AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1195720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1195720 MtrunA17_Chr8g0363731 95.687 742 32 0 1 742 1 742 0.0 1443
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1195720 AT1G05087.1 40.506 237 127 6 1 234 1 226 1.08e-44 161
Msa1195720 AT4G20720.1 40.506 237 127 6 1 234 1 226 2.56e-43 167
Msa1195720 AT4G20720.2 33.088 272 148 8 482 741 365 614 9.85e-18 88.2
Msa1195720 AT1G05090.1 31.985 272 151 7 482 741 149 398 3.47e-17 85.1

Find 190 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTTGAAATGGATTTATT+TGG 0.147822 8_1:+44033035 Msa1195720:CDS
AGTAGCTCCATATCTCATTT+TGG 0.157325 8_1:-44034456 None:intergenic
CGGTGAAGATGATTGGTTTC+AGG 0.168561 8_1:+44031975 Msa1195720:CDS
CTTGAATCTCTTCAACTTGA+TGG 0.178260 8_1:+44030996 Msa1195720:CDS
TTCAGATTTGGAAGCATTTC+CGG 0.188789 8_1:+44031573 Msa1195720:CDS
CAATGTGTCTGAGCAGAATT+TGG 0.194810 8_1:+44031663 Msa1195720:CDS
TATGACCTTTGGTACCTTAT+TGG 0.211888 8_1:+44034778 Msa1195720:three_prime_UTR
TTTATCTGAACTACTGGATT+TGG 0.236639 8_1:+44031507 Msa1195720:CDS
CCATCTGGACAGTTATGTTT+TGG 0.248771 8_1:-44032266 None:intergenic
AACTGCTTTATTTGATCTAT+TGG 0.255702 8_1:-44030708 None:intergenic
TTGGATACGGTATCTGGATA+TGG 0.270412 8_1:+44031901 Msa1195720:CDS
ATTAGCACCCTCTGCTGTTT+TGG 0.271434 8_1:-44032811 None:intergenic
TTGTTCCACTTTGGCCAATA+AGG 0.274174 8_1:-44034792 None:intergenic
TGGTTCGTCTACTAGGAATT+TGG 0.278084 8_1:+44032098 Msa1195720:CDS
GATGTATGGAGCGGCTTTAC+TGG 0.285601 8_1:+44032939 Msa1195720:CDS
AAATATTTGGAATAACAAAA+TGG 0.289958 8_1:+44030527 Msa1195720:five_prime_UTR
ATCAAACAACTCACATGATA+TGG 0.306257 8_1:+44033061 Msa1195720:CDS
GTTCTTATTCATTTGATTCA+TGG 0.313951 8_1:+44032436 Msa1195720:CDS
ATGCTAATAGTTCTTCTAAC+AGG 0.317422 8_1:+44032337 Msa1195720:CDS
CTGCGACGGAAGGGAGGTTT+GGG 0.320950 8_1:-44030800 None:intergenic
TCTGCGACGGAAGGGAGGTT+TGG 0.321825 8_1:-44030801 None:intergenic
ATCTGAAAAGACCTTTGAAA+TGG 0.344280 8_1:+44033025 Msa1195720:CDS
CTGGCCAGTAATCTCTGAAT+TGG 0.345030 8_1:-44032508 None:intergenic
TCAGATTTGGAAGCATTTCC+GGG 0.346171 8_1:+44031574 Msa1195720:CDS
CGATCATTCTAAAGTTGAAT+TGG 0.348234 8_1:+44031882 Msa1195720:CDS
TTTAAATATCAAGACGTAGA+AGG 0.353613 8_1:-44034505 None:intergenic
