | chr8_1:5127893-5127912 | None:intergenic | 25.0% |
| ! | GTGAAATTGGAATGAAAAAT+TGG | + | chr8_1:5127902-5127921 | None:intergenic | 25.0% |
| ! | GTGATTAATGAATGTGAAAT+TGG | + | chr8_1:5127915-5127934 | None:intergenic | 25.0% |
| ! | TTCTACAAAAAGCGATTAAT+GGG | + | chr8_1:5127967-5127986 | None:intergenic | 25.0% |
| ! | TTTCTACAAAAAGCGATTAA+TGG | + | chr8_1:5127968-5127987 | None:intergenic | 25.0% |
| !!! | AAGGGAAAATTATCGTTTTT+CGG | - | chr8_1:5128009-5128028 | Msa1174070:CDS | 25.0% |
| ! | TCAAATAAGTCAAACTAAAC+AGG | + | chr8_1:5128461-5128480 | None:intergenic | 25.0% |
| ! | GCATTATTCATAAGTTGTTT+AGG | - | chr8_1:5128493-5128512 | Msa1174070:intron | 25.0% |
| ! | TTTGTGTTATGGAAATAGTT+AGG | - | chr8_1:5128636-5128655 | Msa1174070:intron | 25.0% |
| ! | TTAATAGGGTTCTATATTCA+GGG | + | chr8_1:5128731-5128750 | None:intergenic | 25.0% |
| ! | CACTAATTATCTCTCATAAA+AGG | + | chr8_1:5128827-5128846 | None:intergenic | 25.0% |
| !!! | GAATTTTGCATTTTTGTTTC+AGG | - | chr8_1:5129078-5129097 | Msa1174070:intron | 25.0% |
| ! | AAATCATTTAGTGTAGAACT+TGG | + | chr8_1:5129186-5129205 | None:intergenic | 25.0% |
| !!! | GAATGAAAAATTGGTTTGAA+AGG | + | chr8_1:5127893-5127912 | None:intergenic | 25.0% |
| ! | GTGAAATTGGAATGAAAAAT+TGG | + | chr8_1:5127902-5127921 | None:intergenic | 25.0% |
| ! | GTGATTAATGAATGTGAAAT+TGG | + | chr8_1:5127915-5127934 | None:intergenic | 25.0% |
| ! | TTCTACAAAAAGCGATTAAT+GGG | + | chr8_1:5127967-5127986 | None:intergenic | 25.0% |
| ! | TTTCTACAAAAAGCGATTAA+TGG | + | chr8_1:5127968-5127987 | None:intergenic | 25.0% |
| !!! | AAGGGAAAATTATCGTTTTT+CGG | - | chr8_1:5128009-5128028 | Msa1174070:CDS | 25.0% |
| ! | TCAAATAAGTCAAACTAAAC+AGG | + | chr8_1:5128461-5128480 | None:intergenic | 25.0% |
| ! | GCATTATTCATAAGTTGTTT+AGG | - | chr8_1:5128493-5128512 | Msa1174070:intron | 25.0% |
| ! | TTTGTGTTATGGAAATAGTT+AGG | - | chr8_1:5128636-5128655 | Msa1174070:intron | 25.0% |
| ! | TTAATAGGGTTCTATATTCA+GGG | + | chr8_1:5128731-5128750 | None:intergenic | 25.0% |
| ! | CACTAATTATCTCTCATAAA+AGG | + | chr8_1:5128827-5128846 | None:intergenic | 25.0% |
| !!! | GAATTTTGCATTTTTGTTTC+AGG | - | chr8_1:5129078-5129097 | Msa1174070:intron | 25.0% |
| ! | AAATCATTTAGTGTAGAACT+TGG | + | chr8_1:5129186-5129205 | None:intergenic | 25.0% |
| CACAGAAAAGCAATGTTAAA+GGG | - | chr8_1:5127991-5128010 | Msa1174070:CDS | 30.0% | |
| GATAAACAAGTTTATAGACC+TGG | - | chr8_1:5128108-5128127 | Msa1174070:intron | 30.0% | |
