AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1191260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191260 MtrunA17_Chr8g0349351 93.871 310 19 0 2 311 97 406 0.0 603
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191260 AT1G01760.4 54.489 323 123 2 12 310 98 420 4.23e-114 336
Msa1191260 AT1G01760.1 54.489 323 123 2 12 310 98 420 4.23e-114 336
Msa1191260 AT1G01760.3 54.489 323 123 2 12 310 111 433 7.83e-114 336
Msa1191260 AT1G01760.2 53.472 288 110 2 12 275 111 398 6.00e-96 290

Find 157 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCACAGCCGCTATTTC+TGG 0.105778 8_1:-35393397 Msa1191260:intron
AAGAGGATTATTAATTTATT+TGG 0.122659 8_1:+35392078 None:intergenic
CTTATTTATAGAAGTGTTTA+TGG 0.137820 8_1:+35397337 None:intergenic
TAGGGATGTAATGGTCATTT+TGG 0.142989 8_1:-35397267 Msa1191260:five_prime_UTR
CTTTGGAAAGTGTGCCTTTA+GGG 0.215242 8_1:-35395014 Msa1191260:CDS
CCTTGTGGTTTGCCTTTCTT+TGG 0.222697 8_1:+35397050 None:intergenic
CGCGACAATTAACTGATATT+AGG 0.229888 8_1:-35397286 Msa1191260:five_prime_UTR
CAACCGGTCTGTTTGGGAAT+TGG 0.243187 8_1:-35392114 Msa1191260:three_prime_UTR
GCTAATAGCTCAAAACAAAT+AGG 0.245909 8_1:-35394180 Msa1191260:CDS
CAACCCCTCGCCTTGTATAA+AGG 0.281408 8_1:+35392324 None:intergenic
AACCGGTCTGTTTGGGAATT+GGG 0.286790 8_1:-35392113 Msa1191260:three_prime_UTR
TAAAACAAACTAGGATCTAA+TGG 0.287787 8_1:+35391800 None:intergenic
CCTTTGGAAAGTGTGCCTTT+AGG 0.295365 8_1:-35395015 Msa1191260:CDS
GAAGGATAAACTATCGAGTT+TGG 0.307316 8_1:+35392347 None:intergenic
AATGGTTCACATTCATCATT+AGG 0.321601 8_1:-35394988 Msa1191260:intron
TTCTTCAGAAGGAACAAGTT+TGG 0.322803 8_1:-35397117 Msa1191260:five_prime_UTR
TTCACGAACCAGTTGCTAAA+AGG 0.324851 8_1:+35392579 None:intergenic
CGGTGAAATTGTTTCTGAAC+TGG 0.325382 8_1:+35392045 None:intergenic
CTAGGTGCAGATTTGCTACT+TGG 0.325562 8_1:+35395324 None:intergenic
CTATTCAAGATTATGAAATC+TGG 0.329997 8_1:-35392153 Msa1191260:three_prime_UTR
TCTGGTTCAACCGGTCTGTT+TGG 0.330297 8_1:-35392121 Msa1191260:three_prime_UTR
ATAGGTAATTAGTCTATGTT+TGG 0.355122 8_1:+35392264 None:intergenic
TTCTCCAAAGTGCTCTGTTT+CGG 0.356372 8_1:-35392390 Msa1191260:three_prime_UTR
CATAAAGATGACTCCGTTGA+TGG 0.363885 8_1:+35393148 None:intergenic
ATATGAGAATGTAGCTCATT+TGG 0.364258 8_1:-35392184 Msa1191260:three_prime_UTR
TCTTCAGAAGGAACAAGTTT+GGG 0.366290 8_1:-35397116 Msa1191260:five_prime_UTR
AAGGATAAACTATCGAGTTT+GGG 0.370454 8_1:+35392348 None:intergenic
TATGAAATACCTTCAGTTCT+CGG 0.375076 8_1:+35392732 None:intergenic
TGTCAGAACAACTAACTGAT+AGG 0.378928 8_1:+35394121 None:intergenic
TGGAATGTTGTTGGCGTTCA+AGG 0.383827 8_1:-35394087 Msa1191260:intron
CAGACCTGGTTCACAAGAAA+TGG 0.385392 8_1:+35393490 None:intergenic
GCGTAATATACTTTCCGCTT+TGG 0.385882 8_1:+35392241 None:intergenic
ACTATCGAGTTTGGGGAAAC+AGG 0.386693 8_1:+35392356 None:intergenic
TAATCAATGAATAATTTAGA+AGG 0.390130 8_1:+35391700 None:intergenic
TTCATAATCTTGAATAGAAC+TGG 0.391243 8_1:+35392159 None:intergenic
TTTGTTTGAGAGCATGGTTT+TGG 0.392511 8_1:-35392505 Msa1191260:three_prime_UTR
CTAATGGGTTGTGCAACTTC+CGG 0.393252 8_1:+35391816 None:intergenic
TACAATTCACTTCCAAAGAA+AGG 0.393457 8_1:-35397062 Msa1191260:five_prime_UTR
AGAAAATCCTTTGGCGGTAC+AGG 0.394356 8_1:+35393369 None:intergenic
GGAGTTAAGAGGAGAGGGAA+GGG 0.395069 8_1:+35392286 None:intergenic
TTCTGAAGAAGCCATAGATA+TGG 0.398052 8_1:+35397130 None:intergenic
CATTCTCATATAACAAAACT+TGG 0.398478 8_1:+35392196 None:intergenic
GTCTATGTTTGGGAGTTAAG+AGG 0.401429 8_1:+35392275 None:intergenic
TTCCAGAAAGAGGCTGTTAG+AGG 0.401447 8_1:-35392813 Msa1191260:intron
AACCCCTCGCCTTGTATAAA+GGG 0.401898 8_1:+35392325 None:intergenic
CTGGTTCAACCGGTCTGTTT+GGG 0.403722 8_1:-35392120 Msa1191260:three_prime_UTR
GCGACAATTAACTGATATTA+GGG 0.404317 8_1:-35397285 Msa1191260:five_prime_UTR
CGCCACGACCTGGCTTCCTC+TGG 0.405708 8_1:+35394151 None:intergenic
CACTTGCAAAGCCATATCTA+TGG 0.411700 8_1:-35397141 Msa1191260:five_prime_UTR
CTAATAGCTCAAAACAAATA+GGG 0.412209 8_1:-35394179 Msa1191260:CDS
GAGCTCGCTTGTCACTCCTT+TGG 0.412637 8_1:-35395031 Msa1191260:CDS
TTCAAAGTGCAAGTCAATAT+TGG 0.415918 8_1:-35391943 Msa1191260:three_prime_UTR
GTTTGGGAGTTAAGAGGAGA+GGG 0.419825 8_1:+35392281 None:intergenic
AGGCCGTGAAGTCACTGTTT+TGG 0.420142 8_1:-35397030 Msa1191260:five_prime_UTR
TCAGATTGCAGAAAATCCTT+TGG 0.422820 8_1:+35393360 None:intergenic
AGGCTATGAACAAAGATGTT+AGG 0.424898 8_1:+35391865 None:intergenic
CTTCTCTCTTCTCCTTCCAA+TGG 0.431815 8_1:-35396999 Msa1191260:intron
GGAGGGAAGGAGACTAGGGG+AGG 0.433419 8_1:-35392484 Msa1191260:three_prime_UTR
GAAGTCACTCTTGGAACTAC+TGG 0.437006 8_1:-35393208 Msa1191260:CDS
AAGCAAGGTACGTCTGCAAA+AGG 0.440364 8_1:-35393181 Msa1191260:CDS
CAGATAGACACAAAACATAT+TGG 0.442366 8_1:+35391755 None:intergenic
AAAACAAACTAGGATCTAAT+GGG 0.442755 8_1:+35391801 None:intergenic
ACTCTTGCATGAAATTCAAT+TGG 0.443225 8_1:+35392219 None:intergenic
TTGAGTAGCAAGTGCACTTA+GGG 0.445473 8_1:-35391624 Msa1191260:three_prime_UTR
TTAAGCTTTGTTTGAGAGCA+TGG 0.454339 8_1:-35392511 Msa1191260:three_prime_UTR
AACTGATATTAGGGATGTAA+TGG 0.456643 8_1:-35397276 Msa1191260:five_prime_UTR
ATTGCACCGTCTGGTTCAAC+CGG 0.461652 8_1:-35392130 Msa1191260:three_prime_UTR
TTGGGAATTGGGCATATGTC+CGG 0.466229 8_1:-35392102 Msa1191260:three_prime_UTR
AATCTCATCATCCAGGGACT+TGG 0.466733 8_1:+35392760 None:intergenic
AAGGAACAAGTTTGGGTCAA+AGG 0.469024 8_1:-35397109 Msa1191260:five_prime_UTR
GGGAGTTAAGAGGAGAGGGA+AGG 0.473890 8_1:+35392285 None:intergenic
GAAACGTGAGAAATATTTGA+AGG 0.474741 8_1:+35391887 None:intergenic
