AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1194070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1194070 MtrunA17_Chr8g0364901 91.406 384 33 0 1 384 1 384 0.0 693
Msa1194070 MtrunA17_Chr5g0413801 38.806 201 116 4 31 228 70 266 3.79e-35 135
Msa1194070 MtrunA17_Chr8g0364941 39.216 204 112 6 31 223 73 275 1.83e-33 130
Msa1194070 MtrunA17_Chr6g0451131 40.404 198 99 5 14 195 43 237 5.97e-32 126
Msa1194070 MtrunA17_Chr2g0315511 33.971 209 132 2 22 224 57 265 7.46e-32 125
Msa1194070 MtrunA17_Chr8g0359721 48.649 111 57 0 91 201 37 147 2.91e-28 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1194070 AT1G23890.2 52.632 285 129 4 13 296 10 289 1.66e-97 296
Msa1194070 AT1G23890.1 57.018 228 93 4 13 239 10 233 3.45e-87 265
Msa1194070 AT5G14890.1 35.217 230 141 4 31 258 75 298 4.31e-37 140
Msa1194070 AT1G70280.1 40.196 204 113 5 31 226 5 207 4.46e-36 137
Msa1194070 AT1G23880.2 39.801 201 114 4 31 228 5 201 4.89e-36 136
Msa1194070 AT1G23880.1 38.182 220 122 5 19 228 110 325 4.97e-36 138
Msa1194070 AT1G70280.2 40.196 204 113 5 31 226 67 269 9.10e-36 137
Msa1194070 AT3G14860.1 38.806 201 105 5 31 227 74 260 2.90e-34 132
Msa1194070 AT3G14860.2 38.806 201 105 5 31 227 74 260 3.18e-34 132

Find 107 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATCATCTGTGTCTAATT+TGG 0.111282 8_1:+41108311 Msa1194070:CDS
TCCTACCCTGTGTGCTTTAC+TGG 0.124774 8_1:+41107041 Msa1194070:CDS
GGCACCCTTTCCTTGGTTTA+AGG 0.124852 8_1:-41108247 None:intergenic
AAATCAACAGCAAAGCTTCT+AGG 0.227616 8_1:-41105911 None:intergenic
AACCTTCGGAAATTGGTAAT+TGG 0.244530 8_1:-41105703 None:intergenic
TGAAGAATGTTACTATCTTT+AGG 0.300782 8_1:-41108285 None:intergenic
CTTACATGAGGGATGATATA+AGG 0.320763 8_1:-41107801 None:intergenic
GCAGTTATGGCTTGGACTCT+AGG 0.333602 8_1:+41107729 Msa1194070:CDS
TCCTTGGTTTAAGGCTTCCT+TGG 0.337737 8_1:-41108238 None:intergenic
GAGGATGAGATCGGAGGAAA+TGG 0.342852 8_1:-41105648 None:intergenic
GAATCATCTGTGTCTAATTT+GGG 0.352233 8_1:+41108312 Msa1194070:CDS
TTCTCCAAGGCGGCCGCACT+TGG 0.358418 8_1:+41108098 Msa1194070:CDS
GACTCCAAGTGCGGCCGCCT+TGG 0.369068 8_1:-41108102 None:intergenic
AACAGGGCTTGGTGCAGTTA+TGG 0.370447 8_1:+41107716 Msa1194070:intron
GAAGCATTGCCAAACCAATC+TGG 0.371983 8_1:+41107936 Msa1194070:CDS
CTAGGTGTTACCACAATTGC+TGG 0.377628 8_1:+41106937 Msa1194070:intron
CGGTACTAGCTTCCCCAGAT+TGG 0.384147 8_1:-41107950 None:intergenic
CTTCCTTGGTTGAATCCATT+AGG 0.384806 8_1:-41108224 None:intergenic
AGGTGAAAAGGAGGAGGAGA+TGG 0.392867 8_1:-41105431 None:intergenic
GGTGATGGTGTAACCTTCTT+CGG 0.393114 8_1:-41105570 None:intergenic
AAGGAAAGGGTGCCAGTGTT+AGG 0.396787 8_1:+41108256 Msa1194070:CDS
GGAATGTTTATGTTGCTGAT+AGG 0.397659 8_1:+41105939 Msa1194070:CDS
AACTCATCAAATCCTTCAAT+TGG 0.402759 8_1:-41108191 None:intergenic
GAGGAGATGGAGTGGAAGGA+AGG 0.403361 8_1:-41105418 None:intergenic
AAGGAGGAGGATTGTACCCT+TGG 0.405780 8_1:+41107105 Msa1194070:CDS
TGTACCCTTGGATCTAAATC+TGG 0.418838 8_1:+41107117 Msa1194070:CDS
GATTTAGATGCTTACAATAG+TGG 0.423057 8_1:+41108138 Msa1194070:CDS
CTAGCTTCCCCAGATTGGTT+TGG 0.426878 8_1:-41107945 None:intergenic
GGCTTGGTGCAGTTATGGCT+TGG 0.430697 8_1:+41107721 Msa1194070:CDS
GCTTCCATGTCGCGGTGAAA+TGG 0.431149 8_1:-41107918 None:intergenic
TAACACTGGCACCCTTTCCT+TGG 0.431837 8_1:-41108254 None:intergenic
GTGATGGTGTAACCTTCTTC+GGG 0.438684 8_1:-41105569 None:intergenic
GGTCCATCAGATTAATTTGA+AGG 0.441933 8_1:+41107086 Msa1194070:CDS
GAGATGGAGTGGAAGGAAGG+TGG 0.449513 8_1:-41105415 None:intergenic
GGTTGTTGGTGAATGGAGTA+AGG 0.450990 8_1:-41105626 None:intergenic