| AGATCTCTAATCCTTCAAAT+GGG | - | chr8_1:5128154-5128173 | Msa1174070:intron | 30.0% | |
| !! | AAAAAAGAGTACCCATTTGA+AGG | + | chr8_1:5128168-5128187 | None:intergenic | 30.0% |
| !!! | AAATGGGTACTCTTTTTTGA+TGG | - | chr8_1:5128170-5128189 | Msa1174070:intron | 30.0% |
| !!! | AAAGACTCAGTTTTGAGATT+AGG | - | chr8_1:5128193-5128212 | Msa1174070:intron | 30.0% |
| !!! | AAGACTCAGTTTTGAGATTA+GGG | - | chr8_1:5128194-5128213 | Msa1174070:intron | 30.0% |
| TTGAGAAATTGGATACTCAA+TGG | - | chr8_1:5128220-5128239 | Msa1174070:intron | 30.0% | |
| GTTAATAGGGTTCTATATTC+AGG | + | chr8_1:5128732-5128751 | None:intergenic | 30.0% | |
| CTCTCGTGATTTAGTTAATA+GGG | + | chr8_1:5128745-5128764 | None:intergenic | 30.0% | |
| ACTCTCGTGATTTAGTTAAT+AGG | + | chr8_1:5128746-5128765 | None:intergenic | 30.0% | |
| ATCACGAGAGTTGAAAAAAT+TGG | - | chr8_1:5128755-5128774 | Msa1174070:intron | 30.0% | |
| !! | TGCTTTAATTTTGAAAGCAC+TGG | - | chr8_1:5129024-5129043 | Msa1174070:intron | 30.0% |
| ! | TATGTTAGAAGTGCAATAAC+TGG | - | chr8_1:5129373-5129392 | Msa1174070:CDS | 30.0% |
| AAATCAGTAACATCGTTTGT+TGG | + | chr8_1:5129439-5129458 | None:intergenic | 30.0% | |
| ! | AACAAACGATGTTACTGATT+TGG | - | chr8_1:5129438-5129457 | Msa1174070:intron | 30.0% |
| AAAAGTTTAAGCTGAGCTAA+AGG | + | chr8_1:5129568-5129587 | None:intergenic | 30.0% | |
| ! | TTAGCTCAGCTTAAACTTTT+AGG | - | chr8_1:5129568-5129587 | Msa1174070:five_prime_UTR | 30.0% |
| CACAGAAAAGCAATGTTAAA+GGG | - | chr8_1:5127991-5128010 | Msa1174070:CDS | 30.0% | |
| GATAAACAAGTTTATAGACC+TGG | - | chr8_1:5128108-5128127 | Msa1174070:intron | 30.0% | |
| AGATCTCTAATCCTTCAAAT+GGG | - | chr8_1:5128154-5128173 | Msa1174070:intron | 30.0% | |
| !! | AAAAAAGAGTACCCATTTGA+AGG | + | chr8_1:5128168-5128187 | None:intergenic | 30.0% |
| !!! | AAATGGGTACTCTTTTTTGA+TGG | - | chr8_1:5128170-5128189 | Msa1174070:intron | 30.0% |
| !!! | AAAGACTCAGTTTTGAGATT+AGG | - | chr8_1:5128193-5128212 | Msa1174070:intron | 30.0% |
| !!! | AAGACTCAGTTTTGAGATTA+GGG | - | chr8_1:5128194-5128213 | Msa1174070:intron | 30.0% |
| TTGAGAAATTGGATACTCAA+TGG | - | chr8_1:5128220-5128239 | Msa1174070:intron | 30.0% | |
| GTTAATAGGGTTCTATATTC+AGG | + | chr8_1:5128732-5128751 | None:intergenic | 30.0% | |
| CTCTCGTGATTTAGTTAATA+GGG | + | chr8_1:5128745-5128764 | None:intergenic | 30.0% | |
| ACTCTCGTGATTTAGTTAAT+AGG | + | chr8_1:5128746-5128765 | None:intergenic | 30.0% | |
