AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1188130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188130 MtrunA17_Chr8g0355191 94.545 385 15 3 16 395 14 397 0.0 755
Msa1188130 MtrunA17_Chr8g0355181 72.277 404 92 10 1 401 1 387 0.0 521
Msa1188130 MtrunA17_Chr4g0073521 76.023 171 41 0 56 226 46 216 1.01e-95 291
Msa1188130 MtrunA17_Chr7g0216601 62.555 227 68 3 48 271 56 268 7.20e-92 282
Msa1188130 MtrunA17_Chr4g0002011 59.592 245 68 5 52 265 31 275 1.10e-86 266
Msa1188130 MtrunA17_Chr6g0452911 69.318 176 44 1 61 226 65 240 1.06e-83 261
Msa1188130 MtrunA17_Chr8g0362541 66.832 202 52 2 56 243 68 268 1.61e-80 254
Msa1188130 MtrunA17_Chr5g0400871 65.934 182 57 2 43 221 237 416 9.25e-78 250
Msa1188130 MtrunA17_Chr2g0328971 54.661 236 93 4 5 228 105 338 9.07e-77 247
Msa1188130 MtrunA17_Chr4g0072291 66.864 169 53 1 56 221 158 326 1.85e-76 246
Msa1188130 MtrunA17_Chr4g0072291 43.023 86 41 1 153 230 156 241 1.26e-12 69.3
Msa1188130 MtrunA17_Chr8g0343851 55.607 214 91 1 56 265 247 460 3.21e-76 247
Msa1188130 MtrunA17_Chr3g0135161 57.080 226 85 4 1 221 256 474 9.70e-76 248
Msa1188130 MtrunA17_Chr1g0152161 56.388 227 85 4 1 221 258 476 1.96e-75 247
Msa1188130 MtrunA17_Chr7g0249621 66.477 176 56 1 56 228 258 433 2.79e-75 247
Msa1188130 MtrunA17_Chr4g0032631 62.921 178 63 1 56 230 162 339 3.87e-75 243
Msa1188130 MtrunA17_Chr4g0054351 54.386 228 92 5 8 230 267 487 3.05e-72 239
Msa1188130 MtrunA17_Chr5g0412151 67.456 169 52 1 56 221 223 391 8.36e-67 221
Msa1188130 MtrunA17_Chr5g0412151 43.023 86 41 1 153 230 221 306 6.23e-13 70.5
Msa1188130 MtrunA17_Chr8g0367311 69.531 128 39 0 94 221 22 149 6.53e-58 190
Msa1188130 MtrunA17_Chr2g0305821 73.874 111 29 0 57 167 47 157 2.18e-48 162
Msa1188130 MtrunA17_Chr7g0257361 53.514 185 76 4 4 185 6 183 2.32e-47 167
Msa1188130 MtrunA17_Chr7g0263581 46.875 192 86 4 61 244 140 323 6.88e-41 151
Msa1188130 MtrunA17_Chr5g0401891 52.381 168 72 2 61 228 153 312 2.35e-40 150
Msa1188130 MtrunA17_Chr4g0053181 52.976 168 65 3 61 225 177 333 4.97e-40 149
Msa1188130 MtrunA17_Chr4g0030191 45.408 196 93 3 61 253 132 316 5.72e-38 143
Msa1188130 MtrunA17_Chr2g0305831 57.143 98 38 1 163 260 1 94 4.02e-32 121
Msa1188130 MtrunA17_Chr2g0325911 45.550 191 75 4 39 226 113 277 2.21e-30 121
Msa1188130 MtrunA17_Chr3g0126151 40.984 122 61 2 86 197 18 138 1.25e-21 90.5
Msa1188130 MtrunA17_Chr1g0170761 38.411 151 71 5 37 176 106 245 6.07e-12 66.6
Msa1188130 MtrunA17_Chr8g0367321 57.447 47 20 0 47 93 145 191 1.14e-11 63.9
Msa1188130 MtrunA17_Chr5g0432821 40.777 103 54 3 143 241 103 202 6.44e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188130 AT3G54320.3 55.432 359 124 12 21 351 27 377 3.58e-99 302
Msa1188130 AT3G54320.1 55.432 359 124 12 21 351 27 377 5.07e-99 302
Msa1188130 AT1G79700.2 63.274 226 71 4 45 260 37 260 2.52e-78 245
Msa1188130 AT5G57390.2 60.476 210 75 4 15 221 45 249 3.42e-78 249
Msa1188130 AT5G57390.2 38.835 103 47 2 153 247 79 173 8.98e-12 67.0
Msa1188130 AT5G57390.1 60.476 210 75 4 15 221 163 367 2.84e-77 250
Msa1188130 AT5G57390.1 38.835 103 47 2 153 247 197 291 8.24e-12 67.4
Msa1188130 AT1G16060.1 69.841 189 53 2 45 230 43 230 6.60e-76 240
Msa1188130 AT1G51190.1 64.607 178 60 1 56 230 186 363 3.80e-75 244
Msa1188130 AT1G51190.1 40.741 108 48 3 147 246 178 277 2.47e-12 68.9
Msa1188130 AT5G17430.2 65.341 176 58 1 56 228 144 319 1.25e-74 242
Msa1188130 AT5G17430.2 40.196 102 45 3 153 246 142 235 4.37e-11 65.1
Msa1188130 AT4G37750.1 50.813 246 115 3 14 255 239 482 1.26e-74 243
Msa1188130 AT5G17430.1 65.341 176 58 1 56 228 206 381 2.96e-74 243
Msa1188130 AT5G17430.1 40.196 102 45 3 153 246 204 297 4.23e-11 65.1
Msa1188130 AT3G20840.1 63.636 176 61 1 56 228 177 352 1.37e-73 241
Msa1188130 AT3G20840.1 38.889 108 50 3 147 246 169 268 1.28e-11 67.0
Msa1188130 AT1G72570.1 56.279 215 82 4 12 221 180 387 1.56e-73 236
Msa1188130 AT5G65510.4 60.302 199 76 1 26 221 139 337 4.50e-70 228
Msa1188130 AT5G65510.2 60.302 199 76 1 26 221 197 395 7.03e-70 229
Msa1188130 AT5G65510.1 60.302 199 76 1 26 221 197 395 7.03e-70 229
Msa1188130 AT3G54320.4 53.571 280 104 8 94 351 36 311 2.77e-69 223
Msa1188130 AT3G54320.5 53.571 280 104 8 94 351 36 311 2.77e-69 223
Msa1188130 AT1G79700.1 58.850 226 71 5 45 260 37 250 7.10e-68 218
Msa1188130 AT5G10510.2 60.714 196 76 1 26 221 197 391 1.64e-67 224
Msa1188130 AT5G10510.7 59.799 199 76 2 26 221 197 394 2.28e-65 218
Msa1188130 AT5G10510.7 36.893 103 49 2 153 247 224 318 1.56e-11 66.6
Msa1188130 AT5G10510.5 59.799 199 76 2 26 221 197 394 2.28e-65 218
Msa1188130 AT5G10510.5 36.893 103 49 2 153 247 224 318 1.56e-11 66.6
