Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1188130 | AET02608.2 | 94.545 | 385 | 15 | 3 | 16 | 395 | 14 | 397 | 0.0 | 755 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1188130 | sp|Q6X5Y6|WRI1_ARATH | 55.432 | 359 | 124 | 12 | 21 | 351 | 27 | 377 | 3.52e-98 | 302 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1188130 | G7L700 | 94.545 | 385 | 15 | 3 | 16 | 395 | 14 | 397 | 0.0 | 755 |
Gene ID | Type | Classification |
---|---|---|
Msa1188130 | TF | AP2/ERF-AP2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0092220 | Msa1188130 | 0.801967 | 7.011761e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1188130 | MtrunA17_Chr8g0355191 | 94.545 | 385 | 15 | 3 | 16 | 395 | 14 | 397 | 0.0 | 755 |
Msa1188130 | MtrunA17_Chr8g0355181 | 72.277 | 404 | 92 | 10 | 1 | 401 | 1 | 387 | 0.0 | 521 |
Msa1188130 | MtrunA17_Chr4g0073521 | 76.023 | 171 | 41 | 0 | 56 | 226 | 46 | 216 | 1.01e-95 | 291 |
Msa1188130 | MtrunA17_Chr7g0216601 | 62.555 | 227 | 68 | 3 | 48 | 271 | 56 | 268 | 7.20e-92 | 282 |
Msa1188130 | MtrunA17_Chr4g0002011 | 59.592 | 245 | 68 | 5 | 52 | 265 | 31 | 275 | 1.10e-86 | 266 |
Msa1188130 | MtrunA17_Chr6g0452911 | 69.318 | 176 | 44 | 1 | 61 | 226 | 65 | 240 | 1.06e-83 | 261 |
Msa1188130 | MtrunA17_Chr8g0362541 | 66.832 | 202 | 52 | 2 | 56 | 243 | 68 | 268 | 1.61e-80 | 254 |
Msa1188130 | MtrunA17_Chr5g0400871 | 65.934 | 182 | 57 | 2 | 43 | 221 | 237 | 416 | 9.25e-78 | 250 |
Msa1188130 | MtrunA17_Chr2g0328971 | 54.661 | 236 | 93 | 4 | 5 | 228 | 105 | 338 | 9.07e-77 | 247 |
Msa1188130 | MtrunA17_Chr4g0072291 | 66.864 | 169 | 53 | 1 | 56 | 221 | 158 | 326 | 1.85e-76 | 246 |
Msa1188130 | MtrunA17_Chr4g0072291 | 43.023 | 86 | 41 | 1 | 153 | 230 | 156 | 241 | 1.26e-12 | 69.3 |
Msa1188130 | MtrunA17_Chr8g0343851 | 55.607 | 214 | 91 | 1 | 56 | 265 | 247 | 460 | 3.21e-76 | 247 |
Msa1188130 | MtrunA17_Chr3g0135161 | 57.080 | 226 | 85 | 4 | 1 | 221 | 256 | 474 | 9.70e-76 | 248 |
Msa1188130 | MtrunA17_Chr1g0152161 | 56.388 | 227 | 85 | 4 | 1 | 221 | 258 | 476 | 1.96e-75 | 247 |
Msa1188130 | MtrunA17_Chr7g0249621 | 66.477 | 176 | 56 | 1 | 56 | 228 | 258 | 433 | 2.79e-75 | 247 |
Msa1188130 | MtrunA17_Chr4g0032631 | 62.921 | 178 | 63 | 1 | 56 | 230 | 162 | 339 | 3.87e-75 | 243 |
Msa1188130 | MtrunA17_Chr4g0054351 | 54.386 | 228 | 92 | 5 | 8 | 230 | 267 | 487 | 3.05e-72 | 239 |
Msa1188130 | MtrunA17_Chr5g0412151 | 67.456 | 169 | 52 | 1 | 56 | 221 | 223 | 391 | 8.36e-67 | 221 |
Msa1188130 | MtrunA17_Chr5g0412151 | 43.023 | 86 | 41 | 1 | 153 | 230 | 221 | 306 | 6.23e-13 | 70.5 |
Msa1188130 | MtrunA17_Chr8g0367311 | 69.531 | 128 | 39 | 0 | 94 | 221 | 22 | 149 | 6.53e-58 | 190 |
Msa1188130 | MtrunA17_Chr2g0305821 | 73.874 | 111 | 29 | 0 | 57 | 167 | 47 | 157 | 2.18e-48 | 162 |
Msa1188130 | MtrunA17_Chr7g0257361 | 53.514 | 185 | 76 | 4 | 4 | 185 | 6 | 183 | 2.32e-47 | 167 |
Msa1188130 | MtrunA17_Chr7g0263581 | 46.875 | 192 | 86 | 4 | 61 | 244 | 140 | 323 | 6.88e-41 | 151 |
Msa1188130 | MtrunA17_Chr5g0401891 | 52.381 | 168 | 72 | 2 | 61 | 228 | 153 | 312 | 2.35e-40 | 150 |
Msa1188130 | MtrunA17_Chr4g0053181 | 52.976 | 168 | 65 | 3 | 61 | 225 | 177 | 333 | 4.97e-40 | 149 |
Msa1188130 | MtrunA17_Chr4g0030191 | 45.408 | 196 | 93 | 3 | 61 | 253 | 132 | 316 | 5.72e-38 | 143 |
Msa1188130 | MtrunA17_Chr2g0305831 | 57.143 | 98 | 38 | 1 | 163 | 260 | 1 | 94 | 4.02e-32 | 121 |
Msa1188130 | MtrunA17_Chr2g0325911 | 45.550 | 191 | 75 | 4 | 39 | 226 | 113 | 277 | 2.21e-30 | 121 |
Msa1188130 | MtrunA17_Chr3g0126151 | 40.984 | 122 | 61 | 2 | 86 | 197 | 18 | 138 | 1.25e-21 | 90.5 |
Msa1188130 | MtrunA17_Chr1g0170761 | 38.411 | 151 | 71 | 5 | 37 | 176 | 106 | 245 | 6.07e-12 | 66.6 |
Msa1188130 | MtrunA17_Chr8g0367321 | 57.447 | 47 | 20 | 0 | 47 | 93 | 145 | 191 | 1.14e-11 | 63.9 |
Msa1188130 | MtrunA17_Chr5g0432821 | 40.777 | 103 | 54 | 3 | 143 | 241 | 103 | 202 | 6.44e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1188130 | AT3G54320.3 | 55.432 | 359 | 124 | 12 | 21 | 351 | 27 | 377 | 3.58e-99 | 302 |
Msa1188130 | AT3G54320.1 | 55.432 | 359 | 124 | 12 | 21 | 351 | 27 | 377 | 5.07e-99 | 302 |
Msa1188130 | AT1G79700.2 | 63.274 | 226 | 71 | 4 | 45 | 260 | 37 | 260 | 2.52e-78 | 245 |
Msa1188130 | AT5G57390.2 | 60.476 | 210 | 75 | 4 | 15 | 221 | 45 | 249 | 3.42e-78 | 249 |
Msa1188130 | AT5G57390.2 | 38.835 | 103 | 47 | 2 | 153 | 247 | 79 | 173 | 8.98e-12 | 67.0 |
Msa1188130 | AT5G57390.1 | 60.476 | 210 | 75 | 4 | 15 | 221 | 163 | 367 | 2.84e-77 | 250 |
Msa1188130 | AT5G57390.1 | 38.835 | 103 | 47 | 2 | 153 | 247 | 197 | 291 | 8.24e-12 | 67.4 |
Msa1188130 | AT1G16060.1 | 69.841 | 189 | 53 | 2 | 45 | 230 | 43 | 230 | 6.60e-76 | 240 |
Msa1188130 | AT1G51190.1 | 64.607 | 178 | 60 | 1 | 56 | 230 | 186 | 363 | 3.80e-75 | 244 |
Msa1188130 | AT1G51190.1 | 40.741 | 108 | 48 | 3 | 147 | 246 | 178 | 277 | 2.47e-12 | 68.9 |
Msa1188130 | AT5G17430.2 | 65.341 | 176 | 58 | 1 | 56 | 228 | 144 | 319 | 1.25e-74 | 242 |
Msa1188130 | AT5G17430.2 | 40.196 | 102 | 45 | 3 | 153 | 246 | 142 | 235 | 4.37e-11 | 65.1 |
Msa1188130 | AT4G37750.1 | 50.813 | 246 | 115 | 3 | 14 | 255 | 239 | 482 | 1.26e-74 | 243 |
Msa1188130 | AT5G17430.1 | 65.341 | 176 | 58 | 1 | 56 | 228 | 206 | 381 | 2.96e-74 | 243 |
Msa1188130 | AT5G17430.1 | 40.196 | 102 | 45 | 3 | 153 | 246 | 204 | 297 | 4.23e-11 | 65.1 |