GGCTTACATGAAGTCACTCT+TGG 0.479209 8_1:-35393217 Msa1191260:CDS
ATAGCACGTTGGAATGTTGT+TGG 0.479876 8_1:-35394096 Msa1191260:CDS
CGGCCAAAACAGTGACTTCA+CGG 0.482313 8_1:+35397027 None:intergenic
AGCAAGGTACGTCTGCAAAA+GGG 0.483364 8_1:-35393180 Msa1191260:CDS
GTAATTGACGAAAGATATAC+AGG 0.487469 8_1:+35393616 None:intergenic
TAGGTAATTAGTCTATGTTT+GGG 0.487533 8_1:+35392265 None:intergenic
ACTGAGAACTGTCATAAAAC+CGG 0.489931 8_1:+35392025 None:intergenic
GTGAGAAATATTTGAAGGAT+GGG 0.490491 8_1:+35391892 None:intergenic
TCAGTTAATTGTCGCGGCGG+CGG 0.492316 8_1:+35397293 None:intergenic
AGGAACAAGTTTGGGTCAAA+GGG 0.496402 8_1:-35397108 Msa1191260:five_prime_UTR
GAAAATCCTTTGGCGGTACA+GGG 0.496591 8_1:+35393370 None:intergenic
GAAATCTGGATTGCACCGTC+TGG 0.497355 8_1:-35392139 Msa1191260:three_prime_UTR
GGTAAGTAATCTCATCATCC+AGG 0.501569 8_1:+35392753 None:intergenic
TATCTTTCGTCAATTACCAT+TGG 0.504898 8_1:-35393610 Msa1191260:CDS
GGCTGCCCCTGTACCGCCAA+AGG 0.506347 8_1:-35393376 Msa1191260:CDS
TTTGGAGGGAAGGAGACTAG+GGG 0.513662 8_1:-35392487 Msa1191260:three_prime_UTR
GGGATGGTCCAGAGGAAGCC+AGG 0.516260 8_1:-35394159 Msa1191260:CDS
GATTATTAATTTATTTGGAC+CGG 0.516354 8_1:+35392083 None:intergenic
ATATACTTTCCGCTTTGGAT+AGG 0.518239 8_1:+35392246 None:intergenic
TTTATCCTTCCCTTTATACA+AGG 0.518493 8_1:-35392334 Msa1191260:three_prime_UTR
CAGTTCAGAAACAATTTCAC+CGG 0.518589 8_1:-35392044 Msa1191260:three_prime_UTR
GATTGCAGAAAATCCTTTGG+CGG 0.519716 8_1:+35393363 None:intergenic
TGTTTGGGAGTTAAGAGGAG+AGG 0.519825 8_1:+35392280 None:intergenic
GTTGAGTAGCAAGTGCACTT+AGG 0.522097 8_1:-35391625 Msa1191260:three_prime_UTR
CGTGAGAAATATTTGAAGGA+TGG 0.522337 8_1:+35391891 None:intergenic
GTCCAGAGGAAGCCAGGTCG+TGG 0.523654 8_1:-35394153 Msa1191260:CDS
ATCTCCATTTCTTGTGAACC+AGG 0.528812 8_1:-35393494 Msa1191260:intron
GTCTGTAGAGTGAACTCAAG+TGG 0.532586 8_1:+35397196 None:intergenic
ATATCTATGGCTTCTTCAGA+AGG 0.534371 8_1:-35397128 Msa1191260:five_prime_UTR
TGATGACAACTTAGCATTCG+AGG 0.535844 8_1:-35395274 Msa1191260:CDS
TGGTAGTTGAATGTGCCATC+CGG 0.537858 8_1:-35391835 Msa1191260:three_prime_UTR
TAATTTCCAACCACTTCTCA+AGG 0.548020 8_1:+35395218 None:intergenic
CGGAAATACACCTTGAGAAG+TGG 0.548114 8_1:-35395228 Msa1191260:CDS
CTGCTAACAATTTGACATGC+GGG 0.548601 8_1:-35393332 Msa1191260:intron
CTTCCCTTTATACAAGGCGA+GGG 0.555110 8_1:-35392328 Msa1191260:three_prime_UTR
GCAAGGTACGTCTGCAAAAG+GGG 0.555230 8_1:-35393179 Msa1191260:CDS
ACGAAGGGTGTCTTGACAAA+CGG 0.562147 8_1:-35395248 Msa1191260:CDS
CAACTGGTTCGTGAAACCAT+TGG 0.563798 8_1:-35392571 Msa1191260:CDS
AAAGCCGAAACAGAGCACTT+TGG 0.563898 8_1:+35392386 None:intergenic
TGCCCAATTCCCAAACAGAC+CGG 0.566797 8_1:+35392111 None:intergenic
AGCAAATCTGCACCTAGCAA+TGG 0.568979 8_1:-35395318 Msa1191260:CDS
GTCAGAACAACTAACTGATA+GGG 0.569357 8_1:+35394122 None:intergenic
TTGGAAAGTGTGCCTTTAGG+GGG 0.575801 8_1:-35395012 Msa1191260:CDS
GGAACTACTGGAAGAAAGCA+AGG 0.576402 8_1:-35393196 Msa1191260:CDS
CCTTCCCTTTATACAAGGCG+AGG 0.579032 8_1:-35392329 Msa1191260:three_prime_UTR
GAGGGAAGGAGACTAGGGGA+GGG 0.579638 8_1:-35392483 Msa1191260:three_prime_UTR
ACGAACCAGTTGCTAAAAGG+TGG 0.580680 8_1:+35392582 None:intergenic
AACAAATAGGGATGGTCCAG+AGG 0.581257 8_1:-35394167 Msa1191260:CDS
TTGACGAAAGATATACAGGT+TGG 0.582340 8_1:+35393620 None:intergenic
TATCACAAATAAAACAAACT+AGG 0.584260 8_1:+35391791 None:intergenic
TTGTTCATAGCCTCGACGCA+TGG 0.589091 8_1:-35391855 Msa1191260:three_prime_UTR
TGAGAAAGAATACCATTGGA+AGG 0.589185 8_1:+35396987 None:intergenic
CACCTAGCAATGGAGCAAAA+CGG 0.594322 8_1:-35395308 Msa1191260:CDS
AATACACCTTGAGAAGTGGT+TGG 0.602768 8_1:-35395224 Msa1191260:CDS
GGGAATGCCTCACAGTCCAA+TGG 0.603663 8_1:+35392555 None:intergenic
TTTGGAAAGTGTGCCTTTAG+GGG 0.603904 8_1:-35395013 Msa1191260:CDS
TGAGAAATATTTGAAGGATG+GGG 0.612092 8_1:+35391893 None:intergenic
CCTCGCCTTGTATAAAGGGA+AGG 0.615459 8_1:+35392329 None:intergenic
TAGCTCAAAACAAATAGGGA+TGG 0.616682 8_1:-35394175 Msa1191260:CDS
ACAGGGGCAGCCAGAAATAG+CGG 0.617648 8_1:+35393387 None:intergenic
TTAGCATTCGAGGTGGACGA+AGG 0.622841 8_1:-35395264 Msa1191260:CDS
GTAAGTAATCTCATCATCCA+GGG 0.628496 8_1:+35392754 None:intergenic
ATAAATAAGCCAGAACGCAA+CGG 0.629398 8_1:-35397323 Msa1191260:five_prime_UTR
TCTGCTAACAATTTGACATG+CGG 0.629762 8_1:-35393333 Msa1191260:CDS
TAGCATTCGAGGTGGACGAA+GGG 0.630072 8_1:-35395263 Msa1191260:CDS
TCTATATGTTGGAATGAATG+TGG 0.630769 8_1:-35393238 Msa1191260:CDS
ACTGATTTGCGAAAGACCAA+TGG 0.632806 8_1:+35393594 None:intergenic
CCAAAGAAAGGCAAACCACA+AGG 0.633918 8_1:-35397050 Msa1191260:five_prime_UTR
TGGGTTGTGCAACTTCCGGA+TGG 0.634699 8_1:+35391820 None:intergenic
AACAGACCGGTTGAACCAGA+CGG 0.635532 8_1:+35392124 None:intergenic
GATTACTTACCGAGAACTGA+AGG 0.637422 8_1:-35392741 Msa1191260:intron
AAAATCCTTTGGCGGTACAG+GGG 0.640851 8_1:+35393371 None:intergenic
CTAATATCAGTTAATTGTCG+CGG 0.648021 8_1:+35397287 None:intergenic
AGGAGAAGAGAGAAGAAAAG+CGG 0.648460 8_1:+35397007 None:intergenic
AGGATAAACTATCGAGTTTG+GGG 0.648594 8_1:+35392349 None:intergenic
AGGGGCACTCTATCCATCAA+CGG 0.653075 8_1:-35393161 Msa1191260:CDS
TTCCCTTTATACAAGGCGAG+GGG 0.657937 8_1:-35392327 Msa1191260:three_prime_UTR
CCTAAAGGCACACTTTCCAA+AGG 0.662000 8_1:+35395015 None:intergenic
GACTAATTACCTATCCAAAG+CGG 0.668896 8_1:-35392255 Msa1191260:three_prime_UTR
CGTGAAACCATTGGACTGTG+AGG 0.673902 8_1:-35392562 Msa1191260:CDS
ACAGTGACTTCACGGCCTTG+TGG 0.679357 8_1:+35397035 None:intergenic