AATTAATCTGATGGACCAAC+TGG 0.451149 8_1:-41107080 None:intergenic
ATAAGGAAAATCAGTACTAA+TGG 0.452159 8_1:+41105974 Msa1194070:CDS
AAGCTTGTGACCGTCGAGTA+TGG 0.452191 8_1:-41105594 None:intergenic
TGTATACTCGGCTTAGTGAT+TGG 0.452307 8_1:+41107765 Msa1194070:CDS
TTACATGAGGGATGATATAA+GGG 0.453303 8_1:-41107800 None:intergenic
ATGGTGATGTGGGTTTAGCT+AGG 0.455276 8_1:+41105879 Msa1194070:CDS
TGCTAGCTGCAGTTGCTCCT+CGG 0.455591 8_1:+41108002 Msa1194070:CDS
GGAAATGGGTTGTTGGTGAA+TGG 0.464336 8_1:-41105633 None:intergenic
GAGAGAGGAAGGTGAAAAGG+AGG 0.465701 8_1:-41105440 None:intergenic
TCACGATCGCAATGAGACTT+TGG 0.466988 8_1:+41108028 Msa1194070:CDS
CAGTTATGGCTTGGACTCTA+GGG 0.467711 8_1:+41107730 Msa1194070:CDS
AAGCATTGCCAAACCAATCT+GGG 0.477992 8_1:+41107937 Msa1194070:CDS
GGAGGAGGAGATGGAGTGGA+AGG 0.478918 8_1:-41105422 None:intergenic
GGAGAGAGAGGAAGGTGAAA+AGG 0.482180 8_1:-41105443 None:intergenic
ATAGGTTTAACCAGGTGATA+AGG 0.487420 8_1:+41105957 Msa1194070:CDS
AAAAGGAGGAGGAGATGGAG+TGG 0.487474 8_1:-41105426 None:intergenic
AGAGGAAGGTGAAAAGGAGG+AGG 0.487550 8_1:-41105437 None:intergenic
TCAGATTAATTTGAAGGAGG+AGG 0.492054 8_1:+41107092 Msa1194070:CDS
TGGAGTGGAAGGAAGGTGGA+AGG 0.503751 8_1:-41105411 None:intergenic
AGGATGAGATCGGAGGAAAT+GGG 0.513437 8_1:-41105647 None:intergenic
TTCACCTTCCTCTCTCTCCA+CGG 0.517017 8_1:+41105447 Msa1194070:CDS
CCTCCTTCAAATTAATCTGA+TGG 0.522306 8_1:-41107089 None:intergenic
ACCAAGGAAGCCTTAAACCA+AGG 0.524271 8_1:+41108237 Msa1194070:CDS
GAAAGTTACCGTGGAGAGAG+AGG 0.526353 8_1:-41105455 None:intergenic
TGAAGATCCTCCAGCAATTG+TGG 0.527993 8_1:-41106947 None:intergenic
AAGTGCTGTTTGTAGAATCA+AGG 0.531120 8_1:-41105670 None:intergenic
GATCGGAGGAAATGGGTTGT+TGG 0.531775 8_1:-41105640 None:intergenic
AAGATCGTCATTCCCGAAGA+AGG 0.534403 8_1:+41105557 Msa1194070:CDS
GAAGGTGGAAGGAGAAGACA+TGG 0.548627 8_1:-41105400 None:intergenic
GTTACCGTGGAGAGAGAGGA+AGG 0.550486 8_1:-41105451 None:intergenic
TTCAGAAAAGTCAAGCATCA+AGG 0.550620 8_1:+41106966 Msa1194070:CDS
CGCGGTGAAATGGTAACGGC+TGG 0.563592 8_1:-41107908 None:intergenic
GAAGCCTTAAACCAAGGAAA+GGG 0.571093 8_1:+41108243 Msa1194070:CDS
TGTTGCTGATAGGTTTAACC+AGG 0.574625 8_1:+41105949 Msa1194070:CDS
TTGATGCCGGAGTAGAGTGT+CGG 0.576767 8_1:-41107970 None:intergenic
TTATTACTATCATGTATACT+CGG 0.581002 8_1:+41107753 Msa1194070:CDS
GGAAGCCTTAAACCAAGGAA+AGG 0.583343 8_1:+41108242 Msa1194070:CDS
GTTGTTGGTGAATGGAGTAA+GGG 0.583971 8_1:-41105625 None:intergenic
TTCGGAAATTGGTAATTGGA+CGG 0.584809 8_1:-41105699 None:intergenic
ATATTGACTTCGTTTCTCCA+AGG 0.587495 8_1:+41108085 Msa1194070:CDS
ACATCACCATCATCATATCC+AGG 0.589286 8_1:-41105866 None:intergenic
CTAATTTGGGAATTGTGAAG+AGG 0.589435 8_1:+41108325 Msa1194070:CDS
GAAAAGTCAAGCATCAAGGA+TGG 0.589681 8_1:+41106970 Msa1194070:CDS
AGAATCAAGGAGGATGAGAT+CGG 0.591699 8_1:-41105657 None:intergenic
GTTACCATTTCACCGCGACA+TGG 0.594639 8_1:+41107914 Msa1194070:CDS
TGGATATGATGATGGTGATG+TGG 0.596513 8_1:+41105868 Msa1194070:CDS
CTCACCAGATTTAGATCCAA+GGG 0.603017 8_1:-41107121 None:intergenic
ACCGTCGAGTATGGTGGTGA+TGG 0.607226 8_1:-41105585 None:intergenic
GTCCAATTACCAATTTCCGA+AGG 0.608293 8_1:+41105701 Msa1194070:CDS
TCTCACCAGATTTAGATCCA+AGG 0.612143 8_1:-41107122 None:intergenic
GTCAGATCATCAGCACCAGT+TGG 0.621134 8_1:+41107065 Msa1194070:CDS
CCATCAGATTAATTTGAAGG+AGG 0.625341 8_1:+41107089 Msa1194070:CDS
ATGTCGCGGTGAAATGGTAA+CGG 0.625383 8_1:-41107912 None:intergenic
GGGTCACCTGGATATGATGA+TGG 0.628143 8_1:+41105860 Msa1194070:CDS
GGATATGATGATGGTGATGT+GGG 0.633332 8_1:+41105869 Msa1194070:CDS