Msa1188130 | AT3G20840.1 | 63.636 | 176 | 61 | 1 | 56 | 228 | 177 | 352 | 1.37e-73 | 241 |
Msa1188130 | AT3G20840.1 | 38.889 | 108 | 50 | 3 | 147 | 246 | 169 | 268 | 1.28e-11 | 67.0 |
Msa1188130 | AT1G72570.1 | 56.279 | 215 | 82 | 4 | 12 | 221 | 180 | 387 | 1.56e-73 | 236 |
Msa1188130 | AT5G65510.4 | 60.302 | 199 | 76 | 1 | 26 | 221 | 139 | 337 | 4.50e-70 | 228 |
Msa1188130 | AT5G65510.2 | 60.302 | 199 | 76 | 1 | 26 | 221 | 197 | 395 | 7.03e-70 | 229 |
Msa1188130 | AT5G65510.1 | 60.302 | 199 | 76 | 1 | 26 | 221 | 197 | 395 | 7.03e-70 | 229 |
Msa1188130 | AT3G54320.4 | 53.571 | 280 | 104 | 8 | 94 | 351 | 36 | 311 | 2.77e-69 | 223 |
Msa1188130 | AT3G54320.5 | 53.571 | 280 | 104 | 8 | 94 | 351 | 36 | 311 | 2.77e-69 | 223 |
Msa1188130 | AT1G79700.1 | 58.850 | 226 | 71 | 5 | 45 | 260 | 37 | 250 | 7.10e-68 | 218 |
Msa1188130 | AT5G10510.2 | 60.714 | 196 | 76 | 1 | 26 | 221 | 197 | 391 | 1.64e-67 | 224 |
Msa1188130 | AT5G10510.7 | 59.799 | 199 | 76 | 2 | 26 | 221 | 197 | 394 | 2.28e-65 | 218 |
Msa1188130 | AT5G10510.7 | 36.893 | 103 | 49 | 2 | 153 | 247 | 224 | 318 | 1.56e-11 | 66.6 |
Msa1188130 | AT5G10510.5 | 59.799 | 199 | 76 | 2 | 26 | 221 | 197 | 394 | 2.28e-65 | 218 |
Msa1188130 | AT5G10510.5 | 36.893 | 103 | 49 | 2 | 153 | 247 | 224 | 318 | 1.56e-11 | 66.6 |
Msa1188130 | AT5G10510.1 | 59.799 | 199 | 76 | 2 | 26 | 221 | 220 | 417 | 3.05e-65 | 218 |
Msa1188130 | AT5G10510.1 | 36.893 | 103 | 49 | 2 | 153 | 247 | 247 | 341 | 1.38e-11 | 66.6 |
Msa1188130 | AT5G10510.6 | 59.799 | 199 | 76 | 2 | 26 | 221 | 235 | 432 | 3.49e-65 | 219 |
Msa1188130 | AT5G10510.6 | 36.893 | 103 | 49 | 2 | 153 | 247 | 262 | 356 | 1.23e-11 | 67.0 |
Msa1188130 | AT5G10510.4 | 59.799 | 199 | 76 | 2 | 26 | 221 | 235 | 432 | 3.49e-65 | 219 |
Msa1188130 | AT5G10510.4 | 36.893 | 103 | 49 | 2 | 153 | 247 | 262 | 356 | 1.23e-11 | 67.0 |
Msa1188130 | AT5G65510.3 | 58.333 | 168 | 67 | 1 | 26 | 190 | 139 | 306 | 3.26e-63 | 206 |
Msa1188130 | AT5G65510.3 | 43.023 | 86 | 40 | 2 | 158 | 235 | 172 | 256 | 6.68e-12 | 66.6 |
Msa1188130 | AT5G10510.3 | 53.881 | 219 | 77 | 2 | 26 | 221 | 235 | 452 | 4.98e-61 | 208 |
Msa1188130 | AT1G79700.3 | 63.218 | 174 | 55 | 3 | 94 | 260 | 13 | 184 | 1.84e-54 | 181 |
Msa1188130 | AT1G79700.4 | 63.218 | 174 | 55 | 3 | 94 | 260 | 7 | 178 | 1.89e-54 | 181 |
Msa1188130 | AT1G16060.3 | 74.453 | 137 | 34 | 1 | 94 | 230 | 25 | 160 | 7.53e-52 | 175 |
Msa1188130 | AT2G41710.1 | 41.897 | 253 | 134 | 4 | 23 | 272 | 34 | 276 | 9.26e-46 | 163 |
Msa1188130 | AT2G41710.4 | 41.897 | 253 | 134 | 4 | 23 | 272 | 34 | 276 | 9.65e-46 | 164 |
Msa1188130 | AT3G54320.2 | 49.167 | 240 | 96 | 8 | 134 | 351 | 1 | 236 | 3.98e-45 | 158 |
Msa1188130 | AT2G41710.2 | 41.085 | 258 | 134 | 5 | 23 | 272 | 34 | 281 | 2.28e-43 | 157 |
Msa1188130 | AT4G36920.1 | 52.047 | 171 | 68 | 3 | 61 | 228 | 132 | 291 | 1.40e-40 | 149 |
Msa1188130 | AT4G36920.2 | 52.047 | 171 | 68 | 3 | 61 | 228 | 132 | 291 | 1.40e-40 | 149 |
Msa1188130 | AT1G16060.2 | 78.351 | 97 | 20 | 1 | 134 | 230 | 1 | 96 | 2.03e-40 | 143 |
Msa1188130 | AT1G16060.4 | 78.351 | 97 | 20 | 1 | 134 | 230 | 1 | 96 | 2.03e-40 | 143 |
Msa1188130 | AT1G16060.6 | 78.351 | 97 | 20 | 1 | 134 | 230 | 1 | 96 | 2.03e-40 | 143 |
Msa1188130 | AT1G16060.5 | 78.351 | 97 | 20 | 1 | 134 | 230 | 1 | 96 | 2.03e-40 | 143 |
Msa1188130 | AT5G67180.2 | 47.150 | 193 | 90 | 3 | 61 | 253 | 97 | 277 | 2.24e-40 | 145 |
Msa1188130 | AT5G67180.3 | 52.174 | 161 | 69 | 2 | 61 | 221 | 97 | 249 | 7.82e-40 | 144 |
Msa1188130 | AT2G28550.3 | 50.000 | 174 | 73 | 3 | 61 | 231 | 154 | 316 | 8.09e-40 | 148 |
Msa1188130 | AT5G67180.1 | 47.150 | 193 | 90 | 3 | 61 | 253 | 97 | 277 | 9.32e-40 | 145 |
Msa1188130 | AT2G41710.3 | 36.395 | 294 | 139 | 5 | 23 | 278 | 34 | 317 | 2.78e-39 | 147 |
Msa1188130 | AT2G28550.4 | 50.365 | 137 | 60 | 2 | 61 | 197 | 154 | 282 | 6.73e-31 | 121 |
Msa1188130 | AT2G28550.1 | 45.977 | 174 | 65 | 4 | 61 | 231 | 154 | 301 | 1.02e-30 | 123 |
Msa1188130 | AT5G67180.4 | 50.365 | 137 | 60 | 2 | 61 | 197 | 97 | 225 | 2.05e-30 | 118 |
Msa1188130 | AT2G28550.2 | 50.794 | 126 | 48 | 3 | 61 | 183 | 154 | 268 | 5.46e-25 | 103 |
Msa1188130 | AT2G28550.6 | 50.794 | 126 | 48 | 3 | 61 | 183 | 154 | 268 | 5.46e-25 | 103 |
Msa1188130 | AT1G16060.7 | 72.973 | 74 | 19 | 1 | 157 | 230 | 2 | 74 | 1.68e-23 | 97.4 |
Msa1188130 | AT2G28550.5 | 46.377 | 138 | 58 | 2 | 94 | 231 | 14 | 135 | 2.39e-23 | 99.4 |
Msa1188130 | AT2G39250.2 | 43.443 | 122 | 62 | 1 | 40 | 161 | 88 | 202 | 2.36e-21 | 92.8 |
Msa1188130 | AT2G39250.1 | 43.443 | 122 | 62 | 1 | 40 | 161 | 88 | 202 | 4.51e-21 | 93.6 |
Msa1188130 | AT5G60120.4 | 45.185 | 135 | 66 | 2 | 48 | 182 | 148 | 274 | 7.31e-20 | 91.3 |
Msa1188130 | AT5G60120.3 | 45.185 | 135 | 66 | 2 | 48 | 182 | 148 | 274 | 7.31e-20 | 91.3 |
Msa1188130 | AT5G60120.5 | 45.185 | 135 | 66 | 2 | 48 | 182 | 148 | 274 | 7.31e-20 | 91.3 |
Msa1188130 | AT5G60120.6 | 45.652 | 138 | 61 | 3 | 48 | 182 | 148 | 274 | 8.45e-20 | 91.7 |
Msa1188130 | AT5G60120.1 | 45.652 | 138 | 61 | 3 | 48 | 182 | 148 | 274 | 9.63e-20 | 91.7 |
Msa1188130 | AT5G60120.2 | 45.652 | 138 | 61 | 3 | 48 | 182 | 148 | 274 | 1.17e-19 | 91.3 |
Msa1188130 | AT3G54990.2 | 45.192 | 104 | 50 | 1 | 61 | 164 | 123 | 219 | 2.14e-16 | 79.0 |