TTCTTAAATTTAATAGCTTC+AGG 0.355133 8_1:-44030951 None:intergenic
CTATCTTTGAGTTAGAAGTT+TGG 0.359887 8_1:-44032008 None:intergenic
GTTGAATTGGATACGGTATC+TGG 0.364677 8_1:+44031895 Msa1195720:CDS
ATTAGCGGATAGTTTACTTT+GGG 0.364909 8_1:+44034747 Msa1195720:three_prime_UTR
TTTAGAATGATCGACTGAAT+TGG 0.368677 8_1:-44031872 None:intergenic
CAGCGTCCGGTGAAGATGAT+TGG 0.373009 8_1:+44031968 Msa1195720:CDS
GAAAGGATCTTCTTGTTTAG+TGG 0.378098 8_1:-44032967 None:intergenic
AACTAAGATTCTCATTTGCT+TGG 0.379629 8_1:-44031726 None:intergenic
AAGCCGCTCCATACATCAAA+TGG 0.384178 8_1:-44032933 None:intergenic
AAAATTCAAAATTTCCCATC+TGG 0.385174 8_1:-44032281 None:intergenic
TCATCGGTAGCCTCAATATC+AGG 0.386898 8_1:-44032165 None:intergenic
GCCGGCACACAAGACCCTTC+TGG 0.388170 8_1:+44032231 Msa1195720:CDS
ACTGTCAAGTAATTCAGATT+TGG 0.396503 8_1:+44031561 Msa1195720:CDS
TTGCTACTGGTTCGTCTACT+AGG 0.397902 8_1:+44032091 Msa1195720:CDS
AAATCCAGTAGTTCAGATAA+AGG 0.400263 8_1:-44031505 None:intergenic
GTTTCCAATTCAGAGATTAC+TGG 0.401023 8_1:+44032504 Msa1195720:CDS
TCAGAGATTACTGGCCAGAC+TGG 0.404766 8_1:+44032513 Msa1195720:CDS
AGCCTCAATATCAGGTATCT+TGG 0.405131 8_1:-44032157 None:intergenic
TCAAAGATAGATGGCCAGCC+TGG 0.408385 8_1:+44032021 Msa1195720:CDS
CTCCTGATGCTTCTGAAGCT+TGG 0.413204 8_1:-44031762 None:intergenic
GAATTGGACTCTTCGTGAAC+AGG 0.413222 8_1:-44031856 None:intergenic
GTGGTCGTTTCCGACTTTCC+AGG 0.413719 8_1:-44032039 None:intergenic
TTGTTATTGCTCCCCTGCCA+TGG 0.413741 8_1:-44032627 None:intergenic
GATTCCTTTATCTGAACTAC+TGG 0.415911 8_1:+44031501 Msa1195720:CDS
TCATTTCAAATTTCCCAGTC+TGG 0.422259 8_1:-44032527 None:intergenic
ATTAAATTTAAGAATACTGT+TGG 0.424380 8_1:+44030960 Msa1195720:CDS
AACGACAAGATAATGATAAC+AGG 0.425341 8_1:+44032385 Msa1195720:CDS
GATTGGCGTCTTTGCGAAGA+AGG 0.429998 8_1:-44030737 None:intergenic
GAGTTTGTCTGGTGTTGATC+TGG 0.432297 8_1:+44031609 Msa1195720:CDS
GAAAGTTCGTTGAGTTTGTC+TGG 0.437478 8_1:+44031598 Msa1195720:CDS
CATTAGCGGATAGTTTACTT+TGG 0.438516 8_1:+44034746 Msa1195720:three_prime_UTR
GGGAGCAATAACAAGGAAAC+TGG 0.440524 8_1:+44032636 Msa1195720:CDS
TAACAAGGAAACTGGTATTA+CGG 0.443478 8_1:+44032644 Msa1195720:CDS
CTGCAGCTGCTACTTTAAAC+AGG 0.443912 8_1:+44033165 Msa1195720:CDS
CTTCTAACAGGGACTTTGAC+TGG 0.443983 8_1:+44032349 Msa1195720:CDS
