Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179440 | XP_013444380.1 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 3.76e-127 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179440 | sp|Q8H1F4|COPZ3_ARATH | 74.302 | 179 | 46 | 0 | 2 | 180 | 3 | 181 | 3.63e-95 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1179440 | Msa1275590 | 0.887308 | 1.599890e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179440 | MtrunA17_Chr8g0342591 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 3.46e-131 | 365 |
| Msa1179440 | MtrunA17_Chr7g0216831 | 85.443 | 158 | 23 | 0 | 10 | 167 | 2 | 159 | 6.09e-99 | 283 |
| Msa1179440 | MtrunA17_Chr2g0291621 | 75.862 | 174 | 42 | 0 | 6 | 179 | 31 | 204 | 7.66e-93 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179440 | AT4G08520.1 | 74.302 | 179 | 46 | 0 | 2 | 180 | 3 | 181 | 3.69e-96 | 276 |
| Msa1179440 | AT3G09800.1 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.99e-94 | 272 |
| Msa1179440 | AT3G09800.4 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.99e-94 | 272 |
| Msa1179440 | AT3G09800.5 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.99e-94 | 272 |
| Msa1179440 | AT3G09800.6 | 75.287 | 174 | 43 | 0 | 7 | 180 | 86 | 259 | 3.56e-93 | 272 |
| Msa1179440 | AT1G60970.1 | 74.138 | 174 | 45 | 0 | 6 | 179 | 3 | 176 | 1.96e-92 | 267 |
| Msa1179440 | AT3G09800.2 | 72.358 | 123 | 34 | 0 | 58 | 180 | 18 | 140 | 3.12e-58 | 179 |
| Msa1179440 | AT3G09800.3 | 72.358 | 123 | 34 | 0 | 58 | 180 | 18 | 140 | 3.12e-58 | 179 |
Find 49 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATCATCCTTGGATTAA+AGG | 0.209366 | 8_1:-12861829 | Msa1179440:three_prime_UTR |
| TCCAAGTTATTGTGAAGATT+TGG | 0.304253 | 8_1:-12861787 | Msa1179440:three_prime_UTR |
| GAGCATCAGCATCCATGTTA+TGG | 0.360054 | 8_1:+12862336 | None:intergenic |
| TGCCTTGACGAGATCGTTGA+TGG | 0.379967 | 8_1:-12862492 | Msa1179440:CDS |
| TTAAAGGCAACCTAGATGTT+TGG | 0.382170 | 8_1:-12861813 | Msa1179440:three_prime_UTR |
| GATGCGATAAAGTGTGAATT+TGG | 0.388631 | 8_1:+12865147 | None:intergenic |
| TGAATTTGGTGCTTCGAGTT+TGG | 0.396262 | 8_1:+12865161 | None:intergenic |
| GCCATAAATACCTAAGCAAA+AGG | 0.399888 | 8_1:+12862636 | None:intergenic |
| CGCTGCGATATATGAATTTG+AGG | 0.407306 | 8_1:+12865191 | None:intergenic |
| AGGATTATACTTGAAACAAA+TGG | 0.413540 | 8_1:-12862386 | Msa1179440:CDS |
| TTGAGGTAAACAATCATCCT+TGG | 0.423937 | 8_1:-12861837 | Msa1179440:three_prime_UTR |
| ATGGAAGAACTTAAAATTTG+AGG | 0.424997 | 8_1:-12861854 | Msa1179440:three_prime_UTR |
| AAACATTACCTGCTCTGATA+AGG | 0.429223 | 8_1:+12862313 | None:intergenic |
| GAAAATAACATCAGGGGTAC+AGG | 0.431866 | 8_1:+12861883 | None:intergenic |
| GCTAACTTTGAACTGTTTGT+CGG | 0.435629 | 8_1:+12863768 | None:intergenic |
| AACATTACCTGCTCTGATAA+GGG | 0.439938 | 8_1:+12862314 | None:intergenic |
| TCCAGTCTTCTGCTAAGATC+TGG | 0.445089 | 8_1:-12861975 | Msa1179440:three_prime_UTR |
| AGCATCAGCATCCATGTTAT+GGG | 0.455423 | 8_1:+12862337 | None:intergenic |
| AAGTGAGGCACTTGAGAACT+TGG | 0.464349 | 8_1:-12862529 | Msa1179440:CDS |
| ATACATTGGAAAATAACATC+AGG | 0.470933 | 8_1:+12861875 | None:intergenic |