Msa1188130 | AT3G54990.1 | 45.192 | 104 | 50 | 1 | 61 | 164 | 123 | 219 | 6.93e-16 | 79.0 |
Msa1188130 | AT4G27950.1 | 39.423 | 104 | 55 | 4 | 159 | 261 | 117 | 213 | 4.08e-11 | 64.3 |
Find 78 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTAACAAATACCTCTATT+TGG | 0.186609 | 8_1:-28183663 | Msa1188130:CDS |
TCCAATGCTTCTTCGGAATC+AGG | 0.245762 | 8_1:+28181363 | None:intergenic |
TCATCATCTTCATCTTCTAT+TGG | 0.261290 | 8_1:-28186173 | Msa1188130:CDS |
GAAGATTTGAAGCTCATCTA+TGG | 0.274505 | 8_1:-28185861 | Msa1188130:CDS |
CCATGGAGCTTCATGTATAA+TGG | 0.274823 | 8_1:-28181195 | Msa1188130:CDS |
AAATCAAGATGCCGAAAATA+TGG | 0.299269 | 8_1:-28180977 | Msa1188130:CDS |
ATGCGCAATAGTTAATATTA+TGG | 0.304733 | 8_1:-28181241 | Msa1188130:CDS |
TATCAATATCGGTGAAGTTT+TGG | 0.306250 | 8_1:-28181016 | Msa1188130:CDS |
TTCTACTTCCACCATTTGTT+TGG | 0.311885 | 8_1:+28186054 | None:intergenic |
ATCTATGGGATAAGACTTCT+TGG | 0.321379 | 8_1:-28185846 | Msa1188130:CDS |
TGCAAAAGAGTTTGAGGAAA+TGG | 0.326215 | 8_1:-28184390 | Msa1188130:CDS |
GTAGTTGCTTATGTCAAAAT+TGG | 0.328027 | 8_1:+28181467 | None:intergenic |
GATTTAATGAATATATTTGA+TGG | 0.346591 | 8_1:-28181120 | Msa1188130:CDS |
TCTTGCAGCACTCAAGTATT+GGG | 0.356416 | 8_1:-28185081 | Msa1188130:CDS |
TTGTTCTTCCAATGCTTCTT+CGG | 0.362093 | 8_1:+28181356 | None:intergenic |
GAGCTTCCCACCGACCATTA+TGG | 0.381198 | 8_1:+28183702 | None:intergenic |
TTGAATAGGCATCACCATAA+TGG | 0.407675 | 8_1:-28183716 | Msa1188130:intron |
GGTAACAAATACCTCTATTT+GGG | 0.408649 | 8_1:-28183662 | Msa1188130:CDS |
CTAAATACCGTGGGGTTGCC+AGG | 0.413317 | 8_1:-28184298 | Msa1188130:intron |
GGCAGCAGTGGCTTATGATA+TGG | 0.413991 | 8_1:-28181523 | Msa1188130:CDS |
CTTGAGTGCTGCAAGATCAT+AGG | 0.421646 | 8_1:+28185088 | None:intergenic |
ATCTTGCAGCACTCAAGTAT+TGG | 0.430524 | 8_1:-28185082 | Msa1188130:CDS |
AACTTATGCAAAAGAGTTTG+AGG | 0.450069 | 8_1:-28184396 | Msa1188130:CDS |
CCCTGATTCCGAAGAAGCAT+TGG | 0.450167 | 8_1:-28181364 | Msa1188130:CDS |
AAGAGTATTTGAACTCTTTG+CGG | 0.450951 | 8_1:-28184352 | Msa1188130:CDS |
TACTGTATGTGCCCAAATAG+AGG | 0.461718 | 8_1:+28183651 | None:intergenic |
CCAATGCTTCTTCGGAATCA+GGG | 0.466066 | 8_1:+28181364 | None:intergenic |
TGAAGCTCCATGGATAATCT+TGG | 0.475912 | 8_1:+28181205 | None:intergenic |
GGTGAAAGTGATATCAATAT+CGG | 0.479712 | 8_1:-28181027 | Msa1188130:CDS |
CTATTTACAGAGGAGTTACA+AGG | 0.483023 | 8_1:-28186025 | Msa1188130:intron |
ATTGCGCATTCATGACTAGT+TGG | 0.500701 | 8_1:+28181255 | None:intergenic |
AACTCAAGAAGAGGCAGCAG+TGG | 0.504028 | 8_1:-28181535 | Msa1188130:CDS |
CAACTACATGGACAAATTGA+AGG | 0.505278 | 8_1:-28181451 | Msa1188130:CDS |
CAAATTAGACATAGGTGGAC+TGG | 0.506410 | 8_1:-28185883 | Msa1188130:intron |
GAACCTTGTGGTGGTGGTCG+TGG | 0.508446 | 8_1:-28181048 | Msa1188130:CDS |
TTTGTATCATTCAAATGAAG+AGG | 0.512964 | 8_1:-28186214 | None:intergenic |
ACAATTTCTGTGTTTGATTG+TGG | 0.530549 | 8_1:+28181396 | None:intergenic |
ACGGAAGAACCTTGTGGTGG+TGG | 0.534175 | 8_1:-28181054 | Msa1188130:CDS |
GAACAAGATTCAGAACAAGA+AGG | 0.536583 | 8_1:-28185824 | Msa1188130:CDS |
TGAGAATAGTAACAAGGAGA+AGG | 0.537399 | 8_1:-28180947 | Msa1188130:CDS |
CCATTATACATGAAGCTCCA+TGG | 0.539343 | 8_1:+28181195 | None:intergenic |
GAGGACTTTCTAAATACCGT+GGG | 0.549435 | 8_1:-28184307 | Msa1188130:CDS |
TATTGAAGAAACTCAAGAAG+AGG | 0.551880 | 8_1:-28181544 | Msa1188130:intron |
TGTTGAAATTGTTGCTGCGA+AGG | 0.552598 | 8_1:+28181288 | None:intergenic |
GGTCGGTGGGAAGCTCGCAT+TGG | 0.557991 | 8_1:-28183695 | Msa1188130:CDS |
TTGATCAAATTAGACATAGG+TGG | 0.563648 | 8_1:-28185888 | Msa1188130:intron |
TTGTCAGAGTTTCAAGACAC+AGG | 0.563746 | 8_1:-28181171 | Msa1188130:CDS |
GCTCGCATTGGAAGAGTTCG+TGG | 0.568186 | 8_1:-28183683 | Msa1188130:CDS |
GCGCATTCATGACTAGTTGG+AGG | 0.568657 | 8_1:+28181258 | None:intergenic |
GATGATGAACTTGAAGATGG+TGG | 0.569284 | 8_1:+28186188 | None:intergenic |
AAGATTTGAAGCTCATCTAT+GGG | 0.572069 | 8_1:-28185860 | Msa1188130:CDS |
CAGAACAAGAAGGGAAAACA+AGG | 0.573233 | 8_1:-28185814 | Msa1188130:intron |
AACAAGATTCAGAACAAGAA+GGG | 0.581787 | 8_1:-28185823 | Msa1188130:CDS |
AGATGCCGAAAATATGGTTG+TGG | 0.585464 | 8_1:-28180971 | Msa1188130:CDS |
CAATGCTTCTTCGGAATCAG+GGG | 0.588294 | 8_1:+28181365 | None:intergenic |
GAAGATGATGAACTTGAAGA+TGG | 0.588912 | 8_1:+28186185 | None:intergenic |
GGCATCACCATAATGGTCGG+TGG | 0.592230 | 8_1:-28183709 | Msa1188130:CDS |
GCTTATGTCAAAATTGGTCA+CGG | 0.594258 | 8_1:+28181473 | None:intergenic |
CTTGCAGCACTCAAGTATTG+GGG | 0.601900 | 8_1:-28185080 | Msa1188130:CDS |
TCTTTGCGGCGGCAAAGCAG+TGG | 0.603859 | 8_1:-28184338 | Msa1188130:CDS |
GCATCACCATAATGGTCGGT+GGG | 0.611752 | 8_1:-28183708 | Msa1188130:CDS |
AGAGGACTTTCTAAATACCG+TGG | 0.626454 | 8_1:-28184308 | Msa1188130:CDS |
CATCTAACCTGGCAACCCCA+CGG | 0.646913 | 8_1:+28184291 | None:intergenic |
AGAAGAAGCTCTATTTACAG+AGG | 0.648550 | 8_1:-28186035 | Msa1188130:CDS |
TCACCACGACCACCACCACA+AGG | 0.649319 | 8_1:+28181045 | None:intergenic |
TTGCAGCACTCAAGTATTGG+GGG | 0.650524 | 8_1:-28185079 | Msa1188130:CDS |
TGTGGATGAGAATAGTAACA+AGG | 0.651136 | 8_1:-28180953 | Msa1188130:CDS |
AGTATTTGAACTCTTTGCGG+CGG | 0.655198 | 8_1:-28184349 | Msa1188130:CDS |
CTACATGGACAAATTGAAGG+TGG | 0.658749 | 8_1:-28181448 | Msa1188130:CDS |
GGTTCGACTATGAGTAAGTG+TGG | 0.660392 | 8_1:-28181150 | Msa1188130:CDS |