TGGTTTCACTCTCTTGCCAC+TGG 0.444400 8_1:-44032137 None:intergenic
ACTTCTAACTCAAAGATAGA+TGG 0.445407 8_1:+44032012 Msa1195720:CDS
ATCAGAGTGTGAAACGCTAC+TGG 0.448375 8_1:-44032739 None:intergenic
ATCTGTTATCTTTAATTGAA+AGG 0.457759 8_1:+44034571 Msa1195720:three_prime_UTR
AGGTGGCGAAGGATCGAGTT+TGG 0.459208 8_1:-44030832 None:intergenic
GATTTCAATCCTTCAGCGTC+CGG 0.462276 8_1:+44031955 Msa1195720:CDS
GGTGAAGATGATTGGTTTCA+GGG 0.466173 8_1:+44031976 Msa1195720:CDS
GATTCATGGAATGATTTCAC+TGG 0.466290 8_1:+44032450 Msa1195720:CDS
TGTTATTGCTAACTTGCCAT+TGG 0.467956 8_1:-44032872 None:intergenic
AGAATACTGTTGGGTATCGT+TGG 0.469251 8_1:+44030970 Msa1195720:CDS
GGGGAGATGAGTATGACCTT+TGG 0.474541 8_1:+44034767 Msa1195720:three_prime_UTR
ATGCCGACCCATTTGATGTA+TGG 0.474672 8_1:+44032925 Msa1195720:CDS
CAGTTTGTACAGGAATGTTA+CGG 0.477809 8_1:-44032989 None:intergenic
GTTATCTTTAATTGAAAGGC+GGG 0.478680 8_1:+44034575 Msa1195720:three_prime_UTR
TTCCAAGCTTCAGAAGCATC+AGG 0.481280 8_1:+44031760 Msa1195720:CDS
ACCAGAAGGGTCTTGTGTGC+CGG 0.487574 8_1:-44032232 None:intergenic
AGAAAACAAACAGTGAAGAA+TGG 0.488520 8_1:-44034637 None:intergenic
CGGAAGGGAGGTTTGGGAGA+GGG 0.489052 8_1:-44030794 None:intergenic
GTTTGATTCACAGTTTGTAC+AGG 0.489648 8_1:-44032999 None:intergenic
GCGACGGTTTCTGCGACGGA+AGG 0.495519 8_1:-44030810 None:intergenic
TTAAATTTAAGAATACTGTT+GGG 0.495860 8_1:+44030961 Msa1195720:CDS
TAGGAATTTGGACTGGATGC+AGG 0.497698 8_1:+44032110 Msa1195720:CDS
GATAATGTTGGTACTGATGA+AGG 0.499212 8_1:+44032414 Msa1195720:CDS
TTCTAAAGTTGAATTGGATA+CGG 0.500970 8_1:+44031888 Msa1195720:CDS
ATCTCTTCAACTTGATGGAT+CGG 0.503202 8_1:+44031001 Msa1195720:CDS
TGGATACGGTATCTGGATAT+GGG 0.503330 8_1:+44031902 Msa1195720:CDS
TCGTTTCCGACTTTCCAGGC+TGG 0.503728 8_1:-44032035 None:intergenic
GGAATGGAATGGAATTGAAA+CGG 0.513419 8_1:-44034611 None:intergenic
GATGTTTCCACTGCAGAAGT+AGG 0.514169 8_1:+44034354 Msa1195720:CDS
GGTGGACCATTGGTTGCTGC+AGG 0.514646 8_1:-44033143 None:intergenic
GTTGGCCTCCCAACCCGAAA+AGG 0.514863 8_1:-44031812 None:intergenic
AAGATGATTCATTTGATGCA+TGG 0.515307 8_1:+44032190 Msa1195720:CDS
TAATTTCAGATATGCCAGTC+TGG 0.516074 8_1:-44032770 None:intergenic
CCAAAACATAACTGTCCAGA+TGG 0.519188 8_1:+44032266 Msa1195720:CDS
