AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1182020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1182020 MtrunA17_Chr8g0339181 99.580 476 2 0 1 476 482 957 0.0 961
Msa1182020 MtrunA17_Chr5g0397621 63.866 476 169 1 1 476 419 891 0.0 606
Msa1182020 MtrunA17_Chr2g0297051 56.303 476 200 1 3 470 538 1013 3.56e-166 496
Msa1182020 MtrunA17_Chr4g0052521 54.678 481 205 2 3 470 501 981 1.35e-161 483
Msa1182020 MtrunA17_Chr8g0374331 66.667 240 80 0 237 476 1 240 2.68e-102 306
Msa1182020 MtrunA17_Chr8g0374391 68.868 212 66 0 265 476 22 233 4.58e-98 295
Msa1182020 MtrunA17_Chr4g0050431 40.000 485 253 10 2 466 442 908 5.01e-96 310
Msa1182020 MtrunA17_Chr3g0136331 37.832 489 273 9 3 470 407 885 2.30e-87 286
Msa1182020 MtrunA17_Chr8g0374321 70.238 168 50 0 1 168 512 679 1.44e-75 251
Msa1182020 MtrunA17_Chr2g0297871 32.231 484 280 15 3 475 104 550 4.87e-60 208
Msa1182020 MtrunA17_Chr4g0071991 33.562 438 256 11 3 428 261 675 1.09e-58 208
Msa1182020 MtrunA17_Chr8g0374371 65.789 114 39 0 1 114 76 189 4.85e-47 162
Msa1182020 MtrunA17_Chr4g0053441 28.931 477 268 14 1 433 316 765 6.88e-37 144
Msa1182020 MtrunA17_Chr5g0401211 34.659 176 86 3 280 426 650 825 6.66e-19 90.1
Msa1182020 MtrunA17_Chr4g0054021 25.430 523 288 15 3 426 229 748 1.75e-18 89.0
Msa1182020 MtrunA17_Chr8g0340261 28.030 264 145 7 222 441 131 393 5.22e-18 86.7
Msa1182020 MtrunA17_Chr3g0134771 33.152 184 94 4 272 426 644 827 8.15e-18 86.7
Msa1182020 MtrunA17_Chr1g0173111 26.236 526 283 16 3 426 300 822 1.50e-17 85.9
Msa1182020 MtrunA17_Chr7g0263361 31.818 176 88 3 280 423 628 803 2.74e-17 85.1
Msa1182020 MtrunA17_Chr2g0298031 25.187 401 234 11 99 441 281 673 1.03e-16 83.2
Msa1182020 MtrunA17_Chr1g0147981 25.888 394 210 12 99 423 293 673 1.70e-16 82.8
Msa1182020 MtrunA17_Chr8g0365021 25.954 393 211 12 99 423 346 726 2.58e-16 82.0
Msa1182020 MtrunA17_Chr8g0346461 31.138 167 81 2 280 412 621 787 3.04e-16 82.0
Msa1182020 MtrunA17_Chr8g0382071 33.908 174 86 3 284 428 654 827 3.51e-16 81.6
Msa1182020 MtrunA17_Chr6g0456201 29.703 202 103 4 278 441 641 841 4.31e-16 81.3
Msa1182020 MtrunA17_Chr3g0138931 25.547 411 219 13 99 441 276 667 7.54e-16 80.5
Msa1182020 MtrunA17_Chr7g0276551 25.598 418 223 16 99 445 42 442 9.21e-16 80.1
Msa1182020 MtrunA17_Chr1g0148031 24.627 402 234 10 99 441 276 667 2.92e-15 78.6
Msa1182020 MtrunA17_Chr6g0452721 25.553 407 238 13 99 445 278 679 3.06e-15 78.6
Msa1182020 MtrunA17_Chr2g0333721 24.936 393 215 12 99 423 274 654 4.42e-15 78.2
Msa1182020 MtrunA17_Chr4g0020551 31.884 207 101 5 248 426 566 760 4.84e-15 78.2
Msa1182020 MtrunA17_Chr7g0260401 29.730 185 96 2 278 428 672 856 6.62e-15 77.8
Msa1182020 MtrunA17_Chr4g0072131 24.250 400 238 10 99 441 279 670 1.34e-14 76.6
Msa1182020 MtrunA17_Chr4g0065481 24.427 393 219 12 98 423 276 657 1.50e-14 76.6
Msa1182020 MtrunA17_Chr2g0298871 30.337 178 91 2 284 428 702 879 1.54e-14 76.6
Msa1182020 MtrunA17_Chr3g0134951 29.143 175 93 2 280 423 585 759 2.10e-14 76.3
Msa1182020 MtrunA17_Chr4g0002331 26.566 399 192 13 131 428 494 892 3.61e-14 75.5
Msa1182020 MtrunA17_Chr2g0304941 25.628 398 216 13 94 423 272 657 7.82e-14 74.3
Msa1182020 MtrunA17_Chr4g0059961 24.570 407 242 13 99 445 280 681 1.72e-13 73.2
Msa1182020 MtrunA17_Chr8g0335291 28.571 189 105 3 286 445 497 684 2.49e-13 72.8
Msa1182020 MtrunA17_Chr8g0381711 27.155 232 126 6 232 433 482 700 1.48e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1182020 AT1G63440.1 64.059 473 162 2 1 470 512 979 0.0 601
Msa1182020 AT5G44790.1 55.094 481 202 2 3 470 511 990 3.66e-168 500
Msa1182020 AT5G21930.2 38.320 488 269 11 3 468 398 875 2.57e-90 294
Msa1182020 AT5G21930.1 38.320 488 269 11 3 468 398 875 2.57e-90 294
Msa1182020 AT4G33520.2 39.130 483 258 8 2 466 453 917 6.20e-88 289
Msa1182020 AT4G33520.3 38.923 483 259 8 2 466 453 917 7.43e-87 286
Msa1182020 AT5G21930.3 37.826 460 254 11 31 468 403 852 5.92e-81 268
Msa1182020 AT5G21930.4 36.603 418 233 11 2 397 397 804 1.12e-65 226
Msa1182020 AT4G30110.1 32.941 425 245 10 3 416 257 652 1.12e-58 208
Msa1182020 AT4G30110.2 32.941 425 245 10 3 416 257 652 1.12e-58 208
Msa1182020 AT2G19110.2 32.568 479 274 17 3 469 267 708 3.14e-56 202
Msa1182020 AT2G19110.3 32.568 479 274 17 3 469 267 708 3.14e-56 202
Msa1182020 AT2G19110.1 32.568 479 274 17 3 469 267 708 3.14e-56 202
Msa1182020 AT4G37270.1 30.905 453 260 13 1 419 312 745 2.30e-34 137
Msa1182020 AT4G30120.2 32.404 287 169 8 3 286 104 368 2.77e-31 124
Msa1182020 AT4G30120.1 32.404 287 169 8 3 286 263 527 1.52e-30 124
Msa1182020 AT1G07670.2 31.250 176 89 3 280 423 623 798 8.86e-18 87.0
Msa1182020 AT1G07670.1 31.250 176 89 3 280 423 623 798 8.86e-18 87.0
Msa1182020 AT1G07810.1 31.250 176 89 3 280 423 623 798 1.05e-17 87.0
Msa1182020 AT1G27770.3 33.523 176 88 3 280 426 590 765 2.00e-17 85.9
Msa1182020 AT1G27770.4 33.523 176 88 3 280 426 653 828 2.11e-17 85.9
Msa1182020 AT1G27770.1 33.523 176 88 3 280 426 653 828 2.11e-17 85.9
Msa1182020 AT4G37640.1 33.523 176 88 3 280 426 650 825 2.20e-17 85.9
Msa1182020 AT3G57330.1 32.948 173 88 2 284 428 646 818 5.12e-17 84.7
Msa1182020 AT2G41560.2 32.948 173 88 2 284 428 547 719 5.26e-17 84.7
Msa1182020 AT2G41560.3 32.948 173 88 2 284 428 547 719 5.26e-17 84.7
Msa1182020 AT2G41560.4 32.948 173 88 2 284 428 547 719 5.26e-17 84.7