Msa1188130 AT5G10510.1 59.799 199 76 2 26 221 220 417 3.05e-65 218
Msa1188130 AT5G10510.1 36.893 103 49 2 153 247 247 341 1.38e-11 66.6
Msa1188130 AT5G10510.6 59.799 199 76 2 26 221 235 432 3.49e-65 219
Msa1188130 AT5G10510.6 36.893 103 49 2 153 247 262 356 1.23e-11 67.0
Msa1188130 AT5G10510.4 59.799 199 76 2 26 221 235 432 3.49e-65 219
Msa1188130 AT5G10510.4 36.893 103 49 2 153 247 262 356 1.23e-11 67.0
Msa1188130 AT5G65510.3 58.333 168 67 1 26 190 139 306 3.26e-63 206
Msa1188130 AT5G65510.3 43.023 86 40 2 158 235 172 256 6.68e-12 66.6
Msa1188130 AT5G10510.3 53.881 219 77 2 26 221 235 452 4.98e-61 208
Msa1188130 AT1G79700.3 63.218 174 55 3 94 260 13 184 1.84e-54 181
Msa1188130 AT1G79700.4 63.218 174 55 3 94 260 7 178 1.89e-54 181
Msa1188130 AT1G16060.3 74.453 137 34 1 94 230 25 160 7.53e-52 175
Msa1188130 AT2G41710.1 41.897 253 134 4 23 272 34 276 9.26e-46 163
Msa1188130 AT2G41710.4 41.897 253 134 4 23 272 34 276 9.65e-46 164
Msa1188130 AT3G54320.2 49.167 240 96 8 134 351 1 236 3.98e-45 158
Msa1188130 AT2G41710.2 41.085 258 134 5 23 272 34 281 2.28e-43 157
Msa1188130 AT4G36920.1 52.047 171 68 3 61 228 132 291 1.40e-40 149
Msa1188130 AT4G36920.2 52.047 171 68 3 61 228 132 291 1.40e-40 149
Msa1188130 AT1G16060.2 78.351 97 20 1 134 230 1 96 2.03e-40 143
Msa1188130 AT1G16060.4 78.351 97 20 1 134 230 1 96 2.03e-40 143
Msa1188130 AT1G16060.6 78.351 97 20 1 134 230 1 96 2.03e-40 143
Msa1188130 AT1G16060.5 78.351 97 20 1 134 230 1 96 2.03e-40 143
Msa1188130 AT5G67180.2 47.150 193 90 3 61 253 97 277 2.24e-40 145
Msa1188130 AT5G67180.3 52.174 161 69 2 61 221 97 249 7.82e-40 144
Msa1188130 AT2G28550.3 50.000 174 73 3 61 231 154 316 8.09e-40 148
Msa1188130 AT5G67180.1 47.150 193 90 3 61 253 97 277 9.32e-40 145
Msa1188130 AT2G41710.3 36.395 294 139 5 23 278 34 317 2.78e-39 147
Msa1188130 AT2G28550.4 50.365 137 60 2 61 197 154 282 6.73e-31 121
Msa1188130 AT2G28550.1 45.977 174 65 4 61 231 154 301 1.02e-30 123
Msa1188130 AT5G67180.4 50.365 137 60 2 61 197 97 225 2.05e-30 118
Msa1188130 AT2G28550.2 50.794 126 48 3 61 183 154 268 5.46e-25 103
Msa1188130 AT2G28550.6 50.794 126 48 3 61 183 154 268 5.46e-25 103
Msa1188130 AT1G16060.7 72.973 74 19 1 157 230 2 74 1.68e-23 97.4
Msa1188130 AT2G28550.5 46.377 138 58 2 94 231 14 135 2.39e-23 99.4
Msa1188130 AT2G39250.2 43.443 122 62 1 40 161 88 202 2.36e-21 92.8
Msa1188130 AT2G39250.1 43.443 122 62 1 40 161 88 202 4.51e-21 93.6
Msa1188130 AT5G60120.4 45.185 135 66 2 48 182 148 274 7.31e-20 91.3
Msa1188130 AT5G60120.3 45.185 135 66 2 48 182 148 274 7.31e-20 91.3
Msa1188130 AT5G60120.5 45.185 135 66 2 48 182 148 274 7.31e-20 91.3
Msa1188130 AT5G60120.6 45.652 138 61 3 48 182 148 274 8.45e-20 91.7
Msa1188130 AT5G60120.1 45.652 138 61 3 48 182 148 274 9.63e-20 91.7
Msa1188130 AT5G60120.2 45.652 138 61 3 48 182 148 274 1.17e-19 91.3
Msa1188130 AT3G54990.2 45.192 104 50 1 61 164 123 219 2.14e-16 79.0
Msa1188130 AT3G54990.1 45.192 104 50 1 61 164 123 219 6.93e-16 79.0
Msa1188130 AT4G27950.1 39.423 104 55 4 159 261 117 213 4.08e-11 64.3

Find 78 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTAACAAATACCTCTATT+TGG 0.186609 8_1:-28183663 Msa1188130:CDS
TCCAATGCTTCTTCGGAATC+AGG 0.245762 8_1:+28181363 None:intergenic
TCATCATCTTCATCTTCTAT+TGG 0.261290 8_1:-28186173 Msa1188130:CDS
GAAGATTTGAAGCTCATCTA+TGG 0.274505 8_1:-28185861 Msa1188130:CDS
CCATGGAGCTTCATGTATAA+TGG 0.274823 8_1:-28181195 Msa1188130:CDS
AAATCAAGATGCCGAAAATA+TGG 0.299269 8_1:-28180977 Msa1188130:CDS
ATGCGCAATAGTTAATATTA+TGG 0.304733 8_1:-28181241 Msa1188130:CDS
TATCAATATCGGTGAAGTTT+TGG 0.306250 8_1:-28181016 Msa1188130:CDS
TTCTACTTCCACCATTTGTT+TGG 0.311885 8_1:+28186054 None:intergenic
ATCTATGGGATAAGACTTCT+TGG 0.321379 8_1:-28185846 Msa1188130:CDS
TGCAAAAGAGTTTGAGGAAA+TGG 0.326215 8_1:-28184390 Msa1188130:CDS
GTAGTTGCTTATGTCAAAAT+TGG 0.328027 8_1:+28181467 None:intergenic
GATTTAATGAATATATTTGA+TGG 0.346591 8_1:-28181120 Msa1188130:CDS
TCTTGCAGCACTCAAGTATT+GGG 0.356416 8_1:-28185081 Msa1188130:CDS
TTGTTCTTCCAATGCTTCTT+CGG 0.362093 8_1:+28181356 None:intergenic
GAGCTTCCCACCGACCATTA+TGG 0.381198 8_1:+28183702 None:intergenic
TTGAATAGGCATCACCATAA+TGG 0.407675 8_1:-28183716 Msa1188130:intron
GGTAACAAATACCTCTATTT+GGG 0.408649 8_1:-28183662 Msa1188130:CDS
CTAAATACCGTGGGGTTGCC+AGG 0.413317 8_1:-28184298 Msa1188130:intron
GGCAGCAGTGGCTTATGATA+TGG 0.413991 8_1:-28181523 Msa1188130:CDS
CTTGAGTGCTGCAAGATCAT+AGG 0.421646 8_1:+28185088 None:intergenic
ATCTTGCAGCACTCAAGTAT+TGG 0.430524 8_1:-28185082 Msa1188130:CDS
AACTTATGCAAAAGAGTTTG+AGG 0.450069 8_1:-28184396 Msa1188130:CDS