GATGCATGTTCTTCCACTGT+CGG 0.523787 8_1:-44031448 None:intergenic
ACGGAAGGGAGGTTTGGGAG+AGG 0.525670 8_1:-44030795 None:intergenic
AGCAGCTGCAGGTGGACCAT+TGG 0.527575 8_1:-44033153 None:intergenic
TCACTGATTCATTTGATGCA+TGG 0.527791 8_1:+44032679 Msa1195720:CDS
CGAAGGATCGAGTTTGGCGA+CGG 0.534066 8_1:-44030826 None:intergenic
GATGCAAAATGATCCATGGC+AGG 0.535197 8_1:+44032614 Msa1195720:CDS
CAAATCTTACAGCGAAGGTA+AGG 0.537027 8_1:-44030852 None:intergenic
CGGTTTCTGCGACGGAAGGG+AGG 0.538351 8_1:-44030806 None:intergenic
TCTGCAGTGGAAACATCTCT+AGG 0.539688 8_1:-44034348 None:intergenic
TAACAGGGACTTTGACTGGA+TGG 0.539939 8_1:+44032353 Msa1195720:CDS
TGGATTGTACCATGACAGAT+TGG 0.540472 8_1:-44030754 None:intergenic
CTGTTTAAAGTAGCAGCTGC+AGG 0.542204 8_1:-44033164 None:intergenic
TCCAAATAAATCCATTTCAA+AGG 0.543159 8_1:-44033036 None:intergenic
TGGTACCTTATTGGCCAAAG+TGG 0.548426 8_1:+44034787 Msa1195720:three_prime_UTR
GAAAGATTCTGACGGTGTAA+AGG 0.550609 8_1:+44031924 Msa1195720:CDS
AGCCGCTCCATACATCAAAT+GGG 0.550701 8_1:-44032932 None:intergenic
AACAGGACAATTGATAATGT+TGG 0.551690 8_1:+44032402 Msa1195720:CDS
TTTGGCGACGGTTTCTGCGA+CGG 0.554777 8_1:-44030814 None:intergenic
AAATGAATCATCTTCTTCAT+CGG 0.555042 8_1:-44032181 None:intergenic
TACTGGATTTGGAAATTCGA+TGG 0.557879 8_1:+44031518 Msa1195720:CDS
CTGAAACCAATCATCTTCAC+CGG 0.558500 8_1:-44031974 None:intergenic
AACCAAGATACCTGATATTG+AGG 0.558764 8_1:+44032155 Msa1195720:CDS
CAGTGAAGAATGGAATGGAA+TGG 0.559240 8_1:-44034627 None:intergenic
AAGATAACAGATACTTTGAA+AGG 0.560386 8_1:-44034560 None:intergenic
CAGAGATTACTGGCCAGACT+GGG 0.561742 8_1:+44032514 Msa1195720:CDS
ATCGTTAGTAGTCACACTAT+CGG 0.565670 8_1:-44032901 None:intergenic
AGTGCTCTCTCCACCTCAGA+AGG 0.566891 8_1:-44031541 None:intergenic
TATCTTTAATTGAAAGGCGG+GGG 0.569346 8_1:+44034577 Msa1195720:three_prime_UTR
ATGTTTCCACTGCAGAAGTA+GGG 0.570408 8_1:+44034355 Msa1195720:CDS
TCATCTTCACCGGACGCTGA+AGG 0.571756 8_1:-44031964 None:intergenic
TTAGCGGATAGTTTACTTTG+GGG 0.574443 8_1:+44034748 Msa1195720:three_prime_UTR
TGCAAAATGATCCATGGCAG+GGG 0.575545 8_1:+44032616 Msa1195720:CDS
CTTCGCTGTAAGATTTGCAA+TGG 0.577554 8_1:+44030858 Msa1195720:CDS
CTGCAGTGGAAACATCTCTA+GGG 0.577642 8_1:-44034347 None:intergenic
AATTCGATGGCCTTCTGAGG+TGG 0.579102 8_1:+44031531 Msa1195720:CDS