CATTCAACTACCATGCGTCG+AGG 0.690442 8_1:+35391845 None:intergenic
TGACAACTTAGCATTCGAGG+TGG 0.724731 8_1:-35395271 Msa1191260:CDS
ATATCAGTTAATTGTCGCGG+CGG 0.745952 8_1:+35397290 None:intergenic
GTTCTGACAAGATAGCACGT+TGG 0.771719 8_1:-35394107 Msa1191260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATTTTACTTCAATTT+AGG + chr8_1:35392056-35392075 None:intergenic 10.0%
!! TTAGGTATTTAAAAAAATAT+TGG + chr8_1:35394585-35394604 None:intergenic 10.0%
!!! ATGTATTATTATTTTGAAAT+GGG + chr8_1:35396429-35396448 None:intergenic 10.0%
!!! AATGTATTATTATTTTGAAA+TGG + chr8_1:35396430-35396449 None:intergenic 10.0%
!! AAAAATTGAAAATTGGTTAA+TGG + chr8_1:35392030-35392049 None:intergenic 15.0%
!! TAGGATTAAAAATTGAAAAT+TGG + chr8_1:35392037-35392056 None:intergenic 15.0%
!! TAGTTCAAAATCAATATTTA+TGG + chr8_1:35392278-35392297 None:intergenic 15.0%
!!! AATTTAAACTGATTTATGTT+TGG - chr8_1:35392487-35392506 Msa1191260:three_prime_UTR 15.0%
!! TATGGTTAATGAATATAATA+AGG - chr8_1:35392868-35392887 Msa1191260:intron 15.0%
!! AATCATAGTTAAATTATGAA+CGG + chr8_1:35392917-35392936 None:intergenic 15.0%
!! ATATATACTTGAACATAATT+TGG + chr8_1:35392990-35393009 None:intergenic 15.0%
!!! AAATGTAAAAGTATGTATTA+AGG + chr8_1:35393303-35393322 None:intergenic 15.0%
!! CTAAAGTTGTATAAAATATA+AGG - chr8_1:35393330-35393349 Msa1191260:intron 15.0%
!! TTTAAAAATTTAGCAAAATC+TGG - chr8_1:35394152-35394171 Msa1191260:CDS 15.0%
!! TTTGAATAAAAATGAGTTTA+GGG + chr8_1:35394214-35394233 None:intergenic 15.0%
!! TTTCTATTTAGAAAGATATT+AGG + chr8_1:35394603-35394622 None:intergenic 15.0%
!! GATTATAATTCTCAAAAAAT+TGG - chr8_1:35394671-35394690 Msa1191260:intron 15.0%
!! TATGAAATAAAAAAACACTA+TGG + chr8_1:35394700-35394719 None:intergenic 15.0%
!!! TAGTGTTTTTTTATTTCATA+TGG - chr8_1:35394700-35394719 Msa1191260:intron 15.0%
!!! ATAATGTAACAGTTTTAATA+CGG - chr8_1:35394984-35395003 Msa1191260:intron 15.0%
!! GATTTCATATTAACTATATT+TGG - chr8_1:35395059-35395078 Msa1191260:intron 15.0%
!!! TTTTTAGTTTATAGTCTAAA+TGG - chr8_1:35395129-35395148 Msa1191260:intron 15.0%
!! TCTCATTTGAATATATTTAT+TGG + chr8_1:35396072-35396091 None:intergenic 15.0%
!!! TGTATTATTATTTTGAAATG+GGG + chr8_1:35396428-35396447 None:intergenic 15.0%
!! AAGAGGATTATTAATTTATT+TGG + chr8_1:35396885-35396904 None:intergenic 15.0%
!! TAATCAATGAATAATTTAGA+AGG + chr8_1:35397263-35397282 None:intergenic 15.0%
!!! CTTATTTATAGAAGTGTTTA+TGG + chr8_1:35391626-35391645 None:intergenic 20.0%
!! TAACATTTAGTGTAAAAATC+AGG - chr8_1:35392538-35392557 Msa1191260:exon 20.0%
!! GGTTGATTATGTTAAATATA+TGG - chr8_1:35392850-35392869 Msa1191260:intron 20.0%
!!! TTCAAGTATATATGATTTTC+AGG - chr8_1:35392997-35393016 Msa1191260:intron 20.0%
!!! GTATACATTTTTCTGTATTT+TGG + chr8_1:35393135-35393154 None:intergenic 20.0%
!! AAGTTGTATAAAATATAAGG+TGG - chr8_1:35393333-35393352 Msa1191260:CDS 20.0%
!!! TAATAAAGTTTTTTCAAGTG+TGG + chr8_1:35393508-35393527 None:intergenic 20.0%
!! GTTAAATTAATCAATAAGCA+TGG + chr8_1:35393533-35393552 None:intergenic 20.0%
!!! GCTAAATTTTTAAAATGTAG+AGG + chr8_1:35394146-35394165 None:intergenic 20.0%
!! CTTTGAATAAAAATGAGTTT+AGG + chr8_1:35394215-35394234 None:intergenic 20.0%
!!! CTAAACTCATTTTTATTCAA+AGG - chr8_1:35394213-35394232 Msa1191260:intron 20.0%
!!! TCATTTTTATTCAAAGGTTT+AGG - chr8_1:35394219-35394238 Msa1191260:intron 20.0%
!!! CATTTTTATTCAAAGGTTTA+GGG - chr8_1:35394220-35394239 Msa1191260:intron 20.0%
!!! ATTTTTATTCAAAGGTTTAG+GGG - chr8_1:35394221-35394240 Msa1191260:intron 20.0%
!!! TTTTTGTAGGATGTAATAAT+AGG - chr8_1:35394312-35394331 Msa1191260:intron 20.0%
!!! TTTTGTAGGATGTAATAATA+GGG - chr8_1:35394313-35394332 Msa1191260:intron 20.0%
!!! TACATTTTTAGCAAATTTGA+TGG + chr8_1:35394505-35394524 None:intergenic 20.0%
!!! CAAATTTGCTAAAAATGTAT+TGG - chr8_1:35394506-35394525 Msa1191260:intron 20.0%
!! TAAAACTGTTACATTATATC+AGG + chr8_1:35394981-35395000 None:intergenic 20.0%
!! TGAGTTAAATAATGAATTGT+AGG - chr8_1:35395517-35395536 Msa1191260:intron 20.0%
!! TTTATCCTAACAATTAAACA+GGG + chr8_1:35395871-35395890 None:intergenic 20.0%
!! ATTTATCCTAACAATTAAAC+AGG + chr8_1:35395872-35395891 None:intergenic 20.0%
!!! TATGGAAATAAGTTGAAAAT+AGG - chr8_1:35396005-35396024 Msa1191260:intron 20.0%
!!! AATAAGTTGAAAATAGGTTA+TGG - chr8_1:35396011-35396030 Msa1191260:intron 20.0%
!! GATTATTAATTTATTTGGAC+CGG + chr8_1:35396880-35396899 None:intergenic 20.0%
!! TATCACAAATAAAACAAACT+AGG + chr8_1:35397172-35397191 None:intergenic 20.0%
!!! TTTGTTTTATTTGTGATATG+TGG - chr8_1:35397174-35397193 Msa1191260:five_prime_UTR 20.0%
! TTGAAAATTGAGAAGAGAAA+GGG + chr8_1:35392004-35392023 None:intergenic 25.0%
! ATTGAAAATTGAGAAGAGAA+AGG + chr8_1:35392005-35392024 None:intergenic 25.0%
! AACTACAAATCCTAGATTTA+AGG - chr8_1:35392573-35392592 Msa1191260:CDS 25.0%
!! ATTTAAGGTAGAGTCAATTA+TGG - chr8_1:35392588-35392607 Msa1191260:CDS 25.0%
! GCAAATTCAATTCTATTCTA+AGG - chr8_1:35392613-35392632 Msa1191260:CDS 25.0%
!! TTGATCAAAATTGATTCTAG+AGG + chr8_1:35392668-35392687 None:intergenic 25.0%
! AATTTCGACAGTAAATTAGA+CGG - chr8_1:35392807-35392826 Msa1191260:CDS 25.0%
!!! TTTTCTGTATTTTGGAATCA+TGG + chr8_1:35393127-35393146 None:intergenic 25.0%
! AATGTATACTATGTGTTTGA+TGG - chr8_1:35393146-35393165 Msa1191260:CDS 25.0%
! ATCAAATTTGACAGTTAATG+CGG + chr8_1:35393244-35393263 None:intergenic 25.0%
!!! CATTTTTTTCTATTTACACC+AGG - chr8_1:35393580-35393599 Msa1191260:CDS 25.0%
! AAATGAGGAATTAGATTACA+TGG + chr8_1:35393789-35393808 None:intergenic 25.0%
! TTTGATTGCTCAAAAAAGTA+AGG + chr8_1:35394121-35394140 None:intergenic 25.0%
!! GAATTCGAAGAAATTTTTGT+AGG - chr8_1:35394299-35394318 Msa1191260:intron 25.0%
!! TTTGACTCGATTAAATAGTT+TGG + chr8_1:35394430-35394449 None:intergenic 25.0%
! TACACATTAGATATCATAGA+GGG - chr8_1:35394540-35394559 Msa1191260:intron 25.0%
!! GCATTTGTTGAAAAATAACA+GGG + chr8_1:35394646-35394665 None:intergenic 25.0%
!! AGCATTTGTTGAAAAATAAC+AGG + chr8_1:35394647-35394666 None:intergenic 25.0%
! CTAATAGCTCAAAACAAATA+GGG - chr8_1:35394781-35394800 Msa1191260:intron 25.0%
!! GAATACTGACTATTTGTTTA+GGG + chr8_1:35395201-35395220 None:intergenic 25.0%
!! TGAATACTGACTATTTGTTT+AGG + chr8_1:35395202-35395221 None:intergenic 25.0%
! GCTTTGTGATTAAACAATAT+TGG - chr8_1:35395237-35395256 Msa1191260:CDS 25.0%
!! TGTATGTGGATTATATGTTT+CGG - chr8_1:35395262-35395281 Msa1191260:CDS 25.0%
!!! TTTTCAGGTATTCTATATGT+TGG - chr8_1:35395711-35395730 Msa1191260:intron 25.0%
! TAACAAGAAAAATATCAGCT+AGG + chr8_1:35396108-35396127 None:intergenic 25.0%
!! TTAGCTTCCAAGATTTTTAA+AGG - chr8_1:35396351-35396370 Msa1191260:intron 25.0%
!! TAGCTTCCAAGATTTTTAAA+GGG - chr8_1:35396352-35396371 Msa1191260:intron 25.0%
!! TAGGTAATTAGTCTATGTTT+GGG + chr8_1:35396698-35396717 None:intergenic 25.0%
!! ATAGGTAATTAGTCTATGTT+TGG + chr8_1:35396699-35396718 None:intergenic 25.0%
! CATTCTCATATAACAAAACT+TGG + chr8_1:35396767-35396786 None:intergenic 25.0%
! TTCATAATCTTGAATAGAAC+TGG + chr8_1:35396804-35396823 None:intergenic 25.0%
! CTATTCAAGATTATGAAATC+TGG - chr8_1:35396807-35396826 Msa1191260:intron 25.0%
!!! TTGTCATTTTTTAAGCAATG+TGG - chr8_1:35396960-35396979 Msa1191260:intron 25.0%
!!! TGTCATTTTTTAAGCAATGT+GGG - chr8_1:35396961-35396980 Msa1191260:intron 25.0%
! AAAACAAACTAGGATCTAAT+GGG + chr8_1:35397162-35397181 None:intergenic 25.0%
! TAAAACAAACTAGGATCTAA+TGG + chr8_1:35397163-35397182 None:intergenic 25.0%
!!! TTAAGAATTTTGATTCGTAC+CGG - chr8_1:35397280-35397299 Msa1191260:five_prime_UTR 25.0%
CTAATATCAGTTAATTGTCG+CGG + chr8_1:35391676-35391695 None:intergenic 30.0%
GCGACAATTAACTGATATTA+GGG - chr8_1:35391675-35391694 Msa1191260:three_prime_UTR 30.0%
AACTGATATTAGGGATGTAA+TGG - chr8_1:35391684-35391703 Msa1191260:three_prime_UTR 30.0%
TACAATTCACTTCCAAAGAA+AGG - chr8_1:35391898-35391917 Msa1191260:three_prime_UTR 30.0%
AAGATGAGAAAGAATACCAT+TGG + chr8_1:35391980-35391999 None:intergenic 30.0%
! TTTGGGATGTTAAGAATTGA+AGG - chr8_1:35392083-35392102 Msa1191260:three_prime_UTR 30.0%
! ATTGACTCTACCTTAAATCT+AGG + chr8_1:35392586-35392605 None:intergenic 30.0%
!! TAGAGGTGGAAAATTGATTT+TGG + chr8_1:35392651-35392670 None:intergenic 30.0%
! ATCAAAATTGATTCTAGAGG+TGG + chr8_1:35392665-35392684 None:intergenic 30.0%
ACCATATTTGTATTCCTTGA+TGG - chr8_1:35392751-35392770 Msa1191260:CDS 30.0%
CCATATTTGTATTCCTTGAT+GGG - chr8_1:35392752-35392771 Msa1191260:CDS 30.0%
GTTAACACAATTCACATATG+TGG - chr8_1:35392829-35392848 Msa1191260:intron 30.0%
AAATTCACTAGAGAGAGAAA+AGG + chr8_1:35393818-35393837 None:intergenic 30.0%
CTACAGAATGAAACACAAAA+AGG + chr8_1:35393893-35393912 None:intergenic 30.0%
! CTTTTTGTGTTTCATTCTGT+AGG - chr8_1:35393891-35393910 Msa1191260:intron 30.0%
AATGGTTCACATTCATCATT+AGG - chr8_1:35393972-35393991 Msa1191260:intron 30.0%
GCAAATGTCCAACATTTAAT+TGG - chr8_1:35394058-35394077 Msa1191260:intron 30.0%
CCAAAACTCCAATTAAATGT+TGG + chr8_1:35394069-35394088 None:intergenic 30.0%
! CCAACATTTAATTGGAGTTT+TGG - chr8_1:35394066-35394085 Msa1191260:intron 30.0%
AAAGGTTTAGGGGTTTATAA+TGG - chr8_1:35394231-35394250 Msa1191260:intron 30.0%
!! TAGGGGTTTATAATGGATTT+AGG - chr8_1:35394238-35394257 Msa1191260:intron 30.0%
! GGATGTAATAATAGGGTTTT+AGG - chr8_1:35394320-35394339 Msa1191260:intron 30.0%
CTACACATTAGATATCATAG+AGG - chr8_1:35394539-35394558 Msa1191260:intron 30.0%
!! ATTGGCTTTAGTTGAATTTG+TGG + chr8_1:35394567-35394586 None:intergenic 30.0%
GCTAATAGCTCAAAACAAAT+AGG - chr8_1:35394780-35394799 Msa1191260:intron 30.0%
! AAACAATATTGGTCTGTATG+TGG - chr8_1:35395248-35395267 Msa1191260:CDS 30.0%
GTAATTGACGAAAGATATAC+AGG + chr8_1:35395347-35395366 None:intergenic 30.0%
TATCTTTCGTCAATTACCAT+TGG - chr8_1:35395350-35395369 Msa1191260:intron 30.0%
! TCCTGAAAATTTTCATTTCG+AGG - chr8_1:35395388-35395407 Msa1191260:intron 30.0%
! TCCTCGAAATGAAAATTTTC+AGG + chr8_1:35395392-35395411 None:intergenic 30.0%
! AGCTGAATGCTTAAATTTTC+AGG - chr8_1:35395696-35395715 Msa1191260:intron 30.0%
TCTATATGTTGGAATGAATG+TGG - chr8_1:35395722-35395741 Msa1191260:intron 30.0%
!! AAGCTATTTTAGAGAGCTTA+TGG - chr8_1:35395987-35396006 Msa1191260:intron 30.0%
AAATATCAGCTAGGTCTATT+TGG + chr8_1:35396099-35396118 None:intergenic 30.0%
TATAATTGCTTTCCAGAAAG+AGG - chr8_1:35396137-35396156 Msa1191260:intron 30.0%
TATGAAATACCTTCAGTTCT+CGG + chr8_1:35396231-35396250 None:intergenic 30.0%
!! ACTGAAGGTATTTCATATGA+TGG - chr8_1:35396234-35396253 Msa1191260:intron 30.0%
TTTATCCTTCCCTTTATACA+AGG - chr8_1:35396626-35396645 Msa1191260:intron 30.0%
ACTCTTGCATGAAATTCAAT+TGG + chr8_1:35396744-35396763 None:intergenic 30.0%
ATATGAGAATGTAGCTCATT+TGG - chr8_1:35396776-35396795 Msa1191260:intron 30.0%
!!! GAACTGGTTTTTATGTAAAG+AGG + chr8_1:35396902-35396921 None:intergenic 30.0%
TTCAAAGTGCAAGTCAATAT+TGG - chr8_1:35397017-35397036 Msa1191260:five_prime_UTR 30.0%
TGAGAAATATTTGAAGGATG+GGG + chr8_1:35397070-35397089 None:intergenic 30.0%
GTGAGAAATATTTGAAGGAT+GGG + chr8_1:35397071-35397090 None:intergenic 30.0%
GAAACGTGAGAAATATTTGA+AGG + chr8_1:35397076-35397095 None:intergenic 30.0%
CAGATAGACACAAAACATAT+TGG + chr8_1:35397208-35397227 None:intergenic 30.0%
! TATGTTTTGTGTCTATCTGT+AGG - chr8_1:35397209-35397228 Msa1191260:five_prime_UTR 30.0%
! AATTTTACACCTATGATAGC+CGG + chr8_1:35397302-35397321 None:intergenic 30.0%
ATAAATAAGCCAGAACGCAA+CGG - chr8_1:35391637-35391656 Msa1191260:three_prime_UTR 35.0%
CGCGACAATTAACTGATATT+AGG - chr8_1:35391674-35391693 Msa1191260:three_prime_UTR 35.0%
! TAGGGATGTAATGGTCATTT+TGG - chr8_1:35391693-35391712 Msa1191260:three_prime_UTR 35.0%
!! AGGGATGTAATGGTCATTTT+GGG - chr8_1:35391694-35391713 Msa1191260:three_prime_UTR 35.0%
! TTCTGAAGAAGCCATAGATA+TGG + chr8_1:35391833-35391852 None:intergenic 35.0%
ATATCTATGGCTTCTTCAGA+AGG - chr8_1:35391832-35391851 Msa1191260:three_prime_UTR 35.0%
TTCTTCAGAAGGAACAAGTT+TGG - chr8_1:35391843-35391862 Msa1191260:three_prime_UTR 35.0%
TCTTCAGAAGGAACAAGTTT+GGG - chr8_1:35391844-35391863 Msa1191260:three_prime_UTR 35.0%
TGAGAAAGAATACCATTGGA+AGG + chr8_1:35391976-35391995 None:intergenic 35.0%
TCATGAACAACATCACCATA+AGG + chr8_1:35392159-35392178 None:intergenic 35.0%
TCTCAAACTATTATCCGTGT+CGG + chr8_1:35392314-35392333 None:intergenic 35.0%
! GGTGCTTCATAGTTTTTGAA+TGG - chr8_1:35392435-35392454 Msa1191260:three_prime_UTR 35.0%
TAAGGTAGAGTCAATTATGG+AGG - chr8_1:35392591-35392610 Msa1191260:CDS 35.0%
CCCATCAAGGAATACAAATA+TGG + chr8_1:35392755-35392774 None:intergenic 35.0%
ATGTGTGCACTTGAAAATTG+TGG + chr8_1:35392954-35392973 None:intergenic 35.0%
GGTCTATGTCAGTGTATATT+CGG + chr8_1:35393063-35393082 None:intergenic 35.0%
AAGTTAATGCAGCCTAGAAA+GGG + chr8_1:35393084-35393103 None:intergenic 35.0%
AAAGTTAATGCAGCCTAGAA+AGG + chr8_1:35393085-35393104 None:intergenic 35.0%
GATGGATCATTAATGAGTTG+TGG - chr8_1:35393164-35393183 Msa1191260:CDS 35.0%
ACAGTTAATGCGGTTCAAAT+AGG + chr8_1:35393234-35393253 None:intergenic 35.0%
! AGTTCATTTTGCGAGAATAG+TGG - chr8_1:35393414-35393433 Msa1191260:intron 35.0%
! GTTCATTTTGCGAGAATAGT+GGG - chr8_1:35393415-35393434 Msa1191260:intron 35.0%
!!! AGTTTTTTCAAGTGTGGTCT+CGG + chr8_1:35393502-35393521 None:intergenic 35.0%
AATCTGTGTATAGAAGAACC+TGG + chr8_1:35393601-35393620 None:intergenic 35.0%
TAATTTCCAACCACTTCTCA+AGG + chr8_1:35393745-35393764 None:intergenic 35.0%
TTTGTGTTTCATTCTGTAGG+TGG - chr8_1:35393894-35393913 Msa1191260:intron 35.0%
GTTTGTGTATAGCATGACTA+AGG - chr8_1:35394004-35394023 Msa1191260:intron 35.0%
ATCTGATCTAAGCTTTCTGT+TGG + chr8_1:35394030-35394049 None:intergenic 35.0%
!!! ATTGGAGTTTTGGTTTCATC+TGG - chr8_1:35394076-35394095 Msa1191260:intron 35.0%
! ATCTGGACTATGTGCAATTT+TGG - chr8_1:35394093-35394112 Msa1191260:CDS 35.0%
!! GTTTAGGGTTCTAGATTTCT+AGG + chr8_1:35394199-35394218 None:intergenic 35.0%
AATCGAGTCAAAGTAGAAAG+TGG - chr8_1:35394438-35394457 Msa1191260:intron 35.0%
ATCGAGTCAAAGTAGAAAGT+GGG - chr8_1:35394439-35394458 Msa1191260:intron 35.0%
GAGCTATTAGCTGAAATGAA+AGG + chr8_1:35394771-35394790 None:intergenic 35.0%
TAGCTCAAAACAAATAGGGA+TGG - chr8_1:35394785-35394804 Msa1191260:intron 35.0%
GTCAGAACAACTAACTGATA+GGG + chr8_1:35394841-35394860 None:intergenic 35.0%
TGTCAGAACAACTAACTGAT+AGG + chr8_1:35394842-35394861 None:intergenic 35.0%
! ATTGGTGTTTGTGTGAATGT+TGG - chr8_1:35395037-35395056 Msa1191260:CDS 35.0%
AAGCATAGATGTGAAGTTTG+AGG - chr8_1:35395160-35395179 Msa1191260:intron 35.0%
TTCGGTTAAACGTAGTAACT+CGG - chr8_1:35395280-35395299 Msa1191260:CDS 35.0%
TTGACGAAAGATATACAGGT+TGG + chr8_1:35395343-35395362 None:intergenic 35.0%
TCAGATTGCAGAAAATCCTT+TGG + chr8_1:35395603-35395622 None:intergenic 35.0%
TCTGCTAACAATTTGACATG+CGG - chr8_1:35395627-35395646 Msa1191260:intron 35.0%
GTCATCTTTATGCAAGTAAG+CGG - chr8_1:35395823-35395842 Msa1191260:intron 35.0%
CTAACAATTAAACAGGGCTT+AGG + chr8_1:35395865-35395884 None:intergenic 35.0%
CTAAGCCCTGTTTAATTGTT+AGG - chr8_1:35395863-35395882 Msa1191260:intron 35.0%
! GCCATTGAGAAAAGAGTTTT+TGG - chr8_1:35396177-35396196 Msa1191260:intron 35.0%
! GCCAAAAACTCTTTTCTCAA+TGG + chr8_1:35396181-35396200 None:intergenic 35.0%
GTAAGTAATCTCATCATCCA+GGG + chr8_1:35396209-35396228 None:intergenic 35.0%
GGTTTAGTTAATGTTGTCCT+TGG - chr8_1:35396255-35396274 Msa1191260:intron 35.0%
! ATAGCAGGGATGAATGTTTT+TGG - chr8_1:35396280-35396299 Msa1191260:intron 35.0%
ATCCTGCAAAACAAGTGAAA+AGG + chr8_1:35396313-35396332 None:intergenic 35.0%
!!! TTTTCACTTGTTTTGCAGGA+TGG - chr8_1:35396312-35396331 Msa1191260:intron 35.0%
! TGGCTTCCCTTTAAAAATCT+TGG + chr8_1:35396361-35396380 None:intergenic 35.0%
!! TTAAGCTTTGTTTGAGAGCA+TGG - chr8_1:35396449-35396468 Msa1191260:intron 35.0%
!! TTTGTTTGAGAGCATGGTTT+TGG - chr8_1:35396455-35396474 Msa1191260:intron 35.0%
!!! CTTTTTTGAAAACTCACACG+AGG + chr8_1:35396524-35396543 None:intergenic 35.0%
GACTAATTACCTATCCAAAG+CGG - chr8_1:35396705-35396724 Msa1191260:intron 35.0%
! ATATACTTTCCGCTTTGGAT+AGG + chr8_1:35396717-35396736 None:intergenic 35.0%
CAGTTCAGAAACAATTTCAC+CGG - chr8_1:35396916-35396935 Msa1191260:intron 35.0%
ACTGAGAACTGTCATAAAAC+CGG + chr8_1:35396938-35396957 None:intergenic 35.0%
CGTGAGAAATATTTGAAGGA+TGG + chr8_1:35397072-35397091 None:intergenic 35.0%
AGGCTATGAACAAAGATGTT+AGG + chr8_1:35397098-35397117 None:intergenic 35.0%
ATATCAGTTAATTGTCGCGG+CGG + chr8_1:35391673-35391692 None:intergenic 40.0%
!! GGGATGTAATGGTCATTTTG+GGG - chr8_1:35391695-35391714 Msa1191260:three_prime_UTR 40.0%
!! GGATGTAATGGTCATTTTGG+GGG - chr8_1:35391696-35391715 Msa1191260:three_prime_UTR 40.0%
!! GATGTAATGGTCATTTTGGG+GGG - chr8_1:35391697-35391716 Msa1191260:three_prime_UTR 40.0%
!! ATGTAATGGTCATTTTGGGG+GGG - chr8_1:35391698-35391717 Msa1191260:three_prime_UTR 40.0%
CACTTGCAAAGCCATATCTA+TGG - chr8_1:35391819-35391838 Msa1191260:three_prime_UTR 40.0%
AAGGAACAAGTTTGGGTCAA+AGG - chr8_1:35391851-35391870 Msa1191260:three_prime_UTR 40.0%
AGGAACAAGTTTGGGTCAAA+GGG - chr8_1:35391852-35391871 Msa1191260:three_prime_UTR 40.0%
AGGAGAAGAGAGAAGAAAAG+CGG + chr8_1:35391956-35391975 None:intergenic 40.0%
GGGATGTTAAGAATTGAAGG+TGG - chr8_1:35392086-35392105 Msa1191260:three_prime_UTR 40.0%
GGAACTGGAACAAAGTGTAT+TGG - chr8_1:35392117-35392136 Msa1191260:three_prime_UTR 40.0%
! TTGCTAGAAGAGCTTTGATC+AGG - chr8_1:35392196-35392215 Msa1191260:three_prime_UTR 40.0%
CAAAATCACACAACCCATCA+AGG + chr8_1:35392768-35392787 None:intergenic 40.0%
GGTTAACGCAGTTCAGTTTA+TGG + chr8_1:35393210-35393229 None:intergenic 40.0%
GTTAATGCGGTTCAAATAGG+TGG + chr8_1:35393231-35393250 None:intergenic 40.0%
AGTTTCCAATCACAGACTCA+TGG - chr8_1:35393379-35393398 Msa1191260:CDS 40.0%
TGATGACAACTTAGCATTCG+AGG - chr8_1:35393686-35393705 Msa1191260:intron 40.0%
AATACACCTTGAGAAGTGGT+TGG - chr8_1:35393736-35393755 Msa1191260:intron 40.0%
TTCACTAGAGAGAGAAAAGG+AGG + chr8_1:35393815-35393834 None:intergenic 40.0%
AATTACCGTTGAACCTACCT+CGG + chr8_1:35393869-35393888 None:intergenic 40.0%
! CTTTGGAAAGTGTGCCTTTA+GGG - chr8_1:35393946-35393965 Msa1191260:intron 40.0%
! TTTGGAAAGTGTGCCTTTAG+GGG - chr8_1:35393947-35393966 Msa1191260:intron 40.0%
TTGAGCTGTAGAAGACTAGA+AGG - chr8_1:35394402-35394421 Msa1191260:intron 40.0%
! GAAAGGCAAAAGTACAGTGA+AGG + chr8_1:35394754-35394773 None:intergenic 40.0%
ATAGCACGTTGGAATGTTGT+TGG - chr8_1:35394864-35394883 Msa1191260:intron 40.0%
GGTTAGATGTGCTTAAACCA+AGG - chr8_1:35394894-35394913 Msa1191260:intron 40.0%
AACCAAGGTTGTTCTTGTCT+TGG - chr8_1:35394909-35394928 Msa1191260:intron 40.0%
TACCAAGACAAGAACAACCT+TGG + chr8_1:35394914-35394933 None:intergenic 40.0%
ATCAAACACTTTCGACACTG+AGG - chr8_1:35395009-35395028 Msa1191260:CDS 40.0%
TTCGACACTGAGGATCATAT+TGG - chr8_1:35395019-35395038 Msa1191260:CDS 40.0%
AACTCGGTTCATCTTATACC+AGG - chr8_1:35395296-35395315 Msa1191260:CDS 40.0%
!! ACTGATTTGCGAAAGACCAA+TGG + chr8_1:35395369-35395388 None:intergenic 40.0%
ATCTCCATTTCTTGTGAACC+AGG - chr8_1:35395466-35395485 Msa1191260:intron 40.0%
TACTTAATGTTCGACAGACC+TGG + chr8_1:35395487-35395506 None:intergenic 40.0%
GATTGCAGAAAATCCTTTGG+CGG + chr8_1:35395600-35395619 None:intergenic 40.0%
CTGCTAACAATTTGACATGC+GGG - chr8_1:35395628-35395647 Msa1191260:intron 40.0%
CATAAAGATGACTCCGTTGA+TGG + chr8_1:35395815-35395834 None:intergenic 40.0%
ATTAAACAGGGCTTAGGTCT+AGG + chr8_1:35395859-35395878 None:intergenic 40.0%
GGTAAGTAATCTCATCATCC+AGG + chr8_1:35396210-35396229 None:intergenic 40.0%
GATTACTTACCGAGAACTGA+AGG - chr8_1:35396219-35396238 Msa1191260:intron 40.0%
ATGTTGTCCTTGGATATAGC+AGG - chr8_1:35396265-35396284 Msa1191260:intron 40.0%
TGTTGTCCTTGGATATAGCA+GGG - chr8_1:35396266-35396285 Msa1191260:intron 40.0%
ATTCATCCCTGCTATATCCA+AGG + chr8_1:35396275-35396294 None:intergenic 40.0%
!!! CACCTTTTCACTTGTTTTGC+AGG - chr8_1:35396308-35396327 Msa1191260:intron 40.0%
TTCACGAACCAGTTGCTAAA+AGG + chr8_1:35396384-35396403 None:intergenic 40.0%
!!! TTTGAGAGCATGGTTTTGGA+GGG - chr8_1:35396459-35396478 Msa1191260:intron 40.0%
! TTCTCCAAAGTGCTCTGTTT+CGG - chr8_1:35396570-35396589 Msa1191260:intron 40.0%
GTCTATGTTTGGGAGTTAAG+AGG + chr8_1:35396688-35396707 None:intergenic 40.0%
GCGTAATATACTTTCCGCTT+TGG + chr8_1:35396722-35396741 None:intergenic 40.0%
!! CGGTGAAATTGTTTCTGAAC+TGG + chr8_1:35396918-35396937 None:intergenic 40.0%
TTGAGTAGCAAGTGCACTTA+GGG - chr8_1:35397336-35397355 Msa1191260:five_prime_UTR 40.0%
GTCTGTAGAGTGAACTCAAG+TGG + chr8_1:35391767-35391786 None:intergenic 45.0%
! CCTTGTGGTTTGCCTTTCTT+TGG + chr8_1:35391913-35391932 None:intergenic 45.0%
CCAAAGAAAGGCAAACCACA+AGG - chr8_1:35391910-35391929 Msa1191260:three_prime_UTR 45.0%
CTTCTCTCTTCTCCTTCCAA+TGG - chr8_1:35391961-35391980 Msa1191260:three_prime_UTR 45.0%
GAATTGAAGGTGGTTGCACT+TGG - chr8_1:35392096-35392115 Msa1191260:three_prime_UTR 45.0%
! CGTTCTCTTTTGCGTCCTTA+TGG - chr8_1:35392141-35392160 Msa1191260:three_prime_UTR 45.0%
! ACTATTATCCGTGTCGGTGT+CGG + chr8_1:35392308-35392327 None:intergenic 45.0%
! TATGAAGCACCAACACTCCT+CGG + chr8_1:35392426-35392445 None:intergenic 45.0%
CACTGACATAGACCCTTTCT+AGG - chr8_1:35393069-35393088 Msa1191260:intron 45.0%
AGCAACCATGAGTCTGTGAT+TGG + chr8_1:35393387-35393406 None:intergenic 45.0%
AGTGGGTGATGTGTACTTTG+TGG - chr8_1:35393432-35393451 Msa1191260:intron 45.0%
GTACTTTGTGGCTTCAACTG+CGG - chr8_1:35393444-35393463 Msa1191260:intron 45.0%
!! CTAGGTGCAGATTTGCTACT+TGG + chr8_1:35393639-35393658 None:intergenic 45.0%
AGCAAATCTGCACCTAGCAA+TGG - chr8_1:35393642-35393661 Msa1191260:CDS 45.0%
CACCTAGCAATGGAGCAAAA+CGG - chr8_1:35393652-35393671 Msa1191260:intron 45.0%
! AACCGTTTTGCTCCATTGCT+AGG + chr8_1:35393657-35393676 None:intergenic 45.0%
TGACAACTTAGCATTCGAGG+TGG - chr8_1:35393689-35393708 Msa1191260:intron 45.0%
!! ACGAAGGGTGTCTTGACAAA+CGG - chr8_1:35393712-35393731 Msa1191260:intron 45.0%
CGGAAATACACCTTGAGAAG+TGG - chr8_1:35393732-35393751 Msa1191260:intron 45.0%
GAGAAAAGGAGGCGAAAATG+AGG + chr8_1:35393804-35393823 None:intergenic 45.0%
CCTCGGATAGTAACAAAGGA+AGG + chr8_1:35393852-35393871 None:intergenic 45.0%
CCTTCCTTTGTTACTATCCG+AGG - chr8_1:35393849-35393868 Msa1191260:intron 45.0%
CCTACCTCGGATAGTAACAA+AGG + chr8_1:35393856-35393875 None:intergenic 45.0%