Msa1182020 AT2G41560.1 32.948 173 88 2 284 428 649 821 5.37e-17 84.7
Msa1182020 AT3G57330.2 32.948 173 88 2 284 428 591 763 5.92e-17 84.3
Msa1182020 AT4G29900.1 30.472 233 109 8 254 441 655 879 8.18e-17 84.0
Msa1182020 AT4G29900.2 30.472 233 109 8 254 441 655 879 8.18e-17 84.0
Msa1182020 AT4G00900.2 29.032 186 98 2 272 423 609 794 2.80e-16 82.4
Msa1182020 AT4G00900.1 29.032 186 98 2 272 423 609 794 2.80e-16 82.4
Msa1182020 AT2G22950.1 32.386 176 90 3 280 426 651 826 4.10e-16 82.0
Msa1182020 AT5G57350.3 25.131 382 228 8 99 423 13 393 2.94e-15 79.0
Msa1182020 AT5G57350.4 25.131 382 228 8 99 423 275 655 3.53e-15 79.0
Msa1182020 AT5G57350.2 25.131 382 228 8 99 423 275 655 3.53e-15 79.0
Msa1182020 AT5G57350.1 25.131 382 228 8 99 423 275 655 3.53e-15 79.0
Msa1182020 AT5G62670.1 25.243 412 243 13 94 445 273 679 3.80e-15 79.0
Msa1182020 AT3G63380.1 30.049 203 102 4 278 441 640 841 4.25e-15 78.6
Msa1182020 AT3G60330.4 24.505 404 249 10 96 445 274 675 6.57e-15 78.2
Msa1182020 AT3G60330.3 24.505 404 249 10 96 445 274 675 6.57e-15 78.2
Msa1182020 AT3G60330.2 24.505 404 249 10 96 445 274 675 6.75e-15 78.2
Msa1182020 AT3G60330.1 24.505 404 249 10 96 445 274 675 6.75e-15 78.2
Msa1182020 AT2G07560.1 24.346 382 232 11 98 423 276 656 6.95e-15 78.2
Msa1182020 AT5G57110.1 30.000 220 110 7 242 428 649 857 2.32e-14 76.3
Msa1182020 AT5G57110.3 30.000 220 110 7 242 428 649 857 2.32e-14 76.3
Msa1182020 AT5G57110.2 30.000 220 110 7 242 428 649 857 2.32e-14 76.3
Msa1182020 AT3G22910.1 30.542 203 101 5 278 441 636 837 2.69e-14 76.3
Msa1182020 AT1G10130.1 28.994 169 89 2 286 423 590 758 3.45e-14 75.9
Msa1182020 AT1G17260.1 23.123 506 303 14 1 445 202 682 5.96e-14 75.1
Msa1182020 AT3G21180.1 30.337 178 91 3 284 428 697 874 8.24e-14 74.7
Msa1182020 AT3G42640.1 28.814 177 96 2 277 423 481 657 1.41e-13 73.9
Msa1182020 AT4G30190.1 24.607 382 230 9 99 423 274 654 1.93e-13 73.6
Msa1182020 AT2G24520.4 23.500 400 241 9 99 441 13 404 1.93e-13 73.2
Msa1182020 AT2G24520.2 23.500 400 241 9 99 441 319 710 2.22e-13 73.2
Msa1182020 AT2G24520.3 23.500 400 241 9 99 441 256 647 2.22e-13 73.2
Msa1182020 AT2G24520.1 23.500 400 241 9 99 441 256 647 2.22e-13 73.2
Msa1182020 AT2G18960.1 24.869 382 229 9 99 423 274 654 3.89e-13 72.4
Msa1182020 AT2G18960.3 24.869 382 229 9 99 423 210 590 3.94e-13 72.4
Msa1182020 AT2G18960.2 24.869 382 229 9 99 423 210 590 3.94e-13 72.4
Msa1182020 AT3G47950.1 27.228 202 110 5 277 445 486 683 5.16e-13 72.0
Msa1182020 AT3G47950.2 27.228 202 110 5 277 445 486 683 5.16e-13 72.0
Msa1182020 AT1G80660.2 22.922 397 228 11 94 423 145 530 7.89e-13 71.2
Msa1182020 AT1G80660.1 22.922 397 228 11 94 423 274 659 8.62e-13 71.2
Msa1182020 AT1G80660.3 22.922 397 228 11 94 423 274 659 9.31e-13 71.2
Msa1182020 AT1G80660.4 22.922 397 228 11 94 423 274 659 9.39e-13 71.2
Msa1182020 AT4G30190.2 43.023 86 49 0 338 423 602 687 1.51e-11 67.4

Find 112 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACGAGACATGGTCTTTC+TGG 0.183487 8_1:-16870461 None:intergenic
CGTTTAGCCTCTGGCTTTAC+TGG 0.188451 8_1:-16870001 None:intergenic
AAGAAGTTGCGCAAGAATTT+TGG 0.216776 8_1:+16869740 Msa1182020:CDS
ACTATTGTATTTGATAAAAC+TGG 0.217851 8_1:+16868788 Msa1182020:CDS
GGCAATCTGATTCCAGTAAA+AGG 0.229851 8_1:-16870553 None:intergenic
TCCATGTAGAGTCCATTTAA+TGG 0.244023 8_1:+16870662 Msa1182020:CDS
AATTGAATAATTACATCAAT+TGG 0.258804 8_1:-16870763 None:intergenic
GGCAAAATTAGGCCATTAAA+TGG 0.265650 8_1:-16870674 None:intergenic
TAGAACTAGAAGGCAAAATT+AGG 0.300913 8_1:-16870685 None:intergenic
CTGAACTACATTTGGGCTCT+TGG 0.323919 8_1:+16870487 Msa1182020:CDS
CCACAACAGCTTTGGCTATT+GGG 0.325607 8_1:-16869709 None:intergenic
TCAAATGCATCCATTCCTTT+TGG 0.332919 8_1:-16868183 None:intergenic
TGGCTGGGATGGTTCATTCC+TGG 0.335113 8_1:+16868129 Msa1182020:CDS
TCAATTAATGGAAAGATTGC+TGG 0.341065 8_1:+16869959 Msa1182020:CDS
GCCACAACAGCTTTGGCTAT+TGG 0.363601 8_1:-16869710 None:intergenic
GGTCTTTCTGGATAGATCTA+TGG 0.368784 8_1:-16870449 None:intergenic
TGATAAGGTGAAAGAATTGC+AGG 0.380954 8_1:+16870159 Msa1182020:CDS
GGCTGGGATGGTTCATTCCT+GGG 0.383085 8_1:+16868130 Msa1182020:CDS
GCAAGATGAACGACAATTGC+CGG 0.394280 8_1:-16870829 None:intergenic
ATGGCTTGCTGGTGCTTGCA+TGG 0.397065 8_1:+16870579 Msa1182020:CDS
ACTGCAGTCATGGTTGCTTC+AGG 0.398416 8_1:+16868276 Msa1182020:CDS
GTATCCGGCTGAACTACATT+TGG 0.403017 8_1:+16870479 Msa1182020:CDS
TGCATGTGCCACAACAGCTT+TGG 0.406312 8_1:-16869717 None:intergenic
AAAACTGGGACACTAACTAT+TGG 0.415683 8_1:+16868803 Msa1182020:CDS
TGGTTCATTCCTGGGAAAGC+TGG 0.423539 8_1:+16868138 Msa1182020:CDS
AGCACTGCACTAACTACTTC+TGG 0.426586 8_1:-16868830 None:intergenic
TACATCCAGGTCTTATGAAA+TGG 0.430168 8_1:-16870728 None:intergenic
CACTCACAACTTGGCTGGGA+TGG 0.430327 8_1:+16868118 Msa1182020:CDS
GCTGATGTTGGTATGGCAAT+TGG 0.433753 8_1:+16870352 Msa1182020:CDS
TATCCGGCTGAACTACATTT+GGG 0.434302 8_1:+16870480 Msa1182020:CDS
TGCAGCACTCACAACTTGGC+TGG 0.437353 8_1:+16868113 Msa1182020:CDS
CACATGGGAGCCGGGGTAAG+TGG 0.440733 8_1:+16869806 Msa1182020:CDS
AGATTGCCACCATGGCTTGC+TGG 0.452894 8_1:+16870568 Msa1182020:CDS
ATTGAATAATTACATCAATT+GGG 0.453476 8_1:-16870762 None:intergenic
GAAAGACCATGTCTCGTATC+CGG 0.457902 8_1:+16870464 Msa1182020:CDS
TTGAGGTACACATGGGAGCC+GGG 0.458392 8_1:+16869798 Msa1182020:CDS