CCCTGATTCCGAAGAAGCAT+TGG 0.450167 8_1:-28181364 Msa1188130:CDS
AAGAGTATTTGAACTCTTTG+CGG 0.450951 8_1:-28184352 Msa1188130:CDS
TACTGTATGTGCCCAAATAG+AGG 0.461718 8_1:+28183651 None:intergenic
CCAATGCTTCTTCGGAATCA+GGG 0.466066 8_1:+28181364 None:intergenic
TGAAGCTCCATGGATAATCT+TGG 0.475912 8_1:+28181205 None:intergenic
GGTGAAAGTGATATCAATAT+CGG 0.479712 8_1:-28181027 Msa1188130:CDS
CTATTTACAGAGGAGTTACA+AGG 0.483023 8_1:-28186025 Msa1188130:intron
ATTGCGCATTCATGACTAGT+TGG 0.500701 8_1:+28181255 None:intergenic
AACTCAAGAAGAGGCAGCAG+TGG 0.504028 8_1:-28181535 Msa1188130:CDS
CAACTACATGGACAAATTGA+AGG 0.505278 8_1:-28181451 Msa1188130:CDS
CAAATTAGACATAGGTGGAC+TGG 0.506410 8_1:-28185883 Msa1188130:intron
GAACCTTGTGGTGGTGGTCG+TGG 0.508446 8_1:-28181048 Msa1188130:CDS
TTTGTATCATTCAAATGAAG+AGG 0.512964 8_1:-28186214 None:intergenic
ACAATTTCTGTGTTTGATTG+TGG 0.530549 8_1:+28181396 None:intergenic
ACGGAAGAACCTTGTGGTGG+TGG 0.534175 8_1:-28181054 Msa1188130:CDS
GAACAAGATTCAGAACAAGA+AGG 0.536583 8_1:-28185824 Msa1188130:CDS
TGAGAATAGTAACAAGGAGA+AGG 0.537399 8_1:-28180947 Msa1188130:CDS
CCATTATACATGAAGCTCCA+TGG 0.539343 8_1:+28181195 None:intergenic
GAGGACTTTCTAAATACCGT+GGG 0.549435 8_1:-28184307 Msa1188130:CDS
TATTGAAGAAACTCAAGAAG+AGG 0.551880 8_1:-28181544 Msa1188130:intron
TGTTGAAATTGTTGCTGCGA+AGG 0.552598 8_1:+28181288 None:intergenic
GGTCGGTGGGAAGCTCGCAT+TGG 0.557991 8_1:-28183695 Msa1188130:CDS
TTGATCAAATTAGACATAGG+TGG 0.563648 8_1:-28185888 Msa1188130:intron
TTGTCAGAGTTTCAAGACAC+AGG 0.563746 8_1:-28181171 Msa1188130:CDS
GCTCGCATTGGAAGAGTTCG+TGG 0.568186 8_1:-28183683 Msa1188130:CDS
GCGCATTCATGACTAGTTGG+AGG 0.568657 8_1:+28181258 None:intergenic
GATGATGAACTTGAAGATGG+TGG 0.569284 8_1:+28186188 None:intergenic
AAGATTTGAAGCTCATCTAT+GGG 0.572069 8_1:-28185860 Msa1188130:CDS
CAGAACAAGAAGGGAAAACA+AGG 0.573233 8_1:-28185814 Msa1188130:intron
AACAAGATTCAGAACAAGAA+GGG 0.581787 8_1:-28185823 Msa1188130:CDS
AGATGCCGAAAATATGGTTG+TGG 0.585464 8_1:-28180971 Msa1188130:CDS
CAATGCTTCTTCGGAATCAG+GGG 0.588294 8_1:+28181365 None:intergenic
GAAGATGATGAACTTGAAGA+TGG 0.588912 8_1:+28186185 None:intergenic
GGCATCACCATAATGGTCGG+TGG 0.592230 8_1:-28183709 Msa1188130:CDS
GCTTATGTCAAAATTGGTCA+CGG 0.594258 8_1:+28181473 None:intergenic
CTTGCAGCACTCAAGTATTG+GGG 0.601900 8_1:-28185080 Msa1188130:CDS
TCTTTGCGGCGGCAAAGCAG+TGG 0.603859 8_1:-28184338 Msa1188130:CDS
GCATCACCATAATGGTCGGT+GGG 0.611752 8_1:-28183708 Msa1188130:CDS
AGAGGACTTTCTAAATACCG+TGG 0.626454 8_1:-28184308 Msa1188130:CDS
CATCTAACCTGGCAACCCCA+CGG 0.646913 8_1:+28184291 None:intergenic
AGAAGAAGCTCTATTTACAG+AGG 0.648550 8_1:-28186035 Msa1188130:CDS
TCACCACGACCACCACCACA+AGG 0.649319 8_1:+28181045 None:intergenic
TTGCAGCACTCAAGTATTGG+GGG 0.650524 8_1:-28185079 Msa1188130:CDS
TGTGGATGAGAATAGTAACA+AGG 0.651136 8_1:-28180953 Msa1188130:CDS
AGTATTTGAACTCTTTGCGG+CGG 0.655198 8_1:-28184349 Msa1188130:CDS
CTACATGGACAAATTGAAGG+TGG 0.658749 8_1:-28181448 Msa1188130:CDS
GGTTCGACTATGAGTAAGTG+TGG 0.660392 8_1:-28181150 Msa1188130:CDS
ATAGGCATCACCATAATGGT+CGG 0.667124 8_1:-28183712 Msa1188130:intron
TAGTTACAAAGAAACTGTAG+TGG 0.679816 8_1:+28180879 None:intergenic
ATTTGAACTTATGTTCAACA+CGG 0.681855 8_1:-28181073 Msa1188130:CDS
ACTGTAGTGGTTGAAGATGA+CGG 0.701675 8_1:+28180892 None:intergenic
AACACGGAAGAACCTTGTGG+TGG 0.703150 8_1:-28181057 Msa1188130:CDS
AGGACTTTCTAAATACCGTG+GGG 0.721413 8_1:-28184306 Msa1188130:CDS
TTCAACACGGAAGAACCTTG+TGG 0.731490 8_1:-28181060 Msa1188130:CDS
ATGGCAGCAATAAAGCACAG+AGG 0.789593 8_1:-28181504 Msa1188130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATTATTATTGATTTG+TGG - chr8_1:28181896-28181915 Msa1188130:intron 10.0%
!!! ATTATTTAGTTTTTCTAAAT+TGG - chr8_1:28182055-28182074 Msa1188130:intron 10.0%
!! ATATGTTAAATTAAATTGTA+CGG + chr8_1:28182604-28182623 None:intergenic 10.0%
!! ATAATATTATTAAAGTAATG+TGG + chr8_1:28183256-28183275 None:intergenic 10.0%
!!! AAACAATTTTTGATAAAAAA+TGG + chr8_1:28183481-28183500 None:intergenic 10.0%
!! TATATAATTAATATGAAACA+CGG + chr8_1:28183827-28183846 None:intergenic 10.0%
!!! AAGATTTTTTTTATTAAAAG+TGG + chr8_1:28184564-28184583 None:intergenic 10.0%
!!! ACATATTTTCATTTTTATTA+TGG + chr8_1:28184795-28184814 None:intergenic 10.0%
!! TAAAAAGTTAACTAAAAAAA+TGG - chr8_1:28184858-28184877 Msa1188130:intron 10.0%
!!! TTTTGAAGTTAATTTAAAAT+TGG + chr8_1:28185071-28185090 None:intergenic 10.0%
!!! GAAAAACTAAATAATTTTAC+CGG + chr8_1:28182050-28182069 None:intergenic 15.0%
!!! TATTTTTTAGAGATTGATAT+TGG - chr8_1:28182330-28182349 Msa1188130:intron 15.0%
!!! ATTTTCTGTGTTAATTTTAA+AGG - chr8_1:28182577-28182596 Msa1188130:intron 15.0%
