AlfalfaGEDB | Msa1177720

M. sativa cultivar zhongmu-4 / Msa1177720

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1177720	XP_013444782.1	96.997	333	10	0	38	370	1	333	0.0	663

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1177720	sp\|C0SVG5\|RVE5_ARATH	56.452	310	117	8	38	342	1	297	3.01e-108	322

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1177720	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1177720	Msa1317810	0.966854	1.764720e-126	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1177720	MtrunA17_Chr8g0348391	96.997	333	10	0	38	370	1	333	0.0	663
Msa1177720	MtrunA17_Chr1g0181771	54.406	261	93	5	89	343	35	275	4.07e-85	260
Msa1177720	MtrunA17_Chr6g0469431	65.946	185	48	4	38	222	1	170	2.96e-74	229
Msa1177720	MtrunA17_Chr3g0109791	40.884	181	90	3	61	224	17	197	5.55e-26	107
Msa1177720	MtrunA17_Chr6g0469441	77.193	57	13	0	279	335	23	79	5.65e-26	100
Msa1177720	MtrunA17_Chr6g0481061	54.255	94	35	2	90	175	46	139	2.72e-25	106
Msa1177720	MtrunA17_Chr5g0433851	44.767	172	69	6	86	238	28	192	1.95e-24	103
Msa1177720	MtrunA17_Chr7g0276421	59.459	74	30	0	78	151	3	76	9.36e-24	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1177720	AT4G01280.1	56.494	308	119	6	38	342	1	296	6.58e-110	323
Msa1177720	AT4G01280.2	56.452	310	117	8	38	342	1	297	3.06e-109	322
Msa1177720	AT5G52660.2	53.968	315	118	5	51	349	9	312	6.40e-103	307
Msa1177720	AT5G52660.1	53.968	315	117	5	51	349	9	311	1.07e-102	306
Msa1177720	AT1G01520.1	53.355	313	111	9	38	343	1	285	2.12e-102	304
Msa1177720	AT1G01520.3	53.420	307	108	9	38	337	1	279	6.37e-99	295
Msa1177720	AT3G09600.1	53.125	288	104	7	65	343	11	276	2.97e-89	271
Msa1177720	AT3G09600.7	53.125	288	104	7	65	343	11	276	2.97e-89	271
Msa1177720	AT1G01520.2	52.098	286	102	9	38	316	1	258	1.78e-86	262
Msa1177720	AT1G01520.4	52.098	286	102	9	38	316	1	258	1.78e-86	262

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Find 129 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGTGGTGTTGGATT+AGG	0.259526	8_1:-10121871	None:intergenic
AAAGCAGGTGAAGGTTGCAA+TGG	0.602544	8_1:-10124452	None:intergenic
AAAGTGCATCCTCTTGTCAA+AGG	0.615129	8_1:-10127369	None:intergenic
AAATGCCGTTCTGTCTACTT+AGG	0.437086	8_1:+10126867	Msa1177720:CDS
AACAAACCTGTAGTCACTTG+TGG	0.599352	8_1:-10124587	None:intergenic
AACACCCTAAGTAGACAGAA+CGG	0.678268	8_1:-10126872	None:intergenic
AACCCTAATCCAACACCACA+AGG	0.612459	8_1:+10121868	Msa1177720:CDS
AACCTTGTGGTGTTGGATTA+GGG	0.281198	8_1:-10121870	None:intergenic
AACGGTAGATGCTGCCGCGG+CGG	0.630207	8_1:-10121971	None:intergenic
AACTTTGCCTTCTCGCAGTC+AGG	0.399115	8_1:-10126805	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTAATGGTATATGGTTTC+CGG	-	chr8_1:10122020-10122039	None:intergenic	30.0%
ACTCTCTCTAGATTTAGTAA+TGG	-	chr8_1:10122034-10122053	None:intergenic	30.0%
TTACTAAATCTAGAGAGAGT+TGG	+	chr8_1:10122034-10122053	Msa1177720:CDS	30.0%
TTGTGGAAATTGATTATGTC+GGG	+	chr8_1:10122162-10122181	Msa1177720:intron	30.0%
TACGATTATTTATTGGGGAA+AGG	+	chr8_1:10122248-10122267	Msa1177720:intron	30.0%
TATTTATTGGGGAAAGGATT+AGG	+	chr8_1:10122254-10122273	Msa1177720:intron	30.0%
ATTTATTGGGGAAAGGATTA+GGG	+	chr8_1:10122255-10122274	Msa1177720:intron	30.0%
AAATAAGTCCCTATTCAAAC+AGG	-	chr8_1:10122282-10122301	None:intergenic	30.0%
AATAACTAAGCAAAAGACAG+GGG	-	chr8_1:10122705-10122724	None:intergenic	30.0%
CAATAACTAAGCAAAAGACA+GGG	-	chr8_1:10122706-10122725	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	10121745	10127548	10121745	ID=Msa1177720;Name=Msa1177720
chr8_1	mRNA	10121745	10127548	10121745	ID=Msa1177720-mRNA-1;Parent=Msa1177720;Name=Msa1177720-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|1\|1\|1\|1\|1\|8\|660\|370
chr8_1	exon	10121745	10122097	10121745	ID=Msa1177720-mRNA-1:exon:3493;Parent=Msa1177720-mRNA-1
chr8_1	exon	10123794	10123851	10123794	ID=Msa1177720-mRNA-1:exon:3494;Parent=Msa1177720-mRNA-1
chr8_1	exon	10124208	10124331	10124208	ID=Msa1177720-mRNA-1:exon:3495;Parent=Msa1177720-mRNA-1
chr8_1	exon	10124423	10124602	10124423	ID=Msa1177720-mRNA-1:exon:3496;Parent=Msa1177720-mRNA-1
chr8_1	exon	10124712	10124831	10124712	ID=Msa1177720-mRNA-1:exon:3497;Parent=Msa1177720-mRNA-1
chr8_1	exon	10126233	10126342	10126233	ID=Msa1177720-mRNA-1:exon:3498;Parent=Msa1177720-mRNA-1
chr8_1	exon	10126492	10126551	10126492	ID=Msa1177720-mRNA-1:exon:3499;Parent=Msa1177720-mRNA-1
chr8_1	exon	10126781	10127548	10126781	ID=Msa1177720-mRNA-1:exon:3500;Parent=Msa1177720-mRNA-1
chr8_1	CDS	10121745	10122097	10121745	ID=Msa1177720-mRNA-1:cds;Parent=Msa1177720-mRNA-1
chr8_1	CDS	10123794	10123851	10123794	ID=Msa1177720-mRNA-1:cds;Parent=Msa1177720-mRNA-1
chr8_1	CDS	10124208	10124331	10124208	ID=Msa1177720-mRNA-1:cds;Parent=Msa1177720-mRNA-1
chr8_1	CDS	10124423	10124602	10124423	ID=Msa1177720-mRNA-1:cds;Parent=Msa1177720-mRNA-1
chr8_1	CDS	10124712	10124831	10124712	ID=Msa1177720-mRNA-1:cds;Parent=Msa1177720-mRNA-1
chr8_1	CDS	10126233	10126342	10126233	ID=Msa1177720-mRNA-1:cds;Parent=Msa1177720-mRNA-1
chr8_1	CDS	10126492	10126551	10126492	ID=Msa1177720-mRNA-1:cds;Parent=Msa1177720-mRNA-1
chr8_1	CDS	10126781	10126888	10126781	ID=Msa1177720-mRNA-1:cds;Parent=Msa1177720-mRNA-1
chr8_1	three_prime_UTR	10126889	10127548	10126889	ID=Msa1177720-mRNA-1:three_prime_utr;Parent=Msa1177720-mRNA-1