AGAGATGTACTTCTCTGCTT+CGG 0.460610 8_1:-16869900 None:intergenic
CGAGTTGAACAATTTGAGAA+AGG 0.461956 8_1:-16866836 None:intergenic
TACAAAACACCAGCAGCAAT+TGG 0.467517 8_1:-16870529 None:intergenic
TTTGAGGTACACATGGGAGC+CGG 0.468893 8_1:+16869797 Msa1182020:CDS
ACAACATCCGGCACTTCCTC+AGG 0.471135 8_1:-16869770 None:intergenic
GTTGCTTGTCCATGTGCTCT+CGG 0.473679 8_1:+16868240 Msa1182020:CDS
AAATGAAGTTGGTATTGATC+AGG 0.474180 8_1:+16870105 Msa1182020:CDS
GTTGGTATGGCAATTGGTGC+TGG 0.475060 8_1:+16870358 Msa1182020:CDS
GCCATTAAATGGACTCTACA+TGG 0.482072 8_1:-16870663 None:intergenic
TCCAGTAGGAAAAGCTGATA+AGG 0.484688 8_1:+16870144 Msa1182020:CDS
CTTGCCTTTATCTTCAGAGT+TGG 0.486428 8_1:+16870847 Msa1182020:three_prime_UTR
GAATGGCTGCGTGTTGGTTA+AGG 0.487526 8_1:+16866788 Msa1182020:CDS
ACCTCAAAATCAACAACATC+CGG 0.491381 8_1:-16869782 None:intergenic
AACTTGCGGACGATATTTCA+AGG 0.492644 8_1:+16866895 Msa1182020:CDS
CCTAAACATTGGATACCAAA+AGG 0.495290 8_1:+16868168 Msa1182020:CDS
CTATTGTATTTGATAAAACT+GGG 0.500259 8_1:+16868789 Msa1182020:CDS
AGTTCTGATCAAAAGTAACT+TGG 0.503799 8_1:+16870411 Msa1182020:CDS
GGGTAAAATCCAGCTTTCCC+AGG 0.505971 8_1:-16868147 None:intergenic
GGTTGCTGCTGATGTTGGTA+TGG 0.508748 8_1:+16870345 Msa1182020:CDS
GATATAACACGTTTAGCCTC+TGG 0.509444 8_1:-16870010 None:intergenic
GTCATGGTTGCTTCAGGCAT+AGG 0.511018 8_1:+16868282 Msa1182020:CDS
TATATCATTTCTCCACTCCA+TGG 0.515893 8_1:+16870027 Msa1182020:CDS
CCCAATAGCCAAAGCTGTTG+TGG 0.520104 8_1:+16869709 Msa1182020:CDS
GAGTTGAACAATTTGAGAAA+GGG 0.520857 8_1:-16866835 None:intergenic
TGGTATTGATCAGGTCTTTG+CGG 0.521571 8_1:+16870114 Msa1182020:CDS
ATTGCTATTGCAAATGAAGT+TGG 0.521942 8_1:+16870094 Msa1182020:CDS
GCAATCTGATTCCAGTAAAA+GGG 0.524843 8_1:-16870552 None:intergenic
GATTGTCTAGTAGAACTAGA+AGG 0.525922 8_1:-16870695 None:intergenic
AGCTACACCAACTGCAGTCA+TGG 0.526782 8_1:+16868266 Msa1182020:CDS
GAGCCCAAATGTAGTTCAGC+CGG 0.527338 8_1:-16870483 None:intergenic
TTAGGAATGCCAATTGCTGC+TGG 0.529961 8_1:+16870520 Msa1182020:CDS
CTGGAATCAGATTGCCACCA+TGG 0.530456 8_1:+16870560 Msa1182020:CDS
GCATTGGTTGCTGCTGATGT+TGG 0.530924 8_1:+16870340 Msa1182020:CDS
AATAAACGACTCTCCGGCAT+TGG 0.534686 8_1:+16870324 Msa1182020:CDS
TTCTTGCCCTGAGGAAGTGC+CGG 0.538179 8_1:+16869763 Msa1182020:CDS
TAAATGGACTCTACATGGAA+AGG 0.552946 8_1:-16870658 None:intergenic
ATATCATTTCTCCACTCCAT+GGG 0.553331 8_1:+16870028 Msa1182020:CDS
ACATCAGCAGCAACCAATGC+CGG 0.553583 8_1:-16870337 None:intergenic
TTGGTTAAGGCTACACATGT+TGG 0.562636 8_1:+16866801 Msa1182020:CDS
ATGCAAGCACCAGCAAGCCA+TGG 0.563028 8_1:-16870577 None:intergenic
TGATGGAATAAACGACTCTC+CGG 0.563853 8_1:+16870318 Msa1182020:CDS
GCCGGGGTAAGTGGAAAAGT+TGG 0.569902 8_1:+16869815 Msa1182020:CDS
GCAGCACTCACAACTTGGCT+GGG 0.570761 8_1:+16868114 Msa1182020:CDS
GAGAGGAATGAGTGTGGCAA+TGG 0.573590 8_1:+16870291 Msa1182020:CDS
GGTGATCAAAAGTTACATCC+AGG 0.573695 8_1:-16870741 None:intergenic
TCTCAAGGAGTGCTCATCAA+AGG 0.573771 8_1:+16868309 Msa1182020:CDS
ACATTGGATACCAAAAGGAA+TGG 0.575639 8_1:+16868173 Msa1182020:CDS
ATCACAAGTGTCATTGTGAC+TGG 0.575781 8_1:+16870052 Msa1182020:CDS
CAATAGCAATCGCAGTAGCA+TGG 0.576960 8_1:-16870081 None:intergenic
AGTGTGGCAATGGTTGGTGA+TGG 0.581263 8_1:+16870301 Msa1182020:CDS
AGTGGAACGATCAATGAGAA+TGG 0.584544 8_1:+16866771 Msa1182020:CDS
ACTTGCGGACGATATTTCAA+GGG 0.585647 8_1:+16866896 Msa1182020:CDS
CAAGGAGTGCTCATCAAAGG+TGG 0.586487 8_1:+16868312 Msa1182020:CDS
GGAATGAGTGTGGCAATGGT+TGG 0.589419 8_1:+16870295 Msa1182020:CDS
AGGTGGAGATGCACTAGAGA+AGG 0.590622 8_1:+16868329 Msa1182020:CDS
CAAGCACCAGCAAGCCATGG+TGG 0.592300 8_1:-16870574 None:intergenic
GGCTGCGTCTTCTCTTAGTG+TGG 0.594279 8_1:+16870600 Msa1182020:CDS
TGAGGTACACATGGGAGCCG+GGG 0.603722 8_1:+16869799 Msa1182020:CDS
TAGTTGCAGCACTCACAACT+TGG 0.604555 8_1:+16868109 Msa1182020:CDS
TGCACTAGAGAAGGCACACA+AGG 0.606986 8_1:+16868338 Msa1182020:CDS
GTAGCTAGACCGAGAGCACA+TGG 0.614299 8_1:-16868249 None:intergenic
TATGTTGAACAGGTTATCAG+TGG 0.616450 8_1:+16866753 None:intergenic
CAACATCCGGCACTTCCTCA+GGG 0.623229 8_1:-16869769 None:intergenic
TCAGGCATAGGTGCTTCTCA+AGG 0.625037 8_1:+16868294 Msa1182020:CDS
ATGTGACATGGCAATTTCTG+TGG 0.627326 8_1:+16868880 Msa1182020:CDS
CACTTGTGATGCCCATGGAG+TGG 0.627675 8_1:-16870039 None:intergenic
TGAAACTGGATGCAGATGAG+AGG 0.633164 8_1:+16870274 Msa1182020:intron
CAATGAGAATGGCTGCGTGT+TGG 0.637765 8_1:+16866782 Msa1182020:CDS
GAAGCAACCATGACTGCAGT+TGG 0.642980 8_1:-16868273 None:intergenic
TATGGAGGTGTTATGTGACA+TGG 0.645016 8_1:+16868868 Msa1182020:CDS
GTTCAGCCGGATACGAGACA+TGG 0.651541 8_1:-16870470 None:intergenic
AATGACACTTGTGATGCCCA+TGG 0.667027 8_1:-16870044 None:intergenic
TGACATGGCAATTTCTGTGG+AGG 0.681728 8_1:+16868883 Msa1182020:CDS
ATCTGATCCAGTAAAGCCAG+AGG 0.695969 8_1:+16869994 Msa1182020:CDS
TTTGCGGAGACAGATCCAGT+AGG 0.710787 8_1:+16870130 Msa1182020:CDS
GCAGATGAGAGGAATGAGTG+TGG 0.726140 8_1:+16870285 Msa1182020:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTATAATTTTTTATGTAT+TGG + chr8_1:16867329-16867348 Msa1182020:intron 10.0%
!!! ATAAAATACAGTAAAATTTT+AGG - chr8_1:16868719-16868738 None:intergenic 10.0%
!!! GATTTTTTTTTTTAATTCCA+TGG - chr8_1:16867309-16867328 None:intergenic 15.0%
!! AAGTGTAAAATATGAAATAT+TGG - chr8_1:16867412-16867431 None:intergenic 15.0%