TGGCTGGAAATAATACCAGA+AGG 0.580546 8_1:-44032246 None:intergenic
TGTTATCTTTAATTGAAAGG+CGG 0.581515 8_1:+44034574 Msa1195720:three_prime_UTR
CAGCGAAGGTAAGGTGGCGA+AGG 0.581912 8_1:-44030843 None:intergenic
AAAATTGCAGAAAGTGCTGA+TGG 0.582149 8_1:+44032570 Msa1195720:CDS
AGAACTAGCAGACTTGAAGT+TGG 0.583160 8_1:-44031830 None:intergenic
CGTCTACTAGGAATTTGGAC+TGG 0.584645 8_1:+44032103 Msa1195720:CDS
GGAAATTCGATGGCCTTCTG+AGG 0.586310 8_1:+44031528 Msa1195720:CDS
ATCTTACAGCGAAGGTAAGG+TGG 0.587404 8_1:-44030849 None:intergenic
TTATCTTTAATTGAAAGGCG+GGG 0.588349 8_1:+44034576 Msa1195720:three_prime_UTR
AAACTCAACGAACTTTCACC+CGG 0.588711 8_1:-44031592 None:intergenic
AACATGCATCAAGCAGAGCA+AGG 0.593499 8_1:+44031461 Msa1195720:CDS
AAGAATGGAATGGAATGGAA+TGG 0.595253 8_1:-44034622 None:intergenic
GGCTGGAAATAATACCAGAA+GGG 0.595650 8_1:-44032245 None:intergenic
CGACGGTTTCTGCGACGGAA+GGG 0.597357 8_1:-44030809 None:intergenic
GGTCTGTAGAGGATCAGAGT+GGG 0.598749 8_1:+44031785 Msa1195720:CDS
TTATTGTAAATCAAGCATGC+CGG 0.600282 8_1:+44034690 Msa1195720:three_prime_UTR
GACCCATTTGATGTATGGAG+CGG 0.600951 8_1:+44032930 Msa1195720:CDS
CATTGCAAATCTTACAGCGA+AGG 0.603877 8_1:-44030857 None:intergenic
GCAAAGACGCCAATCTGTCA+TGG 0.603996 8_1:+44030745 Msa1195720:CDS
TGTACAGGAATGTTACGGAA+AGG 0.607780 8_1:-44032984 None:intergenic
AGTACTCCTGCAGCAACCAA+TGG 0.607957 8_1:+44033137 Msa1195720:CDS
GAGTGTGAAACGCTACTGGA+AGG 0.609237 8_1:-44032735 None:intergenic
ATGCAAAATGATCCATGGCA+GGG 0.610199 8_1:+44032615 Msa1195720:CDS
AGATGGCCAGCCTGGAAAGT+CGG 0.615428 8_1:+44032029 Msa1195720:CDS
ACAAACAGTGAAGAATGGAA+TGG 0.615672 8_1:-44034632 None:intergenic
AGCATCAGGAGGGTCTGTAG+AGG 0.617538 8_1:+44031774 Msa1195720:CDS
ATCTTTAATTGAAAGGCGGG+GGG 0.621270 8_1:+44034578 Msa1195720:three_prime_UTR
TGCTAATAGTTCTTCTAACA+GGG 0.621949 8_1:+44032338 Msa1195720:CDS
CATGATACCAAAACAGCAGA+GGG 0.621958 8_1:+44032804 Msa1195720:CDS
CAAAACATAACTGTCCAGAT+GGG 0.624316 8_1:+44032267 Msa1195720:CDS
GAATTGGAAACACTATGTGA+AGG 0.625154 8_1:-44032492 None:intergenic
TTTGGCCAATAAGGTACCAA+AGG 0.625353 8_1:-44034783 None:intergenic
ACCATAAAACAATACAACAC+CGG 0.627969 8_1:-44034709 None:intergenic
ATGGCAGGGGAGCAATAACA+AGG 0.628682 8_1:+44032629 Msa1195720:CDS