TTGGCAATGCTTCCATGTCG+CGG 0.636895 8_1:-41107926 None:intergenic
TTTAGGTCTGATCCTAACAC+TGG 0.638808 8_1:-41108268 None:intergenic
ACCATCACCACCATACTCGA+CGG 0.641784 8_1:+41105584 Msa1194070:CDS
CTAGTACCGACACTCTACTC+CGG 0.652615 8_1:+41107964 Msa1194070:CDS
TTGACTTCGTTTCTCCAAGG+CGG 0.661348 8_1:+41108088 Msa1194070:CDS
ATCAAGGAGGATGAGATCGG+AGG 0.662340 8_1:-41105654 None:intergenic
AGCATTGCCAAACCAATCTG+GGG 0.675300 8_1:+41107938 Msa1194070:CDS
CTTGTGACCGTCGAGTATGG+TGG 0.680076 8_1:-41105591 None:intergenic
ACCAGTAAAGCACACAGGGT+AGG 0.681467 8_1:-41107042 None:intergenic
CTGACACCAGTAAAGCACAC+AGG 0.684231 8_1:-41107047 None:intergenic
TGACACCAGTAAAGCACACA+GGG 0.684722 8_1:-41107046 None:intergenic
ACACCTAATGGATTCAACCA+AGG 0.685789 8_1:+41108221 Msa1194070:CDS
CATGAGGGATGATATAAGGG+CGG 0.692772 8_1:-41107797 None:intergenic
TGCTGTTTGTAGAATCAAGG+AGG 0.696355 8_1:-41105667 None:intergenic
GGTGTTACCACAATTGCTGG+AGG 0.701163 8_1:+41106940 Msa1194070:intron
AAAGACACAGACTCCAAGTG+CGG 0.701948 8_1:-41108111 None:intergenic
CATTGCGATCGTGAAAACCG+AGG 0.724193 8_1:-41108019 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATGATATTAATTTCAA+AGG - chr8_1:41107369-41107388 None:intergenic 10.0%
!! TTAATAAAAATATCATTAGT+AGG + chr8_1:41107386-41107405 Msa1194070:intron 10.0%
!!! ATCTAGATAAATTTTAATAA+GGG + chr8_1:41107498-41107517 Msa1194070:intron 10.0%
!! AAAAAAAAAAGAAAAACCTT+CGG - chr8_1:41105720-41105739 None:intergenic 15.0%
!!! TAAAGTTTTGATTTTTTTGT+TGG + chr8_1:41105766-41105785 Msa1194070:intron 15.0%
!!! TATGTTAATTAGTTCTATTT+TGG + chr8_1:41106086-41106105 Msa1194070:intron 15.0%
!! ATTTATCTAAGAAAAATTTG+AGG - chr8_1:41106159-41106178 None:intergenic 15.0%
!!! GATCTAGATAAATTTTAATA+AGG + chr8_1:41107497-41107516 Msa1194070:intron 15.0%
!! AAAATGAAAAATGAGAGAAA+GGG - chr8_1:41105492-41105511 None:intergenic 20.0%
!! CTAATCTTTCTATGAAATTT+AGG - chr8_1:41106458-41106477 None:intergenic 20.0%
!!! GAATCTTTGTAATTTTAAGA+TGG + chr8_1:41106851-41106870 Msa1194070:intron 20.0%
!!! TTGTAAAATTTTGATTTTGC+TGG + chr8_1:41107316-41107335 Msa1194070:intron 20.0%
!!! TGTAAAATTTTGATTTTGCT+GGG + chr8_1:41107317-41107336 Msa1194070:intron 20.0%
!! TATGATATTAATTTCAAAGG+TGG - chr8_1:41107366-41107385 None:intergenic 20.0%
!! TATCATTTCAAAGATTAAGA+TGG - chr8_1:41107641-41107660 None:intergenic 20.0%
!! TTATTACTATCATGTATACT+CGG + chr8_1:41107753-41107772 Msa1194070:CDS 20.0%
!! AAAAATCTTCATAAGAAGAT+GGG - chr8_1:41107832-41107851 None:intergenic 20.0%
!! AAAAAATCTTCATAAGAAGA+TGG - chr8_1:41107833-41107852 None:intergenic 20.0%
! AAATGAAAAATGAGAGAAAG+GGG - chr8_1:41105491-41105510 None:intergenic 25.0%
! GAAAATGAAAAATGAGAGAA+AGG - chr8_1:41105493-41105512 None:intergenic 25.0%
!!! TTTTATGCTTTTTTGCTTTC+TGG + chr8_1:41105736-41105755 Msa1194070:intron 25.0%
!!! TTTATGCTTTTTTGCTTTCT+GGG + chr8_1:41105737-41105756 Msa1194070:intron 25.0%
! ATAAGGAAAATCAGTACTAA+TGG + chr8_1:41105974-41105993 Msa1194070:CDS 25.0%
! CATATAAAGTTTCAGTCTTT+AGG + chr8_1:41106036-41106055 Msa1194070:intron 25.0%
!! AGTCTTTAGGTTTATGAAAT+TGG + chr8_1:41106049-41106068 Msa1194070:intron 25.0%
! TTAGGTTTATGAAATTGGTT+TGG + chr8_1:41106054-41106073 Msa1194070:intron 25.0%
!!! TTTATGAAATTGGTTTGGAA+TGG + chr8_1:41106059-41106078 Msa1194070:intron 25.0%
!! ATTTTGGATGTATAGTTGTA+TGG + chr8_1:41106102-41106121 Msa1194070:intron 25.0%
!! TTTTGGATGTATAGTTGTAT+GGG + chr8_1:41106103-41106122 Msa1194070:intron 25.0%
!! TGATGTATTTTTCTAATTCG+AGG - chr8_1:41106214-41106233 None:intergenic 25.0%