!! CCAAAAAAAAAAAAAAAAAG+AGG - chr8_1:16867558-16867577 None:intergenic 15.0%
!!! CCTCTTTTTTTTTTTTTTTT+TGG + chr8_1:16867555-16867574 Msa1182020:intron 15.0%
!! AATCAGTATATATAGTTAAA+GGG - chr8_1:16867710-16867729 None:intergenic 15.0%
!! TAATCAGTATATATAGTTAA+AGG - chr8_1:16867711-16867730 None:intergenic 15.0%
!!! TTAACTATATATACTGATTA+TGG + chr8_1:16867711-16867730 Msa1182020:intron 15.0%
!! TATGAAATGATTATATTCAA+TGG - chr8_1:16867855-16867874 None:intergenic 15.0%
!! TCAGATAAGATAAAAAAAAA+TGG - chr8_1:16868016-16868035 None:intergenic 15.0%
!!! AATTAGCTTAAATTTTATTG+AGG - chr8_1:16869657-16869676 None:intergenic 15.0%
!! ATTGAATAATTACATCAATT+GGG - chr8_1:16870765-16870784 None:intergenic 15.0%
!! AATTGAATAATTACATCAAT+TGG - chr8_1:16870766-16870785 None:intergenic 15.0%
!! TAAGAAAAAATACTCACAAT+TGG - chr8_1:16866930-16866949 None:intergenic 20.0%
!!! TTAACTATACTTTTCTGTTT+TGG + chr8_1:16866947-16866966 Msa1182020:intron 20.0%
!!! ATTTCAATACTTTTCTGTTT+TGG + chr8_1:16867044-16867063 Msa1182020:intron 20.0%
!! TAGTCAAATTCTGTTAATTA+TGG + chr8_1:16867237-16867256 Msa1182020:intron 20.0%
!!! TTTTTTTAATTCCATGGAAT+TGG - chr8_1:16867303-16867322 None:intergenic 20.0%
!! CAATGGTTTCTTATATTTAT+AGG - chr8_1:16867452-16867471 None:intergenic 20.0%
!! AAAAAAAAAGAGGTTACTAA+TGG - chr8_1:16867548-16867567 None:intergenic 20.0%
!! TTCTGATAAGCAAAAATATA+GGG - chr8_1:16868488-16868507 None:intergenic 20.0%
!! ATTCTGATAAGCAAAAATAT+AGG - chr8_1:16868489-16868508 None:intergenic 20.0%
!! ACTATTGTATTTGATAAAAC+TGG + chr8_1:16868788-16868807 Msa1182020:CDS 20.0%
!! CTATTGTATTTGATAAAACT+GGG + chr8_1:16868789-16868808 Msa1182020:CDS 20.0%
!!! AAATCATTCAATTGTAGTTT+TGG + chr8_1:16869010-16869029 Msa1182020:intron 20.0%
!!! AATCATTCAATTGTAGTTTT+GGG + chr8_1:16869011-16869030 Msa1182020:intron 20.0%
!! TATAAAAAAGCAAAGAACAA+AGG + chr8_1:16869127-16869146 Msa1182020:intron 20.0%
!! TTGTTGAAATGAAAAACAAA+AGG + chr8_1:16869577-16869596 Msa1182020:intron 20.0%
!!! GCTTTATTATCATTTACAAT+TGG - chr8_1:16869604-16869623 None:intergenic 20.0%
!! AATTATATGTACATATTTCC+AGG + chr8_1:16869673-16869692 Msa1182020:intron 20.0%
!!! TGTGTTTTAGTTTCAATTAA+TGG + chr8_1:16869947-16869966 Msa1182020:CDS 20.0%
!! GTTATAAAATGATATGAAAC+TGG + chr8_1:16870260-16870279 Msa1182020:intron 20.0%
!! TTGGATTTGAAATTAAGCAT+TGG + chr8_1:16866983-16867002 Msa1182020:intron 25.0%
!!! TTGAAATTAAGCATTGGAAT+TGG + chr8_1:16866989-16867008 Msa1182020:intron 25.0%
! ACAATATAATTGGAATTGCA+AGG - chr8_1:16867016-16867035 None:intergenic 25.0%
! ATGCAGGAAAACAATATAAT+TGG - chr8_1:16867026-16867045 None:intergenic 25.0%
!! TTGGATTTGAAATTAAGCAT+TGG + chr8_1:16866983-16867002 Msa1182020:intron 25.0%
!!! TTGAAATTAAGCATTGGAAT+TGG + chr8_1:16866989-16867008 Msa1182020:intron 25.0%
! ACAATATAATTGGAATTGCA+AGG - chr8_1:16867016-16867035 None:intergenic 25.0%
! ATGCAGGAAAACAATATAAT+TGG - chr8_1:16867026-16867045 None:intergenic 25.0%
! ATTAAATCTGTCCTTATTAC+AGG + chr8_1:16867177-16867196 Msa1182020:intron 25.0%
! ACTTGGAATTTCAATTCTTA+GGG - chr8_1:16867368-16867387 None:intergenic 25.0%
! ATATAAGAAACCATTGTTGT+TGG + chr8_1:16867456-16867475 Msa1182020:intron 25.0%
!! ACAGCATGAATTTTTATAAC+TGG + chr8_1:16867807-16867826 Msa1182020:intron 25.0%
!!! TATTTGAGTTGTAGAAATTC+TGG + chr8_1:16867873-16867892 Msa1182020:intron 25.0%
!!! CTCAAAAGTATTTCAAGAAA+TGG + chr8_1:16867896-16867915 Msa1182020:intron 25.0%
! ACAAAAATAAGACATGAAAC+AGG - chr8_1:16867951-16867970 None:intergenic 25.0%
! ATGCCAATATTTGAAAATGA+AGG + chr8_1:16867975-16867994 Msa1182020:intron 25.0%
! TGCCAATATTTGAAAATGAA+GGG + chr8_1:16867976-16867995 Msa1182020:intron 25.0%
!! ATCCCTTCATTTTCAAATAT+TGG - chr8_1:16867981-16868000 None:intergenic 25.0%
! ATGTAAATTGTGCTCTTATT+AGG + chr8_1:16868403-16868422 Msa1182020:intron 25.0%
! ATAAGCAAAAATATAGGGAA+AGG - chr8_1:16868483-16868502 None:intergenic 25.0%
! CATTCAATATCTAGTTATCA+TGG - chr8_1:16868525-16868544 None:intergenic 25.0%
! TGAATGTAAACGACATTTAA+AGG + chr8_1:16868539-16868558 Msa1182020:intron 25.0%
! TGCATTAAAATCATTGTCAA+TGG + chr8_1:16868589-16868608 Msa1182020:intron 25.0%
! GAATATCAAATCAAAATCCA+AGG - chr8_1:16869206-16869225 None:intergenic 25.0%
!! TTGATTTGATATTCGTTTAC+TGG + chr8_1:16869212-16869231 Msa1182020:intron 25.0%
! AACTACATTAACCATATCAT+AGG + chr8_1:16869368-16869387 Msa1182020:intron 25.0%
!!! TCAAGTTGAAAAGAAAAAAC+TGG - chr8_1:16870209-16870228 None:intergenic 25.0%
GAGTTGAACAATTTGAGAAA+GGG - chr8_1:16866838-16866857 None:intergenic 30.0%
!! ACAGAAAAGTATTGAAATGC+AGG - chr8_1:16867042-16867061 None:intergenic 30.0%
ATTTCAAAGAGAGAGGAAAT+AGG + chr8_1:16867141-16867160 Msa1182020:intron 30.0%
CACTTGGAATTTCAATTCTT+AGG - chr8_1:16867369-16867388 None:intergenic 30.0%
!!! AAACTTTTAGCTTTGACACT+TGG - chr8_1:16867385-16867404 None:intergenic 30.0%
! AATCCAACTACCATTGTTTT+TGG + chr8_1:16867482-16867501 Msa1182020:intron 30.0%
AAAAAAGAGGTTACTAATGG+AGG - chr8_1:16867545-16867564 None:intergenic 30.0%
! ACTTCATGATAAGCATGTTT+TGG + chr8_1:16867744-16867763 Msa1182020:intron 30.0%
! CTTCATGATAAGCATGTTTT+GGG + chr8_1:16867745-16867764 Msa1182020:intron 30.0%
! TATTTTGTGGTTACATCCTT+AGG + chr8_1:16868083-16868102 Msa1182020:intron 30.0%
! CTTTTGGTATCCAATGTTTA+GGG - chr8_1:16868170-16868189 None:intergenic 30.0%
