AlfalfaGEDB | Msa1176810

M. sativa cultivar zhongmu-4 / Msa1176810

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0207290	Msa1176810	0.832031	1.191687e-55	-8.615850e-47
Msa0313560	Msa1176810	0.804711	1.894377e-49	-8.615850e-47
Msa0861920	Msa1176810	0.824609	7.357248e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 105 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACCACGGACACCCA+AGG	0.638414	8_1:-9024447	None:intergenic
AAAATGTTGCAATGGATGGG+AGG	0.633582	8_1:+9021400	Msa1176810:CDS
AAACGCCGATATGTATATAC+AGG	0.414217	8_1:-9024266	None:intergenic
AAATTCAATACATTGTTGGA+CGG	0.610820	8_1:+9020917	None:intergenic
AACAAAATATATATGGAATT+GGG	0.431675	8_1:+9022628	Msa1176810:CDS
AACCATTAAGCAACCAAAAT+TGG	0.193707	8_1:+9024746	Msa1176810:three_prime_UTR
AACCGAATAATAAATTGAGA+AGG	0.609459	8_1:-9022744	None:intergenic
AACGATCCAAAATAATCTAA+AGG	0.512793	8_1:-9024310	None:intergenic
AACGCCGATATGTATATACA+GGG	0.683032	8_1:-9024265	None:intergenic
AACGTGATGCATGAAGTTGA+AGG	0.592616	8_1:+9024784	Msa1176810:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTCTGTGCAATCTAAT+TGG	-	chr8_1:9020986-9021005	None:intergenic	30.0%
AGGAAGAAAAGAAATCACAT+AGG	-	chr8_1:9021049-9021068	None:intergenic	30.0%
ACAACTCATTTCTCAAAAAG+AGG	+	chr8_1:9021170-9021189	Msa1176810:CDS	30.0%
TCAATCTCTCAAAAACACAA+TGG	-	chr8_1:9021273-9021292	None:intergenic	30.0%
TCAAAAGCAAAAGTCATCAA+TGG	-	chr8_1:9021345-9021364	None:intergenic	30.0%
GATGAATAAACACCAAGAAT+GGG	-	chr8_1:9021495-9021514	None:intergenic	30.0%
AGATGAATAAACACCAAGAA+TGG	-	chr8_1:9021496-9021515	None:intergenic	30.0%
AAGCATGCCAATTTATATAG+AGG	-	chr8_1:9021547-9021566	None:intergenic	30.0%
AATACTAAAGTGACTGTAGT+AGG	+	chr8_1:9022205-9022224	Msa1176810:intron	30.0%
ATTGTAGTGTGTCAATAGTT+TGG	+	chr8_1:9022289-9022308	Msa1176810:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	9020931	9025305	9020931	ID=Msa1176810;Name=Msa1176810
chr8_1	mRNA	9020931	9025305	9020931	ID=Msa1176810-mRNA-1;Parent=Msa1176810;Name=Msa1176810-mRNA-1;_AED=0.12;_eAED=0.12;_QI=81\|0.6\|0.66\|1\|0.2\|0.33\|6\|1319\|184
chr8_1	exon	9020931	9021233	9020931	ID=Msa1176810-mRNA-1:exon:3040;Parent=Msa1176810-mRNA-1
chr8_1	exon	9021388	9021444	9021388	ID=Msa1176810-mRNA-1:exon:3041;Parent=Msa1176810-mRNA-1
chr8_1	exon	9022402	9022427	9022402	ID=Msa1176810-mRNA-1:exon:3042;Parent=Msa1176810-mRNA-1
chr8_1	exon	9022542	9022763	9022542	ID=Msa1176810-mRNA-1:exon:3043;Parent=Msa1176810-mRNA-1
chr8_1	exon	9022871	9022934	9022871	ID=Msa1176810-mRNA-1:exon:3044;Parent=Msa1176810-mRNA-1
chr8_1	exon	9024023	9025305	9024023	ID=Msa1176810-mRNA-1:exon:3045;Parent=Msa1176810-mRNA-1
chr8_1	five_prime_UTR	9020931	9021011	9020931	ID=Msa1176810-mRNA-1:five_prime_utr;Parent=Msa1176810-mRNA-1
chr8_1	CDS	9021012	9021233	9021012	ID=Msa1176810-mRNA-1:cds;Parent=Msa1176810-mRNA-1
chr8_1	CDS	9021388	9021444	9021388	ID=Msa1176810-mRNA-1:cds;Parent=Msa1176810-mRNA-1
chr8_1	CDS	9022402	9022427	9022402	ID=Msa1176810-mRNA-1:cds;Parent=Msa1176810-mRNA-1
chr8_1	CDS	9022542	9022763	9022542	ID=Msa1176810-mRNA-1:cds;Parent=Msa1176810-mRNA-1
chr8_1	CDS	9022871	9022898	9022871	ID=Msa1176810-mRNA-1:cds;Parent=Msa1176810-mRNA-1
chr8_1	three_prime_UTR	9022899	9022934	9022899	ID=Msa1176810-mRNA-1:three_prime_utr;Parent=Msa1176810-mRNA-1
chr8_1	three_prime_UTR	9024023	9025305	9024023	ID=Msa1176810-mRNA-1:three_prime_utr;Parent=Msa1176810-mRNA-1

Gene Sequence

>Msa1176810

ATGATACTCCTCACTTCTACATCTTTTCACGTTTCCTATGTGATTTCTTTTCTTCCTCTCTCTACAGAACCCTCTACCATAACACCATCGCCTCCTCCAAATCCTCTGGTTCTACCTCCACCACTTCTCCCCTCTCTCTTACAAACCAAACACAAGAAACAACTCATTTCTCAAAAAGAGGCAGAAGCTATGAGACTTTCTCAATTTATTATTATTATTCAGATCGCATCTCGCAAAATGTTGCAATGGATGGGAGGATCGATTCTGGAAGTTAATGCTGAACAGAAATGCTATGATGTTGCGATGCCACAAATCTGCAACAATCACTTGAAGAAAGTCACATGTTGGGTCGTAAAATGCAACGTAGATGCAGGCACACCTCTATTTTATCAACAAAATATATATGGAATTGGGATATGCATCCACAATGACAGAGTTGAATTCATCCGAGCAAAAACCAAACACAAGAAACAACTCCTTTCTCCAAAAGAGGCAGAAGCTATGAGACCTTCTCAATTTATTATTCGGTTTCAGATCGCACCTCGCACGATGTAG

Protein sequence

>Msa1176810

MILLTSTSFHVSYVISFLPLSTEPSTITPSPPPNPLVLPPPLLPSLLQTKHKKQLISQKEAEAMRLSQFIIIIQIASRKMLQWMGGSILEVNAEQKCYDVAMPQICNNHLKKVTCWVVKCNVDAGTPLFYQQNIYGIGICIHNDRVEFIRAKTKHKKQLLSPKEAEAMRPSQFIIRFQIAPRTM*