! CGAATTAGAAAAATACATCA+TGG + chr8_1:41106214-41106233 Msa1194070:intron 25.0%
!! CTAATTTGCATGTGAAATTA+AGG + chr8_1:41106357-41106376 Msa1194070:intron 25.0%
!! ATGTGAAATTAAGGTTTTCT+AGG + chr8_1:41106366-41106385 Msa1194070:intron 25.0%
!! TGTGAAATTAAGGTTTTCTA+GGG + chr8_1:41106367-41106386 Msa1194070:intron 25.0%
! ATGAAATTTAGGTCATCTTA+AGG - chr8_1:41106447-41106466 None:intergenic 25.0%
! AATGACCAAAATAGACAAAA+GGG - chr8_1:41106915-41106934 None:intergenic 25.0%
!! ATATAATTCCAGTTTGGTTT+AGG - chr8_1:41107556-41107575 None:intergenic 25.0%
! GCAATTATATAATTCCAGTT+TGG - chr8_1:41107562-41107581 None:intergenic 25.0%
!! AAAAGCTATCTCTTTTAAAC+AGG + chr8_1:41107699-41107718 Msa1194070:intron 25.0%
!! AAAGCTATCTCTTTTAAACA+GGG + chr8_1:41107700-41107719 Msa1194070:intron 25.0%
!!! CTTCTTATGAAGATTTTTTG+TGG + chr8_1:41107834-41107853 Msa1194070:intron 25.0%
!!! TAAGTATTTTGACCAATTGA+AGG + chr8_1:41108179-41108198 Msa1194070:CDS 25.0%
! TGAAGAATGTTACTATCTTT+AGG - chr8_1:41108288-41108307 None:intergenic 25.0%
AATGAAAAATGAGAGAAAGG+GGG - chr8_1:41105490-41105509 None:intergenic 30.0%
AAAGAAAAACCTTCGGAAAT+TGG - chr8_1:41105713-41105732 None:intergenic 30.0%
!!! TTATGCTTTTTTGCTTTCTG+GGG + chr8_1:41105738-41105757 Msa1194070:intron 30.0%
!! TTGCAGAAAATGTTTTCAAG+AGG + chr8_1:41105825-41105844 Msa1194070:intron 30.0%
!! AATGTTTTCAAGAGGTTTTC+TGG + chr8_1:41105833-41105852 Msa1194070:CDS 30.0%
! TCAGTACTAATGGTATGTTT+TGG + chr8_1:41105984-41106003 Msa1194070:intron 30.0%
AACAATCAACACAAACAAGA+TGG - chr8_1:41106012-41106031 None:intergenic 30.0%
! GAGAATTAGTTTGAGTGAAT+AGG + chr8_1:41106179-41106198 Msa1194070:intron 30.0%
!!! TAGGGATTATTTTTGCCAAT+AGG + chr8_1:41106385-41106404 Msa1194070:intron 30.0%
TCAATAATTGCAATTGTGCA+TGG - chr8_1:41106415-41106434 None:intergenic 30.0%
CCTCTAACAACTAAAGTTAA+CGG + chr8_1:41106536-41106555 Msa1194070:intron 30.0%
TATTAAATGCATTGTTGCTG+TGG + chr8_1:41106685-41106704 Msa1194070:intron 30.0%
GAGATTGATATTGAACATGT+GGG - chr8_1:41106791-41106810 None:intergenic 30.0%
AGAGATTGATATTGAACATG+TGG - chr8_1:41106792-41106811 None:intergenic 30.0%
!!! CTTTGTAATTTTAAGATGGC+TGG + chr8_1:41106855-41106874 Msa1194070:intron 30.0%
CAATGACCAAAATAGACAAA+AGG - chr8_1:41106916-41106935 None:intergenic 30.0%
TTATCTAGATCAAGTAACCA+CGG - chr8_1:41107488-41107507 None:intergenic 30.0%
CATTTCAAAGATTAAGATGG+AGG - chr8_1:41107638-41107657 None:intergenic 30.0%
TATAATAAGTGTCATAGTCG+TGG - chr8_1:41107675-41107694 None:intergenic 30.0%
TTACATGAGGGATGATATAA+GGG - chr8_1:41107803-41107822 None:intergenic 30.0%
CTACATAGTTCAGTTAGAAT+TGG - chr8_1:41107877-41107896 None:intergenic 30.0%
GATTTAGATGCTTACAATAG+TGG + chr8_1:41108138-41108157 Msa1194070:CDS 30.0%
AACTCATCAAATCCTTCAAT+TGG - chr8_1:41108194-41108213 None:intergenic 30.0%
AGAATCATCTGTGTCTAATT+TGG + chr8_1:41108311-41108330 Msa1194070:CDS 30.0%
GAATCATCTGTGTCTAATTT+GGG + chr8_1:41108312-41108331 Msa1194070:CDS 30.0%
!! AAGTGCTGTTTGTAGAATCA+AGG - chr8_1:41105673-41105692 None:intergenic 35.0%
! TTCGGAAATTGGTAATTGGA+CGG - chr8_1:41105702-41105721 None:intergenic 35.0%
! AACCTTCGGAAATTGGTAAT+TGG - chr8_1:41105706-41105725 None:intergenic 35.0%
!! TTCAAGAGGTTTTCTGGAAA+TGG + chr8_1:41105839-41105858 Msa1194070:CDS 35.0%
!! TCAAGAGGTTTTCTGGAAAT+GGG + chr8_1:41105840-41105859 Msa1194070:CDS 35.0%
AAATCAACAGCAAAGCTTCT+AGG - chr8_1:41105914-41105933 None:intergenic 35.0%
!!! AGCTTTGCTGTTGATTTTAG+AGG + chr8_1:41105917-41105936 Msa1194070:CDS 35.0%
!!! GCTTTGCTGTTGATTTTAGA+GGG + chr8_1:41105918-41105937 Msa1194070:CDS 35.0%
GGAATGTTTATGTTGCTGAT+AGG + chr8_1:41105939-41105958 Msa1194070:CDS 35.0%
ATAGGTTTAACCAGGTGATA+AGG + chr8_1:41105957-41105976 Msa1194070:CDS 35.0%
!!! TACTGATTTTCCTTATCACC+TGG - chr8_1:41105970-41105989 None:intergenic 35.0%
GTTTGAGTGAATAGGCAAAT+TGG + chr8_1:41106187-41106206 Msa1194070:intron 35.0%
!! TGATTCTGTTAACTTGTACC+AGG + chr8_1:41106263-41106282 Msa1194070:intron 35.0%
ATGCAAATTAGTTCCTAGTG+TGG - chr8_1:41106348-41106367 None:intergenic 35.0%
TGATGTCAGATCAACATATC+CGG + chr8_1:41106494-41106513 Msa1194070:intron 35.0%
CCGTTAACTTTAGTTGTTAG+AGG - chr8_1:41106539-41106558 None:intergenic 35.0%
TGCATTTACTAATTCGCGAA+AGG + chr8_1:41106575-41106594 Msa1194070:intron 35.0%
GCATTTACTAATTCGCGAAA+GGG + chr8_1:41106576-41106595 Msa1194070:intron 35.0%
! TACAACATGCTTTAGACACT+CGG + chr8_1:41106813-41106832 Msa1194070:intron 35.0%
TTTAGACACTCGGTTAACTT+GGG + chr8_1:41106823-41106842 Msa1194070:intron 35.0%
!!! GTCTATTTTGGTCATTGACT+AGG + chr8_1:41106919-41106938 Msa1194070:intron 35.0%
TTCAGAAAAGTCAAGCATCA+AGG + chr8_1:41106966-41106985 Msa1194070:CDS 35.0%
! AATTAATCTGATGGACCAAC+TGG - chr8_1:41107083-41107102 None:intergenic 35.0%
! GGTCCATCAGATTAATTTGA+AGG + chr8_1:41107086-41107105 Msa1194070:CDS 35.0%
CCTCCTTCAAATTAATCTGA+TGG - chr8_1:41107092-41107111 None:intergenic 35.0%
! CCATCAGATTAATTTGAAGG+AGG + chr8_1:41107089-41107108 Msa1194070:CDS 35.0%
! TCAGATTAATTTGAAGGAGG+AGG + chr8_1:41107092-41107111 Msa1194070:CDS 35.0%
! TGGTGAGAGTTTAGAATTTG+AGG + chr8_1:41107137-41107156 Msa1194070:intron 35.0%
CAATCATGTATATGATTCCG+TGG + chr8_1:41107468-41107487 Msa1194070:intron 35.0%
! TATCTCTTTTAAACAGGGCT+TGG + chr8_1:41107705-41107724 Msa1194070:intron 35.0%
CTTACATGAGGGATGATATA+AGG - chr8_1:41107804-41107823 None:intergenic 35.0%
!!! GAAGATTTTTTGTGGCAACA+TGG + chr8_1:41107842-41107861 Msa1194070:intron 35.0%
TCTAACTGAACTATGTAGAC+AGG + chr8_1:41107879-41107898 Msa1194070:intron 35.0%
!! ATATTGACTTCGTTTCTCCA+AGG + chr8_1:41108085-41108104 Msa1194070:CDS 35.0%
!! GAGTTTTGATGAACACCTAA+TGG + chr8_1:41108209-41108228 Msa1194070:CDS 35.0%
CTAATTTGGGAATTGTGAAG+AGG + chr8_1:41108325-41108344 Msa1194070:CDS 35.0%
TGTGAATAGGAAAGTTACCG+TGG - chr8_1:41105467-41105486 None:intergenic 40.0%
! GTTGTTGGTGAATGGAGTAA+GGG - chr8_1:41105628-41105647 None:intergenic 40.0%
AGAATCAAGGAGGATGAGAT+CGG - chr8_1:41105660-41105679 None:intergenic 40.0%
! TGCTGTTTGTAGAATCAAGG+AGG - chr8_1:41105670-41105689 None:intergenic 40.0%
GTCCAATTACCAATTTCCGA+AGG + chr8_1:41105701-41105720 Msa1194070:CDS 40.0%
ACATCACCATCATCATATCC+AGG - chr8_1:41105869-41105888 None:intergenic 40.0%
!! TGGATATGATGATGGTGATG+TGG + chr8_1:41105868-41105887 Msa1194070:CDS 40.0%
!! GGATATGATGATGGTGATGT+GGG + chr8_1:41105869-41105888 Msa1194070:CDS 40.0%
TGTTGCTGATAGGTTTAACC+AGG + chr8_1:41105949-41105968 Msa1194070:CDS 40.0%
!! TTCTGTTAACTTGTACCAGG+AGG + chr8_1:41106266-41106285 Msa1194070:intron 40.0%
!! TCTGTTAACTTGTACCAGGA+GGG + chr8_1:41106267-41106286 Msa1194070:intron 40.0%
TTGATGTGGGATCAGCATAA+AGG - chr8_1:41106320-41106339 None:intergenic 40.0%
! TAGTGTGGTCGTATTGATGT+GGG - chr8_1:41106333-41106352 None:intergenic 40.0%
! ATTGTGCATGGACTACCTAT+TGG - chr8_1:41106403-41106422 None:intergenic 40.0%
TTTACTAATTCGCGAAAGGG+AGG + chr8_1:41106579-41106598 Msa1194070:intron 40.0%
!! AGGGATAAGTTTCTAGCTCT+CGG - chr8_1:41106735-41106754 None:intergenic 40.0%
AGCTAGAAACTTATCCCTTG+TGG + chr8_1:41106737-41106756 Msa1194070:intron 40.0%
GGTATAGAACATCATCTGGT+GGG - chr8_1:41106770-41106789 None:intergenic 40.0%