! TATTAGGAGAGTACACTAAA+CGG + chr8_1:16868419-16868438 Msa1182020:intron 30.0%
AACAGCATAAATAACAAGAC+AGG - chr8_1:16868569-16868588 None:intergenic 30.0%
!!! GTGGAGGTATTTTTTTATGT+TGG + chr8_1:16868899-16868918 Msa1182020:intron 30.0%
TGTTGGATTCTGTACTTATT+TGG + chr8_1:16868916-16868935 Msa1182020:intron 30.0%
TCTGTACTTATTTGGATATC+TGG + chr8_1:16868924-16868943 Msa1182020:intron 30.0%
! TTCTTCAATAACTTTTGCAC+AGG - chr8_1:16868983-16869002 None:intergenic 30.0%
!!! AAAGCCAAGAATTTTTTGCT+TGG + chr8_1:16869060-16869079 Msa1182020:intron 30.0%
!!! AAGCCAAGAATTTTTTGCTT+GGG + chr8_1:16869061-16869080 Msa1182020:intron 30.0%
TAACCCAAGCAAAAAATTCT+TGG - chr8_1:16869067-16869086 None:intergenic 30.0%
! TTTTGCTTGGGTTAAATTTC+AGG + chr8_1:16869073-16869092 Msa1182020:intron 30.0%
! AGGTGCTTTTATTGTGAAAT+AGG + chr8_1:16869093-16869112 Msa1182020:intron 30.0%
GATACTTTGTACCTATGATA+TGG - chr8_1:16869382-16869401 None:intergenic 30.0%
TCAATTAATGGAAAGATTGC+TGG + chr8_1:16869959-16869978 Msa1182020:CDS 30.0%
! ATTGCTATTGCAAATGAAGT+TGG + chr8_1:16870094-16870113 Msa1182020:CDS 30.0%
!! AAATGAAGTTGGTATTGATC+AGG + chr8_1:16870105-16870124 Msa1182020:CDS 30.0%
CTAATGCAATTGACACATAT+TGG + chr8_1:16870238-16870257 Msa1182020:intron 30.0%
! AGTTCTGATCAAAAGTAACT+TGG + chr8_1:16870411-16870430 Msa1182020:CDS 30.0%
TAGAACTAGAAGGCAAAATT+AGG - chr8_1:16870688-16870707 None:intergenic 30.0%
!! TTTTCCAACTCTGAAGATAA+AGG - chr8_1:16870854-16870873 None:intergenic 30.0%
! CGAGTTGAACAATTTGAGAA+AGG - chr8_1:16866839-16866858 None:intergenic 35.0%
! AAGTTTTTGAACTGGTGCTT+TGG - chr8_1:16866880-16866899 None:intergenic 35.0%
!!! TTTCTGTTTTGGTTGATGCT+TGG + chr8_1:16866958-16866977 Msa1182020:intron 35.0%
!! TTTTGGTTGATGTGTGAAGT+TGG + chr8_1:16867061-16867080 Msa1182020:intron 35.0%
TGTCCTTATTACAGGAAACT+GGG + chr8_1:16867185-16867204 Msa1182020:intron 35.0%
GGAATTGGAATAGCAATTCT+GGG - chr8_1:16867288-16867307 None:intergenic 35.0%
TGGAATTGGAATAGCAATTC+TGG - chr8_1:16867289-16867308 None:intergenic 35.0%
! GAATTGCTATTCCAATTCCA+TGG + chr8_1:16867289-16867308 Msa1182020:intron 35.0%
! TTGGATTTTGCCAACAACAA+TGG - chr8_1:16867469-16867488 None:intergenic 35.0%
AGGTAGTGTTTAGAGACAAT+CGG - chr8_1:16867525-16867544 None:intergenic 35.0%
!! TACTAATAGAGTGTTGGCTT+GGG - chr8_1:16867661-16867680 None:intergenic 35.0%
!! TTACTAATAGAGTGTTGGCT+TGG - chr8_1:16867662-16867681 None:intergenic 35.0%
AGAGGTTACTAATAGAGTGT+TGG - chr8_1:16867667-16867686 None:intergenic 35.0%
TCAACAGTGACACTAATAAG+AGG - chr8_1:16867685-16867704 None:intergenic 35.0%
!! ATGATAAGCATGTTTTGGGT+GGG + chr8_1:16867749-16867768 Msa1182020:intron 35.0%
TGTAACAATCATTGCAATGC+TGG - chr8_1:16868041-16868060 None:intergenic 35.0%
ACAAAATAAGCAGCTTCACA+GGG - chr8_1:16868071-16868090 None:intergenic 35.0%
! CTGGATTTTACCCTAAACAT+TGG + chr8_1:16868157-16868176 Msa1182020:CDS 35.0%
! CCTTTTGGTATCCAATGTTT+AGG - chr8_1:16868171-16868190 None:intergenic 35.0%
CCTAAACATTGGATACCAAA+AGG + chr8_1:16868168-16868187 Msa1182020:CDS 35.0%
ACATTGGATACCAAAAGGAA+TGG + chr8_1:16868173-16868192 Msa1182020:CDS 35.0%
! TCAAATGCATCCATTCCTTT+TGG - chr8_1:16868186-16868205 None:intergenic 35.0%
ACATGACATAGTAGATACAG+TGG - chr8_1:16868654-16868673 None:intergenic 35.0%
AAAACTGGGACACTAACTAT+TGG + chr8_1:16868803-16868822 Msa1182020:CDS 35.0%
!! GCTGCTTTCTGAATTTTCTA+TGG + chr8_1:16868850-16868869 Msa1182020:CDS 35.0%
! GCTTTCTGAATTTTCTATGG+AGG + chr8_1:16868853-16868872 Msa1182020:CDS 35.0%
!!! CATTCAATTGTAGTTTTGGG+CGG + chr8_1:16869014-16869033 Msa1182020:intron 35.0%
AGGTACTTTGTCTTTCGTTT+AGG + chr8_1:16869147-16869166 Msa1182020:intron 35.0%
TCTAAATAGTGTCTAGTCCT+TGG + chr8_1:16869186-16869205 Msa1182020:intron 35.0%
ATTCGTTTACTGGAGTGAAA+AGG + chr8_1:16869222-16869241 Msa1182020:intron 35.0%
AGACTGCAATAGATGTGAAA+TGG + chr8_1:16869313-16869332 Msa1182020:intron 35.0%
AATGTAGTTCTCTCTACATC+AGG - chr8_1:16869357-16869376 None:intergenic 35.0%
TTGTCGCTGAAAAAAATGTG+GGG - chr8_1:16869473-16869492 None:intergenic 35.0%
CTTGTCGCTGAAAAAAATGT+GGG - chr8_1:16869474-16869493 None:intergenic 35.0%
TCTACCAATATTACGTTGGT+CGG - chr8_1:16869529-16869548 None:intergenic 35.0%
GAGCTGTATATTATAGAACC+AGG + chr8_1:16869547-16869566 Msa1182020:intron 35.0%
CATTTCAACAATAAAGAGCC+TGG - chr8_1:16869568-16869587 None:intergenic 35.0%
! AAGAAGTTGCGCAAGAATTT+TGG + chr8_1:16869740-16869759 Msa1182020:CDS 35.0%
ACCTCAAAATCAACAACATC+CGG - chr8_1:16869785-16869804 None:intergenic 35.0%
!!! TGTTGATTTTGAGGTACACA+TGG + chr8_1:16869790-16869809 Msa1182020:CDS 35.0%
!!! GTTGATTTTGAGGTACACAT+GGG + chr8_1:16869791-16869810 Msa1182020:CDS 35.0%
!! GGTGATAGAACAGTTTTAGT+TGG + chr8_1:16869836-16869855 Msa1182020:CDS 35.0%
TATATCATTTCTCCACTCCA+TGG + chr8_1:16870027-16870046 Msa1182020:CDS 35.0%
ATATCATTTCTCCACTCCAT+GGG + chr8_1:16870028-16870047 Msa1182020:CDS 35.0%
TGATAAGGTGAAAGAATTGC+AGG + chr8_1:16870159-16870178 Msa1182020:CDS 35.0%
! GCTCTTGGTTACAACATTTT+AGG + chr8_1:16870502-16870521 Msa1182020:CDS 35.0%
GCAATCTGATTCCAGTAAAA+GGG - chr8_1:16870555-16870574 None:intergenic 35.0%
! TAAATGGACTCTACATGGAA+AGG - chr8_1:16870661-16870680 None:intergenic 35.0%
TCCATGTAGAGTCCATTTAA+TGG + chr8_1:16870662-16870681 Msa1182020:CDS 35.0%
GGCAAAATTAGGCCATTAAA+TGG - chr8_1:16870677-16870696 None:intergenic 35.0%