CACTGAAAACAAGATTCGAA+TGG 0.630100 8_1:+44030674 Msa1195720:exon
TTTAAAGTAGCAGCTGCAGG+TGG 0.630787 8_1:-44033161 None:intergenic
ATGCAACTACTGTACATTAG+CGG 0.634969 8_1:+44034732 Msa1195720:three_prime_UTR
CAAGCTTCAGAAGCATCAGG+AGG 0.636096 8_1:+44031763 Msa1195720:CDS
GACCACGGATCTCTATCATA+CGG 0.636422 8_1:+44032056 Msa1195720:CDS
TTCCGTATGATAGAGATCCG+TGG 0.642095 8_1:-44032058 None:intergenic
TTAAATTTAATAGCTTCAGG+AGG 0.643488 8_1:-44030948 None:intergenic
GCTCCATACATCAAATGGGT+CGG 0.644215 8_1:-44032928 None:intergenic
TCTGATATAAAAGACCAGAC+TGG 0.645717 8_1:+44032756 Msa1195720:CDS
ACTGGATGCAAAATGATCCA+TGG 0.648211 8_1:+44032610 Msa1195720:CDS
GGAGATGGTAGCACCGACAG+TGG 0.648273 8_1:+44031435 Msa1195720:intron
TAAACGATTGAACGCCGCGG+AGG 0.649211 8_1:-44030887 None:intergenic
ACTGGATGCAAGGTGACCAA+TGG 0.651198 8_1:+44032856 Msa1195720:CDS
TCAGGAGGAAGATCTTTGTG+AGG 0.654066 8_1:-44030933 None:intergenic
TGGAAAGTCGGAAACGACCA+CGG 0.657566 8_1:+44032041 Msa1195720:CDS
AACAGAGGTTCAGTGAGTGG+TGG 0.661471 8_1:-44030618 None:intergenic
AAGCTTCAGAAGCATCAGGA+GGG 0.662752 8_1:+44031764 Msa1195720:CDS
TCATGATACCAAAACAGCAG+AGG 0.665643 8_1:+44032803 Msa1195720:CDS
TGAAACAGAGGTTCAGTGAG+TGG 0.668647 8_1:-44030621 None:intergenic
GTCTGTAGAGGATCAGAGTG+GGG 0.674203 8_1:+44031786 Msa1195720:CDS
GGATATGGGAAAGATTCTGA+CGG 0.681638 8_1:+44031916 Msa1195720:CDS
GGGTCTGTAGAGGATCAGAG+TGG 0.689631 8_1:+44031784 Msa1195720:CDS
ATGTGAAGGATATTGTGTAG+TGG 0.709070 8_1:-44032478 None:intergenic
TGCAATGGCAGACTCCTCCG+CGG 0.713586 8_1:+44030873 Msa1195720:CDS
AGATAAACGATTGAACGCCG+CGG 0.750884 8_1:-44030890 None:intergenic
ACTGGATGCAGGATGACCAG+TGG 0.752791 8_1:+44032121 Msa1195720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAAAATCAATTTTATTT+AGG + chr8_1:44033934-44033953 Msa1195720:intron 10.0%
!!! AAATATTTGGAATAACAAAA+TGG + chr8_1:44030527-44030546 Msa1195720:five_prime_UTR 15.0%
!! AAAAGAAAAATAATAGCAAA+TGG - chr8_1:44030565-44030584 None:intergenic 15.0%
!! ATTAAATTTAAGAATACTGT+TGG + chr8_1:44030960-44030979 Msa1195720:CDS 15.0%
!! TTAAATTTAAGAATACTGTT+GGG + chr8_1:44030961-44030980 Msa1195720:CDS 15.0%
!!! ATAAATTTTATAGTAATGTG+AGG + chr8_1:44033376-44033395 Msa1195720:intron 15.0%