TGTGGGTATAGAACATCATC+TGG - chr8_1:41106774-41106793 None:intergenic 40.0%
CTTTAGACACTCGGTTAACT+TGG + chr8_1:41106822-41106841 Msa1194070:intron 40.0%
! TTAGACACTCGGTTAACTTG+GGG + chr8_1:41106824-41106843 Msa1194070:intron 40.0%
! AGCGTCCCTTTTGTCTATTT+TGG + chr8_1:41106907-41106926 Msa1194070:intron 40.0%
GAAAAGTCAAGCATCAAGGA+TGG + chr8_1:41106970-41106989 Msa1194070:CDS 40.0%
! GACAAAGATGCATTTTGTGC+TGG - chr8_1:41106997-41107016 None:intergenic 40.0%
TGTACCCTTGGATCTAAATC+TGG + chr8_1:41107117-41107136 Msa1194070:CDS 40.0%
CTCACCAGATTTAGATCCAA+GGG - chr8_1:41107124-41107143 None:intergenic 40.0%
TCTCACCAGATTTAGATCCA+AGG - chr8_1:41107125-41107144 None:intergenic 40.0%
GTGTTCATCCTAAACCAAAC+TGG + chr8_1:41107545-41107564 Msa1194070:intron 40.0%
TGTATACTCGGCTTAGTGAT+TGG + chr8_1:41107765-41107784 Msa1194070:CDS 40.0%
GATGGGAGTAACTTACATGA+GGG - chr8_1:41107815-41107834 None:intergenic 40.0%
AGATGGGAGTAACTTACATG+AGG - chr8_1:41107816-41107835 None:intergenic 40.0%
! AAGCATTGCCAAACCAATCT+GGG + chr8_1:41107937-41107956 Msa1194070:CDS 40.0%
!! ACACCTAATGGATTCAACCA+AGG + chr8_1:41108221-41108240 Msa1194070:CDS 40.0%
CTTCCTTGGTTGAATCCATT+AGG - chr8_1:41108227-41108246 None:intergenic 40.0%
GAAGCCTTAAACCAAGGAAA+GGG + chr8_1:41108243-41108262 Msa1194070:CDS 40.0%
TTTAGGTCTGATCCTAACAC+TGG - chr8_1:41108271-41108290 None:intergenic 40.0%
AAGATCGTCATTCCCGAAGA+AGG + chr8_1:41105557-41105576 Msa1194070:CDS 45.0%
! GTGATGGTGTAACCTTCTTC+GGG - chr8_1:41105572-41105591 None:intergenic 45.0%
! GGTGATGGTGTAACCTTCTT+CGG - chr8_1:41105573-41105592 None:intergenic 45.0%
! GGTTGTTGGTGAATGGAGTA+AGG - chr8_1:41105629-41105648 None:intergenic 45.0%
!! GGAAATGGGTTGTTGGTGAA+TGG - chr8_1:41105636-41105655 None:intergenic 45.0%
AGGATGAGATCGGAGGAAAT+GGG - chr8_1:41105650-41105669 None:intergenic 45.0%
!! TTTTCTGGAAATGGGTCACC+TGG + chr8_1:41105848-41105867 Msa1194070:CDS 45.0%
! ATGGTGATGTGGGTTTAGCT+AGG + chr8_1:41105879-41105898 Msa1194070:CDS 45.0%
! CTAGTGTGGTCGTATTGATG+TGG - chr8_1:41106334-41106353 None:intergenic 45.0%
CACATCAATACGACCACACT+AGG + chr8_1:41106332-41106351 Msa1194070:intron 45.0%
! GCGAAAGGGAGGCAATATTT+TGG + chr8_1:41106590-41106609 Msa1194070:intron 45.0%
TCGGTGACACTGGAAATACT+TGG - chr8_1:41106716-41106735 None:intergenic 45.0%
GGGTATAGAACATCATCTGG+TGG - chr8_1:41106771-41106790 None:intergenic 45.0%
! CTAGGTGTTACCACAATTGC+TGG + chr8_1:41106937-41106956 Msa1194070:intron 45.0%
TGAAGATCCTCCAGCAATTG+TGG - chr8_1:41106950-41106969 None:intergenic 45.0%
TGACACCAGTAAAGCACACA+GGG - chr8_1:41107049-41107068 None:intergenic 45.0%
GAAATCAGTCAGTGCAGTGA+TGG - chr8_1:41107295-41107314 None:intergenic 45.0%
! CAGTTATGGCTTGGACTCTA+GGG + chr8_1:41107730-41107749 Msa1194070:CDS 45.0%
CATGAGGGATGATATAAGGG+CGG - chr8_1:41107800-41107819 None:intergenic 45.0%
ATGTCGCGGTGAAATGGTAA+CGG - chr8_1:41107915-41107934 None:intergenic 45.0%
!! GAAGCATTGCCAAACCAATC+TGG + chr8_1:41107936-41107955 Msa1194070:CDS 45.0%
AGCATTGCCAAACCAATCTG+GGG + chr8_1:41107938-41107957 Msa1194070:CDS 45.0%
! AGCAACTGCGTTTTTGATGC+CGG - chr8_1:41107986-41108005 None:intergenic 45.0%
TCACGATCGCAATGAGACTT+TGG + chr8_1:41108028-41108047 Msa1194070:CDS 45.0%
TTGACTTCGTTTCTCCAAGG+CGG + chr8_1:41108088-41108107 Msa1194070:CDS 45.0%
AAAGACACAGACTCCAAGTG+CGG - chr8_1:41108114-41108133 None:intergenic 45.0%
ACCAAGGAAGCCTTAAACCA+AGG + chr8_1:41108237-41108256 Msa1194070:CDS 45.0%
! TCCTTGGTTTAAGGCTTCCT+TGG - chr8_1:41108241-41108260 None:intergenic 45.0%
GGAAGCCTTAAACCAAGGAA+AGG + chr8_1:41108242-41108261 Msa1194070:CDS 45.0%
GAAGGTGGAAGGAGAAGACA+TGG - chr8_1:41105403-41105422 None:intergenic 50.0%
AAAAGGAGGAGGAGATGGAG+TGG - chr8_1:41105429-41105448 None:intergenic 50.0%
AGGTGAAAAGGAGGAGGAGA+TGG - chr8_1:41105434-41105453 None:intergenic 50.0%
AGAGGAAGGTGAAAAGGAGG+AGG - chr8_1:41105440-41105459 None:intergenic 50.0%
GAGAGAGGAAGGTGAAAAGG+AGG - chr8_1:41105443-41105462 None:intergenic 50.0%
GGAGAGAGAGGAAGGTGAAA+AGG - chr8_1:41105446-41105465 None:intergenic 50.0%
TTCACCTTCCTCTCTCTCCA+CGG + chr8_1:41105447-41105466 Msa1194070:CDS 50.0%
GAAAGTTACCGTGGAGAGAG+AGG - chr8_1:41105458-41105477 None:intergenic 50.0%
! GAGAGAAAGGGGGTGTGAAT+AGG - chr8_1:41105480-41105499 None:intergenic 50.0%
ACCATCACCACCATACTCGA+CGG + chr8_1:41105584-41105603 Msa1194070:CDS 50.0%
AAGCTTGTGACCGTCGAGTA+TGG - chr8_1:41105597-41105616 None:intergenic 50.0%
!! GATCGGAGGAAATGGGTTGT+TGG - chr8_1:41105643-41105662 None:intergenic 50.0%
GAGGATGAGATCGGAGGAAA+TGG - chr8_1:41105651-41105670 None:intergenic 50.0%
ATCAAGGAGGATGAGATCGG+AGG - chr8_1:41105657-41105676 None:intergenic 50.0%
GGGTCACCTGGATATGATGA+TGG + chr8_1:41105860-41105879 Msa1194070:CDS 50.0%
CTATGACGCGACACGTAAAC+CGG - chr8_1:41106516-41106535 None:intergenic 50.0%
!! TTTCTAGCTCTCGGTGACAC+TGG - chr8_1:41106726-41106745 None:intergenic 50.0%
TGGTGGGAGACATACCACAA+GGG - chr8_1:41106754-41106773 None:intergenic 50.0%
! GGTGTTACCACAATTGCTGG+AGG + chr8_1:41106940-41106959 Msa1194070:intron 50.0%
TCCTACCCTGTGTGCTTTAC+TGG + chr8_1:41107041-41107060 Msa1194070:CDS 50.0%
ACCAGTAAAGCACACAGGGT+AGG - chr8_1:41107045-41107064 None:intergenic 50.0%
CTGACACCAGTAAAGCACAC+AGG - chr8_1:41107050-41107069 None:intergenic 50.0%
GTCAGATCATCAGCACCAGT+TGG + chr8_1:41107065-41107084 Msa1194070:CDS 50.0%
AAGGAGGAGGATTGTACCCT+TGG + chr8_1:41107105-41107124 Msa1194070:CDS 50.0%
!! AACAGGGCTTGGTGCAGTTA+TGG + chr8_1:41107716-41107735 Msa1194070:intron 50.0%
! GCAGTTATGGCTTGGACTCT+AGG + chr8_1:41107729-41107748 Msa1194070:CDS 50.0%
GTTACCATTTCACCGCGACA+TGG + chr8_1:41107914-41107933 Msa1194070:CDS 50.0%
TTGGCAATGCTTCCATGTCG+CGG - chr8_1:41107929-41107948 None:intergenic 50.0%
! CTAGCTTCCCCAGATTGGTT+TGG - chr8_1:41107948-41107967 None:intergenic 50.0%
!! CTAGTACCGACACTCTACTC+CGG + chr8_1:41107964-41107983 Msa1194070:CDS 50.0%
TTGATGCCGGAGTAGAGTGT+CGG - chr8_1:41107973-41107992 None:intergenic 50.0%
CATTGCGATCGTGAAAACCG+AGG - chr8_1:41108022-41108041 None:intergenic 50.0%
GGCACCCTTTCCTTGGTTTA+AGG - chr8_1:41108250-41108269 None:intergenic 50.0%
TAACACTGGCACCCTTTCCT+TGG - chr8_1:41108257-41108276 None:intergenic 50.0%
!! AAGGAAAGGGTGCCAGTGTT+AGG + chr8_1:41108256-41108275 Msa1194070:CDS 50.0%
TGGAGTGGAAGGAAGGTGGA+AGG - chr8_1:41105414-41105433 None:intergenic 55.0%
GAGATGGAGTGGAAGGAAGG+TGG - chr8_1:41105418-41105437 None:intergenic 55.0%
GAGGAGATGGAGTGGAAGGA+AGG - chr8_1:41105421-41105440 None:intergenic 55.0%
GTTACCGTGGAGAGAGAGGA+AGG - chr8_1:41105454-41105473 None:intergenic 55.0%
! ACCGTCGAGTATGGTGGTGA+TGG - chr8_1:41105588-41105607 None:intergenic 55.0%
CTTGTGACCGTCGAGTATGG+TGG - chr8_1:41105594-41105613 None:intergenic 55.0%
CTGGTGGGAGACATACCACA+AGG - chr8_1:41106755-41106774 None:intergenic 55.0%
! GACACTCGGTTAACTTGGGG+TGG + chr8_1:41106827-41106846 Msa1194070:intron 55.0%
!! GGCTTGGTGCAGTTATGGCT+TGG + chr8_1:41107721-41107740 Msa1194070:CDS 55.0%
GCTTCCATGTCGCGGTGAAA+TGG - chr8_1:41107921-41107940 None:intergenic 55.0%
! CGGTACTAGCTTCCCCAGAT+TGG - chr8_1:41107953-41107972 None:intergenic 55.0%
TGCTAGCTGCAGTTGCTCCT+CGG + chr8_1:41108002-41108021 Msa1194070:CDS 55.0%
GGAGGAGGAGATGGAGTGGA+AGG - chr8_1:41105425-41105444 None:intergenic 60.0%
CGTCATGCTATCGTCCCTCC+TGG - chr8_1:41106284-41106303 None:intergenic 60.0%
!! CGCGGTGAAATGGTAACGGC+TGG - chr8_1:41107911-41107930 None:intergenic 60.0%
TTCTCCAAGGCGGCCGCACT+TGG + chr8_1:41108098-41108117 Msa1194070:CDS 65.0%
GACTCCAAGTGCGGCCGCCT+TGG - chr8_1:41108105-41108124 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 41105350 41108353 41105350 ID=Msa1194070;Name=Msa1194070
chr8_1 mRNA 41105350 41108353 41105350 ID=Msa1194070-mRNA-1;Parent=Msa1194070;Name=Msa1194070-mRNA-1;_AED=0.12;_eAED=0.12;_QI=52|0.8|0.83|1|1|1|6|0|384
chr8_1 exon 41105350 41105468 41105350 ID=Msa1194070-mRNA-1:exon:13244;Parent=Msa1194070-mRNA-1
chr8_1 exon 41105549 41105722 41105549 ID=Msa1194070-mRNA-1:exon:13245;Parent=Msa1194070-mRNA-1
chr8_1 exon 41105831 41105995 41105831 ID=Msa1194070-mRNA-1:exon:13246;Parent=Msa1194070-mRNA-1
chr8_1 exon 41106941 41107138 41106941 ID=Msa1194070-mRNA-1:exon:13247;Parent=Msa1194070-mRNA-1
chr8_1 exon 41107721 41107818 41107721 ID=Msa1194070-mRNA-1:exon:13248;Parent=Msa1194070-mRNA-1
chr8_1 exon 41107901 41108353 41107901 ID=Msa1194070-mRNA-1:exon:13249;Parent=Msa1194070-mRNA-1
chr8_1 five_prime_UTR 41105350 41105401 41105350 ID=Msa1194070-mRNA-1:five_prime_utr;Parent=Msa1194070-mRNA-1
chr8_1 CDS 41105402 41105468 41105402 ID=Msa1194070-mRNA-1:cds;Parent=Msa1194070-mRNA-1
chr8_1 CDS 41105549 41105722 41105549 ID=Msa1194070-mRNA-1:cds;Parent=Msa1194070-mRNA-1
chr8_1 CDS 41105831 41105995 41105831 ID=Msa1194070-mRNA-1:cds;Parent=Msa1194070-mRNA-1
chr8_1 CDS 41106941 41107138 41106941 ID=Msa1194070-mRNA-1:cds;Parent=Msa1194070-mRNA-1
chr8_1 CDS 41107721 41107818 41107721 ID=Msa1194070-mRNA-1:cds;Parent=Msa1194070-mRNA-1
chr8_1 CDS 41107901 41108353 41107901 ID=Msa1194070-mRNA-1:cds;Parent=Msa1194070-mRNA-1
Gene Sequence

>Msa1194070

ATGTCTTCTCCTTCCACCTTCCTTCCACTCCATCTCCTCCTCCTTTTCACCTTCCTCTCTCTCCACGTTCAAGCAAAGATCGTCATTCCCGAAGAAGGTTACACCATCACCACCATACTCGACGGTCACAAGCTTCACATAAACCCTTACTCCATTCACCAACAACCCATTTCCTCCGATCTCATCCTCCTTGATTCTACAAACAGCACTTTCTACACCGTCCAATTACCAATTTCCGAAGAAAATGTTTTCAAGAGGTTTTCTGGAAATGGGTCACCTGGATATGATGATGGTGATGTGGGTTTAGCTAGGTTTAATAAACCTAGAAGCTTTGCTGTTGATTTTAGAGGGAATGTTTATGTTGCTGATAGGTTTAACCAGGTGATAAGGAAAATCAGTACTAATGGTGTTACCACAATTGCTGGAGGATCTTCAGAAAAGTCAAGCATCAAGGATGGACCAGCACAAAATGCATCTTTGTCAAATGATTTCGAGCTAACTTTCATTCCTACCCTGTGTGCTTTACTGGTGTCAGATCATCAGCACCAGTTGGTCCATCAGATTAATTTGAAGGAGGAGGATTGTACCCTTGGATCTAAATCTGGGCTTGGTGCAGTTATGGCTTGGACTCTAGGGTTATTACTATCATGTATACTCGGCTTAGTGATTGGCATTGTGATCCGCCCTTATATCATCCCTCATGAACACACCAGCCGTTACCATTTCACCGCGACATGGAAGCATTGCCAAACCAATCTGGGGAAGCTAGTACCGACACTCTACTCCGGCATCAAAAACGCAGTTGCTAGCTGCAGTTGCTCCTCGGTTTTCACGATCGCAATGAGACTTTGGAAATTGAGTCTTTCTCTTCTTGTTCTTGTGTTTAATATTGACTTCGTTTCTCCAAGGCGGCCGCACTTGGAGTCTGTGTCTTTGCTAGATTTAGATGCTTACAATAGTGGTGAGATATCAAAGTCAAGTAAGTATTTTGACCAATTGAAGGATTTGATGAGTTTTGATGAACACCTAATGGATTCAACCAAGGAAGCCTTAAACCAAGGAAAGGGTGCCAGTGTTAGGATCAGACCTAAAGATAGTAACATTCTTCATCAAGAATCATCTGTGTCTAATTTGGGAATTGTGAAGAGGAGATGA

Protein sequence

>Msa1194070

MSSPSTFLPLHLLLLFTFLSLHVQAKIVIPEEGYTITTILDGHKLHINPYSIHQQPISSDLILLDSTNSTFYTVQLPISEENVFKRFSGNGSPGYDDGDVGLARFNKPRSFAVDFRGNVYVADRFNQVIRKISTNGVTTIAGGSSEKSSIKDGPAQNASLSNDFELTFIPTLCALLVSDHQHQLVHQINLKEEDCTLGSKSGLGAVMAWTLGLLLSCILGLVIGIVIRPYIIPHEHTSRYHFTATWKHCQTNLGKLVPTLYSGIKNAVASCSCSSVFTIAMRLWKLSLSLLVLVFNIDFVSPRRPHLESVSLLDLDAYNSGEISKSSKYFDQLKDLMSFDEHLMDSTKEALNQGKGASVRIRPKDSNILHQESSVSNLGIVKRR*