GATTGTCTAGTAGAACTAGA+AGG - chr8_1:16870698-16870717 None:intergenic 35.0%
CTTATGAAATGGCAAAAACG+TGG - chr8_1:16870720-16870739 None:intergenic 35.0%
!! TTTTGCCATTTCATAAGACC+TGG + chr8_1:16870723-16870742 Msa1182020:three_prime_UTR 35.0%
! TACATCCAGGTCTTATGAAA+TGG - chr8_1:16870731-16870750 None:intergenic 35.0%
!! CACCTGTTGTTCTATTTTTC+CGG + chr8_1:16870810-16870829 Msa1182020:three_prime_UTR 35.0%
AGTGGAACGATCAATGAGAA+TGG + chr8_1:16866771-16866790 Msa1182020:CDS 40.0%
TTGGTTAAGGCTACACATGT+TGG + chr8_1:16866801-16866820 Msa1182020:CDS 40.0%
AGCACCAGTTCAAAAACTTG+CGG + chr8_1:16866881-16866900 Msa1182020:CDS 40.0%
AACTTGCGGACGATATTTCA+AGG + chr8_1:16866895-16866914 Msa1182020:CDS 40.0%
ACTTGCGGACGATATTTCAA+GGG + chr8_1:16866896-16866915 Msa1182020:CDS 40.0%
!! TTTTGGTTGATGCTTGGAGT+TGG + chr8_1:16866964-16866983 Msa1182020:intron 40.0%
TTCCTGCATTTCAAAGAGAG+AGG + chr8_1:16867134-16867153 Msa1182020:intron 40.0%
!! TTCCTCTCTCTTTGAAATGC+AGG - chr8_1:16867139-16867158 None:intergenic 40.0%
AAAGAGAGAGGAAATAGGTC+TGG + chr8_1:16867146-16867165 Msa1182020:intron 40.0%
CTGTCCTTATTACAGGAAAC+TGG + chr8_1:16867184-16867203 Msa1182020:intron 40.0%
ACACCCAGTTTCCTGTAATA+AGG - chr8_1:16867191-16867210 None:intergenic 40.0%
GTGCCAAAAACAATGGTAGT+TGG - chr8_1:16867488-16867507 None:intergenic 40.0%
ATTGCAGGTGCCAAAAACAA+TGG - chr8_1:16867495-16867514 None:intergenic 40.0%
TAGTGTTTAGAGACAATCGG+CGG - chr8_1:16867522-16867541 None:intergenic 40.0%
ATAAACTAGCCCACCCAAAT+TGG + chr8_1:16867585-16867604 Msa1182020:intron 40.0%
!! CATGATAAGCATGTTTTGGG+TGG + chr8_1:16867748-16867767 Msa1182020:intron 40.0%
! TGGGTGGGAATTTTCTTAAC+TGG + chr8_1:16867764-16867783 Msa1182020:intron 40.0%
! GGGTGGGAATTTTCTTAACT+GGG + chr8_1:16867765-16867784 Msa1182020:intron 40.0%
CACAAAATAAGCAGCTTCAC+AGG - chr8_1:16868072-16868091 None:intergenic 40.0%
!!! CTGTGAAGCTGCTTATTTTG+TGG + chr8_1:16868070-16868089 Msa1182020:intron 40.0%
TTTGTGGTTACATCCTTAGG+TGG + chr8_1:16868086-16868105 Msa1182020:intron 40.0%
AACTCAAGATATGAAGCAGC+AGG - chr8_1:16868381-16868400 None:intergenic 40.0%
ATTGTTCTCGACTTCAATGC+AGG + chr8_1:16868760-16868779 Msa1182020:intron 40.0%
!! TATGGAGGTGTTATGTGACA+TGG + chr8_1:16868868-16868887 Msa1182020:CDS 40.0%
ATGTGACATGGCAATTTCTG+TGG + chr8_1:16868880-16868899 Msa1182020:CDS 40.0%
TGTCTTTCGTTTAGGAGATC+TGG + chr8_1:16869155-16869174 Msa1182020:intron 40.0%
GTCTTTCGTTTAGGAGATCT+GGG + chr8_1:16869156-16869175 Msa1182020:intron 40.0%
TCTTTCGTTTAGGAGATCTG+GGG + chr8_1:16869157-16869176 Msa1182020:intron 40.0%
TTTACTGGAGTGAAAAGGAG+AGG + chr8_1:16869227-16869246 Msa1182020:intron 40.0%
ATCAGTGTCTTGCAGATGTA+TGG + chr8_1:16869288-16869307 Msa1182020:intron 40.0%
CTACATCAGGATTCAGGAAA+GGG - chr8_1:16869344-16869363 None:intergenic 40.0%
TCTACATCAGGATTCAGGAA+AGG - chr8_1:16869345-16869364 None:intergenic 40.0%
TTCTCTCTACATCAGGATTC+AGG - chr8_1:16869350-16869369 None:intergenic 40.0%
! CATAGGTACAAAGTATCCAC+TGG + chr8_1:16869385-16869404 Msa1182020:intron 40.0%
CACTGATGACTAATCTTCGT+CGG + chr8_1:16869411-16869430 Msa1182020:intron 40.0%
CCTTGTCGCTGAAAAAAATG+TGG - chr8_1:16869475-16869494 None:intergenic 40.0%
!!! CCACATTTTTTTCAGCGACA+AGG + chr8_1:16869472-16869491 Msa1182020:intron 40.0%
CAGCTCTACCAATATTACGT+TGG - chr8_1:16869533-16869552 None:intergenic 40.0%
AGAGATGTACTTCTCTGCTT+CGG - chr8_1:16869903-16869922 None:intergenic 40.0%
GATATAACACGTTTAGCCTC+TGG - chr8_1:16870013-16870032 None:intergenic 40.0%
! ATCACAAGTGTCATTGTGAC+TGG + chr8_1:16870052-16870071 Msa1182020:CDS 40.0%
!! TGGTATTGATCAGGTCTTTG+CGG + chr8_1:16870114-16870133 Msa1182020:CDS 40.0%
TCCAGTAGGAAAAGCTGATA+AGG + chr8_1:16870144-16870163 Msa1182020:CDS 40.0%
! ACCTTATCAGCTTTTCCTAC+TGG - chr8_1:16870148-16870167 None:intergenic 40.0%
AGGTGAAAGAATTGCAGGTA+TGG + chr8_1:16870164-16870183 Msa1182020:intron 40.0%
TGATGGAATAAACGACTCTC+CGG + chr8_1:16870318-16870337 Msa1182020:CDS 40.0%
GGTCTTTCTGGATAGATCTA+TGG - chr8_1:16870452-16870471 None:intergenic 40.0%
TATCCGGCTGAACTACATTT+GGG + chr8_1:16870480-16870499 Msa1182020:CDS 40.0%
TACAAAACACCAGCAGCAAT+TGG - chr8_1:16870532-16870551 None:intergenic 40.0%
! GGTGTTTTGTACCCTTTTAC+TGG + chr8_1:16870541-16870560 Msa1182020:CDS 40.0%
GGCAATCTGATTCCAGTAAA+AGG - chr8_1:16870556-16870575 None:intergenic 40.0%
! GCCATTAAATGGACTCTACA+TGG - chr8_1:16870666-16870685 None:intergenic 40.0%
GGTGATCAAAAGTTACATCC+AGG - chr8_1:16870744-16870763 None:intergenic 40.0%
TGCCGGAAAAATAGAACAAC+AGG - chr8_1:16870815-16870834 None:intergenic 40.0%
CTTGCCTTTATCTTCAGAGT+TGG + chr8_1:16870847-16870866 Msa1182020:three_prime_UTR 40.0%
! TCGTCCGCAAGTTTTTGAAC+TGG - chr8_1:16866888-16866907 None:intergenic 45.0%
GAATTGAACCTCAGACCTTG+AGG + chr8_1:16867617-16867636 Msa1182020:intron 45.0%
AACTGGGTGTTCACGAATTC+TGG + chr8_1:16867781-16867800 Msa1182020:intron 45.0%
TAGTTGCAGCACTCACAACT+TGG + chr8_1:16868109-16868128 Msa1182020:CDS 45.0%
!! TCTCAAGGAGTGCTCATCAA+AGG + chr8_1:16868309-16868328 Msa1182020:CDS 45.0%
AGCACTGCACTAACTACTTC+TGG - chr8_1:16868833-16868852 None:intergenic 45.0%
TGACATGGCAATTTCTGTGG+AGG + chr8_1:16868883-16868902 Msa1182020:CDS 45.0%
CTTTCGTTTAGGAGATCTGG+GGG + chr8_1:16869158-16869177 Msa1182020:intron 45.0%
GAGTGAAAAGGAGAGGCTAA+TGG + chr8_1:16869234-16869253 Msa1182020:intron 45.0%