ATAGGCATCACCATAATGGT+CGG | 0.667124 | 8_1:-28183712 | Msa1188130:intron |
TAGTTACAAAGAAACTGTAG+TGG | 0.679816 | 8_1:+28180879 | None:intergenic |
ATTTGAACTTATGTTCAACA+CGG | 0.681855 | 8_1:-28181073 | Msa1188130:CDS |
ACTGTAGTGGTTGAAGATGA+CGG | 0.701675 | 8_1:+28180892 | None:intergenic |
AACACGGAAGAACCTTGTGG+TGG | 0.703150 | 8_1:-28181057 | Msa1188130:CDS |
AGGACTTTCTAAATACCGTG+GGG | 0.721413 | 8_1:-28184306 | Msa1188130:CDS |
TTCAACACGGAAGAACCTTG+TGG | 0.731490 | 8_1:-28181060 | Msa1188130:CDS |
ATGGCAGCAATAAAGCACAG+AGG | 0.789593 | 8_1:-28181504 | Msa1188130:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATAAATTATTATTGATTTG+TGG | - | chr8_1:28181896-28181915 | Msa1188130:intron | 10.0% |
!!! | ATTATTTAGTTTTTCTAAAT+TGG | - | chr8_1:28182055-28182074 | Msa1188130:intron | 10.0% |
!! | ATATGTTAAATTAAATTGTA+CGG | + | chr8_1:28182604-28182623 | None:intergenic | 10.0% |
!! | ATAATATTATTAAAGTAATG+TGG | + | chr8_1:28183256-28183275 | None:intergenic | 10.0% |
!!! | AAACAATTTTTGATAAAAAA+TGG | + | chr8_1:28183481-28183500 | None:intergenic | 10.0% |
!! | TATATAATTAATATGAAACA+CGG | + | chr8_1:28183827-28183846 | None:intergenic | 10.0% |
!!! | AAGATTTTTTTTATTAAAAG+TGG | + | chr8_1:28184564-28184583 | None:intergenic | 10.0% |
!!! | ACATATTTTCATTTTTATTA+TGG | + | chr8_1:28184795-28184814 | None:intergenic | 10.0% |
!! | TAAAAAGTTAACTAAAAAAA+TGG | - | chr8_1:28184858-28184877 | Msa1188130:intron | 10.0% |
!!! | TTTTGAAGTTAATTTAAAAT+TGG | + | chr8_1:28185071-28185090 | None:intergenic | 10.0% |
!!! | GAAAAACTAAATAATTTTAC+CGG | + | chr8_1:28182050-28182069 | None:intergenic | 15.0% |
!!! | TATTTTTTAGAGATTGATAT+TGG | - | chr8_1:28182330-28182349 | Msa1188130:intron | 15.0% |
!!! | ATTTTCTGTGTTAATTTTAA+AGG | - | chr8_1:28182577-28182596 | Msa1188130:intron | 15.0% |
!!! | TTTTCTGTGTTAATTTTAAA+GGG | - | chr8_1:28182578-28182597 | Msa1188130:intron | 15.0% |
!!! | ATTAATCTTACTTTTTGAAT+AGG | - | chr8_1:28183352-28183371 | Msa1188130:intron | 15.0% |
!! | ACATAATTTAGTGTAATTAT+AGG | - | chr8_1:28183743-28183762 | Msa1188130:intron | 15.0% |
!!! | ATTAGTATAATTTTACACTA+AGG | + | chr8_1:28184216-28184235 | None:intergenic | 15.0% |
!!! | TTTTTTTTGTCTTCTTTTTT+TGG | - | chr8_1:28184363-28184382 | Msa1188130:CDS | 15.0% |
!! | TTTCACTATTATTATATTCT+AGG | - | chr8_1:28184814-28184833 | Msa1188130:intron | 15.0% |
!! | TTGTTTATAGTAATATTGTA+CGG | + | chr8_1:28185095-28185114 | None:intergenic | 15.0% |
!! | GATTTAATGAATATATTTGA+TGG | - | chr8_1:28185962-28185981 | Msa1188130:intron | 15.0% |
!!! | TTTTTTTTCACTGATTGAAT+TGG | + | chr8_1:28180945-28180964 | None:intergenic | 20.0% |
!! | AATTCAATCAGTGAAAAAAA+AGG | - | chr8_1:28180944-28180963 | Msa1188130:CDS | 20.0% |
!! | ATTCAATCAGTGAAAAAAAA+GGG | - | chr8_1:28180945-28180964 | Msa1188130:CDS | 20.0% |
!!! | TTGACATTGAGATTTTTTTT+TGG | + | chr8_1:28180981-28181000 | None:intergenic | 20.0% |
!!! | ACTATGTTTTTTTTAGTGTT+TGG | - | chr8_1:28181298-28181317 | Msa1188130:CDS | 20.0% |
!!! | TTTCAAATTATTTTCCGTAT+CGG | + | chr8_1:28181396-28181415 | None:intergenic | 20.0% |
!! | ATATAATTCAGTGTAATCAT+CGG | - | chr8_1:28181422-28181441 | Msa1188130:CDS | 20.0% |
!!! | TTTTTGGTGTATTTTTTTTC+TGG | - | chr8_1:28181535-28181554 | Msa1188130:CDS | 20.0% |
!!! | CTGGTGAATTTTTTATTATT+TGG | - | chr8_1:28181554-28181573 | Msa1188130:intron | 20.0% |
!! | AGATTCTGATTAACTTAATT+TGG | - | chr8_1:28181921-28181940 | Msa1188130:intron | 20.0% |
!! | TTTGGTTATTATGTTGATAT+AGG | - | chr8_1:28181939-28181958 | Msa1188130:intron | 20.0% |
!!! | GTCATTTCAAATAATTTTCA+AGG | - | chr8_1:28182170-28182189 | Msa1188130:intron | 20.0% |
!! | TTGTTGAAAATTTCAAACAT+TGG | + | chr8_1:28182227-28182246 | None:intergenic | 20.0% |
!! | TCAACAATAACATTAATACA+TGG | - | chr8_1:28182240-28182259 | Msa1188130:intron | 20.0% |
!! | CTAAAAAATAGTTCAAAGAA+GGG | + | chr8_1:28182320-28182339 | None:intergenic | 20.0% |
!! | TCTAAAAAATAGTTCAAAGA+AGG | + | chr8_1:28182321-28182340 | None:intergenic | 20.0% |
!!! | GAATATTATTGACTATTAGA+CGG | + | chr8_1:28182397-28182416 | None:intergenic | 20.0% |
!! | AATTTATTAGACACAAAAAG+TGG | - | chr8_1:28182424-28182443 | Msa1188130:intron | 20.0% |
!! | ATTTATTAGACACAAAAAGT+GGG | - | chr8_1:28182425-28182444 | Msa1188130:intron | 20.0% |
!! | CTATGGAAAAAAAATTAGTT+AGG | + | chr8_1:28182460-28182479 | None:intergenic | 20.0% |
!! | ATAATATTATGTACATGACT+TGG | - | chr8_1:28183266-28183285 | Msa1188130:intron | 20.0% |
!!! | CAAAAATTGTTTCAAACTTT+TGG | - | chr8_1:28183489-28183508 | Msa1188130:intron | 20.0% |
!! | TACTATCATAGTTTGATATT+GGG | + | chr8_1:28184330-28184349 | None:intergenic | 20.0% |
!! | ACAAAAAAAATATTGTTGAC+AGG | + | chr8_1:28184353-28184372 | None:intergenic | 20.0% |
!! | CATATATTTAACCATGAATT+TGG | + | chr8_1:28185415-28185434 | None:intergenic | 20.0% |
! | TGTTTGATCAAATTAGACAT+AGG | - | chr8_1:28181191-28181210 | Msa1188130:CDS | 25.0% |
! | GATTTGCAAAGAATAAAACA+AGG | + | chr8_1:28181750-28181769 | None:intergenic | 25.0% |
!! | TAATTTTACCGGAAAATTCA+AGG | + | chr8_1:28182039-28182058 | None:intergenic | 25.0% |
!!! | AAATCGAGTCTATTTTGTTT+TGG | - | chr8_1:28182090-28182109 | Msa1188130:intron | 25.0% |
! | ATAACATTAATACATGGACA+TGG | - | chr8_1:28182246-28182265 | Msa1188130:intron | 25.0% |
! | ATAGTCAATAATATTCGTTG+AGG | - | chr8_1:28182401-28182420 | Msa1188130:intron | 25.0% |
! | GAAAAAAAATTAGTTAGGAG+AGG | + | chr8_1:28182455-28182474 | None:intergenic | 25.0% |
! | AATTCAAATTTCTTACCACT+TGG | - | chr8_1:28182508-28182527 | Msa1188130:intron | 25.0% |
! | ATAGATGTATCTATCTTACA+TGG | + | chr8_1:28182557-28182576 | None:intergenic | 25.0% |
! | ATGAATATGTTACTAACTTG+TGG | - | chr8_1:28182645-28182664 | Msa1188130:intron | 25.0% |
! | TACATGTTTGATATCACATT+AGG | - | chr8_1:28182967-28182986 | Msa1188130:intron | 25.0% |
!!! | TGTAGTTTTTTGCAAAATCA+AGG | + | chr8_1:28183016-28183035 | None:intergenic | 25.0% |
! | ATGATTCATGTTTGATATCA+CGG | + | chr8_1:28183085-28183104 | None:intergenic | 25.0% |
!!! | AAAATGGTAATGGTACAAAT+TGG | + | chr8_1:28183125-28183144 | None:intergenic | 25.0% |
!! | TACCATTACCATTTTATCAA+TGG | - | chr8_1:28183130-28183149 | Msa1188130:intron | 25.0% |
! | TTTAGTGTAATTATAGGTGT+TGG | - | chr8_1:28183749-28183768 | Msa1188130:intron | 25.0% |
! | TTCTCATAATTAACGTGAAT+TGG | - | chr8_1:28183993-28184012 | Msa1188130:intron | 25.0% |
! | TCTCATAATTAACGTGAATT+GGG | - | chr8_1:28183994-28184013 | Msa1188130:intron | 25.0% |
!! | TAAATTTTCCTATGTTCCTA+TGG | + | chr8_1:28184138-28184157 | None:intergenic | 25.0% |
! | GTACTATCATAGTTTGATAT+TGG | + | chr8_1:28184331-28184350 | None:intergenic | 25.0% |
!!! | TATTGTATTATTTTGCCATG+TGG | - | chr8_1:28184592-28184611 | Msa1188130:intron | 25.0% |
!!! | TCATGCATTATTTGTTTTGT+TGG | - | chr8_1:28184615-28184634 | Msa1188130:intron | 25.0% |
! | TGCTTATCTTATAGAGTTTA+AGG | + | chr8_1:28184671-28184690 | None:intergenic | 25.0% |
! | TATTATGGTTTCACAAGATT+GGG | + | chr8_1:28184780-28184799 | None:intergenic | 25.0% |
! | TTATTATGGTTTCACAAGAT+TGG | + | chr8_1:28184781-28184800 | None:intergenic | 25.0% |
!!! | ATTTGTAGTTGATTTTCTTG+TGG | + | chr8_1:28185770-28185789 | None:intergenic | 25.0% |
! | ATGCGCAATAGTTAATATTA+TGG | - | chr8_1:28185841-28185860 | Msa1188130:CDS | 25.0% |
! | ATTTGAACTTATGTTCAACA+CGG | - | chr8_1:28186009-28186028 | Msa1188130:intron | 25.0% |
TCATCATCTTCATCTTCTAT+TGG | - | chr8_1:28180909-28180928 | Msa1188130:CDS | 30.0% | |
CAGAAGAAAAACCAAACAAA+TGG | - | chr8_1:28181017-28181036 | Msa1188130:CDS | 30.0% | |
AAGAAAAACCAAACAAATGG+TGG | - | chr8_1:28181020-28181039 | Msa1188130:CDS | 30.0% | |
! | ACCCTTTTGAATTTTGTTGA+TGG | - | chr8_1:28181136-28181155 | Msa1188130:CDS | 30.0% |
CCCATCAACAAAATTCAAAA+GGG | + | chr8_1:28181140-28181159 | None:intergenic | 30.0% | |
! | CCCTTTTGAATTTTGTTGAT+GGG | - | chr8_1:28181137-28181156 | Msa1188130:CDS | 30.0% |
ACCCATCAACAAAATTCAAA+AGG | + | chr8_1:28181141-28181160 | None:intergenic | 30.0% | |
TTGATCAAATTAGACATAGG+TGG | - | chr8_1:28181194-28181213 | Msa1188130:CDS | 30.0% | |
! | AAGATTTGAAGCTCATCTAT+GGG | - | chr8_1:28181222-28181241 | Msa1188130:CDS | 30.0% |
AACAAGATTCAGAACAAGAA+GGG | - | chr8_1:28181259-28181278 | Msa1188130:CDS | 30.0% | |
AGACAAGTTAGAGAAAATCA+AGG | - | chr8_1:28181633-28181652 | Msa1188130:intron | 30.0% | |
GTTAAATTAGTCCTTGATCA+TGG | + | chr8_1:28182205-28182224 | None:intergenic | 30.0% | |
ATTCCTTAAATAGACGATCA+GGG | + | chr8_1:28182491-28182510 | None:intergenic | 30.0% | |
AATTCCTTAAATAGACGATC+AGG | + | chr8_1:28182492-28182511 | None:intergenic | 30.0% | |
GACATGTACCAATGATATAT+TGG | + | chr8_1:28182535-28182554 | None:intergenic | 30.0% | |
AACTTATGCAAAAGAGTTTG+AGG | - | chr8_1:28182686-28182705 | Msa1188130:intron | 30.0% | |
! | GTTCAAATACTCTTCTTTTG+AGG | + | chr8_1:28182724-28182743 | None:intergenic | 30.0% |
!! | AAGAGTATTTGAACTCTTTG+CGG | - | chr8_1:28182730-28182749 | Msa1188130:intron | 30.0% |
AAATTTGAATGCATCTAACC+TGG | + | chr8_1:28182805-28182824 | None:intergenic | 30.0% | |
!!! | TCTAGCATATTTTGAAACCA+TGG | - | chr8_1:28182863-28182882 | Msa1188130:intron | 30.0% |
TTTCATACATGTGTGATTAG+AGG | - | chr8_1:28182939-28182958 | Msa1188130:intron | 30.0% | |
GACCATTGATAAAATGGTAA+TGG | + | chr8_1:28183135-28183154 | None:intergenic | 30.0% | |
AACTTGGACCATTGATAAAA+TGG | + | chr8_1:28183141-28183160 | None:intergenic | 30.0% | |
ACTTGACTATGGTTATAACT+TGG | + | chr8_1:28183157-28183176 | None:intergenic | 30.0% | |
AACAACAAACAACTTGACTA+TGG | + | chr8_1:28183168-28183187 | None:intergenic | 30.0% | |
TGGTAACAAATACCTCTATT+TGG | - | chr8_1:28183419-28183438 | Msa1188130:intron | 30.0% | |
GGTAACAAATACCTCTATTT+GGG | - | chr8_1:28183420-28183439 | Msa1188130:intron | 30.0% | |
! | AATTGTACTTTTCCTGCTTA+TGG | + | chr8_1:28183592-28183611 | None:intergenic | 30.0% |
TACCATTCTCTAATTTCTCT+AGG | + | chr8_1:28183666-28183685 | None:intergenic | 30.0% | |
GTAAAAGACAAAAATGCACT+TGG | - | chr8_1:28183901-28183920 | Msa1188130:intron | 30.0% | |
! | CAGTTTTACAAGCTGTAATT+TGG | + | chr8_1:28183970-28183989 | None:intergenic | 30.0% |
TATATTTCTTCTGCAACAAG+AGG | + | chr8_1:28184091-28184110 | None:intergenic | 30.0% | |
TATACTACTGCATCAATTTC+TGG | - | chr8_1:28184107-28184126 | Msa1188130:intron | 30.0% | |
GTCAAATGTTAGATTGAACT+TGG | + | chr8_1:28184641-28184660 | None:intergenic | 30.0% | |
ACTCTATAAGATAAGCATGT+TGG | - | chr8_1:28184674-28184693 | Msa1188130:intron | 30.0% | |
TATAAGATAAGCATGTTGGA+GGG | - | chr8_1:28184678-28184697 | Msa1188130:intron | 30.0% | |
! | ATAATTTTTGACCGACATGT+TGG | + | chr8_1:28184745-28184764 | None:intergenic | 30.0% |
ATATTTGAAGAATCAGTGTC+TGG | + | chr8_1:28184960-28184979 | None:intergenic | 30.0% | |
AATATACAAATGTGTCACCA+AGG | - | chr8_1:28185178-28185197 | Msa1188130:intron | 30.0% | |
ATCTTATGCATTTATGCACT+CGG | + | chr8_1:28185376-28185395 | None:intergenic | 30.0% | |
TATTGAAGAAACTCAAGAAG+AGG | - | chr8_1:28185538-28185557 | Msa1188130:intron | 30.0% | |
GTAGTTGCTTATGTCAAAAT+TGG | + | chr8_1:28185618-28185637 | None:intergenic | 30.0% | |
! | TTTTGACATAAGCAACTACA+TGG | - | chr8_1:28185619-28185638 | Msa1188130:intron | 30.0% |
ACAATTTCTGTGTTTGATTG+TGG | + | chr8_1:28185689-28185708 | None:intergenic | 30.0% | |
GGTGAAAGTGATATCAATAT+CGG | - | chr8_1:28186055-28186074 | Msa1188130:CDS | 30.0% | |
! | TATCAATATCGGTGAAGTTT+TGG | - | chr8_1:28186066-28186085 | Msa1188130:CDS | 30.0% |
AAATCAAGATGCCGAAAATA+TGG | - | chr8_1:28186105-28186124 | Msa1188130:CDS | 30.0% | |
TGAAGAAGAAGAAGAATCTA+AGG | + | chr8_1:28186170-28186189 | None:intergenic | 30.0% | |
GAAGATGATGAACTTGAAGA+TGG | + | chr8_1:28180900-28180919 | None:intergenic | 35.0% | |
TTCTACTTCCACCATTTGTT+TGG | + | chr8_1:28181031-28181050 | None:intergenic | 35.0% | |
AGAAGAAGCTCTATTTACAG+AGG | - | chr8_1:28181047-28181066 | Msa1188130:CDS | 35.0% | |
CTATTTACAGAGGAGTTACA+AGG | - | chr8_1:28181057-28181076 | Msa1188130:CDS | 35.0% | |
! | GAAGATTTGAAGCTCATCTA+TGG | - | chr8_1:28181221-28181240 | Msa1188130:CDS | 35.0% |
ATCTATGGGATAAGACTTCT+TGG | - | chr8_1:28181236-28181255 | Msa1188130:CDS | 35.0% | |
GAACAAGATTCAGAACAAGA+AGG | - | chr8_1:28181258-28181277 | Msa1188130:CDS | 35.0% | |
TGATGAGTTTCTATGAAGCA+CGG | - | chr8_1:28181329-28181348 | Msa1188130:CDS | 35.0% | |
!!! | GCTTCATAGATGGGTTTTTT+TGG | - | chr8_1:28181519-28181538 | Msa1188130:CDS | 35.0% |
! | TGCGGATGGTTTAGTTTATT+TGG | - | chr8_1:28181797-28181816 | Msa1188130:intron | 35.0% |
! | GCGGATGGTTTAGTTTATTT+GGG | - | chr8_1:28181798-28181817 | Msa1188130:intron | 35.0% |
!!! | GGTTATTTTAGCCATGATCA+AGG | - | chr8_1:28182191-28182210 | Msa1188130:intron | 35.0% |
! | ATAGTTCAAAGAAGGGTATG+TGG | + | chr8_1:28182313-28182332 | None:intergenic | 35.0% |
TTCCTTAAATAGACGATCAG+GGG | + | chr8_1:28182490-28182509 | None:intergenic | 35.0% | |
CAATGATATATTGGTCCAAG+TGG | + | chr8_1:28182526-28182545 | None:intergenic | 35.0% | |
CACTTGGACCAATATATCAT+TGG | - | chr8_1:28182524-28182543 | Msa1188130:intron | 35.0% | |
TGCAAAAGAGTTTGAGGAAA+TGG | - | chr8_1:28182692-28182711 | Msa1188130:intron | 35.0% | |
! | TGACACTTTTGCAAGTATCT+GGG | - | chr8_1:28183194-28183213 | Msa1188130:intron | 35.0% |
TTGAATAGGCATCACCATAA+TGG | - | chr8_1:28183366-28183385 | Msa1188130:intron | 35.0% | |
CGTGACATCTTTATTAAGCA+TGG | + | chr8_1:28183548-28183567 | None:intergenic | 35.0% | |
TGCTTAATAAAGATGTCACG+TGG | - | chr8_1:28183548-28183567 | Msa1188130:intron | 35.0% | |
ACATTTGACAATCCATAAGC+AGG | - | chr8_1:28183577-28183596 | Msa1188130:intron | 35.0% | |
AGGAAATTAGTACTTTGCAG+AGG | + | chr8_1:28183618-28183637 | None:intergenic | 35.0% | |
!! | GTAATTATAGGTGTTGGTGT+CGG | - | chr8_1:28183755-28183774 | Msa1188130:intron | 35.0% |
GATTAGACATGTTTCAGTGT+CGG | + | chr8_1:28183794-28183813 | None:intergenic | 35.0% | |
ACACTGAAACATGTCTAATC+TGG | - | chr8_1:28183794-28183813 | Msa1188130:intron | 35.0% | |
! | TGGGTTAAAGCTGGAATTTT+AGG | - | chr8_1:28184013-28184032 | Msa1188130:intron | 35.0% |
!! | TAGATTTTAACCTTTGCAGC+TGG | + | chr8_1:28184167-28184186 | None:intergenic | 35.0% |
CAATTTCCAGTATTGTTGAC+AGG | + | chr8_1:28184398-28184417 | None:intergenic | 35.0% | |
ACAAATAATGCATGACCACA+TGG | + | chr8_1:28184610-28184629 | None:intergenic | 35.0% | |
CTATAAGATAAGCATGTTGG+AGG | - | chr8_1:28184677-28184696 | Msa1188130:intron | 35.0% | |
ATTCCAAATCCATCTAACCT+TGG | + | chr8_1:28185198-28185217 | None:intergenic | 35.0% | |
AGACATGAATCGAGATTAGA+TGG | - | chr8_1:28185262-28185281 | Msa1188130:intron | 35.0% | |
!! | ATAAGATTTTGACCGCATAC+AGG | - | chr8_1:28185389-28185408 | Msa1188130:intron | 35.0% |
GCTTATGTCAAAATTGGTCA+CGG | + | chr8_1:28185612-28185631 | None:intergenic | 35.0% | |
CAACTACATGGACAAATTGA+AGG | - | chr8_1:28185631-28185650 | Msa1188130:intron | 35.0% | |
TTGTTCTTCCAATGCTTCTT+CGG | + | chr8_1:28185729-28185748 | None:intergenic | 35.0% | |
!! | TGTAGTTGATTTTCTTGTGG+AGG | + | chr8_1:28185767-28185786 | None:intergenic | 35.0% |
!! | GTTTTGACCAAGATTATCCA+TGG | - | chr8_1:28185870-28185889 | Msa1188130:CDS | 35.0% |
!!! | AATATCGGTGAAGTTTTGGA+GGG | - | chr8_1:28186070-28186089 | Msa1188130:CDS | 35.0% |
! | CTCATCCACAACCATATTTT+CGG | + | chr8_1:28186119-28186138 | None:intergenic | 35.0% |
TGTGGATGAGAATAGTAACA+AGG | - | chr8_1:28186129-28186148 | Msa1188130:CDS | 35.0% | |
TGAGAATAGTAACAAGGAGA+AGG | - | chr8_1:28186135-28186154 | Msa1188130:CDS | 35.0% | |
GATGATGAACTTGAAGATGG+TGG | + | chr8_1:28180897-28180916 | None:intergenic | 40.0% | |
CAAATTAGACATAGGTGGAC+TGG | - | chr8_1:28181199-28181218 | Msa1188130:CDS | 40.0% | |
CAGAACAAGAAGGGAAAACA+AGG | - | chr8_1:28181268-28181287 | Msa1188130:CDS | 40.0% | |
AGTGTCTCTGCTTCATAGAT+GGG | - | chr8_1:28181510-28181529 | Msa1188130:CDS | 40.0% | |
ATCTTGCAGCACTCAAGTAT+TGG | - | chr8_1:28182000-28182019 | Msa1188130:intron | 40.0% | |