!! ATAAATTAACATATATGTAG+CGG - chr8_1:44033581-44033600 None:intergenic 15.0%
!! TCAAAAAGATATTTATTACT+TGG + chr8_1:44034132-44034151 Msa1195720:intron 15.0%
!! TTCTTAAATTTAATAGCTTC+AGG - chr8_1:44030954-44030973 None:intergenic 20.0%
!!! ATTTTTTTGCATCACAATAA+AGG - chr8_1:44031148-44031167 None:intergenic 20.0%
!! ATGCAAAAAAATTGTAGTTA+TGG + chr8_1:44031156-44031175 Msa1195720:intron 20.0%
!!! TTATGGAAAGTTCATTTTTT+TGG + chr8_1:44031173-44031192 Msa1195720:intron 20.0%
!!! ATAGTTTTAAATTGCATTAG+CGG - chr8_1:44031378-44031397 None:intergenic 20.0%
!!! TTTTCACAGAATGATTTTTT+AGG + chr8_1:44033095-44033114 Msa1195720:CDS 20.0%
!! TGTATAATTCAATCAATGTA+AGG + chr8_1:44033346-44033365 Msa1195720:intron 20.0%
!! GTATAATTCAATCAATGTAA+GGG + chr8_1:44033347-44033366 Msa1195720:intron 20.0%
!!! TTATTTAAAATAGATACCCT+TGG - chr8_1:44033461-44033480 None:intergenic 20.0%
!!! AAGGGTATCTATTTTAAATA+AGG + chr8_1:44033460-44033479 Msa1195720:intron 20.0%
!!! AGGGTATCTATTTTAAATAA+GGG + chr8_1:44033461-44033480 Msa1195720:intron 20.0%
!!! TTTTTAGCTTTTTTGATAGT+AGG - chr8_1:44033722-44033741 None:intergenic 20.0%
!! ATCTGTTATCTTTAATTGAA+AGG + chr8_1:44034571-44034590 Msa1195720:three_prime_UTR 20.0%
!!! AACTGCTTTATTTGATCTAT+TGG - chr8_1:44030711-44030730 None:intergenic 25.0%
! TTAAATTTAATAGCTTCAGG+AGG - chr8_1:44030951-44030970 None:intergenic 25.0%
!! TGCATTTTACCACAATATAA+AGG - chr8_1:44031294-44031313 None:intergenic 25.0%
!!! ATCTGGATAGTTTTTTTGAT+CGG + chr8_1:44031626-44031645 Msa1195720:CDS 25.0%
!!! TTCTAAAGTTGAATTGGATA+CGG + chr8_1:44031888-44031907 Msa1195720:CDS 25.0%
! AAATGAATCATCTTCTTCAT+CGG - chr8_1:44032184-44032203 None:intergenic 25.0%
! AAAATTCAAAATTTCCCATC+TGG - chr8_1:44032284-44032303 None:intergenic 25.0%
! GTTCTTATTCATTTGATTCA+TGG + chr8_1:44032436-44032455 Msa1195720:CDS 25.0%
!! TCTGCAATTTTTGTATCATT+AGG - chr8_1:44032561-44032580 None:intergenic 25.0%
!!! ACCTTTGAAATGGATTTATT+TGG + chr8_1:44033035-44033054 Msa1195720:CDS 25.0%
! TCCAAATAAATCCATTTCAA+AGG - chr8_1:44033039-44033058 None:intergenic 25.0%
! AGTCTATTTACAACATCTTT+AGG + chr8_1:44033284-44033303 Msa1195720:intron 25.0%
! GATAGTAGGTGAATAAATAA+AGG - chr8_1:44033708-44033727 None:intergenic 25.0%
! TGAGAAATGTTGATCAATTA+GGG - chr8_1:44033774-44033793 None:intergenic 25.0%