AATGGTCGTAGTTGCTGTCA+TGG + chr8_1:16869252-16869271 Msa1182020:intron 45.0%
TTAGTCATCAGTGAAGCCAG+TGG - chr8_1:16869404-16869423 None:intergenic 45.0%
CTTGTTGAAGGTTACCCACT+AGG - chr8_1:16869441-16869460 None:intergenic 45.0%
! CTAGTGGGTAACCTTCAACA+AGG + chr8_1:16869439-16869458 Msa1182020:intron 45.0%
CGCTGAAAAAAATGTGGGGA+GGG - chr8_1:16869469-16869488 None:intergenic 45.0%
TCGCTGAAAAAAATGTGGGG+AGG - chr8_1:16869470-16869489 None:intergenic 45.0%
TCGAACCAAGACCTTGCTTA+AGG + chr8_1:16869496-16869515 Msa1182020:intron 45.0%
CGAACCAAGACCTTGCTTAA+GGG + chr8_1:16869497-16869516 Msa1182020:intron 45.0%
AGATCCCTTAAGCAAGGTCT+TGG - chr8_1:16869504-16869523 None:intergenic 45.0%
CTGACCGACCAACGTAATAT+TGG + chr8_1:16869522-16869541 Msa1182020:intron 45.0%
TTGGGTGTTCACTATTTGCC+TGG - chr8_1:16869694-16869713 None:intergenic 45.0%
! CCACAACAGCTTTGGCTATT+GGG - chr8_1:16869712-16869731 None:intergenic 45.0%
!!! GAATTTTGGTTCTTGCCCTG+AGG + chr8_1:16869754-16869773 Msa1182020:CDS 45.0%
!!! GCCGGATGTTGTTGATTTTG+AGG + chr8_1:16869781-16869800 Msa1182020:CDS 45.0%
! ACCAACTTTTCCACTTACCC+CGG - chr8_1:16869819-16869838 None:intergenic 45.0%
ATCTGATCCAGTAAAGCCAG+AGG + chr8_1:16869994-16870013 Msa1182020:CDS 45.0%
AATGACACTTGTGATGCCCA+TGG - chr8_1:16870047-16870066 None:intergenic 45.0%
CAATAGCAATCGCAGTAGCA+TGG - chr8_1:16870084-16870103 None:intergenic 45.0%
TGAAACTGGATGCAGATGAG+AGG + chr8_1:16870274-16870293 Msa1182020:intron 45.0%
AATAAACGACTCTCCGGCAT+TGG + chr8_1:16870324-16870343 Msa1182020:CDS 45.0%
GCTGATGTTGGTATGGCAAT+TGG + chr8_1:16870352-16870371 Msa1182020:CDS 45.0%
GATACGAGACATGGTCTTTC+TGG - chr8_1:16870464-16870483 None:intergenic 45.0%
GAAAGACCATGTCTCGTATC+CGG + chr8_1:16870464-16870483 Msa1182020:CDS 45.0%
GTATCCGGCTGAACTACATT+TGG + chr8_1:16870479-16870498 Msa1182020:CDS 45.0%
CTGAACTACATTTGGGCTCT+TGG + chr8_1:16870487-16870506 Msa1182020:CDS 45.0%
TTAGGAATGCCAATTGCTGC+TGG + chr8_1:16870520-16870539 Msa1182020:CDS 45.0%
GCAAGATGAACGACAATTGC+CGG - chr8_1:16870832-16870851 None:intergenic 45.0%
CAATGAGAATGGCTGCGTGT+TGG + chr8_1:16866782-16866801 Msa1182020:CDS 50.0%
!! GAATGGCTGCGTGTTGGTTA+AGG + chr8_1:16866788-16866807 Msa1182020:CDS 50.0%
TCTGGGTTACACGTGTTGTG+TGG - chr8_1:16867271-16867290 None:intergenic 50.0%
! ATTCTCCCCGGTGCCAATTT+GGG - chr8_1:16867601-16867620 None:intergenic 50.0%
! AATTCTCCCCGGTGCCAATT+TGG - chr8_1:16867602-16867621 None:intergenic 50.0%
! GTCTGAGGTTCAATTCTCCC+CGG - chr8_1:16867613-16867632 None:intergenic 50.0%
TTGAACCTCAGACCTTGAGG+AGG + chr8_1:16867620-16867639 Msa1182020:intron 50.0%
!! AGAGTGTTGGCTTGGGAACT+TGG - chr8_1:16867654-16867673 None:intergenic 50.0%
AGTGCTGCAACTACCACCTA+AGG - chr8_1:16868102-16868121 None:intergenic 50.0%
TGGTTCATTCCTGGGAAAGC+TGG + chr8_1:16868138-16868157 Msa1182020:CDS 50.0%
GGGTAAAATCCAGCTTTCCC+AGG - chr8_1:16868150-16868169 None:intergenic 50.0%
GTTGCTTGTCCATGTGCTCT+CGG + chr8_1:16868240-16868259 Msa1182020:CDS 50.0%
AGCTACACCAACTGCAGTCA+TGG + chr8_1:16868266-16868285 Msa1182020:CDS 50.0%
GAAGCAACCATGACTGCAGT+TGG - chr8_1:16868276-16868295 None:intergenic 50.0%
ACTGCAGTCATGGTTGCTTC+AGG + chr8_1:16868276-16868295 Msa1182020:CDS 50.0%
GTCATGGTTGCTTCAGGCAT+AGG + chr8_1:16868282-16868301 Msa1182020:CDS 50.0%
TCAGGCATAGGTGCTTCTCA+AGG + chr8_1:16868294-16868313 Msa1182020:CDS 50.0%
!! CAAGGAGTGCTCATCAAAGG+TGG + chr8_1:16868312-16868331 Msa1182020:CDS 50.0%
AGGTGGAGATGCACTAGAGA+AGG + chr8_1:16868329-16868348 Msa1182020:CDS 50.0%
! TGCACTAGAGAAGGCACACA+AGG + chr8_1:16868338-16868357 Msa1182020:CDS 50.0%
ATCTTCGTCGGAGAACCTAG+TGG + chr8_1:16869423-16869442 Msa1182020:intron 50.0%
TCTTCGTCGGAGAACCTAGT+GGG + chr8_1:16869424-16869443 Msa1182020:intron 50.0%
TCGGTCAGATCCCTTAAGCA+AGG - chr8_1:16869510-16869529 None:intergenic 50.0%
CCCAATAGCCAAAGCTGTTG+TGG + chr8_1:16869709-16869728 Msa1182020:CDS 50.0%
! GCCACAACAGCTTTGGCTAT+TGG - chr8_1:16869713-16869732 None:intergenic 50.0%
TGCATGTGCCACAACAGCTT+TGG - chr8_1:16869720-16869739 None:intergenic 50.0%
! TTTGAGGTACACATGGGAGC+CGG + chr8_1:16869797-16869816 Msa1182020:CDS 50.0%
!! CGTTTAGCCTCTGGCTTTAC+TGG - chr8_1:16870004-16870023 None:intergenic 50.0%
TTTGCGGAGACAGATCCAGT+AGG + chr8_1:16870130-16870149 Msa1182020:CDS 50.0%
GCAGATGAGAGGAATGAGTG+TGG + chr8_1:16870285-16870304 Msa1182020:intron 50.0%
GAGAGGAATGAGTGTGGCAA+TGG + chr8_1:16870291-16870310 Msa1182020:CDS 50.0%
GGAATGAGTGTGGCAATGGT+TGG + chr8_1:16870295-16870314 Msa1182020:CDS 50.0%
!! AGTGTGGCAATGGTTGGTGA+TGG + chr8_1:16870301-16870320 Msa1182020:CDS 50.0%
ACATCAGCAGCAACCAATGC+CGG - chr8_1:16870340-16870359 None:intergenic 50.0%
!! GCATTGGTTGCTGCTGATGT+TGG + chr8_1:16870340-16870359 Msa1182020:CDS 50.0%
GGTTGCTGCTGATGTTGGTA+TGG + chr8_1:16870345-16870364 Msa1182020:CDS 50.0%
GTTGGTATGGCAATTGGTGC+TGG + chr8_1:16870358-16870377 Msa1182020:CDS 50.0%
GAGCCCAAATGTAGTTCAGC+CGG - chr8_1:16870486-16870505 None:intergenic 50.0%
CTGGAATCAGATTGCCACCA+TGG + chr8_1:16870560-16870579 Msa1182020:CDS 50.0%
ACAATCGGCGGAGTCATTGC+AGG - chr8_1:16867510-16867529 None:intergenic 55.0%
TAGCCCACCCAAATTGGCAC+CGG + chr8_1:16867591-16867610 Msa1182020:intron 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG - chr8_1:16867635-16867654 None:intergenic 55.0%