!!! TTTTCTGTGTTAATTTTAAA+GGG - chr8_1:28182578-28182597 Msa1188130:intron 15.0%
!!! ATTAATCTTACTTTTTGAAT+AGG - chr8_1:28183352-28183371 Msa1188130:intron 15.0%
!! ACATAATTTAGTGTAATTAT+AGG - chr8_1:28183743-28183762 Msa1188130:intron 15.0%
!!! ATTAGTATAATTTTACACTA+AGG + chr8_1:28184216-28184235 None:intergenic 15.0%
!!! TTTTTTTTGTCTTCTTTTTT+TGG - chr8_1:28184363-28184382 Msa1188130:CDS 15.0%
!! TTTCACTATTATTATATTCT+AGG - chr8_1:28184814-28184833 Msa1188130:intron 15.0%
!! TTGTTTATAGTAATATTGTA+CGG + chr8_1:28185095-28185114 None:intergenic 15.0%
!! GATTTAATGAATATATTTGA+TGG - chr8_1:28185962-28185981 Msa1188130:intron 15.0%
!!! TTTTTTTTCACTGATTGAAT+TGG + chr8_1:28180945-28180964 None:intergenic 20.0%
!! AATTCAATCAGTGAAAAAAA+AGG - chr8_1:28180944-28180963 Msa1188130:CDS 20.0%
!! ATTCAATCAGTGAAAAAAAA+GGG - chr8_1:28180945-28180964 Msa1188130:CDS 20.0%
!!! TTGACATTGAGATTTTTTTT+TGG + chr8_1:28180981-28181000 None:intergenic 20.0%
!!! ACTATGTTTTTTTTAGTGTT+TGG - chr8_1:28181298-28181317 Msa1188130:CDS 20.0%
!!! TTTCAAATTATTTTCCGTAT+CGG + chr8_1:28181396-28181415 None:intergenic 20.0%
!! ATATAATTCAGTGTAATCAT+CGG - chr8_1:28181422-28181441 Msa1188130:CDS 20.0%
!!! TTTTTGGTGTATTTTTTTTC+TGG - chr8_1:28181535-28181554 Msa1188130:CDS 20.0%
!!! CTGGTGAATTTTTTATTATT+TGG - chr8_1:28181554-28181573 Msa1188130:intron 20.0%
!! AGATTCTGATTAACTTAATT+TGG - chr8_1:28181921-28181940 Msa1188130:intron 20.0%
!! TTTGGTTATTATGTTGATAT+AGG - chr8_1:28181939-28181958 Msa1188130:intron 20.0%
!!! GTCATTTCAAATAATTTTCA+AGG - chr8_1:28182170-28182189 Msa1188130:intron 20.0%
!! TTGTTGAAAATTTCAAACAT+TGG + chr8_1:28182227-28182246 None:intergenic 20.0%
!! TCAACAATAACATTAATACA+TGG - chr8_1:28182240-28182259 Msa1188130:intron 20.0%
!! CTAAAAAATAGTTCAAAGAA+GGG + chr8_1:28182320-28182339 None:intergenic 20.0%
!! TCTAAAAAATAGTTCAAAGA+AGG + chr8_1:28182321-28182340 None:intergenic 20.0%
!!! GAATATTATTGACTATTAGA+CGG + chr8_1:28182397-28182416 None:intergenic 20.0%
!! AATTTATTAGACACAAAAAG+TGG - chr8_1:28182424-28182443 Msa1188130:intron 20.0%
!! ATTTATTAGACACAAAAAGT+GGG - chr8_1:28182425-28182444 Msa1188130:intron 20.0%
!! CTATGGAAAAAAAATTAGTT+AGG + chr8_1:28182460-28182479 None:intergenic 20.0%
!! ATAATATTATGTACATGACT+TGG - chr8_1:28183266-28183285 Msa1188130:intron 20.0%
!!! CAAAAATTGTTTCAAACTTT+TGG - chr8_1:28183489-28183508 Msa1188130:intron 20.0%
!! TACTATCATAGTTTGATATT+GGG + chr8_1:28184330-28184349 None:intergenic 20.0%
!! ACAAAAAAAATATTGTTGAC+AGG + chr8_1:28184353-28184372 None:intergenic 20.0%
!! CATATATTTAACCATGAATT+TGG + chr8_1:28185415-28185434 None:intergenic 20.0%
! TGTTTGATCAAATTAGACAT+AGG - chr8_1:28181191-28181210 Msa1188130:CDS 25.0%
! GATTTGCAAAGAATAAAACA+AGG + chr8_1:28181750-28181769 None:intergenic 25.0%
!! TAATTTTACCGGAAAATTCA+AGG + chr8_1:28182039-28182058 None:intergenic 25.0%
!!! AAATCGAGTCTATTTTGTTT+TGG - chr8_1:28182090-28182109 Msa1188130:intron 25.0%
! ATAACATTAATACATGGACA+TGG - chr8_1:28182246-28182265 Msa1188130:intron 25.0%
! ATAGTCAATAATATTCGTTG+AGG - chr8_1:28182401-28182420 Msa1188130:intron 25.0%
! GAAAAAAAATTAGTTAGGAG+AGG + chr8_1:28182455-28182474 None:intergenic 25.0%
! AATTCAAATTTCTTACCACT+TGG - chr8_1:28182508-28182527 Msa1188130:intron 25.0%
! ATAGATGTATCTATCTTACA+TGG + chr8_1:28182557-28182576 None:intergenic 25.0%
! ATGAATATGTTACTAACTTG+TGG - chr8_1:28182645-28182664 Msa1188130:intron 25.0%
! TACATGTTTGATATCACATT+AGG - chr8_1:28182967-28182986 Msa1188130:intron 25.0%
!!! TGTAGTTTTTTGCAAAATCA+AGG + chr8_1:28183016-28183035 None:intergenic 25.0%
! ATGATTCATGTTTGATATCA+CGG + chr8_1:28183085-28183104 None:intergenic 25.0%
!!! AAAATGGTAATGGTACAAAT+TGG + chr8_1:28183125-28183144 None:intergenic 25.0%
!! TACCATTACCATTTTATCAA+TGG - chr8_1:28183130-28183149 Msa1188130:intron 25.0%
! TTTAGTGTAATTATAGGTGT+TGG - chr8_1:28183749-28183768 Msa1188130:intron 25.0%
! TTCTCATAATTAACGTGAAT+TGG - chr8_1:28183993-28184012 Msa1188130:intron 25.0%
! TCTCATAATTAACGTGAATT+GGG - chr8_1:28183994-28184013 Msa1188130:intron 25.0%
!! TAAATTTTCCTATGTTCCTA+TGG + chr8_1:28184138-28184157 None:intergenic 25.0%
! GTACTATCATAGTTTGATAT+TGG + chr8_1:28184331-28184350 None:intergenic 25.0%
!!! TATTGTATTATTTTGCCATG+TGG - chr8_1:28184592-28184611 Msa1188130:intron 25.0%
!!! TCATGCATTATTTGTTTTGT+TGG - chr8_1:28184615-28184634 Msa1188130:intron 25.0%
! TGCTTATCTTATAGAGTTTA+AGG + chr8_1:28184671-28184690 None:intergenic 25.0%
! TATTATGGTTTCACAAGATT+GGG + chr8_1:28184780-28184799 None:intergenic 25.0%
! TTATTATGGTTTCACAAGAT+TGG + chr8_1:28184781-28184800 None:intergenic 25.0%
!!! ATTTGTAGTTGATTTTCTTG+TGG + chr8_1:28185770-28185789 None:intergenic 25.0%