| TCCAGATCTTAGCAGAAGAC+TGG | 0.473267 | 8_1:+12861974 | None:intergenic |
| AGTTCTTGTGAAAGTGTCTC+TGG | 0.483853 | 8_1:+12862150 | None:intergenic |
| GACTTGCATTTCTTTGTCAC+CGG | 0.485386 | 8_1:-12862722 | Msa1179440:CDS |
| ACTTGGATATCCAAACATCT+AGG | 0.495546 | 8_1:+12861803 | None:intergenic |
| ACCAAATCTTCACAATAACT+TGG | 0.506075 | 8_1:+12861786 | None:intergenic |
| AAGACAAATGCGCGGACAGA+AGG | 0.541218 | 8_1:-12863714 | Msa1179440:intron |
| TGCAGACACTAACTCAGGCA+TGG | 0.549441 | 8_1:-12862180 | Msa1179440:intron |
| TCTAGGTTGCCTTTAATCCA+AGG | 0.549905 | 8_1:+12861820 | None:intergenic |
| GATATATGAATTTGAGGAGA+AGG | 0.552551 | 8_1:+12865197 | None:intergenic |
| TGATGCTCCCTTATCAGAGC+AGG | 0.557847 | 8_1:-12862321 | Msa1179440:intron |
| AAAAGTTACCTCCCATAACA+TGG | 0.559199 | 8_1:-12862348 | Msa1179440:CDS |
| TACATTGGAAAATAACATCA+GGG | 0.563650 | 8_1:+12861876 | None:intergenic |
| CCATAAATACCTAAGCAAAA+GGG | 0.568954 | 8_1:+12862637 | None:intergenic |
| TCAAGTATTACTCAGATGAC+TGG | 0.569025 | 8_1:-12863791 | Msa1179440:CDS |
| CATCCTTCTTCTCTCAGACA+TGG | 0.576318 | 8_1:-12865128 | Msa1179440:exon |
| AAAATACAGATTCAAATGGA+GGG | 0.577075 | 8_1:+12862029 | None:intergenic |
| TTGCATTTCTTTGTCACCGG+TGG | 0.580685 | 8_1:-12862719 | Msa1179440:CDS |
| GCAGACACTAACTCAGGCAT+GGG | 0.586167 | 8_1:-12862179 | Msa1179440:intron |
| ATGCCATGTCTGAGAGAAGA+AGG | 0.595655 | 8_1:+12865125 | None:intergenic |
| GATATTGCAGACACTAACTC+AGG | 0.599164 | 8_1:-12862185 | Msa1179440:intron |
| CTCCATCAACGATCTCGTCA+AGG | 0.600844 | 8_1:+12862490 | None:intergenic |
| TTAGTATATGATATATGATG+TGG | 0.614612 | 8_1:+12861762 | None:intergenic |
| CTTGACGAGATCGTTGATGG+AGG | 0.615640 | 8_1:-12862489 | Msa1179440:CDS |
| TTGACGAGATCGTTGATGGA+GGG | 0.639948 | 8_1:-12862488 | Msa1179440:intron |
| ATCAGCATCCATGTTATGGG+AGG | 0.659855 | 8_1:+12862340 | None:intergenic |
| GAGCAATGTTGACAAAAGTG+AGG | 0.698747 | 8_1:-12862544 | Msa1179440:CDS |
| ACATTGGAAAATAACATCAG+GGG | 0.719329 | 8_1:+12861877 | None:intergenic |
| TTAACATGATGCACTCATGG+TGG | 0.752491 | 8_1:-12862124 | Msa1179440:exon |
| AGACTGTTAAGACAAATGCG+CGG | 0.799828 | 8_1:-12863722 | Msa1179440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAGAAGAATGTTTTTTA+TGG | + | chr8_1:12863146-12863165 | None:intergenic | 15.0% |
| !! | TATTATTATATTATGCAGTT+TGG | - | chr8_1:12863431-12863450 | Msa1179440:intron | 15.0% |
| !!! | TTTTTGATACATTCAAATAA+AGG | + | chr8_1:12863862-12863881 | None:intergenic | 15.0% |
| !! | AAAGAATAAATAAACTTTCA+TGG | + | chr8_1:12864554-12864573 | None:intergenic | 15.0% |
| !!! | AACCATATGAATCATATTTT+AGG | - | chr8_1:12862168-12862187 | Msa1179440:CDS | 20.0% |
| !! | ATCCTAAAATATGATTCATA+TGG | + | chr8_1:12862173-12862192 | None:intergenic | 20.0% |
| !!! | ATGAATCATATTTTAGGATT+TGG | - | chr8_1:12862174-12862193 | Msa1179440:CDS | 20.0% |
| !!! | TGAATCATATTTTAGGATTT+GGG | - | chr8_1:12862175-12862194 | Msa1179440:CDS | 20.0% |
| !!! | AGTTTATTTTTTGTGTTTGT+TGG | - | chr8_1:12862207-12862226 | Msa1179440:intron | 20.0% |
| !! | AATTAATAGACTTCATATCA+TGG | + | chr8_1:12863321-12863340 | None:intergenic | 20.0% |
| !!! | TTCATAACCATTTTATATCT+TGG | - | chr8_1:12863590-12863609 | Msa1179440:intron | 20.0% |
| !! | ATTTCATCCAAGATATAAAA+TGG | + | chr8_1:12863600-12863619 | None:intergenic | 20.0% |
| !! | CAGTTAATATAAATCACATA+GGG | + | chr8_1:12863926-12863945 | None:intergenic | 20.0% |
| !! | TCAGTTAATATAAATCACAT+AGG | + | chr8_1:12863927-12863946 | None:intergenic | 20.0% |
| !! | TCAAAAAATACAGATTCAAA+TGG | + | chr8_1:12864960-12864979 | None:intergenic | 20.0% |
| ! | GAGCTTATTCTAATCAATTT+AGG | - | chr8_1:12862033-12862052 | Msa1179440:three_prime_UTR | 25.0% |
| ! | ATTCTAATCAATTTAGGAAC+TGG | - | chr8_1:12862039-12862058 | Msa1179440:three_prime_UTR | 25.0% |
| ! | TTCTAATCAATTTAGGAACT+GGG | - | chr8_1:12862040-12862059 | Msa1179440:three_prime_UTR | 25.0% |
| !!! | TATTTTTTGTGTTTGTTGGT+TGG | - | chr8_1:12862211-12862230 | Msa1179440:intron | 25.0% |
| !!! | ACAGGGATAAATGTTTTAAA+CGG | + | chr8_1:12862323-12862342 | None:intergenic | 25.0% |
| !!! | GCTTTGTTATAGCAAATTTT+TGG | - | chr8_1:12862359-12862378 | Msa1179440:CDS | 25.0% |
| ! | AAACTAAAATCTGATGGTTA+GGG | - | chr8_1:12862436-12862455 | Msa1179440:intron | 25.0% |
| ! | CTGTAACTTAAATAGTGTAT+TGG | + | chr8_1:12862592-12862611 | None:intergenic | 25.0% |
| ! | AAACAAAATGCAAGCAAAAT+GGG | + | chr8_1:12863000-12863019 | None:intergenic | 25.0% |
| ! | AAAACAAAATGCAAGCAAAA+TGG | + | chr8_1:12863001-12863020 | None:intergenic | 25.0% |
| !!! | GTTTTGCAAATTTGAAATCA+CGG | - | chr8_1:12863032-12863051 | Msa1179440:intron | 25.0% |
| !!! | TTTTGCAAATTTGAAATCAC+GGG | - | chr8_1:12863033-12863052 | Msa1179440:intron | 25.0% |
| !!! | AGAAGAATGTTTTTTATGGA+AGG | + | chr8_1:12863142-12863161 | None:intergenic | 25.0% |
| ! | TTATATTATGCAGTTTGGTT+TGG | - | chr8_1:12863436-12863455 | Msa1179440:intron | 25.0% |
| ! | GTGAAAGTAAATAGAACTAT+TGG | + | chr8_1:12863495-12863514 | None:intergenic | 25.0% |
| !!! | TCATTTTATCATTTAGCTCA+AGG | + | chr8_1:12863564-12863583 | None:intergenic | 25.0% |
| ! | TCAACTGTTTACATATATAC+CGG | + | chr8_1:12863659-12863678 | None:intergenic | 25.0% |
| ! | TGCATCACAATTTAAGAAAT+AGG | - | chr8_1:12863722-12863741 | Msa1179440:CDS | 25.0% |
| ! | TTTCAACTAATACACTTGAA+AGG | + | chr8_1:12863821-12863840 | None:intergenic | 25.0% |
| !!! | ACTGATTTTTAACTTGTGAA+TGG | - | chr8_1:12863995-12864014 | Msa1179440:intron | 25.0% |
| !!! | TCTTTTATTTGTTTCCCTTT+TGG | - | chr8_1:12864053-12864072 | Msa1179440:intron | 25.0% |
| !!! | CTTTTATTTGTTTCCCTTTT+GGG | - | chr8_1:12864054-12864073 | Msa1179440:intron | 25.0% |
| ! | AATAAAACAACAGATACCAA+TGG | + | chr8_1:12864116-12864135 | None:intergenic | 25.0% |
| !! | TTTTCCGAATTAAAATCAGA+TGG | - | chr8_1:12864385-12864404 | Msa1179440:intron | 25.0% |
| ! | TTTCCGAATTAAAATCAGAT+GGG | - | chr8_1:12864386-12864405 | Msa1179440:intron | 25.0% |
| !!! | ATACCCATCTGATTTTAATT+CGG | + | chr8_1:12864392-12864411 | None:intergenic | 25.0% |
| ! | TTCATGGAAAAGAAAATATG+TGG | + | chr8_1:12864538-12864557 | None:intergenic | 25.0% |
| ! | AGGATTATACTTGAAACAAA+TGG | - | chr8_1:12864596-12864615 | Msa1179440:intron | 25.0% |
| ! | AAAATACAGATTCAAATGGA+GGG | + | chr8_1:12864956-12864975 | None:intergenic | 25.0% |
| ! | AAAAATACAGATTCAAATGG+AGG | + | chr8_1:12864957-12864976 | None:intergenic | 25.0% |
| !!! | TTTTCTGAATTCAAGTTACT+GGG | - | chr8_1:12865036-12865055 | Msa1179440:intron | 25.0% |
| ! | TACATTGGAAAATAACATCA+GGG | + | chr8_1:12865109-12865128 | None:intergenic | 25.0% |
| ! | ATACATTGGAAAATAACATC+AGG | + | chr8_1:12865110-12865129 | None:intergenic | 25.0% |
| !!! | TGATGTTATTTTCCAATGTA+TGG | - | chr8_1:12865109-12865128 | Msa1179440:intron | 25.0% |
| !!! | TTTTAAGTTCTTCCATACAT+TGG | + | chr8_1:12865124-12865143 | None:intergenic | 25.0% |
| ! | ATGGAAGAACTTAAAATTTG+AGG | - | chr8_1:12865128-12865147 | Msa1179440:exon | 25.0% |
| GATATATGAATTTGAGGAGA+AGG | + | chr8_1:12861788-12861807 | None:intergenic | 30.0% | |
| TTTCTTTCTTTCTGTTGTGA+TGG | - | chr8_1:12862001-12862020 | Msa1179440:three_prime_UTR | 30.0% | |
| !! | TCTGTTTTTCGTTTGTTTCT+TGG | - | chr8_1:12862076-12862095 | Msa1179440:three_prime_UTR | 30.0% |
| ! | ACTGATTCATGTGAAAACTA+TGG | - | chr8_1:12862106-12862125 | Msa1179440:three_prime_UTR | 30.0% |
| CTGATTCATGTGAAAACTAT+GGG | - | chr8_1:12862107-12862126 | Msa1179440:three_prime_UTR | 30.0% | |
| !! | TATGTTACTTTCTGTTCTGA+TGG | - | chr8_1:12862139-12862158 | Msa1179440:CDS | 30.0% |
| ! | CGTTTAGTGATTTGAACTTT+TGG | - | chr8_1:12862236-12862255 | Msa1179440:intron | 30.0% |
| CATAACAAACAATCACTACA+GGG | + | chr8_1:12862340-12862359 | None:intergenic | 30.0% | |
| TATAATCGATGTGAAGAGAA+AGG | - | chr8_1:12862392-12862411 | Msa1179440:intron | 30.0% | |
| !!! | GGTTATGTTTTTTGTCTTGA+TGG | - | chr8_1:12862413-12862432 | Msa1179440:intron | 30.0% |
| TGATGGAAACTAAAATCTGA+TGG | - | chr8_1:12862430-12862449 | Msa1179440:intron | 30.0% | |
| GAAACTAAAATCTGATGGTT+AGG | - | chr8_1:12862435-12862454 | Msa1179440:intron | 30.0% | |
| TAAACACAAATCTTCAACAC+AGG | + | chr8_1:12862488-12862507 | None:intergenic | 30.0% | |
| CTGTCAATTGCAGATAATAA+CGG | + | chr8_1:12862674-12862693 | None:intergenic | 30.0% | |
| ! | TTTGCAAATTTGAAATCACG+GGG | - | chr8_1:12863034-12863053 | Msa1179440:intron | 30.0% |
| ! | ACTGTAATTTTCACATATGC+TGG | + | chr8_1:12863072-12863091 | None:intergenic | 30.0% |
| ! | ATTCTTCTTTTAGACTCTGA+AGG | - | chr8_1:12863154-12863173 | Msa1179440:intron | 30.0% |
| ! | TTCTTCTTTTAGACTCTGAA+GGG | - | chr8_1:12863155-12863174 | Msa1179440:intron | 30.0% |
| TAAATTGATATATGCACCAC+TGG | + | chr8_1:12863368-12863387 | None:intergenic | 30.0% | |
| !! | AGATATGTAGCTTTGTTTGT+AGG | - | chr8_1:12863407-12863426 | Msa1179440:intron | 30.0% |
| CATGAACGTCAATAAGTAAA+AGG | + | chr8_1:12863472-12863491 | None:intergenic | 30.0% | |
| TTTATCTCACTCAAATCAGT+TGG | - | chr8_1:12863630-12863649 | Msa1179440:intron | 30.0% | |
| CACAATTTAAGAAATAGGCT+CGG | - | chr8_1:12863727-12863746 | Msa1179440:CDS | 30.0% | |
| CTTGAAAGGATGTTTGATTA+GGG | + | chr8_1:12863807-12863826 | None:intergenic | 30.0% | |
| ACTTGAAAGGATGTTTGATT+AGG | + | chr8_1:12863808-12863827 | None:intergenic | 30.0% | |
| CAAAATGAAATACCAGTAGA+GGG | + | chr8_1:12863901-12863920 | None:intergenic | 30.0% | |
| ACAAAATGAAATACCAGTAG+AGG | + | chr8_1:12863902-12863921 | None:intergenic | 30.0% | |
| AACTGATTGAAATGTTCACA+AGG | - | chr8_1:12863941-12863960 | Msa1179440:intron | 30.0% | |
| !!! | TGCATTTTGATTTCCCAAAA+GGG | + | chr8_1:12864070-12864089 | None:intergenic | 30.0% |
| !!! | TTGCATTTTGATTTCCCAAA+AGG | + | chr8_1:12864071-12864090 | None:intergenic | 30.0% |
| AAAACACTCTTCAATACCAT+TGG | - | chr8_1:12864097-12864116 | Msa1179440:intron | 30.0% | |
| ! | ATTTTGTCATCTGTTCTTCA+AGG | - | chr8_1:12864305-12864324 | Msa1179440:intron | 30.0% |
| CCATAAATACCTAAGCAAAA+GGG | + | chr8_1:12864348-12864367 | None:intergenic | 30.0% | |
| AATCCTTCAAGCAAAAAATG+AGG | + | chr8_1:12864582-12864601 | None:intergenic | 30.0% | |
| TCAGTAAAGTATGCTTTCTA+TGG | - | chr8_1:12864716-12864735 | Msa1179440:intron | 30.0% | |
| AAAAGTCAATGTCAGATTGA+AGG | + | chr8_1:12864776-12864795 | None:intergenic | 30.0% | |
| !! | CTTTTCTGAATTCAAGTTAC+TGG | - | chr8_1:12865035-12865054 | Msa1179440:intron | 30.0% |
| ACATTGGAAAATAACATCAG+GGG | + | chr8_1:12865108-12865127 | None:intergenic | 30.0% | |
| AACAATCATCCTTGGATTAA+AGG | - | chr8_1:12865153-12865172 | Msa1179440:five_prime_UTR | 30.0% | |
| TCCAAGTTATTGTGAAGATT+TGG | - | chr8_1:12865195-12865214 | Msa1179440:five_prime_UTR | 30.0% | |
| ACCAAATCTTCACAATAACT+TGG | + | chr8_1:12865199-12865218 | None:intergenic | 30.0% | |
| GATGCGATAAAGTGTGAATT+TGG | + | chr8_1:12861838-12861857 | None:intergenic | 35.0% | |
| AAAGATAGAGAAGCTTACGT+TGG | + | chr8_1:12861883-12861902 | None:intergenic | 35.0% | |
| TGGAGTGATTTAACGTTGAA+TGG | - | chr8_1:12862256-12862275 | Msa1179440:intron | 35.0% | |
| GGAGTGATTTAACGTTGAAT+GGG | - | chr8_1:12862257-12862276 | Msa1179440:intron | 35.0% | |
| GCATAACAAACAATCACTAC+AGG | + | chr8_1:12862341-12862360 | None:intergenic | 35.0% | |
| !! | AATATTATCGGTGTCGTATC+TGG | - | chr8_1:12862861-12862880 | Msa1179440:intron | 35.0% |
| ! | TCTTGTTAGTTCTCAATTCC+TGG | + | chr8_1:12862909-12862928 | None:intergenic | 35.0% |
| ! | GAAAATTGCTCTTTTACGAC+TGG | - | chr8_1:12862946-12862965 | Msa1179440:intron | 35.0% |
| ! | TTGCAAATTTGAAATCACGG+GGG | - | chr8_1:12863035-12863054 | Msa1179440:intron | 35.0% |
| TTCCATACTGAAACATCTGT+AGG | - | chr8_1:12863108-12863127 | Msa1179440:intron | 35.0% | |
| TCCATACTGAAACATCTGTA+GGG | - | chr8_1:12863109-12863128 | Msa1179440:intron | 35.0% | |
| TCAAGTATTACTCAGATGAC+TGG | - | chr8_1:12863191-12863210 | Msa1179440:intron | 35.0% | |
| GCTAACTTTGAACTGTTTGT+CGG | + | chr8_1:12863217-12863236 | None:intergenic | 35.0% | |
| CCTCATAAGAAGATAAGTCA+CGG | - | chr8_1:12863533-12863552 | Msa1179440:intron | 35.0% | |
| CTCATAAGAAGATAAGTCAC+GGG | - | chr8_1:12863534-12863553 | Msa1179440:intron | 35.0% | |
| TCATAAGAAGATAAGTCACG+GGG | - | chr8_1:12863535-12863554 | Msa1179440:intron | 35.0% | |
| AAATTGTGATGCAGCAGATA+GGG | + | chr8_1:12863715-12863734 | None:intergenic | 35.0% | |
| TAAATTGTGATGCAGCAGAT+AGG | + | chr8_1:12863716-12863735 | None:intergenic | 35.0% | |
| ATAAAAGAGCAAATACGCCA+GGG | + | chr8_1:12864041-12864060 | None:intergenic | 35.0% | |
| AATAAAAGAGCAAATACGCC+AGG | + | chr8_1:12864042-12864061 | None:intergenic | 35.0% | |
| ! | CCCTTTTGCTTAGGTATTTA+TGG | - | chr8_1:12864345-12864364 | Msa1179440:intron | 35.0% |
| GCCATAAATACCTAAGCAAA+AGG | + | chr8_1:12864349-12864368 | None:intergenic | 35.0% | |
| ! | CATATTTGCGTTCCTTTTAC+AGG | - | chr8_1:12864416-12864435 | Msa1179440:intron | 35.0% |
| !!! | ACACCTCATTTTTTGCTTGA+AGG | - | chr8_1:12864576-12864595 | Msa1179440:intron | 35.0% |
| ! | GTTATGGGAGGTAACTTTTT+CGG | + | chr8_1:12864633-12864652 | None:intergenic | 35.0% |
| AAAAGTTACCTCCCATAACA+TGG | - | chr8_1:12864634-12864653 | Msa1179440:intron | 35.0% | |
| AACATTACCTGCTCTGATAA+GGG | + | chr8_1:12864671-12864690 | None:intergenic | 35.0% | |
| AAACATTACCTGCTCTGATA+AGG | + | chr8_1:12864672-12864691 | None:intergenic | 35.0% | |
| ! | CTTTTAACATGATGCACTCA+TGG | - | chr8_1:12864855-12864874 | Msa1179440:intron | 35.0% |
| TTGAGGTAAACAATCATCCT+TGG | - | chr8_1:12865145-12865164 | Msa1179440:five_prime_UTR | 35.0% | |
| TTAAAGGCAACCTAGATGTT+TGG | - | chr8_1:12865169-12865188 | Msa1179440:five_prime_UTR | 35.0% | |
| ACTTGGATATCCAAACATCT+AGG | + | chr8_1:12865182-12865201 | None:intergenic | 35.0% | |
| CGCTGCGATATATGAATTTG+AGG | + | chr8_1:12861794-12861813 | None:intergenic | 40.0% | |
| !! | TGAATTTGGTGCTTCGAGTT+TGG | + | chr8_1:12861824-12861843 | None:intergenic | 40.0% |
| ATCTGATGGTTAGGGATAAG+AGG | - | chr8_1:12862444-12862463 | Msa1179440:intron | 40.0% | |
| TAAGAGGATGTACTTTGCTG+TGG | - | chr8_1:12862460-12862479 | Msa1179440:intron | 40.0% | |
| GCTAGTTATAACACAGGTCT+GGG | + | chr8_1:12862528-12862547 | None:intergenic | 40.0% | |
| TGCTAGTTATAACACAGGTC+TGG | + | chr8_1:12862529-12862548 | None:intergenic | 40.0% | |
| AGCACTGCTAGTTATAACAC+AGG | + | chr8_1:12862534-12862553 | None:intergenic | 40.0% | |
| TGTTGTCATAGCAGCTATAG+CGG | - | chr8_1:12862612-12862631 | Msa1179440:intron | 40.0% | |
| TCAGCAATAACTGCAGATCA+TGG | + | chr8_1:12862708-12862727 | None:intergenic | 40.0% | |
| AACATGTGTCAGTTTGACAC+CGG | - | chr8_1:12862788-12862807 | Msa1179440:intron | 40.0% | |
| ATATTTCAGTGTTGTGTCGC+CGG | + | chr8_1:12862810-12862829 | None:intergenic | 40.0% | |
| ! | CTGGTTATGAAGCACTTACA+AGG | + | chr8_1:12862890-12862909 | None:intergenic | 40.0% |
| CTTGTAAGTGCTTCATAACC+AGG | - | chr8_1:12862888-12862907 | Msa1179440:intron | 40.0% | |
| ! | AAATTTGAAATCACGGGGGA+GGG | - | chr8_1:12863039-12863058 | Msa1179440:intron | 40.0% |
| AGACTGTTAAGACAAATGCG+CGG | - | chr8_1:12863260-12863279 | Msa1179440:intron | 40.0% | |
| CCGTGACTTATCTTCTTATG+AGG | + | chr8_1:12863536-12863555 | None:intergenic | 40.0% | |
| TTAGGGCCATCAAAACTGAA+GGG | + | chr8_1:12863790-12863809 | None:intergenic | 40.0% | |
| ATTAGGGCCATCAAAACTGA+AGG | + | chr8_1:12863791-12863810 | None:intergenic | 40.0% | |
| ATAGATACTGCTACCACTAC+TGG | + | chr8_1:12863972-12863991 | None:intergenic | 40.0% | |
| TAAAAGAGCAAATACGCCAG+GGG | + | chr8_1:12864040-12864059 | None:intergenic | 40.0% | |
| AACACTTCTGTGAGAACTCA+TGG | - | chr8_1:12864141-12864160 | Msa1179440:intron | 40.0% | |
| GACTTGCATTTCTTTGTCAC+CGG | - | chr8_1:12864260-12864279 | Msa1179440:intron | 40.0% | |
| GTCAACATTGCTCCTGTAAA+AGG | + | chr8_1:12864431-12864450 | None:intergenic | 40.0% | |
| GAGCAATGTTGACAAAAGTG+AGG | - | chr8_1:12864438-12864457 | Msa1179440:intron | 40.0% | |
| !!! | GTAACTTTTTCGGCGATAAG+AGG | + | chr8_1:12864623-12864642 | None:intergenic | 40.0% |
| AGCATCAGCATCCATGTTAT+GGG | + | chr8_1:12864648-12864667 | None:intergenic | 40.0% | |
| GATATTGCAGACACTAACTC+AGG | - | chr8_1:12864797-12864816 | Msa1179440:intron | 40.0% | |
| !! | AGTTCTTGTGAAAGTGTCTC+TGG | + | chr8_1:12864835-12864854 | None:intergenic | 40.0% |
| TTAACATGATGCACTCATGG+TGG | - | chr8_1:12864858-12864877 | Msa1179440:intron | 40.0% | |
| ! | GAAAATAACATCAGGGGTAC+AGG | + | chr8_1:12865102-12865121 | None:intergenic | 40.0% |
| TCTAGGTTGCCTTTAATCCA+AGG | + | chr8_1:12865165-12865184 | None:intergenic | 40.0% | |
| CATCCTTCTTCTCTCAGACA+TGG | - | chr8_1:12861854-12861873 | Msa1179440:three_prime_UTR | 45.0% | |
| ATGCCATGTCTGAGAGAAGA+AGG | + | chr8_1:12861860-12861879 | None:intergenic | 45.0% | |
| TAGCAGTGCTATAGCACTGT+TGG | - | chr8_1:12862544-12862563 | Msa1179440:CDS | 45.0% | |
| TAGCAGCTATAGCGGCATTA+TGG | - | chr8_1:12862620-12862639 | Msa1179440:intron | 45.0% | |
| CTTCTTATCGAAGACGTGTC+AGG | - | chr8_1:12862760-12862779 | Msa1179440:CDS | 45.0% | |
| GGTGTCAAACTGACACATGT+TGG | + | chr8_1:12862789-12862808 | None:intergenic | 45.0% | |
| ! | CAAATTTGAAATCACGGGGG+AGG | - | chr8_1:12863038-12863057 | Msa1179440:intron | 45.0% |
| ! | AATTTGAAATCACGGGGGAG+GGG | - | chr8_1:12863040-12863059 | Msa1179440:intron | 45.0% |
| GCCCTACAGATGTTTCAGTA+TGG | + | chr8_1:12863113-12863132 | None:intergenic | 45.0% | |
| TGTGTTGTGTGCTAGTGTAG+TGG | - | chr8_1:12863342-12863361 | Msa1179440:intron | 45.0% | |
| ! | CACTCAAATCAGTTGGTGTC+CGG | - | chr8_1:12863637-12863656 | Msa1179440:intron | 45.0% |
| !! | AACTGAAGGGGGTGTCAAAA+AGG | + | chr8_1:12863777-12863796 | None:intergenic | 45.0% |
| TAGGGCCATCAAAACTGAAG+GGG | + | chr8_1:12863789-12863808 | None:intergenic | 45.0% | |
| TTGCATTTCTTTGTCACCGG+TGG | - | chr8_1:12864263-12864282 | Msa1179440:intron | 45.0% | |
| ! | CTCATTTTCATCATCGCCAC+CGG | + | chr8_1:12864282-12864301 | None:intergenic | 45.0% |
| ! | ATGCAGTCACCCTTTTGCTT+AGG | - | chr8_1:12864336-12864355 | Msa1179440:intron | 45.0% |
| ! | AAGTGAGGCACTTGAGAACT+TGG | - | chr8_1:12864453-12864472 | Msa1179440:intron | 45.0% |
| ! | TTGACGAGATCGTTGATGGA+GGG | - | chr8_1:12864494-12864513 | Msa1179440:intron | 45.0% |
| ATCAGCATCCATGTTATGGG+AGG | + | chr8_1:12864645-12864664 | None:intergenic | 45.0% | |
| GAGCATCAGCATCCATGTTA+TGG | + | chr8_1:12864649-12864668 | None:intergenic | 45.0% | |
| TCCAGTCTTCTGCTAAGATC+TGG | - | chr8_1:12865007-12865026 | Msa1179440:intron | 45.0% | |
| TCCAGATCTTAGCAGAAGAC+TGG | + | chr8_1:12865011-12865030 | None:intergenic | 45.0% | |
| !!! | TTATTTTTTCAAAATATTAT+CGG | - | chr8_1:12862849-12862868 | Msa1179440:intron | 5.0% |
| GTCAGTGCGACAGAGATTCT+TGG | + | chr8_1:12862739-12862758 | None:intergenic | 50.0% | |
| ! | ATTTGAAATCACGGGGGAGG+GGG | - | chr8_1:12863041-12863060 | Msa1179440:intron | 50.0% |
| AAGACAAATGCGCGGACAGA+AGG | - | chr8_1:12863268-12863287 | Msa1179440:intron | 50.0% | |
| !! | GACACCCCCTTCAGTTTTGA+TGG | - | chr8_1:12863781-12863800 | Msa1179440:CDS | 50.0% |
| AGGGCCATCAAAACTGAAGG+GGG | + | chr8_1:12863788-12863807 | None:intergenic | 50.0% | |
| ATACCAGTAGAGGGCTGACT+TGG | + | chr8_1:12863892-12863911 | None:intergenic | 50.0% | |
| !! | TCACAAGGCATTGCCAGTAG+TGG | - | chr8_1:12863956-12863975 | Msa1179440:intron | 50.0% |
| TGCCTTGACGAGATCGTTGA+TGG | - | chr8_1:12864490-12864509 | Msa1179440:intron | 50.0% | |
| CTCCATCAACGATCTCGTCA+AGG | + | chr8_1:12864495-12864514 | None:intergenic | 50.0% | |
| ! | CTTGACGAGATCGTTGATGG+AGG | - | chr8_1:12864493-12864512 | Msa1179440:intron | 50.0% |
| TGATGCTCCCTTATCAGAGC+AGG | - | chr8_1:12864661-12864680 | Msa1179440:intron | 50.0% | |
| TGCAGACACTAACTCAGGCA+TGG | - | chr8_1:12864802-12864821 | Msa1179440:intron | 50.0% | |
| GCAGACACTAACTCAGGCAT+GGG | - | chr8_1:12864803-12864822 | Msa1179440:intron | 50.0% | |
| ! | TTTGAAATCACGGGGGAGGG+GGG | - | chr8_1:12863042-12863061 | Msa1179440:intron | 55.0% |
| TGTGCTAGTGTAGTGGCCAG+TGG | - | chr8_1:12863349-12863368 | Msa1179440:intron | 55.0% | |
| GATGCAGCAGATAGGGATGC+AGG | + | chr8_1:12863708-12863727 | None:intergenic | 55.0% | |
| CATCCAAGTCAGCCCTCTAC+TGG | - | chr8_1:12863886-12863905 | Msa1179440:intron | 55.0% | |
| ATGAACTTCCCAACGACCCC+TGG | - | chr8_1:12864021-12864040 | Msa1179440:intron | 55.0% | |
| CAAATACGCCAGGGGTCGTT+GGG | + | chr8_1:12864032-12864051 | None:intergenic | 55.0% | |
| TTGAAATCACGGGGGAGGGG+GGG | - | chr8_1:12863043-12863062 | Msa1179440:intron | 60.0% | |
| GCAAATACGCCAGGGGTCGT+TGG | + | chr8_1:12864033-12864052 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 12861770 | 12865234 | 12861770 | ID=Msa1179440;Name=Msa1179440 |
| chr8_1 | mRNA | 12861770 | 12865234 | 12861770 | ID=Msa1179440-mRNA-1;Parent=Msa1179440;Name=Msa1179440-mRNA-1;_AED=0.15;_eAED=0.15;_QI=103|1|1|1|1|1|6|368|180 |
| chr8_1 | exon | 12861770 | 12862197 | 12861770 | ID=Msa1179440-mRNA-1:exon:4623;Parent=Msa1179440-mRNA-1 |
| chr8_1 | exon | 12862322 | 12862406 | 12862322 | ID=Msa1179440-mRNA-1:exon:4622;Parent=Msa1179440-mRNA-1 |
| chr8_1 | exon | 12862489 | 12862566 | 12862489 | ID=Msa1179440-mRNA-1:exon:4621;Parent=Msa1179440-mRNA-1 |
| chr8_1 | exon | 12862647 | 12862794 | 12862647 | ID=Msa1179440-mRNA-1:exon:4620;Parent=Msa1179440-mRNA-1 |
| chr8_1 | exon | 12863715 | 12863874 | 12863715 | ID=Msa1179440-mRNA-1:exon:4619;Parent=Msa1179440-mRNA-1 |
| chr8_1 | exon | 12865120 | 12865234 | 12865120 | ID=Msa1179440-mRNA-1:exon:4618;Parent=Msa1179440-mRNA-1 |
| chr8_1 | five_prime_UTR | 12865132 | 12865234 | 12865132 | ID=Msa1179440-mRNA-1:five_prime_utr;Parent=Msa1179440-mRNA-1 |
| chr8_1 | CDS | 12865120 | 12865131 | 12865120 | ID=Msa1179440-mRNA-1:cds;Parent=Msa1179440-mRNA-1 |
| chr8_1 | CDS | 12863715 | 12863874 | 12863715 | ID=Msa1179440-mRNA-1:cds;Parent=Msa1179440-mRNA-1 |
| chr8_1 | CDS | 12862647 | 12862794 | 12862647 | ID=Msa1179440-mRNA-1:cds;Parent=Msa1179440-mRNA-1 |
| chr8_1 | CDS | 12862489 | 12862566 | 12862489 | ID=Msa1179440-mRNA-1:cds;Parent=Msa1179440-mRNA-1 |
| chr8_1 | CDS | 12862322 | 12862406 | 12862322 | ID=Msa1179440-mRNA-1:cds;Parent=Msa1179440-mRNA-1 |
| chr8_1 | CDS | 12862138 | 12862197 | 12862138 | ID=Msa1179440-mRNA-1:cds;Parent=Msa1179440-mRNA-1 |
| chr8_1 | three_prime_UTR | 12861770 | 12862137 | 12861770 | ID=Msa1179440-mRNA-1:three_prime_utr;Parent=Msa1179440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