CCTTTGTTACTATCCGAGGT+AGG - chr8_1:35393853-35393872 Msa1191260:intron 45.0%
ACTATCCGAGGTAGGTTCAA+CGG - chr8_1:35393861-35393880 Msa1191260:intron 45.0%
! CCTAAAGGCACACTTTCCAA+AGG + chr8_1:35393948-35393967 None:intergenic 45.0%
! CCTTTGGAAAGTGTGCCTTT+AGG - chr8_1:35393945-35393964 Msa1191260:intron 45.0%
! TTGGAAAGTGTGCCTTTAGG+GGG - chr8_1:35393948-35393967 Msa1191260:intron 45.0%
TGTGAACCATTTCCCCCTAA+AGG + chr8_1:35393963-35393982 None:intergenic 45.0%
AACAAATAGGGATGGTCCAG+AGG - chr8_1:35394793-35394812 Msa1191260:intron 45.0%
GTTCTGACAAGATAGCACGT+TGG - chr8_1:35394853-35394872 Msa1191260:intron 45.0%
TGGAATGTTGTTGGCGTTCA+AGG - chr8_1:35394873-35394892 Msa1191260:intron 45.0%
AAGTACGAAAGCAAAGCTCC+TGG + chr8_1:35395317-35395336 None:intergenic 45.0%
CAGACCTGGTTCACAAGAAA+TGG + chr8_1:35395473-35395492 None:intergenic 45.0%
! CATTTCACAGCCGCTATTTC+TGG - chr8_1:35395563-35395582 Msa1191260:intron 45.0%
AAAATCCTTTGGCGGTACAG+GGG + chr8_1:35395592-35395611 None:intergenic 45.0%
GAAAATCCTTTGGCGGTACA+GGG + chr8_1:35395593-35395612 None:intergenic 45.0%
AGAAAATCCTTTGGCGGTAC+AGG + chr8_1:35395594-35395613 None:intergenic 45.0%
GGCTTACATGAAGTCACTCT+TGG - chr8_1:35395743-35395762 Msa1191260:intron 45.0%
GAAGTCACTCTTGGAACTAC+TGG - chr8_1:35395752-35395771 Msa1191260:intron 45.0%
GGAACTACTGGAAGAAAGCA+AGG - chr8_1:35395764-35395783 Msa1191260:intron 45.0%
AAGCAAGGTACGTCTGCAAA+AGG - chr8_1:35395779-35395798 Msa1191260:intron 45.0%
AGCAAGGTACGTCTGCAAAA+GGG - chr8_1:35395780-35395799 Msa1191260:intron 45.0%
TTCCAGAAAGAGGCTGTTAG+AGG - chr8_1:35396147-35396166 Msa1191260:intron 45.0%
AACCTCTAACAGCCTCTTTC+TGG + chr8_1:35396152-35396171 None:intergenic 45.0%
AATCTCATCATCCAGGGACT+TGG + chr8_1:35396203-35396222 None:intergenic 45.0%
ACGAACCAGTTGCTAAAAGG+TGG + chr8_1:35396381-35396400 None:intergenic 45.0%
!! CAACTGGTTCGTGAAACCAT+TGG - chr8_1:35396389-35396408 Msa1191260:intron 45.0%
!!! GTTTGAGAGCATGGTTTTGG+AGG - chr8_1:35396458-35396477 Msa1191260:intron 45.0%
!! TTTTGGAGGGAAGGAGACTA+GGG - chr8_1:35396472-35396491 Msa1191260:intron 45.0%
! AAAGCCGAAACAGAGCACTT+TGG + chr8_1:35396577-35396596 None:intergenic 45.0%
CTTCCCTTTATACAAGGCGA+GGG - chr8_1:35396632-35396651 Msa1191260:intron 45.0%
TTCCCTTTATACAAGGCGAG+GGG - chr8_1:35396633-35396652 Msa1191260:intron 45.0%
AACCCCTCGCCTTGTATAAA+GGG + chr8_1:35396638-35396657 None:intergenic 45.0%
GTTTGGGAGTTAAGAGGAGA+GGG + chr8_1:35396682-35396701 None:intergenic 45.0%
TGTTTGGGAGTTAAGAGGAG+AGG + chr8_1:35396683-35396702 None:intergenic 45.0%
AACCGGTCTGTTTGGGAATT+GGG - chr8_1:35396847-35396866 Msa1191260:intron 45.0%
TTGGGAATTGGGCATATGTC+CGG - chr8_1:35396858-35396877 Msa1191260:intron 45.0%
TGGTAGTTGAATGTGCCATC+CGG - chr8_1:35397125-35397144 Msa1191260:five_prime_UTR 45.0%
!! CTAATGGGTTGTGCAACTTC+CGG + chr8_1:35397147-35397166 None:intergenic 45.0%
!! TGATTCGTACCGGCTATCAT+AGG - chr8_1:35397290-35397309 Msa1191260:five_prime_UTR 45.0%
GTTGAGTAGCAAGTGCACTT+AGG - chr8_1:35397335-35397354 Msa1191260:five_prime_UTR 45.0%
!!! TAAAATTTAAACTTTTTATT+TGG - chr8_1:35392065-35392084 Msa1191260:three_prime_UTR 5.0%
!!! AAAATTTAAACTTTTTATTT+GGG - chr8_1:35392066-35392085 Msa1191260:three_prime_UTR 5.0%
!!! GTCATTTTGGGGGGGTGTTA+GGG - chr8_1:35391706-35391725 Msa1191260:three_prime_UTR 50.0%
! AGGCCGTGAAGTCACTGTTT+TGG - chr8_1:35391930-35391949 Msa1191260:three_prime_UTR 50.0%
CGGCCAAAACAGTGACTTCA+CGG + chr8_1:35391936-35391955 None:intergenic 50.0%
AAGGTGGTTGCACTTGGAAC+TGG - chr8_1:35392102-35392121 Msa1191260:three_prime_UTR 50.0%
TACGTGTGTCGTGTCAGTGT+CGG - chr8_1:35392358-35392377 Msa1191260:three_prime_UTR 50.0%
! ACACCTAAACCGAGGAGTGT+TGG - chr8_1:35392414-35392433 Msa1191260:three_prime_UTR 50.0%
TTAGCATTCGAGGTGGACGA+AGG - chr8_1:35393696-35393715 Msa1191260:intron 50.0%
TAGCATTCGAGGTGGACGAA+GGG - chr8_1:35393697-35393716 Msa1191260:intron 50.0%
! AGTGTGCCTTTAGGGGGAAA+TGG - chr8_1:35393954-35393973 Msa1191260:intron 50.0%
GCAAGGTACGTCTGCAAAAG+GGG - chr8_1:35395781-35395800 Msa1191260:intron 50.0%
!! AGGGGCACTCTATCCATCAA+CGG - chr8_1:35395799-35395818 Msa1191260:intron 50.0%
!!! AGAGTTTTTGGCCAAGTCCC+TGG - chr8_1:35396189-35396208 Msa1191260:intron 50.0%
! GGAAGCCACCTTTTAGCAAC+TGG - chr8_1:35396373-35396392 Msa1191260:intron 50.0%
CGTGAAACCATTGGACTGTG+AGG - chr8_1:35396398-35396417 Msa1191260:intron 50.0%
!!! AGAGCATGGTTTTGGAGGGA+AGG - chr8_1:35396463-35396482 Msa1191260:intron 50.0%
!!! GTTTTGGAGGGAAGGAGACT+AGG - chr8_1:35396471-35396490 Msa1191260:intron 50.0%
TTTGGAGGGAAGGAGACTAG+GGG - chr8_1:35396473-35396492 Msa1191260:intron 50.0%
CCTCGCCTTGTATAAAGGGA+AGG + chr8_1:35396634-35396653 None:intergenic 50.0%
CCTTCCCTTTATACAAGGCG+AGG - chr8_1:35396631-35396650 Msa1191260:intron 50.0%
CAACCCCTCGCCTTGTATAA+AGG + chr8_1:35396639-35396658 None:intergenic 50.0%
GGAGTTAAGAGGAGAGGGAA+GGG + chr8_1:35396677-35396696 None:intergenic 50.0%
GAAATCTGGATTGCACCGTC+TGG - chr8_1:35396821-35396840 Msa1191260:intron 50.0%
! ATTGCACCGTCTGGTTCAAC+CGG - chr8_1:35396830-35396849 Msa1191260:intron 50.0%
AACAGACCGGTTGAACCAGA+CGG + chr8_1:35396839-35396858 None:intergenic 50.0%
! TCTGGTTCAACCGGTCTGTT+TGG - chr8_1:35396839-35396858 Msa1191260:intron 50.0%
CTGGTTCAACCGGTCTGTTT+GGG - chr8_1:35396840-35396859 Msa1191260:intron 50.0%
CAACCGGTCTGTTTGGGAAT+TGG - chr8_1:35396846-35396865 Msa1191260:intron 50.0%
TGCCCAATTCCCAAACAGAC+CGG + chr8_1:35396852-35396871 None:intergenic 50.0%
TTGTTCATAGCCTCGACGCA+TGG - chr8_1:35397105-35397124 Msa1191260:five_prime_UTR 50.0%