TCTTGCAGCACTCAAGTATT+GGG | - | chr8_1:28182001-28182020 | Msa1188130:intron | 40.0% | |
! | CGATGCAACCTTGAATTTTC+CGG | - | chr8_1:28182028-28182047 | Msa1188130:intron | 40.0% |
CGATCAGGGGTTTAATTCTA+TGG | + | chr8_1:28182477-28182496 | None:intergenic | 40.0% | |
AACCCCTGATCGTCTATTTA+AGG | - | chr8_1:28182485-28182504 | Msa1188130:intron | 40.0% | |
AGTATTTGAACTCTTTGCGG+CGG | - | chr8_1:28182733-28182752 | Msa1188130:intron | 40.0% | |
! | CAAAGCAGTGGTTTTTCTAG+AGG | - | chr8_1:28182756-28182775 | Msa1188130:intron | 40.0% |
AGAGGACTTTCTAAATACCG+TGG | - | chr8_1:28182774-28182793 | Msa1188130:intron | 40.0% | |
GAGGACTTTCTAAATACCGT+GGG | - | chr8_1:28182775-28182794 | Msa1188130:intron | 40.0% | |
AGGACTTTCTAAATACCGTG+GGG | - | chr8_1:28182776-28182795 | Msa1188130:intron | 40.0% | |
! | GTGACACTTTTGCAAGTATC+TGG | - | chr8_1:28183193-28183212 | Msa1188130:intron | 40.0% |
ATAGGCATCACCATAATGGT+CGG | - | chr8_1:28183370-28183389 | Msa1188130:intron | 40.0% | |
TACTGTATGTGCCCAAATAG+AGG | + | chr8_1:28183434-28183453 | None:intergenic | 40.0% | |
CTAATTTCTCTAGGCCTTTG+TGG | + | chr8_1:28183657-28183676 | None:intergenic | 40.0% | |
GGCCTAGAGAAATTAGAGAA+TGG | - | chr8_1:28183661-28183680 | Msa1188130:CDS | 40.0% | |
AACGTGAATTGGGTTAAAGC+TGG | - | chr8_1:28184004-28184023 | Msa1188130:intron | 40.0% | |
!! | TCAATTTCTGGTCTCACCAT+AGG | - | chr8_1:28184119-28184138 | Msa1188130:intron | 40.0% |
TTTAATACAGCCAGCTGCAA+AGG | - | chr8_1:28184154-28184173 | Msa1188130:intron | 40.0% | |
! | GAAGTACCTGTCAACAATAC+TGG | - | chr8_1:28184389-28184408 | Msa1188130:CDS | 40.0% |
TGTAGATACTGCATGAGTCA+AGG | + | chr8_1:28184714-28184733 | None:intergenic | 40.0% | |
ATCACTATTCACGTGCTTAC+TGG | + | chr8_1:28184937-28184956 | None:intergenic | 40.0% | |
AATGTGTCACCAAGGTTAGA+TGG | - | chr8_1:28185186-28185205 | Msa1188130:intron | 40.0% | |
! | TCACCAAGGTTAGATGGATT+TGG | - | chr8_1:28185192-28185211 | Msa1188130:intron | 40.0% |
CATTCATGCAATCGACACAT+CGG | - | chr8_1:28185239-28185258 | Msa1188130:intron | 40.0% | |
CTACATGGACAAATTGAAGG+TGG | - | chr8_1:28185634-28185653 | Msa1188130:intron | 40.0% | |
!! | AGTTGATTTTCTTGTGGAGG+CGG | + | chr8_1:28185764-28185783 | None:intergenic | 40.0% |
TGTTGAAATTGTTGCTGCGA+AGG | + | chr8_1:28185797-28185816 | None:intergenic | 40.0% | |
ATTGCGCATTCATGACTAGT+TGG | + | chr8_1:28185830-28185849 | None:intergenic | 40.0% | |
TGAAGCTCCATGGATAATCT+TGG | + | chr8_1:28185880-28185899 | None:intergenic | 40.0% | |
CCATTATACATGAAGCTCCA+TGG | + | chr8_1:28185890-28185909 | None:intergenic | 40.0% | |
CCATGGAGCTTCATGTATAA+TGG | - | chr8_1:28185887-28185906 | Msa1188130:intron | 40.0% | |
TTGTCAGAGTTTCAAGACAC+AGG | - | chr8_1:28185911-28185930 | Msa1188130:intron | 40.0% | |
!! | CAATATCGGTGAAGTTTTGG+AGG | - | chr8_1:28186069-28186088 | Msa1188130:CDS | 40.0% |
AGATGCCGAAAATATGGTTG+TGG | - | chr8_1:28186111-28186130 | Msa1188130:CDS | 40.0% | |
ACTGTAGTGGTTGAAGATGA+CGG | + | chr8_1:28186193-28186212 | None:intergenic | 40.0% | |
CACGTATACCAGATACGACA+CGG | - | chr8_1:28181359-28181378 | Msa1188130:CDS | 45.0% | |
ATTAGTGTCCGTGTCGTATC+TGG | + | chr8_1:28181370-28181389 | None:intergenic | 45.0% | |
!! | TGTAATCATCGGTGTCGTGT+CGG | - | chr8_1:28181433-28181452 | Msa1188130:CDS | 45.0% |
TATGAAGCAGAGACACTCCT+TGG | + | chr8_1:28181507-28181526 | None:intergenic | 45.0% | |
GAGTGTCTCTGCTTCATAGA+TGG | - | chr8_1:28181509-28181528 | Msa1188130:CDS | 45.0% | |
GCAACGTTCACAATCACTTG+CGG | - | chr8_1:28181779-28181798 | Msa1188130:intron | 45.0% | |
! | CTTGAGTGCTGCAAGATCAT+AGG | + | chr8_1:28181997-28182016 | None:intergenic | 45.0% |
! | CTTGCAGCACTCAAGTATTG+GGG | - | chr8_1:28182002-28182021 | Msa1188130:intron | 45.0% |
!! | TTGCAGCACTCAAGTATTGG+GGG | - | chr8_1:28182003-28182022 | Msa1188130:intron | 45.0% |
! | TTTGAGACACAGTTGCACCA+TGG | + | chr8_1:28182883-28182902 | None:intergenic | 45.0% |
GGTGCAACTGTGTCTCAAAA+CGG | - | chr8_1:28182884-28182903 | Msa1188130:intron | 45.0% | |
ACTGTGTCTCAAAACGGATC+CGG | - | chr8_1:28182890-28182909 | Msa1188130:intron | 45.0% | |
ATAGTCGACTGCAGACAATC+CGG | + | chr8_1:28182912-28182931 | None:intergenic | 45.0% | |
! | GTGGACTGTGGACACAAATT+AGG | + | chr8_1:28183638-28183657 | None:intergenic | 45.0% |
TTTGTGTCCACAGTCCACAA+AGG | - | chr8_1:28183640-28183659 | Msa1188130:intron | 45.0% | |
! | GTTAGCATCCGTGTCTTGTT+CGG | + | chr8_1:28183701-28183720 | None:intergenic | 45.0% |
TGGTCTCACCATAGGAACAT+AGG | - | chr8_1:28184127-28184146 | Msa1188130:intron | 45.0% | |
! | TTTTGACCGACATGTTGGCA+GGG | + | chr8_1:28184740-28184759 | None:intergenic | 45.0% |
! | TTTTTGACCGACATGTTGGC+AGG | + | chr8_1:28184741-28184760 | None:intergenic | 45.0% |
TGCTTACTGGATACTTGGGT+GGG | + | chr8_1:28184924-28184943 | None:intergenic | 45.0% | |
CACGTGCTTACTGGATACTT+GGG | + | chr8_1:28184928-28184947 | None:intergenic | 45.0% | |
TCACGTGCTTACTGGATACT+TGG | + | chr8_1:28184929-28184948 | None:intergenic | 45.0% | |
CATTTATGCACTCGGCACAT+TGG | + | chr8_1:28185368-28185387 | None:intergenic | 45.0% | |
CCATGAATTTGGCCTGTATG+CGG | + | chr8_1:28185404-28185423 | None:intergenic | 45.0% | |
ATGGCAGCAATAAAGCACAG+AGG | - | chr8_1:28185578-28185597 | Msa1188130:intron | 45.0% | |
CAATGCTTCTTCGGAATCAG+GGG | + | chr8_1:28185720-28185739 | None:intergenic | 45.0% | |