| ATCACGAGAGTTGAAAAAAT+TGG | - | chr8_1:5128755-5128774 | Msa1174070:intron | 30.0% | |
| !! | TGCTTTAATTTTGAAAGCAC+TGG | - | chr8_1:5129024-5129043 | Msa1174070:intron | 30.0% |
| ! | TATGTTAGAAGTGCAATAAC+TGG | - | chr8_1:5129373-5129392 | Msa1174070:CDS | 30.0% |
| AAATCAGTAACATCGTTTGT+TGG | + | chr8_1:5129439-5129458 | None:intergenic | 30.0% | |
| ! | AACAAACGATGTTACTGATT+TGG | - | chr8_1:5129438-5129457 | Msa1174070:intron | 30.0% |
| AAAAGTTTAAGCTGAGCTAA+AGG | + | chr8_1:5129568-5129587 | None:intergenic | 30.0% | |
| ! | TTAGCTCAGCTTAAACTTTT+AGG | - | chr8_1:5129568-5129587 | Msa1174070:five_prime_UTR | 30.0% |
| TGAAAGGGAAATTGAAGGAA+TGG | + | chr8_1:5127877-5127896 | None:intergenic | 35.0% | |
| TGGTTTGAAAGGGAAATTGA+AGG | + | chr8_1:5127882-5127901 | None:intergenic | 35.0% | |
| !! | CCTTTAACATTGCTTTTCTG+TGG | + | chr8_1:5127993-5128012 | None:intergenic | 35.0% |
| CCACAGAAAAGCAATGTTAA+AGG | - | chr8_1:5127990-5128009 | Msa1174070:CDS | 35.0% | |
| !! | GGAAAATTATCGTTTTTCGG+AGG | - | chr8_1:5128012-5128031 | Msa1174070:CDS | 35.0% |
| !! | AAATTATCGTTTTTCGGAGG+TGG | - | chr8_1:5128015-5128034 | Msa1174070:CDS | 35.0% |
| TCAGTTTCAAGCTTCAATGT+AGG | + | chr8_1:5128090-5128109 | None:intergenic | 35.0% | |
| GTAATAATAACTGGATCACC+AGG | + | chr8_1:5128129-5128148 | None:intergenic | 35.0% | |
| CAGATCTCTAATCCTTCAAA+TGG | - | chr8_1:5128153-5128172 | Msa1174070:intron | 35.0% | |
| !!! | AGACTCAGTTTTGAGATTAG+GGG | - | chr8_1:5128195-5128214 | Msa1174070:intron | 35.0% |
| !! | GATTAGGGGTATTGAGAAAT+TGG | - | chr8_1:5128209-5128228 | Msa1174070:intron | 35.0% |
| CTTGAATCATTACACTGACA+CGG | - | chr8_1:5128308-5128327 | Msa1174070:intron | 35.0% | |
| TGATGGAATATGTGTCTAGT+CGG | + | chr8_1:5128416-5128435 | None:intergenic | 35.0% | |
| !! | CATAACCAGCTGTTTTCATA+AGG | + | chr8_1:5128591-5128610 | None:intergenic | 35.0% |
| TCTTCAAGAGTCCTATGTTT+AGG | - | chr8_1:5128966-5128985 | Msa1174070:intron | 35.0% | |
| CTTCAAGAGTCCTATGTTTA+GGG | - | chr8_1:5128967-5128986 | Msa1174070:intron | 35.0% | |
| GACGGATGTAGTAGTTATTT+GGG | - | chr8_1:5128989-5129008 | Msa1174070:intron | 35.0% | |
| !! | ATCTGGTTTGCTACTAAGAT+TGG | + | chr8_1:5129132-5129151 | None:intergenic | 35.0% |
| GCAAACCAGATTATTAATGC+CGG | - | chr8_1:5129141-5129160 | Msa1174070:CDS | 35.0% | |
| ATTATTCCACCATCGTACAA+GGG | - | chr8_1:5129328-5129347 | Msa1174070:CDS | 35.0% | |
| ! | TTAGAAGTGCAATAACTGGA+GGG | - | chr8_1:5129377-5129396 | Msa1174070:CDS | 35.0% |