! ATGCGCAATAGTTAATATTA+TGG - chr8_1:28185841-28185860 Msa1188130:CDS 25.0%
! ATTTGAACTTATGTTCAACA+CGG - chr8_1:28186009-28186028 Msa1188130:intron 25.0%
TCATCATCTTCATCTTCTAT+TGG - chr8_1:28180909-28180928 Msa1188130:CDS 30.0%
CAGAAGAAAAACCAAACAAA+TGG - chr8_1:28181017-28181036 Msa1188130:CDS 30.0%
AAGAAAAACCAAACAAATGG+TGG - chr8_1:28181020-28181039 Msa1188130:CDS 30.0%
! ACCCTTTTGAATTTTGTTGA+TGG - chr8_1:28181136-28181155 Msa1188130:CDS 30.0%
CCCATCAACAAAATTCAAAA+GGG + chr8_1:28181140-28181159 None:intergenic 30.0%
! CCCTTTTGAATTTTGTTGAT+GGG - chr8_1:28181137-28181156 Msa1188130:CDS 30.0%
ACCCATCAACAAAATTCAAA+AGG + chr8_1:28181141-28181160 None:intergenic 30.0%
TTGATCAAATTAGACATAGG+TGG - chr8_1:28181194-28181213 Msa1188130:CDS 30.0%
! AAGATTTGAAGCTCATCTAT+GGG - chr8_1:28181222-28181241 Msa1188130:CDS 30.0%
AACAAGATTCAGAACAAGAA+GGG - chr8_1:28181259-28181278 Msa1188130:CDS 30.0%
AGACAAGTTAGAGAAAATCA+AGG - chr8_1:28181633-28181652 Msa1188130:intron 30.0%
GTTAAATTAGTCCTTGATCA+TGG + chr8_1:28182205-28182224 None:intergenic 30.0%
ATTCCTTAAATAGACGATCA+GGG + chr8_1:28182491-28182510 None:intergenic 30.0%
AATTCCTTAAATAGACGATC+AGG + chr8_1:28182492-28182511 None:intergenic 30.0%
GACATGTACCAATGATATAT+TGG + chr8_1:28182535-28182554 None:intergenic 30.0%
AACTTATGCAAAAGAGTTTG+AGG - chr8_1:28182686-28182705 Msa1188130:intron 30.0%
! GTTCAAATACTCTTCTTTTG+AGG + chr8_1:28182724-28182743 None:intergenic 30.0%
!! AAGAGTATTTGAACTCTTTG+CGG - chr8_1:28182730-28182749 Msa1188130:intron 30.0%
AAATTTGAATGCATCTAACC+TGG + chr8_1:28182805-28182824 None:intergenic 30.0%
!!! TCTAGCATATTTTGAAACCA+TGG - chr8_1:28182863-28182882 Msa1188130:intron 30.0%
TTTCATACATGTGTGATTAG+AGG - chr8_1:28182939-28182958 Msa1188130:intron 30.0%
GACCATTGATAAAATGGTAA+TGG + chr8_1:28183135-28183154 None:intergenic 30.0%
AACTTGGACCATTGATAAAA+TGG + chr8_1:28183141-28183160 None:intergenic 30.0%
ACTTGACTATGGTTATAACT+TGG + chr8_1:28183157-28183176 None:intergenic 30.0%
AACAACAAACAACTTGACTA+TGG + chr8_1:28183168-28183187 None:intergenic 30.0%
TGGTAACAAATACCTCTATT+TGG - chr8_1:28183419-28183438 Msa1188130:intron 30.0%
GGTAACAAATACCTCTATTT+GGG - chr8_1:28183420-28183439 Msa1188130:intron 30.0%
! AATTGTACTTTTCCTGCTTA+TGG + chr8_1:28183592-28183611 None:intergenic 30.0%
TACCATTCTCTAATTTCTCT+AGG + chr8_1:28183666-28183685 None:intergenic 30.0%
GTAAAAGACAAAAATGCACT+TGG - chr8_1:28183901-28183920 Msa1188130:intron 30.0%
! CAGTTTTACAAGCTGTAATT+TGG + chr8_1:28183970-28183989 None:intergenic 30.0%
TATATTTCTTCTGCAACAAG+AGG + chr8_1:28184091-28184110 None:intergenic 30.0%
TATACTACTGCATCAATTTC+TGG - chr8_1:28184107-28184126 Msa1188130:intron 30.0%
GTCAAATGTTAGATTGAACT+TGG + chr8_1:28184641-28184660 None:intergenic 30.0%
ACTCTATAAGATAAGCATGT+TGG - chr8_1:28184674-28184693 Msa1188130:intron 30.0%
TATAAGATAAGCATGTTGGA+GGG - chr8_1:28184678-28184697 Msa1188130:intron 30.0%
! ATAATTTTTGACCGACATGT+TGG + chr8_1:28184745-28184764 None:intergenic 30.0%
ATATTTGAAGAATCAGTGTC+TGG + chr8_1:28184960-28184979 None:intergenic 30.0%
AATATACAAATGTGTCACCA+AGG - chr8_1:28185178-28185197 Msa1188130:intron 30.0%
ATCTTATGCATTTATGCACT+CGG + chr8_1:28185376-28185395 None:intergenic 30.0%
TATTGAAGAAACTCAAGAAG+AGG - chr8_1:28185538-28185557 Msa1188130:intron 30.0%
GTAGTTGCTTATGTCAAAAT+TGG + chr8_1:28185618-28185637 None:intergenic 30.0%
! TTTTGACATAAGCAACTACA+TGG - chr8_1:28185619-28185638 Msa1188130:intron 30.0%
ACAATTTCTGTGTTTGATTG+TGG + chr8_1:28185689-28185708 None:intergenic 30.0%
GGTGAAAGTGATATCAATAT+CGG - chr8_1:28186055-28186074 Msa1188130:CDS 30.0%
! TATCAATATCGGTGAAGTTT+TGG - chr8_1:28186066-28186085 Msa1188130:CDS 30.0%
AAATCAAGATGCCGAAAATA+TGG - chr8_1:28186105-28186124 Msa1188130:CDS 30.0%
TGAAGAAGAAGAAGAATCTA+AGG + chr8_1:28186170-28186189 None:intergenic 30.0%
GAAGATGATGAACTTGAAGA+TGG + chr8_1:28180900-28180919 None:intergenic 35.0%
TTCTACTTCCACCATTTGTT+TGG + chr8_1:28181031-28181050 None:intergenic 35.0%
AGAAGAAGCTCTATTTACAG+AGG - chr8_1:28181047-28181066 Msa1188130:CDS 35.0%
CTATTTACAGAGGAGTTACA+AGG - chr8_1:28181057-28181076 Msa1188130:CDS 35.0%
! GAAGATTTGAAGCTCATCTA+TGG - chr8_1:28181221-28181240 Msa1188130:CDS 35.0%
ATCTATGGGATAAGACTTCT+TGG - chr8_1:28181236-28181255 Msa1188130:CDS 35.0%
GAACAAGATTCAGAACAAGA+AGG - chr8_1:28181258-28181277 Msa1188130:CDS 35.0%
TGATGAGTTTCTATGAAGCA+CGG - chr8_1:28181329-28181348 Msa1188130:CDS 35.0%
!!! GCTTCATAGATGGGTTTTTT+TGG - chr8_1:28181519-28181538 Msa1188130:CDS 35.0%
! TGCGGATGGTTTAGTTTATT+TGG - chr8_1:28181797-28181816 Msa1188130:intron 35.0%