CCAATGCTTCTTCGGAATCA+GGG | + | chr8_1:28185721-28185740 | None:intergenic | 45.0% | |
TCCAATGCTTCTTCGGAATC+AGG | + | chr8_1:28185722-28185741 | None:intergenic | 45.0% | |
! | TTGATTTTCTTGTGGAGGCG+GGG | + | chr8_1:28185762-28185781 | None:intergenic | 45.0% |
!! | GTTGATTTTCTTGTGGAGGC+GGG | + | chr8_1:28185763-28185782 | None:intergenic | 45.0% |
GGTTCGACTATGAGTAAGTG+TGG | - | chr8_1:28185932-28185951 | Msa1188130:intron | 45.0% | |
TTCAACACGGAAGAACCTTG+TGG | - | chr8_1:28186022-28186041 | Msa1188130:intron | 45.0% | |
!!! | TTTCATTTTAATTATTTTAA+TGG | - | chr8_1:28181696-28181715 | Msa1188130:intron | 5.0% |
!!! | TATAATTTTTTTAGATTTTA+AGG | + | chr8_1:28184539-28184558 | None:intergenic | 5.0% |
CGGACACTAATACGCCGATA+CGG | - | chr8_1:28181379-28181398 | Msa1188130:CDS | 50.0% | |
ACTTACGCGAATCCGACACT+GGG | - | chr8_1:28181470-28181489 | Msa1188130:CDS | 50.0% | |
GATTAAGCGTGTCCCAGTGT+CGG | + | chr8_1:28181485-28181504 | None:intergenic | 50.0% | |
ACTGGGACACGCTTAATCCA+AGG | - | chr8_1:28181487-28181506 | Msa1188130:CDS | 50.0% | |
CGTTCACAATCACTTGCGGA+TGG | - | chr8_1:28181783-28181802 | Msa1188130:intron | 50.0% | |
GCATCACCATAATGGTCGGT+GGG | - | chr8_1:28183374-28183393 | Msa1188130:intron | 50.0% | |
!! | ATCCGTGTCTTGTTCGGTGT+CGG | + | chr8_1:28183695-28183714 | None:intergenic | 50.0% |
CAACCAGCACAACTCACACA+TGG | + | chr8_1:28184041-28184060 | None:intergenic | 50.0% | |
ACAATCCCCTGCCAACATGT+CGG | - | chr8_1:28184731-28184750 | Msa1188130:intron | 50.0% | |
TTTGACCGACATGTTGGCAG+GGG | + | chr8_1:28184739-28184758 | None:intergenic | 50.0% | |
CTTACTGGATACTTGGGTGG+GGG | + | chr8_1:28184922-28184941 | None:intergenic | 50.0% | |
GCTTACTGGATACTTGGGTG+GGG | + | chr8_1:28184923-28184942 | None:intergenic | 50.0% | |
GTGCTTACTGGATACTTGGG+TGG | + | chr8_1:28184925-28184944 | None:intergenic | 50.0% | |
TTATGCACTCGGCACATTGG+TGG | + | chr8_1:28185365-28185384 | None:intergenic | 50.0% | |
CCGCATACAGGCCAAATTCA+TGG | - | chr8_1:28185401-28185420 | Msa1188130:intron | 50.0% | |
AACTCAAGAAGAGGCAGCAG+TGG | - | chr8_1:28185547-28185566 | Msa1188130:intron | 50.0% | |
GGCAGCAGTGGCTTATGATA+TGG | - | chr8_1:28185559-28185578 | Msa1188130:intron | 50.0% | |
! | CCCTGATTCCGAAGAAGCAT+TGG | - | chr8_1:28185718-28185737 | Msa1188130:intron | 50.0% |
! | GCGCATTCATGACTAGTTGG+AGG | + | chr8_1:28185827-28185846 | None:intergenic | 50.0% |
AACACGGAAGAACCTTGTGG+TGG | - | chr8_1:28186025-28186044 | Msa1188130:intron | 50.0% | |
CACTTACGCGAATCCGACAC+TGG | - | chr8_1:28181469-28181488 | Msa1188130:CDS | 55.0% | |
CTAAATACCGTGGGGTTGCC+AGG | - | chr8_1:28182784-28182803 | Msa1188130:intron | 55.0% | |
CATCTAACCTGGCAACCCCA+CGG | + | chr8_1:28182794-28182813 | None:intergenic | 55.0% | |
GGCATCACCATAATGGTCGG+TGG | - | chr8_1:28183373-28183392 | Msa1188130:intron | 55.0% | |
GAGCTTCCCACCGACCATTA+TGG | + | chr8_1:28183383-28183402 | None:intergenic | 55.0% | |
GCTCGCATTGGAAGAGTTCG+TGG | - | chr8_1:28183399-28183418 | Msa1188130:intron | 55.0% | |
! | CTCTAGGCCTTTGTGGACTG+TGG | + | chr8_1:28183650-28183669 | None:intergenic | 55.0% |
CACCGACACCGAACAAGACA+CGG | - | chr8_1:28183690-28183709 | Msa1188130:CDS | 55.0% | |
GCTCCATGTGTGAGTTGTGC+TGG | - | chr8_1:28184035-28184054 | Msa1188130:intron | 55.0% | |
ACGGAAGAACCTTGTGGTGG+TGG | - | chr8_1:28186028-28186047 | Msa1188130:CDS | 55.0% | |
TCTTTGCGGCGGCAAAGCAG+TGG | - | chr8_1:28182744-28182763 | Msa1188130:intron | 60.0% | |
!! | GAACCTTGTGGTGGTGGTCG+TGG | - | chr8_1:28186034-28186053 | Msa1188130:CDS | 60.0% |
TCACCACGACCACCACCACA+AGG | + | chr8_1:28186040-28186059 | None:intergenic | 60.0% | |
GGTCGGTGGGAAGCTCGCAT+TGG | - | chr8_1:28183387-28183406 | Msa1188130:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 28180882 | 28186222 | 28180882 | ID=Msa1188130;Name=Msa1188130 |
chr8_1 | mRNA | 28180882 | 28186222 | 28180882 | ID=Msa1188130-mRNA-1;Parent=Msa1188130;Name=Msa1188130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.2|0|1|1|1|6|0|415 |
chr8_1 | exon | 28186026 | 28186222 | 28186026 | ID=Msa1188130-mRNA-1:exon:9914;Parent=Msa1188130-mRNA-1 |
chr8_1 | exon | 28185815 | 28185897 | 28185815 | ID=Msa1188130-mRNA-1:exon:9913;Parent=Msa1188130-mRNA-1 |
chr8_1 | exon | 28185055 | 28185143 | 28185055 | ID=Msa1188130-mRNA-1:exon:9912;Parent=Msa1188130-mRNA-1 |
chr8_1 | exon | 28184299 | 28184423 | 28184299 | ID=Msa1188130-mRNA-1:exon:9911;Parent=Msa1188130-mRNA-1 |
chr8_1 | exon | 28183654 | 28183730 | 28183654 | ID=Msa1188130-mRNA-1:exon:9910;Parent=Msa1188130-mRNA-1 |
chr8_1 | exon | 28180882 | 28181558 | 28180882 | ID=Msa1188130-mRNA-1:exon:9909;Parent=Msa1188130-mRNA-1 |
chr8_1 | CDS | 28186026 | 28186222 | 28186026 | ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1 |
chr8_1 | CDS | 28185815 | 28185897 | 28185815 | ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1 |
chr8_1 | CDS | 28185055 | 28185143 | 28185055 | ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1 |
chr8_1 | CDS | 28184299 | 28184423 | 28184299 | ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1 |
chr8_1 | CDS | 28183654 | 28183730 | 28183654 | ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1 |
chr8_1 | CDS | 28180882 | 28181558 | 28180882 | ID=Msa1188130-mRNA-1:cds;Parent=Msa1188130-mRNA-1 |
Gene Sequence |
Protein sequence |