| !! | AACGATGTTACTGATTTGGT+TGG | - | chr8_1:5129442-5129461 | Msa1174070:intron | 35.0% |
| !! | GCTTAAACTTTTAGGAGAGT+TGG | - | chr8_1:5129576-5129595 | Msa1174070:five_prime_UTR | 35.0% |
| TGAAAGGGAAATTGAAGGAA+TGG | + | chr8_1:5127877-5127896 | None:intergenic | 35.0% | |
| TGGTTTGAAAGGGAAATTGA+AGG | + | chr8_1:5127882-5127901 | None:intergenic | 35.0% | |
| !! | CCTTTAACATTGCTTTTCTG+TGG | + | chr8_1:5127993-5128012 | None:intergenic | 35.0% |
| CCACAGAAAAGCAATGTTAA+AGG | - | chr8_1:5127990-5128009 | Msa1174070:CDS | 35.0% | |
| !! | GGAAAATTATCGTTTTTCGG+AGG | - | chr8_1:5128012-5128031 | Msa1174070:CDS | 35.0% |
| !! | AAATTATCGTTTTTCGGAGG+TGG | - | chr8_1:5128015-5128034 | Msa1174070:CDS | 35.0% |
| TCAGTTTCAAGCTTCAATGT+AGG | + | chr8_1:5128090-5128109 | None:intergenic | 35.0% | |
| GTAATAATAACTGGATCACC+AGG | + | chr8_1:5128129-5128148 | None:intergenic | 35.0% | |
| CAGATCTCTAATCCTTCAAA+TGG | - | chr8_1:5128153-5128172 | Msa1174070:intron | 35.0% | |
| !!! | AGACTCAGTTTTGAGATTAG+GGG | - | chr8_1:5128195-5128214 | Msa1174070:intron | 35.0% |
| !! | GATTAGGGGTATTGAGAAAT+TGG | - | chr8_1:5128209-5128228 | Msa1174070:intron | 35.0% |
| CTTGAATCATTACACTGACA+CGG | - | chr8_1:5128308-5128327 | Msa1174070:intron | 35.0% | |
| TGATGGAATATGTGTCTAGT+CGG | + | chr8_1:5128416-5128435 | None:intergenic | 35.0% | |
| !! | CATAACCAGCTGTTTTCATA+AGG | + | chr8_1:5128591-5128610 | None:intergenic | 35.0% |
| TCTTCAAGAGTCCTATGTTT+AGG | - | chr8_1:5128966-5128985 | Msa1174070:intron | 35.0% | |
| CTTCAAGAGTCCTATGTTTA+GGG | - | chr8_1:5128967-5128986 | Msa1174070:intron | 35.0% | |
| GACGGATGTAGTAGTTATTT+GGG | - | chr8_1:5128989-5129008 | Msa1174070:intron | 35.0% | |
| !! | ATCTGGTTTGCTACTAAGAT+TGG | + | chr8_1:5129132-5129151 | None:intergenic | 35.0% |
| GCAAACCAGATTATTAATGC+CGG | - | chr8_1:5129141-5129160 | Msa1174070:CDS | 35.0% | |
| ATTATTCCACCATCGTACAA+GGG | - | chr8_1:5129328-5129347 | Msa1174070:CDS | 35.0% | |
| ! | TTAGAAGTGCAATAACTGGA+GGG | - | chr8_1:5129377-5129396 | Msa1174070:CDS | 35.0% |
| !! | AACGATGTTACTGATTTGGT+TGG | - | chr8_1:5129442-5129461 | Msa1174070:intron | 35.0% |
| !! | GCTTAAACTTTTAGGAGAGT+TGG | - | chr8_1:5129576-5129595 | Msa1174070:five_prime_UTR | 35.0% |
| GAGTGTTCGTTCTTCTCAAA+CGG | + | chr8_1:5127819-5127838 | None:intergenic | 40.0% | |
| TCTACAGCTCAAATCATCAC+TGG | - | chr8_1:5127837-5127856 | Msa1174070:CDS | 40.0% | |
| ! | AGGTGGAGATTCAGGTTTAT+TGG | - | chr8_1:5128032-5128051 | Msa1174070:CDS | 40.0% |