! GCGGATGGTTTAGTTTATTT+GGG - chr8_1:28181798-28181817 Msa1188130:intron 35.0%
!!! GGTTATTTTAGCCATGATCA+AGG - chr8_1:28182191-28182210 Msa1188130:intron 35.0%
! ATAGTTCAAAGAAGGGTATG+TGG + chr8_1:28182313-28182332 None:intergenic 35.0%
TTCCTTAAATAGACGATCAG+GGG + chr8_1:28182490-28182509 None:intergenic 35.0%
CAATGATATATTGGTCCAAG+TGG + chr8_1:28182526-28182545 None:intergenic 35.0%
CACTTGGACCAATATATCAT+TGG - chr8_1:28182524-28182543 Msa1188130:intron 35.0%
TGCAAAAGAGTTTGAGGAAA+TGG - chr8_1:28182692-28182711 Msa1188130:intron 35.0%
! TGACACTTTTGCAAGTATCT+GGG - chr8_1:28183194-28183213 Msa1188130:intron 35.0%
TTGAATAGGCATCACCATAA+TGG - chr8_1:28183366-28183385 Msa1188130:intron 35.0%
CGTGACATCTTTATTAAGCA+TGG + chr8_1:28183548-28183567 None:intergenic 35.0%
TGCTTAATAAAGATGTCACG+TGG - chr8_1:28183548-28183567 Msa1188130:intron 35.0%
ACATTTGACAATCCATAAGC+AGG - chr8_1:28183577-28183596 Msa1188130:intron 35.0%
AGGAAATTAGTACTTTGCAG+AGG + chr8_1:28183618-28183637 None:intergenic 35.0%
!! GTAATTATAGGTGTTGGTGT+CGG - chr8_1:28183755-28183774 Msa1188130:intron 35.0%
GATTAGACATGTTTCAGTGT+CGG + chr8_1:28183794-28183813 None:intergenic 35.0%
ACACTGAAACATGTCTAATC+TGG - chr8_1:28183794-28183813 Msa1188130:intron 35.0%
! TGGGTTAAAGCTGGAATTTT+AGG - chr8_1:28184013-28184032 Msa1188130:intron 35.0%
!! TAGATTTTAACCTTTGCAGC+TGG + chr8_1:28184167-28184186 None:intergenic 35.0%
CAATTTCCAGTATTGTTGAC+AGG + chr8_1:28184398-28184417 None:intergenic 35.0%
ACAAATAATGCATGACCACA+TGG + chr8_1:28184610-28184629 None:intergenic 35.0%
CTATAAGATAAGCATGTTGG+AGG - chr8_1:28184677-28184696 Msa1188130:intron 35.0%
ATTCCAAATCCATCTAACCT+TGG + chr8_1:28185198-28185217 None:intergenic 35.0%
AGACATGAATCGAGATTAGA+TGG - chr8_1:28185262-28185281 Msa1188130:intron 35.0%
!! ATAAGATTTTGACCGCATAC+AGG - chr8_1:28185389-28185408 Msa1188130:intron 35.0%
GCTTATGTCAAAATTGGTCA+CGG + chr8_1:28185612-28185631 None:intergenic 35.0%
CAACTACATGGACAAATTGA+AGG - chr8_1:28185631-28185650 Msa1188130:intron 35.0%
TTGTTCTTCCAATGCTTCTT+CGG + chr8_1:28185729-28185748 None:intergenic 35.0%
!! TGTAGTTGATTTTCTTGTGG+AGG + chr8_1:28185767-28185786 None:intergenic 35.0%
!! GTTTTGACCAAGATTATCCA+TGG - chr8_1:28185870-28185889 Msa1188130:CDS 35.0%
!!! AATATCGGTGAAGTTTTGGA+GGG - chr8_1:28186070-28186089 Msa1188130:CDS 35.0%
! CTCATCCACAACCATATTTT+CGG + chr8_1:28186119-28186138 None:intergenic 35.0%
TGTGGATGAGAATAGTAACA+AGG - chr8_1:28186129-28186148 Msa1188130:CDS 35.0%
TGAGAATAGTAACAAGGAGA+AGG - chr8_1:28186135-28186154 Msa1188130:CDS 35.0%
GATGATGAACTTGAAGATGG+TGG + chr8_1:28180897-28180916 None:intergenic 40.0%
CAAATTAGACATAGGTGGAC+TGG - chr8_1:28181199-28181218 Msa1188130:CDS 40.0%
CAGAACAAGAAGGGAAAACA+AGG - chr8_1:28181268-28181287 Msa1188130:CDS 40.0%
AGTGTCTCTGCTTCATAGAT+GGG - chr8_1:28181510-28181529 Msa1188130:CDS 40.0%
ATCTTGCAGCACTCAAGTAT+TGG - chr8_1:28182000-28182019 Msa1188130:intron 40.0%
TCTTGCAGCACTCAAGTATT+GGG - chr8_1:28182001-28182020 Msa1188130:intron 40.0%
! CGATGCAACCTTGAATTTTC+CGG - chr8_1:28182028-28182047 Msa1188130:intron 40.0%
CGATCAGGGGTTTAATTCTA+TGG + chr8_1:28182477-28182496 None:intergenic 40.0%
AACCCCTGATCGTCTATTTA+AGG - chr8_1:28182485-28182504 Msa1188130:intron 40.0%
AGTATTTGAACTCTTTGCGG+CGG - chr8_1:28182733-28182752 Msa1188130:intron 40.0%
! CAAAGCAGTGGTTTTTCTAG+AGG - chr8_1:28182756-28182775 Msa1188130:intron 40.0%
AGAGGACTTTCTAAATACCG+TGG - chr8_1:28182774-28182793 Msa1188130:intron 40.0%
GAGGACTTTCTAAATACCGT+GGG - chr8_1:28182775-28182794 Msa1188130:intron 40.0%
AGGACTTTCTAAATACCGTG+GGG - chr8_1:28182776-28182795 Msa1188130:intron 40.0%
! GTGACACTTTTGCAAGTATC+TGG - chr8_1:28183193-28183212 Msa1188130:intron 40.0%
ATAGGCATCACCATAATGGT+CGG - chr8_1:28183370-28183389 Msa1188130:intron 40.0%
TACTGTATGTGCCCAAATAG+AGG + chr8_1:28183434-28183453 None:intergenic 40.0%
CTAATTTCTCTAGGCCTTTG+TGG + chr8_1:28183657-28183676 None:intergenic 40.0%
GGCCTAGAGAAATTAGAGAA+TGG - chr8_1:28183661-28183680 Msa1188130:CDS 40.0%
AACGTGAATTGGGTTAAAGC+TGG - chr8_1:28184004-28184023 Msa1188130:intron 40.0%
!! TCAATTTCTGGTCTCACCAT+AGG - chr8_1:28184119-28184138 Msa1188130:intron 40.0%
TTTAATACAGCCAGCTGCAA+AGG - chr8_1:28184154-28184173 Msa1188130:intron 40.0%
! GAAGTACCTGTCAACAATAC+TGG - chr8_1:28184389-28184408 Msa1188130:CDS 40.0%
TGTAGATACTGCATGAGTCA+AGG + chr8_1:28184714-28184733 None:intergenic 40.0%
ATCACTATTCACGTGCTTAC+TGG + chr8_1:28184937-28184956 None:intergenic 40.0%
AATGTGTCACCAAGGTTAGA+TGG - chr8_1:28185186-28185205 Msa1188130:intron 40.0%
! TCACCAAGGTTAGATGGATT+TGG - chr8_1:28185192-28185211 Msa1188130:intron 40.0%
CATTCATGCAATCGACACAT+CGG - chr8_1:28185239-28185258 Msa1188130:intron 40.0%
