AlfalfaGEDB | Msa1194690

M. sativa cultivar zhongmu-4 / Msa1194690

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0657970	Msa1194690	0.815267	1.009079e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 26 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTAGTCGTATCTCTCGT+CGG	0.594968	8_1:-42016519	None:intergenic
ACAAATCAGGTGCTATTAGC+TGG	0.518107	8_1:+42016549	Msa1194690:three_prime_UTR
AGAAACTATCTAATGTTTCC+AGG	0.375467	8_1:+42016599	Msa1194690:three_prime_UTR
AGATCAAAGTTGAGGTTGCA+TGG	0.498263	8_1:-42016452	None:intergenic
ATCCGACGAGAGATACGACT+AGG	0.699549	8_1:+42016517	Msa1194690:exon
ATTATTTGCTTAGAAACTCA+AGG	0.536924	8_1:-42016634	None:intergenic
CAGGTGCTATTAGCTGGTGT+TGG	0.611664	8_1:+42016555	Msa1194690:three_prime_UTR
CATCAAAGGCTACCATATGA+TGG	0.567903	8_1:-42016277	None:intergenic
CATGAGTTGCGCCACATCAA+AGG	0.541976	8_1:-42016291	None:intergenic
CTTTGATCTTCTTAAGAAGC+TGG	0.474951	8_1:+42016466	Msa1194690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGTGATTGACATTGGA+AGG	+	chr8_1:42016101-42016120	Msa1194690:intron	30.0%
TAGAGATGCTTATTAAGACT+AGG	+	chr8_1:42016125-42016144	Msa1194690:intron	30.0%
AACAAACTACAAACAAGACA+TGG	-	chr8_1:42016161-42016180	None:intergenic	30.0%
AATGGACATAGATTTAATGG+AGG	+	chr8_1:42016389-42016408	Msa1194690:intron	30.0%
TCTTAAGAAGATCAAAGTTG+AGG	-	chr8_1:42016463-42016482	None:intergenic	30.0%
TAGGTTTATGCATACAAATC+AGG	+	chr8_1:42016536-42016555	Msa1194690:three_prime_UTR	30.0%
AGAAACTATCTAATGTTTCC+AGG	+	chr8_1:42016599-42016618	Msa1194690:three_prime_UTR	30.0%
GAAACTATCTAATGTTTCCA+GGG	+	chr8_1:42016600-42016619	Msa1194690:three_prime_UTR	30.0%
TGACAGACTAACATAAAGAA+TGG	-	chr8_1:42016683-42016702	None:intergenic	30.0%
AAAAAGTGATTGACATTGGA+AGG	+	chr8_1:42016101-42016120	Msa1194690:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	42015836	42016721	42015836	ID=Msa1194690;Name=Msa1194690
chr8_1	mRNA	42015836	42016721	42015836	ID=Msa1194690-mRNA-1;Parent=Msa1194690;Name=Msa1194690-mRNA-1;_AED=0.08;_eAED=0.33;_QI=65\|0\|0.25\|0.5\|1\|1\|4\|204\|41
chr8_1	exon	42015836	42015843	42015836	ID=Msa1194690-mRNA-1:exon:13585;Parent=Msa1194690-mRNA-1
chr8_1	exon	42015917	42015922	42015917	ID=Msa1194690-mRNA-1:exon:13586;Parent=Msa1194690-mRNA-1
chr8_1	exon	42016233	42016336	42016233	ID=Msa1194690-mRNA-1:exon:13587;Parent=Msa1194690-mRNA-1
chr8_1	exon	42016445	42016721	42016445	ID=Msa1194690-mRNA-1:exon:13588;Parent=Msa1194690-mRNA-1
chr8_1	five_prime_UTR	42015836	42015843	42015836	ID=Msa1194690-mRNA-1:five_prime_utr;Parent=Msa1194690-mRNA-1
chr8_1	five_prime_UTR	42015917	42015922	42015917	ID=Msa1194690-mRNA-1:five_prime_utr;Parent=Msa1194690-mRNA-1
chr8_1	five_prime_UTR	42016233	42016283	42016233	ID=Msa1194690-mRNA-1:five_prime_utr;Parent=Msa1194690-mRNA-1
chr8_1	CDS	42016284	42016336	42016284	ID=Msa1194690-mRNA-1:cds;Parent=Msa1194690-mRNA-1
chr8_1	CDS	42016445	42016517	42016445	ID=Msa1194690-mRNA-1:cds;Parent=Msa1194690-mRNA-1
chr8_1	three_prime_UTR	42016518	42016721	42016518	ID=Msa1194690-mRNA-1:three_prime_utr;Parent=Msa1194690-mRNA-1

Gene Sequence	>Msa1194690 ATGGTAGCCTTTGATGTGGCGCAACTCATGAAATTGGTGGATGTCCAATTTATTGATAATCCATGCAACCTCAACTTTGATCTTCTTAAGAAGCTGGCAGGCCTACACATGACTCTCTTTTTGTGA
Protein sequence	>Msa1194690 MVAFDVAQLMKLVDVQFIDNPCNLNFDLLKKLAGLHMTLFL*