| CTAGACACATATTCCATCAG+AGG | - | chr8_1:5128417-5128436 | Msa1174070:intron | 40.0% | |
| AATCTCTATAGCACCTCTGA+TGG | + | chr8_1:5128433-5128452 | None:intergenic | 40.0% | |
| CTCATTTCCATAAGCTCTAC+AGG | - | chr8_1:5128562-5128581 | Msa1174070:intron | 40.0% | |
| ! | AAGGTATCCTGTAGAGCTTA+TGG | + | chr8_1:5128572-5128591 | None:intergenic | 40.0% |
| GGATACCTTATGAAAACAGC+TGG | - | chr8_1:5128583-5128602 | Msa1174070:intron | 40.0% | |
| ATACTGTTCGGAAAGAACGA+AGG | + | chr8_1:5128857-5128876 | None:intergenic | 40.0% | |
| AAGAGTCCTATGTTTAGGGA+CGG | - | chr8_1:5128971-5128990 | Msa1174070:intron | 40.0% | |
| GGACGGATGTAGTAGTTATT+TGG | - | chr8_1:5128988-5129007 | Msa1174070:intron | 40.0% | |
| GGATGTAGTAGTTATTTGGG+TGG | - | chr8_1:5128992-5129011 | Msa1174070:intron | 40.0% | |
| !! | TGCTACTAAGATTGGTGTTG+AGG | + | chr8_1:5129124-5129143 | None:intergenic | 40.0% |
| !! | TACGATGGTGGAATAATGCT+AGG | + | chr8_1:5129325-5129344 | None:intergenic | 40.0% |
| CATTATTCCACCATCGTACA+AGG | - | chr8_1:5129327-5129346 | Msa1174070:CDS | 40.0% | |
| ATGTTTGAACCCTTGTACGA+TGG | + | chr8_1:5129340-5129359 | None:intergenic | 40.0% | |
| ! | GTTAGAAGTGCAATAACTGG+AGG | - | chr8_1:5129376-5129395 | Msa1174070:CDS | 40.0% |
| ! | GGTGGCTAATTCTGGAAAAT+GGG | - | chr8_1:5129398-5129417 | Msa1174070:exon | 40.0% |
| GAGTGTTCGTTCTTCTCAAA+CGG | + | chr8_1:5127819-5127838 | None:intergenic | 40.0% | |
| TCTACAGCTCAAATCATCAC+TGG | - | chr8_1:5127837-5127856 | Msa1174070:CDS | 40.0% | |
| ! | AGGTGGAGATTCAGGTTTAT+TGG | - | chr8_1:5128032-5128051 | Msa1174070:CDS | 40.0% |
| CTAGACACATATTCCATCAG+AGG | - | chr8_1:5128417-5128436 | Msa1174070:intron | 40.0% | |
| AATCTCTATAGCACCTCTGA+TGG | + | chr8_1:5128433-5128452 | None:intergenic | 40.0% | |
| CTCATTTCCATAAGCTCTAC+AGG | - | chr8_1:5128562-5128581 | Msa1174070:intron | 40.0% | |
| ! | AAGGTATCCTGTAGAGCTTA+TGG | + | chr8_1:5128572-5128591 | None:intergenic | 40.0% |
| GGATACCTTATGAAAACAGC+TGG | - | chr8_1:5128583-5128602 | Msa1174070:intron | 40.0% | |
| ATACTGTTCGGAAAGAACGA+AGG | + | chr8_1:5128857-5128876 | None:intergenic | 40.0% | |
| AAGAGTCCTATGTTTAGGGA+CGG | - | chr8_1:5128971-5128990 | Msa1174070:intron | 40.0% | |
| GGACGGATGTAGTAGTTATT+TGG | - | chr8_1:5128988-5129007 | Msa1174070:intron | 40.0% | |
| GGATGTAGTAGTTATTTGGG+TGG | - | chr8_1:5128992-5129011 | Msa1174070:intron | 40.0% | |
| !! | TGCTACTAAGATTGGTGTTG+AGG | + | chr8_1:5129124-5129143 | None:intergenic | 40.0% |
| !! | TACGATGGTGGAATAATGCT+AGG | + | chr8_1:5129325-5129344 | None:intergenic | 40.0% |
| CATTATTCCACCATCGTACA+AGG | - | chr8_1:5129327-5129346 | Msa1174070:CDS | 40.0% | |
| ATGTTTGAACCCTTGTACGA+TGG | + | chr8_1:5129340-5129359 | None:intergenic | 40.0% | |
| ! | GTTAGAAGTGCAATAACTGG+AGG | - | chr8_1:5129376-5129395 | Msa1174070:CDS | 40.0% |
| ! | GGTGGCTAATTCTGGAAAAT+GGG | - | chr8_1:5129398-5129417 | Msa1174070:exon | 40.0% |
| !! | TTTTTCGGAGGTGGAGATTC+AGG | - | chr8_1:5128024-5128043 | Msa1174070:CDS | 45.0% |
| CTTTGTCTTGAACCAGGCAA+CGG | + | chr8_1:5128261-5128280 | None:intergenic | 45.0% | |
| GTTCAAGACAAAGACGAGGT+TGG | - | chr8_1:5128268-5128287 | Msa1174070:CDS | 45.0% | |
| CTACATCCGTCCCTAAACAT+AGG | + | chr8_1:5128980-5128999 | None:intergenic | 45.0% | |
| ! | TTGCGCCGGCATTAATAATC+TGG | + | chr8_1:5129149-5129168 | None:intergenic | 45.0% |
| !! | CATACATGATTTGCTTGCGC+CGG | + | chr8_1:5129163-5129182 | None:intergenic | 45.0% |
| TTTGAACCCTTGTACGATGG+TGG | + | chr8_1:5129337-5129356 | None:intergenic | 45.0% | |
| ! | GGGTGGCTAATTCTGGAAAA+TGG | - | chr8_1:5129397-5129416 | Msa1174070:exon | 45.0% |
| ! | TAAGCTGAGCTAAAGGCACA+TGG | + | chr8_1:5129561-5129580 | None:intergenic | 45.0% |
| !! | TTTTTCGGAGGTGGAGATTC+AGG | - | chr8_1:5128024-5128043 | Msa1174070:CDS | 45.0% |
| CTTTGTCTTGAACCAGGCAA+CGG | + | chr8_1:5128261-5128280 | None:intergenic | 45.0% | |
| GTTCAAGACAAAGACGAGGT+TGG | - | chr8_1:5128268-5128287 | Msa1174070:CDS | 45.0% | |
| CTACATCCGTCCCTAAACAT+AGG | + | chr8_1:5128980-5128999 | None:intergenic | 45.0% | |
| ! | TTGCGCCGGCATTAATAATC+TGG | + | chr8_1:5129149-5129168 | None:intergenic | 45.0% |
| !! | CATACATGATTTGCTTGCGC+CGG | + | chr8_1:5129163-5129182 | None:intergenic | 45.0% |
| TTTGAACCCTTGTACGATGG+TGG | + | chr8_1:5129337-5129356 | None:intergenic | 45.0% | |
| ! | GGGTGGCTAATTCTGGAAAA+TGG | - | chr8_1:5129397-5129416 | Msa1174070:exon | 45.0% |
| ! | TAAGCTGAGCTAAAGGCACA+TGG | + | chr8_1:5129561-5129580 | None:intergenic | 45.0% |
| CCTCGTCTTTGTCTTGAACC+AGG | + | chr8_1:5128267-5128286 | None:intergenic | 50.0% | |
| CCTGGTTCAAGACAAAGACG+AGG | - | chr8_1:5128264-5128283 | Msa1174070:CDS | 50.0% | |
| GAAGTGCAATAACTGGAGGG+TGG | - | chr8_1:5129380-5129399 | Msa1174070:CDS | 50.0% | |
| AACTGGAGGGTGGCTAATTC+TGG | - | chr8_1:5129390-5129409 | Msa1174070:CDS | 50.0% | |
| CCTCGTCTTTGTCTTGAACC+AGG | + | chr8_1:5128267-5128286 | None:intergenic | 50.0% | |
| CCTGGTTCAAGACAAAGACG+AGG | - | chr8_1:5128264-5128283 | Msa1174070:CDS | 50.0% | |
| GAAGTGCAATAACTGGAGGG+TGG | - | chr8_1:5129380-5129399 | Msa1174070:CDS | 50.0% | |
| AACTGGAGGGTGGCTAATTC+TGG | - | chr8_1:5129390-5129409 | Msa1174070:CDS | 50.0% | |
| GCTACTCAGAAACCGTTGCC+TGG | - | chr8_1:5128246-5128265 | Msa1174070:CDS | 55.0% | |
| GTCCTGAAACCGACACGTGT+TGG | - | chr8_1:5128387-5128406 | Msa1174070:intron | 55.0% | |
| !! | GTCCAACACGTGTCGGTTTC+AGG | + | chr8_1:5128392-5128411 | None:intergenic | 55.0% |
| ! | AGTCGGTGTCCAACACGTGT+CGG | + | chr8_1:5128399-5128418 | None:intergenic | 55.0% |
| ! | GCTGAGCTAAAGGCACATGG+TGG | + | chr8_1:5129558-5129577 | None:intergenic | 55.0% |
| GCTACTCAGAAACCGTTGCC+TGG | - | chr8_1:5128246-5128265 | Msa1174070:CDS | 55.0% | |
| GTCCTGAAACCGACACGTGT+TGG | - | chr8_1:5128387-5128406 | Msa1174070:intron | 55.0% | |
| !! | GTCCAACACGTGTCGGTTTC+AGG | + | chr8_1:5128392-5128411 | None:intergenic | 55.0% |
| ! | AGTCGGTGTCCAACACGTGT+CGG | + | chr8_1:5128399-5128418 | None:intergenic | 55.0% |
| ! | GCTGAGCTAAAGGCACATGG+TGG | + | chr8_1:5129558-5129577 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 5127799 | 5129618 | 5127799 | ID=Msa1174070;Name=Msa1174070 |
| chr8_1 | mRNA | 5127799 | 5129618 | 5127799 | ID=Msa1174070-mRNA-1;Parent=Msa1174070;Name=Msa1174070-mRNA-1;_AED=0.49;_eAED=0.49;_QI=78|1|0.75|1|0.66|0.5|4|0|225 |
| chr8_1 | exon | 5127799 | 5128115 | 5127799 | ID=Msa1174070-mRNA-1:exon:1729;Parent=Msa1174070-mRNA-1 |
| chr8_1 | exon | 5128240 | 5128317 | 5128240 | ID=Msa1174070-mRNA-1:exon:1728;Parent=Msa1174070-mRNA-1 |
| chr8_1 | exon | 5129132 | 5129432 | 5129132 | ID=Msa1174070-mRNA-1:exon:1727;Parent=Msa1174070-mRNA-1 |
| chr8_1 | exon | 5129559 | 5129618 | 5129559 | ID=Msa1174070-mRNA-1:exon:1726;Parent=Msa1174070-mRNA-1 |
| chr8_1 | five_prime_UTR | 5129559 | 5129618 | 5129559 | ID=Msa1174070-mRNA-1:five_prime_utr;Parent=Msa1174070-mRNA-1 |
| chr8_1 | five_prime_UTR | 5129415 | 5129432 | 5129415 | ID=Msa1174070-mRNA-1:five_prime_utr;Parent=Msa1174070-mRNA-1 |
| chr8_1 | CDS | 5129132 | 5129414 | 5129132 | ID=Msa1174070-mRNA-1:cds;Parent=Msa1174070-mRNA-1 |
| chr8_1 | CDS | 5128240 | 5128317 | 5128240 | ID=Msa1174070-mRNA-1:cds;Parent=Msa1174070-mRNA-1 |
| chr8_1 | CDS | 5127799 | 5128115 | 5127799 | ID=Msa1174070-mRNA-1:cds;Parent=Msa1174070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