CTACATGGACAAATTGAAGG+TGG - chr8_1:28185634-28185653 Msa1188130:intron 40.0%
!! AGTTGATTTTCTTGTGGAGG+CGG + chr8_1:28185764-28185783 None:intergenic 40.0%
TGTTGAAATTGTTGCTGCGA+AGG + chr8_1:28185797-28185816 None:intergenic 40.0%
ATTGCGCATTCATGACTAGT+TGG + chr8_1:28185830-28185849 None:intergenic 40.0%
TGAAGCTCCATGGATAATCT+TGG + chr8_1:28185880-28185899 None:intergenic 40.0%
CCATTATACATGAAGCTCCA+TGG + chr8_1:28185890-28185909 None:intergenic 40.0%
CCATGGAGCTTCATGTATAA+TGG - chr8_1:28185887-28185906 Msa1188130:intron 40.0%
TTGTCAGAGTTTCAAGACAC+AGG - chr8_1:28185911-28185930 Msa1188130:intron 40.0%
!! CAATATCGGTGAAGTTTTGG+AGG - chr8_1:28186069-28186088 Msa1188130:CDS 40.0%
AGATGCCGAAAATATGGTTG+TGG - chr8_1:28186111-28186130 Msa1188130:CDS 40.0%
ACTGTAGTGGTTGAAGATGA+CGG + chr8_1:28186193-28186212 None:intergenic 40.0%
CACGTATACCAGATACGACA+CGG - chr8_1:28181359-28181378 Msa1188130:CDS 45.0%
ATTAGTGTCCGTGTCGTATC+TGG + chr8_1:28181370-28181389 None:intergenic 45.0%
!! TGTAATCATCGGTGTCGTGT+CGG - chr8_1:28181433-28181452 Msa1188130:CDS 45.0%
TATGAAGCAGAGACACTCCT+TGG + chr8_1:28181507-28181526 None:intergenic 45.0%
GAGTGTCTCTGCTTCATAGA+TGG - chr8_1:28181509-28181528 Msa1188130:CDS 45.0%
GCAACGTTCACAATCACTTG+CGG - chr8_1:28181779-28181798 Msa1188130:intron 45.0%
! CTTGAGTGCTGCAAGATCAT+AGG + chr8_1:28181997-28182016 None:intergenic 45.0%
! CTTGCAGCACTCAAGTATTG+GGG - chr8_1:28182002-28182021 Msa1188130:intron 45.0%
!! TTGCAGCACTCAAGTATTGG+GGG - chr8_1:28182003-28182022 Msa1188130:intron 45.0%
! TTTGAGACACAGTTGCACCA+TGG + chr8_1:28182883-28182902 None:intergenic 45.0%
GGTGCAACTGTGTCTCAAAA+CGG - chr8_1:28182884-28182903 Msa1188130:intron 45.0%
ACTGTGTCTCAAAACGGATC+CGG - chr8_1:28182890-28182909 Msa1188130:intron 45.0%
ATAGTCGACTGCAGACAATC+CGG + chr8_1:28182912-28182931 None:intergenic 45.0%
! GTGGACTGTGGACACAAATT+AGG + chr8_1:28183638-28183657 None:intergenic 45.0%
TTTGTGTCCACAGTCCACAA+AGG - chr8_1:28183640-28183659 Msa1188130:intron 45.0%
! GTTAGCATCCGTGTCTTGTT+CGG + chr8_1:28183701-28183720 None:intergenic 45.0%
TGGTCTCACCATAGGAACAT+AGG - chr8_1:28184127-28184146 Msa1188130:intron 45.0%
! TTTTGACCGACATGTTGGCA+GGG + chr8_1:28184740-28184759 None:intergenic 45.0%
! TTTTTGACCGACATGTTGGC+AGG + chr8_1:28184741-28184760 None:intergenic 45.0%
TGCTTACTGGATACTTGGGT+GGG + chr8_1:28184924-28184943 None:intergenic 45.0%
CACGTGCTTACTGGATACTT+GGG + chr8_1:28184928-28184947 None:intergenic 45.0%
TCACGTGCTTACTGGATACT+TGG + chr8_1:28184929-28184948 None:intergenic 45.0%
CATTTATGCACTCGGCACAT+TGG + chr8_1:28185368-28185387 None:intergenic 45.0%
CCATGAATTTGGCCTGTATG+CGG + chr8_1:28185404-28185423 None:intergenic 45.0%
ATGGCAGCAATAAAGCACAG+AGG - chr8_1:28185578-28185597 Msa1188130:intron 45.0%
CAATGCTTCTTCGGAATCAG+GGG + chr8_1:28185720-28185739 None:intergenic 45.0%
CCAATGCTTCTTCGGAATCA+GGG + chr8_1:28185721-28185740 None:intergenic 45.0%
TCCAATGCTTCTTCGGAATC+AGG + chr8_1:28185722-28185741 None:intergenic 45.0%
! TTGATTTTCTTGTGGAGGCG+GGG + chr8_1:28185762-28185781 None:intergenic 45.0%
!! GTTGATTTTCTTGTGGAGGC+GGG + chr8_1:28185763-28185782 None:intergenic 45.0%
GGTTCGACTATGAGTAAGTG+TGG - chr8_1:28185932-28185951 Msa1188130:intron 45.0%
TTCAACACGGAAGAACCTTG+TGG - chr8_1:28186022-28186041 Msa1188130:intron 45.0%
!!! TTTCATTTTAATTATTTTAA+TGG - chr8_1:28181696-28181715 Msa1188130:intron 5.0%
!!! TATAATTTTTTTAGATTTTA+AGG + chr8_1:28184539-28184558 None:intergenic 5.0%
CGGACACTAATACGCCGATA+CGG - chr8_1:28181379-28181398 Msa1188130:CDS 50.0%
ACTTACGCGAATCCGACACT+GGG - chr8_1:28181470-28181489 Msa1188130:CDS 50.0%
GATTAAGCGTGTCCCAGTGT+CGG + chr8_1:28181485-28181504 None:intergenic 50.0%
ACTGGGACACGCTTAATCCA+AGG - chr8_1:28181487-28181506 Msa1188130:CDS 50.0%
CGTTCACAATCACTTGCGGA+TGG - chr8_1:28181783-28181802 Msa1188130:intron 50.0%
GCATCACCATAATGGTCGGT+GGG - chr8_1:28183374-28183393 Msa1188130:intron 50.0%
!! ATCCGTGTCTTGTTCGGTGT+CGG + chr8_1:28183695-28183714 None:intergenic 50.0%
CAACCAGCACAACTCACACA+TGG + chr8_1:28184041-28184060 None:intergenic 50.0%
ACAATCCCCTGCCAACATGT+CGG - chr8_1:28184731-28184750 Msa1188130:intron 50.0%
TTTGACCGACATGTTGGCAG+GGG + chr8_1:28184739-28184758 None:intergenic 50.0%
CTTACTGGATACTTGGGTGG+GGG + chr8_1:28184922-28184941 None:intergenic 50.0%
GCTTACTGGATACTTGGGTG+GGG + chr8_1:28184923-28184942 None:intergenic 50.0%
GTGCTTACTGGATACTTGGG+TGG + chr8_1:28184925-28184944 None:intergenic 50.0%
TTATGCACTCGGCACATTGG+TGG + chr8_1:28185365-28185384 None:intergenic 50.0%
CCGCATACAGGCCAAATTCA+TGG - chr8_1:28185401-28185420 Msa1188130:intron 50.0%