Gene Sequence

>Msa1177720

CGTTTATCAAAACCAAAAACACTGCGAACAAAACAAAACAAAGACAAGAACAACAGTAAAGTAAACTACACATCCAACGCACGCGAGATAATCGAAATTACGGTTTTGGTTATGGTATCTATAAACCCTAATCCAACACCACAAGGTTTCTACTTCTTCGATCCTTCAACTATGGGTCTTCCCGGTGTTAACAATCTTCCTCCTCCACCGCCGCCGCCATCTACTACCGCCGCGGCAGCATCTACCGTTTCTGAGGATCCGAATAAGAAGATCCGGAAACCATATACCATTACTAAATCTAGAGAGAGTTGGACTGATCAGGAACATGATAAGTTTCTAGAAGCTCTTCAATTATTCGATCGTGATTGGAAGAAGATTGAAGCCTTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAGTATTTTCTCAAAGTTCAGAAGAGTGGAACAAGTGAACATGTCCCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCCAAAAATGCTCCTACTGCATCCCCCCAAGTCATGGGGCCATTGCAACCTTCACCTGCTTTTCTTGACCCAACTTACATTTATAGCACAGATTCATCATCTGTGCTTGGTACACCAGTTACTAATCTGCCTTTATCATCTCTGAATTTTAACGCTCCACCACCAACCAGTTTGCCACAAGTGACTACAGACGACACAGGATGGACTGGATCTGGACAAGCTGTTCCTGTTAATTGTTGCTATAGCAGCAGCAATGAGAAGCAAAGTAGTAAAGGGATTAATCAAGGCTGCGCGGGCAAGCCTGTTAAAGTCATGCCAGATTTTGCACAAGTATACCGCTTCATTGGCAGTGTATTTGATCCAAATTCAACCAATCAGCTACAGAGGCTAAAACAGATGGACCCAATAAATGTTGAAACGGCACTGTTGTTGATGAGAAACCTCTCCATTAATTTAACGAGTCCTGAATTTGAGGATCATAAGAGGCTACTGTCATCATATGATCCTGACTGCGAGAAGGCAAAGTTTGCTAATCCAAGCAGCAAATCCATGACTGTAAAATCTGAAAATGCCGTTCTGTCTACTTAG

Protein sequence

>Msa1177720

RLSKPKTLRTKQNKDKNNSKVNYTSNAREIIEITVLVMVSINPNPTPQGFYFFDPSTMGLPGVNNLPPPPPPPSTTAAAASTVSEDPNKKIRKPYTITKSRESWTDQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKNAPTASPQVMGPLQPSPAFLDPTYIYSTDSSSVLGTPVTNLPLSSLNFNAPPPTSLPQVTTDDTGWTGSGQAVPVNCCYSSSNEKQSSKGINQGCAGKPVKVMPDFAQVYRFIGSVFDPNSTNQLQRLKQMDPINVETALLLMRNLSINLTSPEFEDHKRLLSSYDPDCEKAKFANPSSKSMTVKSENAVLST*