CATTCAACTACCATGCGTCG+AGG + chr8_1:35397118-35397137 None:intergenic 50.0%
!! GGTTTTGTGCCGTTGCGTTC+TGG + chr8_1:35391649-35391668 None:intergenic 55.0%
TCAGTTAATTGTCGCGGCGG+CGG + chr8_1:35391670-35391689 None:intergenic 55.0%
!!! GGTCATTTTGGGGGGGTGTT+AGG - chr8_1:35391705-35391724 Msa1191260:three_prime_UTR 55.0%
ACAGTGACTTCACGGCCTTG+TGG + chr8_1:35391928-35391947 None:intergenic 55.0%
TCCTCGGTTTAGGTGTGTCC+CGG + chr8_1:35392410-35392429 None:intergenic 55.0%
GCACCAACACTCCTCGGTTT+AGG + chr8_1:35392420-35392439 None:intergenic 55.0%
GAGCTCGCTTGTCACTCCTT+TGG - chr8_1:35393929-35393948 Msa1191260:intron 55.0%
ACAGGGGCAGCCAGAAATAG+CGG + chr8_1:35395576-35395595 None:intergenic 55.0%
GGGAATGCCTCACAGTCCAA+TGG + chr8_1:35396408-35396427 None:intergenic 55.0%
GGGAGTTAAGAGGAGAGGGA+AGG + chr8_1:35396678-35396697 None:intergenic 55.0%
TGGGTTGTGCAACTTCCGGA+TGG + chr8_1:35397143-35397162 None:intergenic 55.0%
!! ACGAAGCACCGACACCGACA+CGG - chr8_1:35392297-35392316 Msa1191260:three_prime_UTR 60.0%
GTCAGACACCGACGCGTGTT+TGG - chr8_1:35392382-35392401 Msa1191260:three_prime_UTR 60.0%
ACCGGGACACACCTAAACCG+AGG - chr8_1:35392406-35392425 Msa1191260:three_prime_UTR 60.0%
AGGGTTGTATCGCCACGACC+TGG + chr8_1:35394822-35394841 None:intergenic 60.0%
GAGGGAAGGAGACTAGGGGA+GGG - chr8_1:35396477-35396496 Msa1191260:intron 60.0%
CACCGACGCGTGTTTGGCAC+CGG - chr8_1:35392388-35392407 Msa1191260:three_prime_UTR 65.0%
ACCGACGCGTGTTTGGCACC+GGG - chr8_1:35392389-35392408 Msa1191260:three_prime_UTR 65.0%
! TCCCGGTGCCAAACACGCGT+CGG + chr8_1:35392393-35392412 None:intergenic 65.0%
GGGATGGTCCAGAGGAAGCC+AGG - chr8_1:35394801-35394820 Msa1191260:intron 65.0%
GTCCAGAGGAAGCCAGGTCG+TGG - chr8_1:35394807-35394826 Msa1191260:intron 65.0%
GGAGGGAAGGAGACTAGGGG+AGG - chr8_1:35396476-35396495 Msa1191260:intron 65.0%
CGCCACGACCTGGCTTCCTC+TGG + chr8_1:35394812-35394831 None:intergenic 70.0%
GGCTGCCCCTGTACCGCCAA+AGG - chr8_1:35395584-35395603 Msa1191260:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 35391616 35397366 35391616 ID=Msa1191260;Name=Msa1191260
chr8_1 mRNA 35391616 35397366 35391616 ID=Msa1191260-mRNA-1;Parent=Msa1191260;Name=Msa1191260-mRNA-1;_AED=0.17;_eAED=0.17;_QI=364|0.87|1|1|0.75|0.88|9|926|311
chr8_1 exon 35391616 35392652 35391616 ID=Msa1191260-mRNA-1:exon:11752;Parent=Msa1191260-mRNA-1
chr8_1 exon 35392742 35392829 35392742 ID=Msa1191260-mRNA-1:exon:11751;Parent=Msa1191260-mRNA-1
chr8_1 exon 35393145 35393264 35393145 ID=Msa1191260-mRNA-1:exon:11750;Parent=Msa1191260-mRNA-1
chr8_1 exon 35393333 35393409 35393333 ID=Msa1191260-mRNA-1:exon:11749;Parent=Msa1191260-mRNA-1
chr8_1 exon 35393495 35393664 35393495 ID=Msa1191260-mRNA-1:exon:11748;Parent=Msa1191260-mRNA-1
chr8_1 exon 35394088 35394201 35394088 ID=Msa1191260-mRNA-1:exon:11747;Parent=Msa1191260-mRNA-1
chr8_1 exon 35394989 35395069 35394989 ID=Msa1191260-mRNA-1:exon:11746;Parent=Msa1191260-mRNA-1
chr8_1 exon 35395193 35395364 35395193 ID=Msa1191260-mRNA-1:exon:11745;Parent=Msa1191260-mRNA-1
chr8_1 exon 35397000 35397366 35397000 ID=Msa1191260-mRNA-1:exon:11744;Parent=Msa1191260-mRNA-1
chr8_1 five_prime_UTR 35397003 35397366 35397003 ID=Msa1191260-mRNA-1:five_prime_utr;Parent=Msa1191260-mRNA-1
chr8_1 CDS 35397000 35397002 35397000 ID=Msa1191260-mRNA-1:cds;Parent=Msa1191260-mRNA-1
chr8_1 CDS 35395193 35395364 35395193 ID=Msa1191260-mRNA-1:cds;Parent=Msa1191260-mRNA-1
chr8_1 CDS 35394989 35395069 35394989 ID=Msa1191260-mRNA-1:cds;Parent=Msa1191260-mRNA-1
chr8_1 CDS 35394088 35394201 35394088 ID=Msa1191260-mRNA-1:cds;Parent=Msa1191260-mRNA-1
chr8_1 CDS 35393495 35393664 35393495 ID=Msa1191260-mRNA-1:cds;Parent=Msa1191260-mRNA-1
chr8_1 CDS 35393333 35393409 35393333 ID=Msa1191260-mRNA-1:cds;Parent=Msa1191260-mRNA-1
chr8_1 CDS 35393145 35393264 35393145 ID=Msa1191260-mRNA-1:cds;Parent=Msa1191260-mRNA-1
chr8_1 CDS 35392742 35392829 35392742 ID=Msa1191260-mRNA-1:cds;Parent=Msa1191260-mRNA-1
chr8_1 CDS 35392542 35392652 35392542 ID=Msa1191260-mRNA-1:cds;Parent=Msa1191260-mRNA-1
chr8_1 three_prime_UTR 35391616 35392541 35391616 ID=Msa1191260-mRNA-1:three_prime_utr;Parent=Msa1191260-mRNA-1
Gene Sequence

>Msa1191260

ATGATTCAATATCTATCTGAACCAAGTAGCAAATCTGCACCTAGCAATGGAGCAAAACGGTTCAAAGTTGATGATGACAACTTAGCATTCGAGGTGGACGAAGGGTGTCTTGACAAACGGAAATACACCTTGAGAAGTGGTTGGAAATTACATATGTATATATCACAGTTACCATGTGGAGATGCTTCACTGAGCTCGCTTGTCACTCCTTTGGAAAGTGTGCCTTTAGGGGGAAATGGTTCACATTCATCATTAGCTAATAGCTCAAAACAAATAGGGATGGTCCAGAGGAAGCCAGGTCGTGGCGATACAACCCTATCAGTTAGTTGTTCTGACAAGATAGCACGTTGGAATGTTGTTGGCGTTCAAGGAGCTTTGCTTTCGTACTTTCTCCAACCTGTATATCTTTCGTCAATTACCATTGGTCTTTCGCAAATCAGTCCTGAAAATTTTCATTTCGAGGATAACTTGAAAAGAGCTTTGTATGATCGTATCGTAAACTTGAAGAATGAGCTAACATCTCCATTTCTTGTGAACCAGCCGCTATTTCTGGCTGCCCCTGTACCGCCAAAGGATTTTCTGCAATCTGAGAGTTCTGCTAACAATTTGACATGCGGGTATTCTATATGTTGGAATGAATGTGGCTTACATGAAGTCACTCTTGGAACTACTGGAAGAAAGCAAGGTACGTCTGCAAAAGGGGCACTCTATCCATCAACGGAGTCATCTTTATGCAAAAAGAGGCTGTTAGAGGTTTTCTTGCCATTGAGAAAAGAGTTTTTGGCCAAGTCCCTGGATGATGAGATTACTTACCGAGAACTGAAGGATGGTGCTGAAGAATATCATTTAGCTTCCAAGATTTTTAAAGGGAAGCCACCTTTTAGCAACTGGTTCGTGAAACCATTGGACTGTGAGGCATTCCCCATTTCAAAATAA
Protein sequence

>Msa1191260

MIQYLSEPSSKSAPSNGAKRFKVDDDNLAFEVDEGCLDKRKYTLRSGWKLHMYISQLPCGDASLSSLVTPLESVPLGGNGSHSSLANSSKQIGMVQRKPGRGDTTLSVSCSDKIARWNVVGVQGALLSYFLQPVYLSSITIGLSQISPENFHFEDNLKRALYDRIVNLKNELTSPFLVNQPLFLAAPVPPKDFLQSESSANNLTCGYSICWNECGLHEVTLGTTGRKQGTSAKGALYPSTESSLCKKRLLEVFLPLRKEFLAKSLDDEITYRELKDGAEEYHLASKIFKGKPPFSNWFVKPLDCEAFPISK*