AACTCAAGAAGAGGCAGCAG+TGG - chr8_1:28185547-28185566 Msa1188130:intron 50.0%
GGCAGCAGTGGCTTATGATA+TGG - chr8_1:28185559-28185578 Msa1188130:intron 50.0%
! CCCTGATTCCGAAGAAGCAT+TGG - chr8_1:28185718-28185737 Msa1188130:intron 50.0%
! GCGCATTCATGACTAGTTGG+AGG + chr8_1:28185827-28185846 None:intergenic 50.0%
AACACGGAAGAACCTTGTGG+TGG - chr8_1:28186025-28186044 Msa1188130:intron 50.0%
CACTTACGCGAATCCGACAC+TGG - chr8_1:28181469-28181488 Msa1188130:CDS 55.0%
CTAAATACCGTGGGGTTGCC+AGG - chr8_1:28182784-28182803 Msa1188130:intron 55.0%
CATCTAACCTGGCAACCCCA+CGG + chr8_1:28182794-28182813 None:intergenic 55.0%
GGCATCACCATAATGGTCGG+TGG - chr8_1:28183373-28183392 Msa1188130:intron 55.0%
GAGCTTCCCACCGACCATTA+TGG + chr8_1:28183383-28183402 None:intergenic 55.0%
GCTCGCATTGGAAGAGTTCG+TGG - chr8_1:28183399-28183418 Msa1188130:intron 55.0%
! CTCTAGGCCTTTGTGGACTG+TGG + chr8_1:28183650-28183669 None:intergenic 55.0%
CACCGACACCGAACAAGACA+CGG - chr8_1:28183690-28183709 Msa1188130:CDS 55.0%
GCTCCATGTGTGAGTTGTGC+TGG - chr8_1:28184035-28184054 Msa1188130:intron 55.0%
ACGGAAGAACCTTGTGGTGG+TGG - chr8_1:28186028-28186047 Msa1188130:CDS 55.0%
TCTTTGCGGCGGCAAAGCAG+TGG - chr8_1:28182744-28182763 Msa1188130:intron 60.0%
!! GAACCTTGTGGTGGTGGTCG+TGG - chr8_1:28186034-28186053 Msa1188130:CDS 60.0%
TCACCACGACCACCACCACA+AGG + chr8_1:28186040-28186059 None:intergenic 60.0%
GGTCGGTGGGAAGCTCGCAT+TGG - chr8_1:28183387-28183406 Msa1188130:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 28180882 28186222 28180882 ID=Msa1188130;Name=Msa1188130
chr8_1 mRNA 28180882 28186222 28180882 ID=Msa1188130-mRNA-1;Parent=Msa1188130;Name=Msa1188130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.2|0|1|1|1|6|0|415
chr8_1 exon 28186026 28186222 28186026 ID=Msa1188130-mRNA-1:exon:9914;Parent=Msa1188130-mRNA-1
chr8_1 exon 28185815 28185897 28185815 ID=Msa1188130-mRNA-1:exon:9913;Parent=Msa1188130-mRNA-1
chr8_1 exon 28185055 28185143 28185055 ID=Msa1188130-mRNA-1:exon:9912;Parent=Msa1188130-mRNA-1
chr8_1 exon 28184299 28184423 28184299 ID=Msa1188130-mRNA-1:exon:9911;Parent=Msa1188130-mRNA-1
chr8_1 exon 28183654 28183730 28183654 ID=Msa1188130-mRNA-1:exon:9910;Parent=Msa1188130-mRNA-1
chr8_1 exon 28180882 28181558 28180882 ID=Msa1188130-mRNA-1:exon:9909;Parent=Msa1188130-mRNA-1
chr8_1 CDS 28186026 28186222 28186026 ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1
chr8_1 CDS 28185815 28185897 28185815 ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1
chr8_1 CDS 28185055 28185143 28185055 ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1
chr8_1 CDS 28184299 28184423 28184299 ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1
chr8_1 CDS 28183654 28183730 28183654 ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1
chr8_1 CDS 28180882 28181558 28180882 ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1
Gene Sequence

>Msa1188130

ATGAAGAGGTCTCCACCATCTTCAAGTTCATCATCTTCATCTTCTATTGGATTTGAGAATCCAATTCAATCAGTGAAAAAAAAGGGTGCTAAGAATCCAAAAAAAAATCTCAATGTCAAGTCACAGAATTTAAAGCAGAAGAAAAACCAAACAAATGGTGGAAGTAGAAGAAGCTCTATTTACAGAGGAGTTACAAGACATAGGTGGACTGGAAGATTTGAAGCTCATCTATGGGATAAGACTTCTTGGAACAAGATTCAGAACAAGAAGGGAAAACAAGGTGCTTATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCACTCAAGTATTGGGGGAACGATGCAACCTTGAATTTTCCGATAGAAACTTATGCAAAAGAGTTTGAGGAAATGGACAAAGCCTCAAAAGAAGAGTATTTGAACTCTTTGCGGCGGCAAAGCAGTGGTTTTTCTAGAGGACTTTCTAAATACCGTGGGGTTGCCAGGCATCACCATAATGGTCGGTGGGAAGCTCGCATTGGAAGAGTTCGTGGTAACAAATACCTCTATTTGGGCACATACAAAACTCAAGAAGAGGCAGCAGTGGCTTATGATATGGCAGCAATAAAGCACAGAGGAATCAATGCCGTGACCAATTTTGACATAAGCAACTACATGGACAAATTGAAGGTGGAGAAAAATGATGAAACAGAACAAACAAAACCACAATCAAACACAGAAATTGTTGCTAATTCCCCTGATTCCGAAGAAGCATTGGAAGAACAAACAACAACTACCCCGCCTCCACAAGAAAATCAACTACAAATAGAACCTTCGCAGCAACAATTTCAACAACATGTTCCTCCAACTAGTCATGAATGCGCAATAGTTAATATTATGGATCATTGTTTTGACCAAGATTATCCATGGAGCTTCATGTATAATGGATTGTCAGAGTTTCAAGACACAGGTTCGACTATGAGTAAGTGTGGTGATGATGATTTAATGAATATATTTGATGGATCAAGCTTTGATGATAACATTGAATTTGAACTTATGTTCAACACGGAAGAACCTTGTGGTGGTGGTCGTGGTGAAAGTGATATCAATATCGGTGAAGTTTTGGAGGGTATTAATTTATTAAATCAAGATGCCGAAAATATGGTTGTGGATGAGAATAGTAACAAGGAGAAGGATTTATTATCCTTAGATTCTTCTTCTTCTTCACCGTCATCTTCAACCACTACAGTTTCTTTGTAA
Protein sequence

>Msa1188130

MKRSPPSSSSSSSSSIGFENPIQSVKKKGAKNPKKNLNVKSQNLKQKKNQTNGGSRRSSIYRGVTRHRWTGRFEAHLWDKTSWNKIQNKKGKQGAYDTEEAAARTYDLAALKYWGNDATLNFPIETYAKEFEEMDKASKEEYLNSLRRQSSGFSRGLSKYRGVARHHHNGRWEARIGRVRGNKYLYLGTYKTQEEAAVAYDMAAIKHRGINAVTNFDISNYMDKLKVEKNDETEQTKPQSNTEIVANSPDSEEALEEQTTTTPPPQENQLQIEPSQQQFQQHVPPTSHECAIVNIMDHCFDQDYPWSFMYNGLSEFQDTGSTMSKCGDDDLMNIFDGSSFDDNIEFELMFNTEEPCGGGRGESDINIGEVLEGINLLNQDAENMVVDENSNKEKDLLSLDSSSSSPSSSTTTVSL*