TGCAGCACTCACAACTTGGC+TGG + chr8_1:16868113-16868132 Msa1182020:CDS 55.0%
GCAGCACTCACAACTTGGCT+GGG + chr8_1:16868114-16868133 Msa1182020:CDS 55.0%
CACTCACAACTTGGCTGGGA+TGG + chr8_1:16868118-16868137 Msa1182020:CDS 55.0%
TGGCTGGGATGGTTCATTCC+TGG + chr8_1:16868129-16868148 Msa1182020:CDS 55.0%
GGCTGGGATGGTTCATTCCT+GGG + chr8_1:16868130-16868149 Msa1182020:CDS 55.0%
! GTAGCTAGACCGAGAGCACA+TGG - chr8_1:16868252-16868271 None:intergenic 55.0%
GGGAGGGAAGACCTTGTTGA+AGG - chr8_1:16869453-16869472 None:intergenic 55.0%
! TTCTTGCCCTGAGGAAGTGC+CGG + chr8_1:16869763-16869782 Msa1182020:CDS 55.0%
CAACATCCGGCACTTCCTCA+GGG - chr8_1:16869772-16869791 None:intergenic 55.0%
ACAACATCCGGCACTTCCTC+AGG - chr8_1:16869773-16869792 None:intergenic 55.0%
TTGAGGTACACATGGGAGCC+GGG + chr8_1:16869798-16869817 Msa1182020:CDS 55.0%
GCCGGGGTAAGTGGAAAAGT+TGG + chr8_1:16869815-16869834 Msa1182020:CDS 55.0%
CACTTGTGATGCCCATGGAG+TGG - chr8_1:16870042-16870061 None:intergenic 55.0%
GTTCAGCCGGATACGAGACA+TGG - chr8_1:16870473-16870492 None:intergenic 55.0%
! AGATTGCCACCATGGCTTGC+TGG + chr8_1:16870568-16870587 Msa1182020:CDS 55.0%
ATGCAAGCACCAGCAAGCCA+TGG - chr8_1:16870580-16870599 None:intergenic 55.0%
!! ATGGCTTGCTGGTGCTTGCA+TGG + chr8_1:16870579-16870598 Msa1182020:CDS 55.0%
GGCTGCGTCTTCTCTTAGTG+TGG + chr8_1:16870600-16870619 Msa1182020:CDS 55.0%
AGCCCACCCAAATTGGCACC+GGG + chr8_1:16867592-16867611 Msa1182020:intron 60.0%
! TCCCCGGTGCCAATTTGGGT+GGG - chr8_1:16867597-16867616 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTG+AGG - chr8_1:16867628-16867647 None:intergenic 60.0%
TGAGGTACACATGGGAGCCG+GGG + chr8_1:16869799-16869818 Msa1182020:CDS 60.0%
CAAGCACCAGCAAGCCATGG+TGG - chr8_1:16870577-16870596 None:intergenic 60.0%
GCCCACCCAAATTGGCACCG+GGG + chr8_1:16867593-16867612 Msa1182020:intron 65.0%
! CTCCCCGGTGCCAATTTGGG+TGG - chr8_1:16867598-16867617 None:intergenic 65.0%
CACATGGGAGCCGGGGTAAG+TGG + chr8_1:16869806-16869825 Msa1182020:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 16866759 16870887 16866759 ID=Msa1182020;Name=Msa1182020
chr8_1 mRNA 16866759 16870887 16866759 ID=Msa1182020-mRNA-1;Parent=Msa1182020;Name=Msa1182020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|1|1|1|1|5|206|476
chr8_1 exon 16866759 16866932 16866759 ID=Msa1182020-mRNA-1:exon:6287;Parent=Msa1182020-mRNA-1
chr8_1 exon 16868105 16868359 16868105 ID=Msa1182020-mRNA-1:exon:6288;Parent=Msa1182020-mRNA-1
chr8_1 exon 16868782 16868904 16868782 ID=Msa1182020-mRNA-1:exon:6289;Parent=Msa1182020-mRNA-1
chr8_1 exon 16869695 16870180 16869695 ID=Msa1182020-mRNA-1:exon:6290;Parent=Msa1182020-mRNA-1
chr8_1 exon 16870289 16870887 16870289 ID=Msa1182020-mRNA-1:exon:6291;Parent=Msa1182020-mRNA-1
chr8_1 CDS 16866759 16866932 16866759 ID=Msa1182020-mRNA-1:cds;Parent=Msa1182020-mRNA-1
chr8_1 CDS 16868105 16868359 16868105 ID=Msa1182020-mRNA-1:cds;Parent=Msa1182020-mRNA-1
chr8_1 CDS 16868782 16868904 16868782 ID=Msa1182020-mRNA-1:cds;Parent=Msa1182020-mRNA-1
chr8_1 CDS 16869695 16870180 16869695 ID=Msa1182020-mRNA-1:cds;Parent=Msa1182020-mRNA-1
chr8_1 CDS 16870289 16870681 16870289 ID=Msa1182020-mRNA-1:cds;Parent=Msa1182020-mRNA-1
chr8_1 three_prime_UTR 16870682 16870887 16870682 ID=Msa1182020-mRNA-1:three_prime_utr;Parent=Msa1182020-mRNA-1
Gene Sequence

>Msa1182020

GAACAGGTTATCAGTGGAACGATCAATGAGAATGGCTGCGTGTTGGTTAAGGCTACACATGTTGGATCAGACACTGCCCTTTCTCAAATTGTTCAACTCGTAGAAGCTGCTCAACTTGCCAAAGCACCAGTTCAAAAACTTGCGGACGATATTTCAAGGGTTTTTGTTCCAATTGTGGTAGTTGCAGCACTCACAACTTGGCTGGGATGGTTCATTCCTGGGAAAGCTGGATTTTACCCTAAACATTGGATACCAAAAGGAATGGATGCATTTGAGCTTGCTTTGCAGTTTGCTATTTCTGTGTTAGTTGTTGCTTGTCCATGTGCTCTCGGTCTAGCTACACCAACTGCAGTCATGGTTGCTTCAGGCATAGGTGCTTCTCAAGGAGTGCTCATCAAAGGTGGAGATGCACTAGAGAAGGCACACAAGGTAAAAACTATTGTATTTGATAAAACTGGGACACTAACTATTGGAAAACCAGAAGTAGTTAGTGCAGTGCTGCTTTCTGAATTTTCTATGGAGGTGTTATGTGACATGGCAATTTCTGTGGAGGCAAATAGTGAACACCCAATAGCCAAAGCTGTTGTGGCACATGCAAAGAAGTTGCGCAAGAATTTTGGTTCTTGCCCTGAGGAAGTGCCGGATGTTGTTGATTTTGAGGTACACATGGGAGCCGGGGTAAGTGGAAAAGTTGGTGATAGAACAGTTTTAGTTGGAAACAAGAGACTCATGCATGCTTGTAATGTTAAAATATCTTCCGAAGCAGAGAAGTACATCTCTGAAAATGAGATTCTAGCTAGAACTTGTGTTTTAGTTTCAATTAATGGAAAGATTGCTGGAGCATTCTCTGTATCTGATCCAGTAAAGCCAGAGGCTAAACGTGTTATATCATTTCTCCACTCCATGGGCATCACAAGTGTCATTGTGACTGGTGATAACCATGCTACTGCGATTGCTATTGCAAATGAAGTTGGTATTGATCAGGTCTTTGCGGAGACAGATCCAGTAGGAAAAGCTGATAAGGTGAAAGAATTGCAGATGAGAGGAATGAGTGTGGCAATGGTTGGTGATGGAATAAACGACTCTCCGGCATTGGTTGCTGCTGATGTTGGTATGGCAATTGGTGCTGGAACTGATGTAGCTATAGAAGCTGCTGATATAGTTCTGATCAAAAGTAACTTGGAAGATGTGATTACAGCCATAGATCTATCCAGAAAGACCATGTCTCGTATCCGGCTGAACTACATTTGGGCTCTTGGTTACAACATTTTAGGAATGCCAATTGCTGCTGGTGTTTTGTACCCTTTTACTGGAATCAGATTGCCACCATGGCTTGCTGGTGCTTGCATGGCTGCGTCTTCTCTTAGTGTGGTTTCTTCGTCTCTTTTGCTGCAGTTCTATAAAAAACCTTTCCATGTAGAGTCCATTTAA
Protein sequence

>Msa1182020

EQVISGTINENGCVLVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADDISRVFVPIVVVAALTTWLGWFIPGKAGFYPKHWIPKGMDAFELALQFAISVLVVACPCALGLATPTAVMVASGIGASQGVLIKGGDALEKAHKVKTIVFDKTGTLTIGKPEVVSAVLLSEFSMEVLCDMAISVEANSEHPIAKAVVAHAKKLRKNFGSCPEEVPDVVDFEVHMGAGVSGKVGDRTVLVGNKRLMHACNVKISSEAEKYISENEILARTCVLVSINGKIAGAFSVSDPVKPEAKRVISFLHSMGITSVIVTGDNHATAIAIANEVGIDQVFAETDPVGKADKVKELQMRGMSVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSNLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPFHVESI*