AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1176020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176020 MtrunA17_Chr8g0346021 94.384 552 5 2 1 526 1 552 0.0 1060
Msa1176020 MtrunA17_Chr7g0263731 28.045 353 182 12 137 460 129 438 6.71e-23 101
Msa1176020 MtrunA17_Chr4g0045641 27.639 521 266 21 1 459 1 472 8.06e-23 102
Msa1176020 MtrunA17_Chr6g0462191 29.948 384 173 17 112 460 89 411 4.13e-22 99.0
Msa1176020 MtrunA17_Chr1g0181581 27.841 352 185 9 131 460 131 435 5.06e-22 99.0
Msa1176020 MtrunA17_Chr3g0126901 35.328 351 150 14 1 307 1 318 1.85e-21 97.1
Msa1176020 MtrunA17_Chr4g0025441 41.270 189 69 5 131 297 111 279 2.31e-21 96.7
Msa1176020 MtrunA17_Chr6g0472551 29.377 337 168 10 131 451 132 414 1.30e-20 94.7
Msa1176020 MtrunA17_Chr1g0200161 32.768 177 86 3 131 288 156 318 1.55e-20 94.7
Msa1176020 MtrunA17_Chr4g0020671 29.043 303 140 13 1 274 1 257 6.47e-18 86.3
Msa1176020 MtrunA17_Chr1g0204901 44.025 159 66 4 45 183 48 203 2.34e-17 84.7
Msa1176020 MtrunA17_Chr1g0203711 30.435 322 151 11 131 440 130 390 3.93e-17 84.0
Msa1176020 MtrunA17_Chr4g0057321 26.168 428 230 13 30 441 15 372 5.81e-17 83.2
Msa1176020 MtrunA17_Chr1g0146931 37.949 195 85 6 119 279 123 315 6.98e-17 83.2
Msa1176020 MtrunA17_Chr8g0342551 35.669 157 64 4 145 279 119 260 7.97e-17 82.8
Msa1176020 MtrunA17_Chr3g0135851 37.500 176 67 4 131 279 106 265 3.96e-16 80.9
Msa1176020 MtrunA17_Chr1g0166431 39.535 129 67 3 45 168 47 169 6.11e-15 77.0
Msa1176020 MtrunA17_Chr2g0330051 32.919 161 65 4 145 277 107 252 8.66e-14 73.2
Msa1176020 MtrunA17_Chr8g0340761 40.314 191 80 5 44 215 36 211 2.00e-13 72.4
Msa1176020 MtrunA17_Chr7g0273951 37.778 135 69 3 47 180 50 170 2.52e-13 71.6
Msa1176020 MtrunA17_Chr7g0273861 30.263 152 86 3 131 274 140 279 2.06e-12 69.3
Msa1176020 MtrunA17_Chr8g0389781 77.273 44 10 0 131 174 141 184 2.20e-12 69.3
Msa1176020 MtrunA17_Chr4g0060381 62.000 50 19 0 131 180 115 164 5.50e-12 68.2
Msa1176020 MtrunA17_Chr2g0283321 28.916 166 85 5 131 279 78 227 2.02e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176020 AT1G01110.2 54.609 575 164 23 1 526 1 527 1.19e-163 475
Msa1176020 AT4G00820.1 55.160 562 170 19 9 526 11 534 2.14e-162 472
Msa1176020 AT1G01110.1 57.431 397 107 15 159 526 1 364 3.72e-131 386
Msa1176020 AT4G10640.1 33.392 566 194 20 1 526 1 423 1.57e-72 237
Msa1176020 AT3G49380.1 34.286 245 111 6 1 228 1 212 1.38e-27 114
Msa1176020 AT3G49260.1 31.903 373 161 15 1 305 1 348 2.07e-24 106
Msa1176020 AT3G49260.4 31.903 373 161 15 1 305 1 348 2.07e-24 106
Msa1176020 AT3G49260.2 31.903 373 161 15 1 305 1 348 2.07e-24 106
Msa1176020 AT3G49260.3 32.075 371 164 15 1 305 1 349 9.74e-24 104
Msa1176020 AT1G72670.1 40.462 173 62 6 131 279 108 263 9.07e-22 98.2
Msa1176020 AT3G22190.3 38.728 173 63 4 131 279 103 256 1.00e-20 95.1
Msa1176020 AT3G22190.2 38.728 173 63 4 131 279 103 256 1.00e-20 95.1
Msa1176020 AT3G22190.4 38.728 173 63 4 131 279 103 256 1.00e-20 95.1
Msa1176020 AT3G22190.1 38.728 173 63 4 131 279 103 256 1.00e-20 95.1
Msa1176020 AT5G03040.1 26.465 529 269 21 1 477 1 461 2.08e-20 94.4
Msa1176020 AT5G03040.3 26.465 529 269 21 1 477 1 461 2.08e-20 94.4
Msa1176020 AT5G03040.2 26.465 529 269 21 1 477 1 461 2.08e-20 94.4
Msa1176020 AT2G26180.1 39.024 205 71 5 119 285 76 264 3.81e-20 93.2
Msa1176020 AT3G59690.2 25.144 521 259 15 1 459 1 452 3.34e-19 91.3
Msa1176020 AT3G59690.1 25.144 521 259 15 1 459 1 452 3.34e-19 91.3
Msa1176020 AT4G14750.1 37.748 151 73 3 45 187 39 176 4.40e-18 86.7
Msa1176020 AT5G13460.1 28.464 267 142 8 38 274 18 265 7.77e-18 86.7
Msa1176020 AT4G14750.2 37.748 151 73 3 45 187 98 235 9.13e-18 86.3
Msa1176020 AT4G14750.3 40.132 152 68 4 45 187 98 235 9.31e-18 86.3
Msa1176020 AT2G43680.4 25.065 387 222 12 131 513 337 659 5.81e-16 81.6
Msa1176020 AT2G43680.2 25.065 387 222 12 131 513 337 659 5.81e-16 81.6
Msa1176020 AT2G43680.3 25.065 387 222 12 131 513 337 659 5.81e-16 81.6
Msa1176020 AT2G43680.5 25.065 387 222 12 131 513 337 659 5.81e-16 81.6
Msa1176020 AT2G43680.1 25.065 387 222 12 131 513 338 660 6.03e-16 81.3
Msa1176020 AT1G17480.1 41.667 120 44 3 131 250 109 202 1.41e-15 79.0
Msa1176020 AT3G52290.1 33.533 167 75 7 131 278 123 272 4.17e-15 77.8
Msa1176020 AT3G16490.1 71.429 49 14 0 131 179 122 170 3.64e-12 68.6
Msa1176020 AT1G19870.1 37.097 124 72 3 71 194 173 290 7.49e-12 68.6
Msa1176020 AT3G09710.2 26.744 172 94 4 131 277 123 287 9.60e-12 67.8
Msa1176020 AT3G09710.1 26.506 166 88 4 131 277 123 273 1.62e-11 67.0
Msa1176020 AT4G23060.1 36.765 136 73 2 131 253 182 317 1.98e-11 66.6
Msa1176020 AT5G07240.2 76.744 43 10 0 131 173 167 209 3.17e-11 65.9
Msa1176020 AT5G07240.1 75.000 44 11 0 131 174 121 164 3.32e-11 65.9

Find 137 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATTTGTGCAAAGCTTA+TGG 0.204444 8_1:+7651632 None:intergenic
GAAATTATGGACATAGTTTA+AGG 0.213922 8_1:-7648270 Msa1176020:CDS
TTGTTCCACCCCTACTATTT+TGG 0.218545 8_1:+7648506 None:intergenic
ATCCATCTATCTAGCCATTT+TGG 0.221443 8_1:+7648895 None:intergenic
TGTGGATTATATTGATAATT+TGG 0.238180 8_1:+7648748 None:intergenic
AAGAAACACTTGTGGATCTT+TGG 0.255221 8_1:+7651194 None:intergenic
AGTACAACAAGAAGAGTAAT+TGG 0.281665 8_1:+7648189 None:intergenic
CAGTGACACTGCTAGTGTTT+GGG 0.297942 8_1:-7649858 Msa1176020:CDS
CCAACTCCTCCTACATTATA+AGG 0.303150 8_1:+7648298 None:intergenic
GGAGTTGGTTATGGAAATTA+TGG 0.312677 8_1:-7648283 Msa1176020:CDS
TAGTGAGAGGTCACAATGTT+AGG 0.313052 8_1:-7649994 Msa1176020:CDS
AAGAGCACTTCGTGCGCTTA+AGG 0.319760 8_1:-7650038 Msa1176020:CDS
TACAAAGCCATGGGAGAATA+GGG 0.328126 8_1:-7648869 Msa1176020:CDS
CTCCATAGATCACACCAAAA+TGG 0.329388 8_1:-7648691 Msa1176020:CDS
GGTTGTGAACGGATCCATTT+TGG 0.332251 8_1:+7648677 None:intergenic
TCAACACTGCAAAGTTTCTA+AGG 0.333237 8_1:-7651099 Msa1176020:five_prime_UTR
CTCATCTCAACCACCGTCTA+AGG 0.344008 8_1:+7648125 None:intergenic
GAAGTAGTATTGCAGATGAT+TGG 0.362742 8_1:-7649572 Msa1176020:CDS
TACACATTCAACAATGTTAC+AGG 0.374840 8_1:+7651243 None:intergenic
ACATCATGCTTCAACTTTGT+TGG 0.375678 8_1:+7650669 None:intergenic
CTACAAAGCCATGGGAGAAT+AGG 0.377195 8_1:-7648870 Msa1176020:CDS
TTTGCTCCTAGATATGAATA+AGG 0.377417 8_1:+7648787 None:intergenic
TCAGTGACACTGCTAGTGTT+TGG 0.380570 8_1:-7649859 Msa1176020:CDS
TCTCAACCTTATTCATATCT+AGG 0.385222 8_1:-7648793 Msa1176020:CDS
GGAACTTGTACCAAAATAGT+AGG 0.389102 8_1:-7648516 Msa1176020:CDS
GTGCTACAAGTGTGGCTTCA+AGG 0.412635 8_1:-7650641 Msa1176020:CDS
AATGTAGGAGGAGTTGGTTA+TGG 0.413219 8_1:-7648292 Msa1176020:CDS
TCGGTTGCTTGCATGTAATT+AGG 0.413740 8_1:+7648433 None:intergenic
GGAGTCGATGGCCTTTGCCT+TGG 0.415194 8_1:+7648376 None:intergenic
GAGGTTTCGCCTTCTTCAAC+CGG 0.415789 8_1:-7648151 Msa1176020:CDS
CTTGACGATCGGACTTGAAT+AGG 0.433293 8_1:+7648619 None:intergenic
TGTCTTTGTGGTTGGTGATG+TGG 0.435429 8_1:+7648730 None:intergenic
CCTCTCAAACACCAAGCTTA+AGG 0.437895 8_1:-7648558 Msa1176020:CDS
GACCAAAATGGCTAGATAGA+TGG 0.442192 8_1:-7648897 Msa1176020:CDS
TTCACTGTTTCATGATTCAC+TGG 0.442484 8_1:+7650711 None:intergenic
CAGAAAGGTTCAACTTGGTT+GGG 0.443221 8_1:+7651125 None:intergenic
CCTCCTACATTATAAGGATC+AGG 0.445401 8_1:+7648304 None:intergenic
CTTCAACCGGTGACCTTAGA+CGG 0.450676 8_1:-7648138 Msa1176020:CDS
AAGTAGTATTGCAGATGATT+GGG 0.451725 8_1:-7649571 Msa1176020:CDS
GAAAAGAAGCAGCAATGAAG+AGG 0.451997 8_1:-7649500 Msa1176020:CDS
GGTACAAGTTCCCATTGTAA+TGG 0.452470 8_1:+7648527 None:intergenic
CCTTATAATGTAGGAGGAGT+TGG 0.456681 8_1:-7648298 Msa1176020:CDS
TTCATTTATTTGCACAAATG+AGG 0.457015 8_1:-7651274 Msa1176020:five_prime_UTR
GGTCTAATTACCATTACAAT+GGG 0.460991 8_1:-7648537 Msa1176020:CDS
TTTGTGAGTGAGTGAGAGGA+GGG 0.462485 8_1:+7651569 None:intergenic
CTGCTAGTGTTTGGGATTCG+CGG 0.462678 8_1:-7649850 Msa1176020:CDS
AGAGCACTTCGTGCGCTTAA+GGG 0.465270 8_1:-7650037 Msa1176020:CDS
GTGAAGTAGACCTTATCCTT+TGG 0.466662 8_1:+7649906 None:intergenic
GGAAGAAAGGTAGTAGTTCA+TGG 0.469859 8_1:-7651006 Msa1176020:CDS
ACAGAAAGGTTCAACTTGGT+TGG 0.472834 8_1:+7651124 None:intergenic
TCAAGAAGAAGATGAAGAAA+AGG 0.473802 8_1:-7650903 Msa1176020:intron
ACACACAGTTGAAGAAGTTA+AGG 0.475450 8_1:-7649538 Msa1176020:CDS
AATGGTAGGACATCATCAAT+TGG 0.477140 8_1:-7648943 Msa1176020:intron
TGTGGCTTCAAGGACAGATC+AGG 0.489395 8_1:-7650631 Msa1176020:CDS
ACATTATAAGGATCAGGAGC+AGG 0.491564 8_1:+7648310 None:intergenic
AATGTAGCAGCATCACATTA+TGG 0.491586 8_1:-7648226 Msa1176020:CDS
TTCATAACATTAAAAGCCTA+AGG 0.491869 8_1:-7651703 Msa1176020:five_prime_UTR
ACATTCACACTCTTGAAGCT+TGG 0.492207 8_1:+7648244 None:intergenic
TAAAGTCTTTAAAGAAGAGA+AGG 0.495381 8_1:+7651151 None:intergenic
GAACTTGTACCAAAATAGTA+GGG 0.496333 8_1:-7648515 Msa1176020:CDS
TGTGAGTGAGTGAGAGGAGG+GGG 0.499611 8_1:+7651571 None:intergenic
ACATGCTCTTGCTGTGGCTA+TGG 0.501053 8_1:-7650601 Msa1176020:CDS
GATCCGGATCTATCCCTCTC+TGG 0.503639 8_1:+7648355 None:intergenic
CTAAGAGTTCAAATCATGCT+AGG 0.504978 8_1:-7650521 Msa1176020:CDS
AGTCTGCGAAGGCTCGGATT+CGG 0.507850 8_1:-7648411 Msa1176020:CDS
TTGCAGTGTTGAAGACAGAA+AGG 0.511229 8_1:+7651110 None:intergenic
CTAAGGTCACCGGTTGAAGA+AGG 0.517640 8_1:+7648142 None:intergenic
AACTTGAAGAGAGACCAAAA+TGG 0.518980 8_1:-7648909 Msa1176020:CDS
TGCTGGAGACGGAGTAGTGA+TGG 0.522782 8_1:+7648651 None:intergenic
GCTCCTGATCCTTATAATGT+AGG 0.524729 8_1:-7648307 Msa1176020:CDS
CTATCCCTCTCTGGAGTCGA+TGG 0.525156 8_1:+7648364 None:intergenic
CCTTAAGCTTGGTGTTTGAG+AGG 0.526162 8_1:+7648558 None:intergenic
GCTCTTCCCCTATTCTCCCA+TGG 0.527055 8_1:+7648862 None:intergenic
CAACCGAGTCTGCGAAGGCT+CGG 0.528428 8_1:-7648417 Msa1176020:CDS
ATATAATGGTAGTCAGAGAC+AGG 0.528989 8_1:+7651541 None:intergenic
AGGTCTAATTACCATTACAA+TGG 0.529005 8_1:-7648538 Msa1176020:CDS
GAGTTCTTGACCAAAGGATA+AGG 0.529710 8_1:-7649916 Msa1176020:CDS
AAAAGAAGCAGCAATGAAGA+GGG 0.530640 8_1:-7649499 Msa1176020:CDS
ATCTTCAAGACATTTCAGAT+AGG 0.531548 8_1:-7649826 Msa1176020:CDS
AGCTACTGCTCAAGCTGCTG+TGG 0.535167 8_1:-7650559 Msa1176020:CDS
TCACAAAGAAACAAACAGTA+AGG 0.537387 8_1:-7651378 Msa1176020:five_prime_UTR
GTTTGTGAGTGAGTGAGAGG+AGG 0.540286 8_1:+7651568 None:intergenic
AGTGTCAGAAGGTATACCTT+AGG 0.542037 8_1:+7651687 None:intergenic
GAGCACTTCGTGCGCTTAAG+GGG 0.545080 8_1:-7650036 Msa1176020:CDS
AGCAGCATCACATTATGGAT+TGG 0.546365 8_1:-7648221 Msa1176020:CDS
CACAGAGTGCGCCAAGGCAA+AGG 0.548839 8_1:-7648387 Msa1176020:CDS
TCTTGTTGTACTGAGAGTCT+CGG 0.552055 8_1:-7648178 Msa1176020:CDS
TTAACTTCTTCAACTGTGTG+TGG 0.553478 8_1:+7649540 None:intergenic
AATCCGAGCCTTCGCAGACT+CGG 0.554760 8_1:+7648414 None:intergenic
CACAACGAGGGCTTGACGAT+CGG 0.555443 8_1:+7648608 None:intergenic
TACTGAGAGTCTCGGTGGCG+AGG 0.556933 8_1:-7648170 Msa1176020:CDS
CAATGGAATGTCTTTGTGGT+TGG 0.558998 8_1:+7648722 None:intergenic
ACTCCAGAGAGGGATAGATC+CGG 0.559569 8_1:-7648358 Msa1176020:CDS
AGTAGGGGTGGAACAAGTAA+TGG 0.561747 8_1:-7648499 Msa1176020:CDS
GAAGCAATGGAATGTCTTTG+TGG 0.564288 8_1:+7648718 None:intergenic
TGTGTTTGTGAGTGAGTGAG+AGG 0.565316 8_1:+7651565 None:intergenic
GAAGACAGAAAGGTTCAACT+TGG 0.566144 8_1:+7651120 None:intergenic
TCTATGGAGCGGTGAAGCAA+TGG 0.570311 8_1:+7648705 None:intergenic
CAACCGGTGACCTTAGACGG+TGG 0.570931 8_1:-7648135 Msa1176020:CDS
AGATTATGTTGAGTACTACA+AGG 0.572264 8_1:+7651463 None:intergenic
GAGACGGAGTAGTGATGGAT+TGG 0.577607 8_1:+7648656 None:intergenic
TGGTAATTAGACCTTAAGCT+TGG 0.583935 8_1:+7648547 None:intergenic
ATAAGGTCTACTTCACATGA+TGG 0.584681 8_1:-7649899 Msa1176020:CDS
CCTGATCCTTATAATGTAGG+AGG 0.585582 8_1:-7648304 Msa1176020:CDS
GATGGATGGCTACAAAGCCA+TGG 0.586531 8_1:-7648879 Msa1176020:CDS
TGTGGCTATGGCTACAGCTG+AGG 0.587150 8_1:-7650589 Msa1176020:CDS
AAGCTGCTGTGGAAGTTGCA+AGG 0.590980 8_1:-7650548 Msa1176020:CDS
TAAGAGTTCAAATCATGCTA+GGG 0.594458 8_1:-7650520 Msa1176020:CDS
TTGGTGTTTGAGAGGTGTGA+TGG 0.596650 8_1:+7648566 None:intergenic
AAGTTGCAAGCTTTAGTGAG+AGG 0.597297 8_1:-7650007 Msa1176020:CDS
TTGTACCAAAATAGTAGGGG+TGG 0.602042 8_1:-7648511 Msa1176020:CDS
AAGCAAGAGTTCTTGACCAA+AGG 0.602268 8_1:-7649922 Msa1176020:CDS
CAACCACCGTCTAAGGTCAC+CGG 0.606102 8_1:+7648132 None:intergenic
ATGGATGGCTACAAAGCCAT+GGG 0.613295 8_1:-7648878 Msa1176020:CDS
AAAGGTTCAACTTGGTTGGG+TGG 0.616143 8_1:+7651128 None:intergenic
GCAAGCAACCGAGTCTGCGA+AGG 0.620241 8_1:-7648422 Msa1176020:CDS
CATTATAAGGATCAGGAGCA+GGG 0.621699 8_1:+7648311 None:intergenic
AGCAAGCAAAGATGACACTT+AGG 0.631862 8_1:-7649970 Msa1176020:CDS
ACAGCAGTGGGAGTGTCAGA+AGG 0.634678 8_1:+7651676 None:intergenic
AACACTAGCAGTGTCACTGA+AGG 0.637230 8_1:+7649862 None:intergenic
AAAATGGCTAGATAGATGGA+TGG 0.637956 8_1:-7648893 Msa1176020:CDS
TTCGGTCACAGAGTGCGCCA+AGG 0.638278 8_1:-7648393 Msa1176020:CDS
AAGAGACTCTATTAAGACTG+TGG 0.640275 8_1:-7648827 Msa1176020:CDS
AAGGCCATCGACTCCAGAGA+GGG 0.644870 8_1:-7648368 Msa1176020:CDS
AAAGCTAAAAGAAACACTTG+TGG 0.646822 8_1:+7651186 None:intergenic
GCATGAAGGTGGACAGCAGT+GGG 0.649814 8_1:+7651664 None:intergenic
ACAAAGCCATGGGAGAATAG+GGG 0.653021 8_1:-7648868 Msa1176020:CDS
AGTGATGGATTGGTTGTGAA+CGG 0.660603 8_1:+7648666 None:intergenic
CTATCTTCTCGAACACAACG+AGG 0.664998 8_1:+7648595 None:intergenic
TATCTTCTCGAACACAACGA+GGG 0.667052 8_1:+7648596 None:intergenic
TGTTGTTAGTGCTACAAGTG+TGG 0.667700 8_1:-7650649 Msa1176020:CDS
AACTTGTACCAAAATAGTAG+GGG 0.675624 8_1:-7648514 Msa1176020:CDS
TGAGAAACATGCTCTTGCTG+TGG 0.692861 8_1:-7650607 Msa1176020:CDS
TGTTGTACTGAGAGTCTCGG+TGG 0.693541 8_1:-7648175 Msa1176020:CDS
GGCATGAAGGTGGACAGCAG+TGG 0.698214 8_1:+7651663 None:intergenic
TTGTGAGTGAGTGAGAGGAG+GGG 0.701836 8_1:+7651570 None:intergenic
AAAGGCCATCGACTCCAGAG+AGG 0.711647 8_1:-7648369 Msa1176020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTTATGATTCAATATAAT+GGG + chr8_1:7648338-7648357 None:intergenic 15.0%
!! TGATTTATGATTCAATATAA+TGG + chr8_1:7648339-7648358 None:intergenic 15.0%
!!! AATATTTTATAGTAGTACAT+TGG - chr8_1:7648422-7648441 Msa1176020:CDS 15.0%
!! ATTAGATAGTAAAAACAAAA+GGG + chr8_1:7649016-7649035 None:intergenic 15.0%
!! AATTAGATAGTAAAAACAAA+AGG + chr8_1:7649017-7649036 None:intergenic 15.0%
!!! AGAATTAATTTTGAATTGTT+TGG - chr8_1:7650621-7650640 Msa1176020:CDS 15.0%
!!! TGTTTTTACTATCTAATTCA+TGG - chr8_1:7649019-7649038 Msa1176020:intron 20.0%
!! GGTTAGAAAATTTAATACAT+AGG + chr8_1:7649707-7649726 None:intergenic 20.0%
!! AAATTTGATTACAATGATGT+TGG + chr8_1:7650083-7650102 None:intergenic 20.0%
!! TTAGTAGCAAATATTATGTT+TGG - chr8_1:7650127-7650146 Msa1176020:intron 20.0%
!!! TATTTTGATGTTCTGTTTAT+AGG - chr8_1:7650200-7650219 Msa1176020:intron 20.0%
!! AGAAAATAAAGTGAAAAAGA+GGG + chr8_1:7650414-7650433 None:intergenic 20.0%
!! AAGAAAATAAAGTGAAAAAG+AGG + chr8_1:7650415-7650434 None:intergenic 20.0%
!! TAACTTTGAATGAATTGATT+GGG + chr8_1:7650805-7650824 None:intergenic 20.0%
!! TTAACTTTGAATGAATTGAT+TGG + chr8_1:7650806-7650825 None:intergenic 20.0%
!!! TGTGGATTATATTGATAATT+TGG + chr8_1:7651098-7651117 None:intergenic 20.0%
! TTCATAACATTAAAAGCCTA+AGG - chr8_1:7648140-7648159 Msa1176020:CDS 25.0%
! TTCATTTATTTGCACAAATG+AGG - chr8_1:7648569-7648588 Msa1176020:CDS 25.0%
!! TAAAGTCTTTAAAGAAGAGA+AGG + chr8_1:7648695-7648714 None:intergenic 25.0%
!! AAATGTTGCTAAGTTTTACA+TGG - chr8_1:7648814-7648833 Msa1176020:CDS 25.0%
!! AATGTTGCTAAGTTTTACAT+GGG - chr8_1:7648815-7648834 Msa1176020:CDS 25.0%
!!! CTTTTTTCACTATCTTTTGT+TGG + chr8_1:7648893-7648912 None:intergenic 25.0%
! AAAGATAGTGAAAAAAGAAG+TGG - chr8_1:7648896-7648915 Msa1176020:CDS 25.0%
!!! AAAAAAGAAGGTGGATTTTT+AGG - chr8_1:7649106-7649125 Msa1176020:intron 25.0%
! CTTTATGTTTGACAATATCA+TGG - chr8_1:7649498-7649517 Msa1176020:CDS 25.0%
!! AATATTTGCTACTAAAAGCA+TGG + chr8_1:7650122-7650141 None:intergenic 25.0%
!!! CTTTTTAGTTACAAAAGCAA+CGG - chr8_1:7650161-7650180 Msa1176020:intron 25.0%
! ATACCAAAAATCAATTGTTG+AGG + chr8_1:7650693-7650712 None:intergenic 25.0%
!!! ATATTCAACTCACTTTTACA+TGG - chr8_1:7650721-7650740 Msa1176020:CDS 25.0%
! ATGAATTGATTGGGTAAAAT+TGG + chr8_1:7650796-7650815 None:intergenic 25.0%
!! AAGCAATTTTCTTAGCTAAT+TGG - chr8_1:7650851-7650870 Msa1176020:intron 25.0%
! GAAATTATGGACATAGTTTA+AGG - chr8_1:7651573-7651592 Msa1176020:five_prime_UTR 25.0%
ATGAATTTGTGCAAAGCTTA+TGG + chr8_1:7648214-7648233 None:intergenic 30.0%
TGGGAGAATTTCTCATATAA+TGG + chr8_1:7648319-7648338 None:intergenic 30.0%
AGATTATGTTGAGTACTACA+AGG + chr8_1:7648383-7648402 None:intergenic 30.0%
TCACAAAGAAACAAACAGTA+AGG - chr8_1:7648465-7648484 Msa1176020:CDS 30.0%
TACACATTCAACAATGTTAC+AGG + chr8_1:7648603-7648622 None:intergenic 30.0%
AAAGCTAAAAGAAACACTTG+TGG + chr8_1:7648660-7648679 None:intergenic 30.0%
! ATGTTGCTAAGTTTTACATG+GGG - chr8_1:7648816-7648835 Msa1176020:CDS 30.0%
TCAAGAAGAAGATGAAGAAA+AGG - chr8_1:7648940-7648959 Msa1176020:intron 30.0%
TGTAGAAGAGAGAAAAAAGA+AGG - chr8_1:7649094-7649113 Msa1176020:intron 30.0%
TAAGAGTTCAAATCATGCTA+GGG - chr8_1:7649323-7649342 Msa1176020:intron 30.0%
AACTTCTTTCAGAGGTTATT+TGG - chr8_1:7649371-7649390 Msa1176020:intron 30.0%
AACAGATCTAATTGCATGTT+TGG - chr8_1:7649405-7649424 Msa1176020:intron 30.0%
! AATTGCATGTTTGGAATTAC+TGG - chr8_1:7649414-7649433 Msa1176020:intron 30.0%
TTGACGAAATCACATTAACA+CGG + chr8_1:7649667-7649686 None:intergenic 30.0%
ATATCACACACTCTTTATCA+AGG + chr8_1:7649728-7649747 None:intergenic 30.0%
!!! AAGTACCGTTTTTTCTTTCT+TGG - chr8_1:7649757-7649776 Msa1176020:intron 30.0%
ACACACCAAGAAAGAAAAAA+CGG + chr8_1:7649765-7649784 None:intergenic 30.0%
ATCTTCAAGACATTTCAGAT+AGG - chr8_1:7650017-7650036 Msa1176020:CDS 30.0%
! ATGTGTTTGAATCTTTTGAG+TGG - chr8_1:7650226-7650245 Msa1176020:intron 30.0%
AAGTAGTATTGCAGATGATT+GGG - chr8_1:7650272-7650291 Msa1176020:intron 30.0%
! TCTAGGCAGTATTGTAATTT+TGG + chr8_1:7650511-7650530 None:intergenic 30.0%
TACACTCATGAGTAAATGTT+GGG + chr8_1:7650556-7650575 None:intergenic 30.0%
! CAATTTTATTCCTCCAAAAG+TGG + chr8_1:7650588-7650607 None:intergenic 30.0%
!! TTGCCTCAACAATTGATTTT+TGG - chr8_1:7650687-7650706 Msa1176020:CDS 30.0%
CTAAGAAAATTGCTTGTGTT+TGG + chr8_1:7650846-7650865 None:intergenic 30.0%
CTTTGACAATTTCACAGATT+TGG - chr8_1:7650874-7650893 Msa1176020:intron 30.0%
ATTTCACAGATTTGGAGAAA+TGG - chr8_1:7650882-7650901 Msa1176020:intron 30.0%
TCTCAACCTTATTCATATCT+AGG - chr8_1:7651050-7651069 Msa1176020:five_prime_UTR 30.0%
TTTGCTCCTAGATATGAATA+AGG + chr8_1:7651059-7651078 None:intergenic 30.0%
AGGTCTAATTACCATTACAA+TGG - chr8_1:7651305-7651324 Msa1176020:five_prime_UTR 30.0%
GGTCTAATTACCATTACAAT+GGG - chr8_1:7651306-7651325 Msa1176020:five_prime_UTR 30.0%
GAACTTGTACCAAAATAGTA+GGG - chr8_1:7651328-7651347 Msa1176020:five_prime_UTR 30.0%
AACTTGTACCAAAATAGTAG+GGG - chr8_1:7651329-7651348 Msa1176020:five_prime_UTR 30.0%
! AAGTCTTTTCTTTACTGATC+CGG + chr8_1:7651507-7651526 None:intergenic 30.0%
AGTACAACAAGAAGAGTAAT+TGG + chr8_1:7651657-7651676 None:intergenic 30.0%
! TATGGATTTTTGTGGCATGA+AGG + chr8_1:7648196-7648215 None:intergenic 35.0%
! GCAAAGCTTATGGATTTTTG+TGG + chr8_1:7648204-7648223 None:intergenic 35.0%
ATATAATGGTAGTCAGAGAC+AGG + chr8_1:7648305-7648324 None:intergenic 35.0%
AAGAAACACTTGTGGATCTT+TGG + chr8_1:7648652-7648671 None:intergenic 35.0%
AGAAGAGAAGGAGAAAAACA+AGG + chr8_1:7648683-7648702 None:intergenic 35.0%
TCAACACTGCAAAGTTTCTA+AGG - chr8_1:7648744-7648763 Msa1176020:CDS 35.0%
! AAGTTTTACATGGGGAAGAA+AGG - chr8_1:7648824-7648843 Msa1176020:CDS 35.0%
AGAAGAGAGAAAAAAGAAGG+TGG - chr8_1:7649097-7649116 Msa1176020:intron 35.0%
TTCACTGTTTCATGATTCAC+TGG + chr8_1:7649135-7649154 None:intergenic 35.0%
ACATCATGCTTCAACTTTGT+TGG + chr8_1:7649177-7649196 None:intergenic 35.0%
CTAAGAGTTCAAATCATGCT+AGG - chr8_1:7649322-7649341 Msa1176020:intron 35.0%
GTGATTCAAACTTCTTTCAG+AGG - chr8_1:7649363-7649382 Msa1176020:intron 35.0%
GAGCTTCAACAAAATTACAC+TGG + chr8_1:7649461-7649480 None:intergenic 35.0%
TCCAAAATCATTGTGGCAAT+TGG + chr8_1:7649566-7649585 None:intergenic 35.0%
CAACTGATCCAAAATCATTG+TGG + chr8_1:7649573-7649592 None:intergenic 35.0%
! TTTTGGATCAGTTGTGAGTT+TGG - chr8_1:7649579-7649598 Msa1176020:CDS 35.0%
ATAAGGTCTACTTCACATGA+TGG - chr8_1:7649944-7649963 Msa1176020:CDS 35.0%
!!! TTGTTTTGACAGTCAAGAGA+AGG - chr8_1:7650249-7650268 Msa1176020:intron 35.0%
GAAGTAGTATTGCAGATGAT+TGG - chr8_1:7650271-7650290 Msa1176020:intron 35.0%
TTAACTTCTTCAACTGTGTG+TGG + chr8_1:7650306-7650325 None:intergenic 35.0%
ACACACAGTTGAAGAAGTTA+AGG - chr8_1:7650305-7650324 Msa1176020:intron 35.0%
! TTCTTTTCTCTGTTGCAACA+TGG + chr8_1:7650331-7650350 None:intergenic 35.0%
AAAAGAAGCAGCAATGAAGA+GGG - chr8_1:7650344-7650363 Msa1176020:intron 35.0%
AACCTGTTGTGAAAATGCTT+GGG + chr8_1:7650382-7650401 None:intergenic 35.0%
AAACCTGTTGTGAAAATGCT+TGG + chr8_1:7650383-7650402 None:intergenic 35.0%
! AGATTTTTCCGCAGTGATTT+TGG + chr8_1:7650473-7650492 None:intergenic 35.0%
TGATGAGTTCGACAAAATCT+AGG + chr8_1:7650528-7650547 None:intergenic 35.0%
GTACACTCATGAGTAAATGT+TGG + chr8_1:7650557-7650576 None:intergenic 35.0%
ATTGCTTGTGTTTGGTTATG+CGG + chr8_1:7650838-7650857 None:intergenic 35.0%
AATGGTAGGACATCATCAAT+TGG - chr8_1:7650900-7650919 Msa1176020:intron 35.0%
AACTTGAAGAGAGACCAAAA+TGG - chr8_1:7650934-7650953 Msa1176020:CDS 35.0%
! ATCCATCTATCTAGCCATTT+TGG + chr8_1:7650951-7650970 None:intergenic 35.0%
AAAATGGCTAGATAGATGGA+TGG - chr8_1:7650950-7650969 Msa1176020:CDS 35.0%
AAGAGACTCTATTAAGACTG+TGG - chr8_1:7651016-7651035 Msa1176020:exon 35.0%
!! ATCCATTTTGGTGTGATCTA+TGG + chr8_1:7651157-7651176 None:intergenic 35.0%
! TGAATAGGTCTTGATTTTGC+TGG + chr8_1:7651212-7651231 None:intergenic 35.0%
TGGTAATTAGACCTTAAGCT+TGG + chr8_1:7651299-7651318 None:intergenic 35.0%
GGAACTTGTACCAAAATAGT+AGG - chr8_1:7651327-7651346 Msa1176020:five_prime_UTR 35.0%
! GGAGTTGGTTATGGAAATTA+TGG - chr8_1:7651560-7651579 Msa1176020:five_prime_UTR 35.0%
AATGTAGCAGCATCACATTA+TGG - chr8_1:7651617-7651636 Msa1176020:five_prime_UTR 35.0%
! AGTGTCAGAAGGTATACCTT+AGG + chr8_1:7648159-7648178 None:intergenic 40.0%
CAGAAAGGTTCAACTTGGTT+GGG + chr8_1:7648721-7648740 None:intergenic 40.0%
ACAGAAAGGTTCAACTTGGT+TGG + chr8_1:7648722-7648741 None:intergenic 40.0%
GAAGACAGAAAGGTTCAACT+TGG + chr8_1:7648726-7648745 None:intergenic 40.0%
! TTGCAGTGTTGAAGACAGAA+AGG + chr8_1:7648736-7648755 None:intergenic 40.0%
GGAAGAAAGGTAGTAGTTCA+TGG - chr8_1:7648837-7648856 Msa1176020:CDS 40.0%
TGTTGTTAGTGCTACAAGTG+TGG - chr8_1:7649194-7649213 Msa1176020:intron 40.0%
CTGGAAGTTTGACGAAATCA+CGG - chr8_1:7649433-7649452 Msa1176020:intron 40.0%
! GCCAATTGCCACAATGATTT+TGG - chr8_1:7649562-7649581 Msa1176020:CDS 40.0%
CACAATGTTCAACCGTGATT+TGG - chr8_1:7649608-7649627 Msa1176020:intron 40.0%
! GCGTAGTTTTTGCCAAATCA+CGG + chr8_1:7649623-7649642 None:intergenic 40.0%
! AAGTTGCAAGCTTTAGTGAG+AGG - chr8_1:7649836-7649855 Msa1176020:CDS 40.0%
TAGTGAGAGGTCACAATGTT+AGG - chr8_1:7649849-7649868 Msa1176020:CDS 40.0%
AGCAAGCAAAGATGACACTT+AGG - chr8_1:7649873-7649892 Msa1176020:CDS 40.0%
AAGCAAGAGTTCTTGACCAA+AGG - chr8_1:7649921-7649940 Msa1176020:CDS 40.0%
GAGTTCTTGACCAAAGGATA+AGG - chr8_1:7649927-7649946 Msa1176020:CDS 40.0%
GTGAAGTAGACCTTATCCTT+TGG + chr8_1:7649940-7649959 None:intergenic 40.0%
GAAAAGAAGCAGCAATGAAG+AGG - chr8_1:7650343-7650362 Msa1176020:intron 40.0%
TTGTGAAAATGCTTGGGACA+AGG + chr8_1:7650376-7650395 None:intergenic 40.0%
TCTTGTTGAGTCTGCCTATT+TGG - chr8_1:7650431-7650450 Msa1176020:intron 40.0%
AGTCTGCCTATTTGGATTGA+CGG - chr8_1:7650439-7650458 Msa1176020:intron 40.0%
AACTCACCGTCAATCCAAAT+AGG + chr8_1:7650448-7650467 None:intergenic 40.0%
TGAGTTTGCCAAAATCACTG+CGG - chr8_1:7650462-7650481 Msa1176020:intron 40.0%
! TGTACGTGTGTTTCCACTTT+TGG - chr8_1:7650572-7650591 Msa1176020:CDS 40.0%
GAATTGTTTGGATCTTCTCG+AGG - chr8_1:7650633-7650652 Msa1176020:CDS 40.0%
CACAGATTTGGAGAAATGGT+AGG - chr8_1:7650886-7650905 Msa1176020:intron 40.0%
GACCAAAATGGCTAGATAGA+TGG - chr8_1:7650946-7650965 Msa1176020:CDS 40.0%
TACAAAGCCATGGGAGAATA+GGG - chr8_1:7650974-7650993 Msa1176020:CDS 40.0%
CAATGGAATGTCTTTGTGGT+TGG + chr8_1:7651124-7651143 None:intergenic 40.0%
GAAGCAATGGAATGTCTTTG+TGG + chr8_1:7651128-7651147 None:intergenic 40.0%
!! TTTTGGTGTGATCTATGGAG+CGG + chr8_1:7651152-7651171 None:intergenic 40.0%
CTCCATAGATCACACCAAAA+TGG - chr8_1:7651152-7651171 Msa1176020:five_prime_UTR 40.0%
!! AGTGATGGATTGGTTGTGAA+CGG + chr8_1:7651180-7651199 None:intergenic 40.0%
TATCTTCTCGAACACAACGA+GGG + chr8_1:7651250-7651269 None:intergenic 40.0%
GGTACAAGTTCCCATTGTAA+TGG + chr8_1:7651319-7651338 None:intergenic 40.0%
TTGTACCAAAATAGTAGGGG+TGG - chr8_1:7651332-7651351 Msa1176020:five_prime_UTR 40.0%
! TTGTTCCACCCCTACTATTT+TGG + chr8_1:7651340-7651359 None:intergenic 40.0%
TCGGTTGCTTGCATGTAATT+AGG + chr8_1:7651413-7651432 None:intergenic 40.0%
CATTATAAGGATCAGGAGCA+GGG + chr8_1:7651535-7651554 None:intergenic 40.0%
ACATTATAAGGATCAGGAGC+AGG + chr8_1:7651536-7651555 None:intergenic 40.0%
GCTCCTGATCCTTATAATGT+AGG - chr8_1:7651536-7651555 Msa1176020:intron 40.0%
CCTCCTACATTATAAGGATC+AGG + chr8_1:7651542-7651561 None:intergenic 40.0%
CCTGATCCTTATAATGTAGG+AGG - chr8_1:7651539-7651558 Msa1176020:intron 40.0%
CCAACTCCTCCTACATTATA+AGG + chr8_1:7651548-7651567 None:intergenic 40.0%
CCTTATAATGTAGGAGGAGT+TGG - chr8_1:7651545-7651564 Msa1176020:five_prime_UTR 40.0%
! AATGTAGGAGGAGTTGGTTA+TGG - chr8_1:7651551-7651570 Msa1176020:five_prime_UTR 40.0%
ACATTCACACTCTTGAAGCT+TGG + chr8_1:7651602-7651621 None:intergenic 40.0%
AGCAGCATCACATTATGGAT+TGG - chr8_1:7651622-7651641 Msa1176020:five_prime_UTR 40.0%
! TCTTGTTGTACTGAGAGTCT+CGG - chr8_1:7651665-7651684 Msa1176020:five_prime_UTR 40.0%
! GGATTTTTGTGGCATGAAGG+TGG + chr8_1:7648193-7648212 None:intergenic 45.0%
TTTGTGAGTGAGTGAGAGGA+GGG + chr8_1:7648277-7648296 None:intergenic 45.0%
TGTGTTTGTGAGTGAGTGAG+AGG + chr8_1:7648281-7648300 None:intergenic 45.0%
AAAGGTTCAACTTGGTTGGG+TGG + chr8_1:7648718-7648737 None:intergenic 45.0%
TGAGAAACATGCTCTTGCTG+TGG - chr8_1:7649236-7649255 Msa1176020:intron 45.0%
GGTGTGTGTTTGAACCTTGA+AGG - chr8_1:7649778-7649797 Msa1176020:intron 45.0%
AAGTGCTCTTCTTGCCTTCA+AGG + chr8_1:7649795-7649814 None:intergenic 45.0%
! AACACTAGCAGTGTCACTGA+AGG + chr8_1:7649984-7650003 None:intergenic 45.0%
TCAGTGACACTGCTAGTGTT+TGG - chr8_1:7649984-7650003 Msa1176020:CDS 45.0%
CAGTGACACTGCTAGTGTTT+GGG - chr8_1:7649985-7650004 Msa1176020:CDS 45.0%
! GTCCCAAGCATTTTCACAAC+AGG - chr8_1:7650377-7650396 Msa1176020:intron 45.0%
!! ACGTGTGTTTCCACTTTTGG+AGG - chr8_1:7650575-7650594 Msa1176020:CDS 45.0%
TGGATCTTCTCGAGGAGAAT+TGG - chr8_1:7650641-7650660 Msa1176020:CDS 45.0%
ATGGATGGCTACAAAGCCAT+GGG - chr8_1:7650965-7650984 Msa1176020:CDS 45.0%
CTACAAAGCCATGGGAGAAT+AGG - chr8_1:7650973-7650992 Msa1176020:CDS 45.0%
ACAAAGCCATGGGAGAATAG+GGG - chr8_1:7650975-7650994 Msa1176020:CDS 45.0%
!! TGTCTTTGTGGTTGGTGATG+TGG + chr8_1:7651116-7651135 None:intergenic 45.0%
! GGTTGTGAACGGATCCATTT+TGG + chr8_1:7651169-7651188 None:intergenic 45.0%
! GGTCTTGATTTTGCTGGAGA+CGG + chr8_1:7651206-7651225 None:intergenic 45.0%
CTTGACGATCGGACTTGAAT+AGG + chr8_1:7651227-7651246 None:intergenic 45.0%
CTATCTTCTCGAACACAACG+AGG + chr8_1:7651251-7651270 None:intergenic 45.0%
! TTGGTGTTTGAGAGGTGTGA+TGG + chr8_1:7651280-7651299 None:intergenic 45.0%
!! CCTTAAGCTTGGTGTTTGAG+AGG + chr8_1:7651288-7651307 None:intergenic 45.0%
CCTCTCAAACACCAAGCTTA+AGG - chr8_1:7651285-7651304 Msa1176020:five_prime_UTR 45.0%
AGTAGGGGTGGAACAAGTAA+TGG - chr8_1:7651344-7651363 Msa1176020:five_prime_UTR 45.0%
!!! TTATATATTCATTTTTTTTT+TGG - chr8_1:7648499-7648518 Msa1176020:CDS 5.0%
TTGTGAGTGAGTGAGAGGAG+GGG + chr8_1:7648276-7648295 None:intergenic 50.0%
GTTTGTGAGTGAGTGAGAGG+AGG + chr8_1:7648278-7648297 None:intergenic 50.0%
GTGCTACAAGTGTGGCTTCA+AGG - chr8_1:7649202-7649221 Msa1176020:intron 50.0%
TGTGGCTTCAAGGACAGATC+AGG - chr8_1:7649212-7649231 Msa1176020:intron 50.0%
! ACATGCTCTTGCTGTGGCTA+TGG - chr8_1:7649242-7649261 Msa1176020:intron 50.0%
AAGCTGCTGTGGAAGTTGCA+AGG - chr8_1:7649295-7649314 Msa1176020:intron 50.0%
!! AAGAGCACTTCGTGCGCTTA+AGG - chr8_1:7649805-7649824 Msa1176020:intron 50.0%
! AGAGCACTTCGTGCGCTTAA+GGG - chr8_1:7649806-7649825 Msa1176020:intron 50.0%
! CTGCTAGTGTTTGGGATTCG+CGG - chr8_1:7649993-7650012 Msa1176020:CDS 50.0%
GATGGATGGCTACAAAGCCA+TGG - chr8_1:7650964-7650983 Msa1176020:CDS 50.0%
TCTATGGAGCGGTGAAGCAA+TGG + chr8_1:7651141-7651160 None:intergenic 50.0%
!! GAGACGGAGTAGTGATGGAT+TGG + chr8_1:7651190-7651209 None:intergenic 50.0%
ACTCCAGAGAGGGATAGATC+CGG - chr8_1:7651485-7651504 Msa1176020:five_prime_UTR 50.0%
TGTTGTACTGAGAGTCTCGG+TGG - chr8_1:7651668-7651687 Msa1176020:five_prime_UTR 50.0%
GAGGTTTCGCCTTCTTCAAC+CGG - chr8_1:7651692-7651711 Msa1176020:five_prime_UTR 50.0%
! CTAAGGTCACCGGTTGAAGA+AGG + chr8_1:7651704-7651723 None:intergenic 50.0%
CTTCAACCGGTGACCTTAGA+CGG - chr8_1:7651705-7651724 Msa1176020:five_prime_UTR 50.0%
!! ACAGCAGTGGGAGTGTCAGA+AGG + chr8_1:7648170-7648189 None:intergenic 55.0%
GCATGAAGGTGGACAGCAGT+GGG + chr8_1:7648182-7648201 None:intergenic 55.0%
TGTGAGTGAGTGAGAGGAGG+GGG + chr8_1:7648275-7648294 None:intergenic 55.0%
TGTGGCTATGGCTACAGCTG+AGG - chr8_1:7649254-7649273 Msa1176020:intron 55.0%
AGCTACTGCTCAAGCTGCTG+TGG - chr8_1:7649284-7649303 Msa1176020:intron 55.0%
GAGCACTTCGTGCGCTTAAG+GGG - chr8_1:7649807-7649826 Msa1176020:intron 55.0%
GCTCTTCCCCTATTCTCCCA+TGG + chr8_1:7650984-7651003 None:intergenic 55.0%
TGCTGGAGACGGAGTAGTGA+TGG + chr8_1:7651195-7651214 None:intergenic 55.0%
CACAACGAGGGCTTGACGAT+CGG + chr8_1:7651238-7651257 None:intergenic 55.0%
AATCCGAGCCTTCGCAGACT+CGG + chr8_1:7651432-7651451 None:intergenic 55.0%
AGTCTGCGAAGGCTCGGATT+CGG - chr8_1:7651432-7651451 Msa1176020:five_prime_UTR 55.0%
!! AAAGGCCATCGACTCCAGAG+AGG - chr8_1:7651474-7651493 Msa1176020:five_prime_UTR 55.0%
!! AAGGCCATCGACTCCAGAGA+GGG - chr8_1:7651475-7651494 Msa1176020:five_prime_UTR 55.0%
!! CTATCCCTCTCTGGAGTCGA+TGG + chr8_1:7651482-7651501 None:intergenic 55.0%
GATCCGGATCTATCCCTCTC+TGG + chr8_1:7651491-7651510 None:intergenic 55.0%
! CAACCACCGTCTAAGGTCAC+CGG + chr8_1:7651714-7651733 None:intergenic 55.0%
GGCATGAAGGTGGACAGCAG+TGG + chr8_1:7648183-7648202 None:intergenic 60.0%
GCAAGCAACCGAGTCTGCGA+AGG - chr8_1:7651421-7651440 Msa1176020:five_prime_UTR 60.0%
CAACCGAGTCTGCGAAGGCT+CGG - chr8_1:7651426-7651445 Msa1176020:five_prime_UTR 60.0%
TTCGGTCACAGAGTGCGCCA+AGG - chr8_1:7651450-7651469 Msa1176020:five_prime_UTR 60.0%
CACAGAGTGCGCCAAGGCAA+AGG - chr8_1:7651456-7651475 Msa1176020:five_prime_UTR 60.0%
GGAGTCGATGGCCTTTGCCT+TGG + chr8_1:7651470-7651489 None:intergenic 60.0%
TACTGAGAGTCTCGGTGGCG+AGG - chr8_1:7651673-7651692 Msa1176020:five_prime_UTR 60.0%
CAACCGGTGACCTTAGACGG+TGG - chr8_1:7651708-7651727 Msa1176020:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 7648126 7651739 7648126 ID=Msa1176020;Name=Msa1176020
chr8_1 mRNA 7648126 7651739 7648126 ID=Msa1176020-mRNA-1;Parent=Msa1176020;Name=Msa1176020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=687|0.6|0.5|1|0.8|0.66|6|0|526
chr8_1 exon 7648126 7648957 7648126 ID=Msa1176020-mRNA-1:exon:2763;Parent=Msa1176020-mRNA-1
chr8_1 exon 7649495 7649604 7649495 ID=Msa1176020-mRNA-1:exon:2762;Parent=Msa1176020-mRNA-1
chr8_1 exon 7649817 7650065 7649817 ID=Msa1176020-mRNA-1:exon:2761;Parent=Msa1176020-mRNA-1
chr8_1 exon 7650506 7650766 7650506 ID=Msa1176020-mRNA-1:exon:2760;Parent=Msa1176020-mRNA-1
chr8_1 exon 7650904 7651522 7650904 ID=Msa1176020-mRNA-1:exon:2759;Parent=Msa1176020-mRNA-1
chr8_1 exon 7651543 7651739 7651543 ID=Msa1176020-mRNA-1:exon:2758;Parent=Msa1176020-mRNA-1
chr8_1 five_prime_UTR 7651543 7651739 7651543 ID=Msa1176020-mRNA-1:five_prime_utr;Parent=Msa1176020-mRNA-1
chr8_1 five_prime_UTR 7651033 7651522 7651033 ID=Msa1176020-mRNA-1:five_prime_utr;Parent=Msa1176020-mRNA-1
chr8_1 CDS 7650904 7651032 7650904 ID=Msa1176020-mRNA-1:cds;Parent=Msa1176020-mRNA-1
chr8_1 CDS 7650506 7650766 7650506 ID=Msa1176020-mRNA-1:cds;Parent=Msa1176020-mRNA-1
chr8_1 CDS 7649817 7650065 7649817 ID=Msa1176020-mRNA-1:cds;Parent=Msa1176020-mRNA-1
chr8_1 CDS 7649495 7649604 7649495 ID=Msa1176020-mRNA-1:cds;Parent=Msa1176020-mRNA-1
chr8_1 CDS 7648126 7648957 7648126 ID=Msa1176020-mRNA-1:cds;Parent=Msa1176020-mRNA-1
Gene Sequence

>Msa1176020

ATGGGGAAGAAAGGTAGTAGTTCATGGTTAACTGCTGTGAAAAGAGCATTCAGATCTCCAACAAAAGATAGTGAAAAAAGAAGTGGTAGAAGAAGAGAAGATTGTGATCAAGAAGAAGATGAAGAAAAGAAGAGAGAAAAAAGAAGGTGGATTTTTAGGAAACCAGTGAATCATGAAACAGTGAATAATACTCAACAAAGTACACCAACAAAGTTGAAGCATGATGTTGTTAGTGCTACAAGTGTGGCTTCAAGGACAGATCAGGATGAGAAACATGCTCTTGCTGTGGCTATGGCTACAGCTGAGGCAGCAAGAGCTACTGCTCAAGCTGCTGTGGAAGTTGCAAGGTTGACTAAGAGTTCAAATCATGCTAGGGAGCATTATGCTGCTGCAAGAAGAGCACTTCGTGCGCTTAAGGGGTTAGTGAAGTTGCAAGCTTTAGTGAGAGGTCACAATGTTAGGAAGCAAGCAAAGATGACACTTAGGTGCATGCAAGCTCTTGTTAGAGTACAAGCAAGAGTTCTTGACCAAAGGATAAGGTCTACTTCACATGATGGAAGTAGAAAATCAACCTTCAGTGACACTGCTAGTGTTTGGGATTCGCGGTATCTTCAAGACATTTCAGATAGGAAATCAATTTCAAGAGAAGGAAGTAGTATTGCAGATGATTGGGATGATCGTCCACACACAGTTGAAGAAGTTAAGGCCATGTTGCAACAGAGAAAAGAAGCAGCAATGAAGAGGGAAAAGACATCATCAATTGGAAATGAAGATGAACTTGAAGAGAGACCAAAATGGCTAGATAGATGGATGGCTACAAAGCCATGGGAGAATAGGGGAAGAGCTTCAACTGATCAAAGAGACTCTATTAAGACTGTGGAAGTCGACACATCTCAACCTTATTCATATCTAGGAGCAAATTACAGAAGATCACATCCAAATTATCAATATAATCCACATCACCAACCACAAAGACATTCCATTGCTTCACCGCTCCATAGATCACACCAAAATGGATCCGTTCACAACCAATCCATCACTACTCCGTCTCCAGCAAAATCAAGACCTATTCAAGTCCGATCGTCAAGCCCTCGTTGTGTTCGAGAAGATAGAAGCTACCATCACACCTCTCAAACACCAAGCTTAAGGTCTAATTACCATTACAATGGGAACTTGTACCAAAATAGTAGGGGTGGAACAAGTAATGGTAGTAGTAATAGTATTGCTTCTACTACTGCTTCAGCTACATTGCCTAATTACATGCAAGCAACCGAGTCTGCGAAGGCTCGGATTCGGTCACAGAGTGCGCCAAGGCAAAGGCCATCGACTCCAGAGAGGGATAGATCCGGATCAGTAAAGAAAAGACTTTCTTTCCCTGCTCCTGATCCTTATAATGTAGGAGGAGTTGGTTATGGAAATTATGGACATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGAATGTAGCAGCATCACATTATGGATTGGAGCAAAATTCCAATTACTCTTCTTGTTGTACTGAGAGTCTCGGTGGCGAGGTTTCGCCTTCTTCAACCGGTGACCTTAGACGGTGGTTGAGATGA
Protein sequence

>Msa1176020

MGKKGSSSWLTAVKRAFRSPTKDSEKRSGRRREDCDQEEDEEKKREKRRWIFRKPVNHETVNNTQQSTPTKLKHDVVSATSVASRTDQDEKHALAVAMATAEAARATAQAAVEVARLTKSSNHAREHYAAARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSTSHDGSRKSTFSDTASVWDSRYLQDISDRKSISREGSSIADDWDDRPHTVEEVKAMLQQRKEAAMKREKTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDSIKTVEVDTSQPYSYLGANYRRSHPNYQYNPHHQPQRHSIASPLHRSHQNGSVHNQSITTPSPAKSRPIQVRSSSPRCVREDRSYHHTSQTPSLRSNYHYNGNLYQNSRGGTSNGSSNSIASTTASATLPNYMQATESAKARIRSQSAPRQRPSTPERDRSGSVKKRLSFPAPDPYNVGGVGYGNYGHSLRSPSFKSVNVAASHYGLEQNSNYSSCCTESLGGEVSPSSTGDLRRWLR*