! TTGAGAAATGTTGATCAATT+AGG - chr8_1:44033775-44033794 None:intergenic 25.0%
! ATATGTAACTGTTGTATCTA+CGG + chr8_1:44033798-44033817 Msa1195720:intron 25.0%
!! ATTTGATGTACAAGTTGAAT+AGG + chr8_1:44034060-44034079 Msa1195720:intron 25.0%
! TTTAAATATCAAGACGTAGA+AGG - chr8_1:44034508-44034527 None:intergenic 25.0%
! AAGATAACAGATACTTTGAA+AGG - chr8_1:44034563-44034582 None:intergenic 25.0%
! TGTTATCTTTAATTGAAAGG+CGG + chr8_1:44034574-44034593 Msa1195720:three_prime_UTR 25.0%
!!! CACTGTTTGTTTTCTTTTTT+AGG + chr8_1:44034645-44034664 Msa1195720:three_prime_UTR 25.0%
TGCTATGAACCTTTATATTG+TGG + chr8_1:44031282-44031301 Msa1195720:intron 30.0%
ATGCAATGTGATTGAAATGA+CGG + chr8_1:44031309-44031328 Msa1195720:intron 30.0%
! CATCAAAGTCTTTTAGATTG+TGG + chr8_1:44031352-44031371 Msa1195720:intron 30.0%
AAATCCAGTAGTTCAGATAA+AGG - chr8_1:44031508-44031527 None:intergenic 30.0%
TTTATCTGAACTACTGGATT+TGG + chr8_1:44031507-44031526 Msa1195720:CDS 30.0%
ACTGTCAAGTAATTCAGATT+TGG + chr8_1:44031561-44031580 Msa1195720:CDS 30.0%
!! TTGGCTTTTGAAAGAAATGT+AGG + chr8_1:44031682-44031701 Msa1195720:CDS 30.0%
AACTAAGATTCTCATTTGCT+TGG - chr8_1:44031729-44031748 None:intergenic 30.0%
! TTTAGAATGATCGACTGAAT+TGG - chr8_1:44031875-44031894 None:intergenic 30.0%
!! CGATCATTCTAAAGTTGAAT+TGG + chr8_1:44031882-44031901 Msa1195720:CDS 30.0%
! CTATCTTTGAGTTAGAAGTT+TGG - chr8_1:44032011-44032030 None:intergenic 30.0%
ACTTCTAACTCAAAGATAGA+TGG + chr8_1:44032012-44032031 Msa1195720:CDS 30.0%
GAAAAAGAAGAAATTGCTAC+TGG + chr8_1:44032078-44032097 Msa1195720:CDS 30.0%
AAGATGATTCATTTGATGCA+TGG + chr8_1:44032190-44032209 Msa1195720:CDS 30.0%
ATGCTAATAGTTCTTCTAAC+AGG + chr8_1:44032337-44032356 Msa1195720:CDS 30.0%
TGCTAATAGTTCTTCTAACA+GGG + chr8_1:44032338-44032357 Msa1195720:CDS 30.0%
AACGACAAGATAATGATAAC+AGG + chr8_1:44032385-44032404 Msa1195720:CDS 30.0%
!! AACAGGACAATTGATAATGT+TGG + chr8_1:44032402-44032421 Msa1195720:CDS 30.0%
!! GTTCATCTAGTAATTTTGAC+TGG + chr8_1:44032592-44032611 Msa1195720:CDS 30.0%
TAACAAGGAAACTGGTATTA+CGG + chr8_1:44032644-44032663 Msa1195720:CDS 30.0%
!! CTTCTGTTAAAAGTTTTGAC+TGG + chr8_1:44032838-44032857 Msa1195720:CDS 30.0%
! ATTTCAAAGGTCTTTTCAGA+TGG - chr8_1:44033026-44033045 None:intergenic 30.0%
! ATCTGAAAAGACCTTTGAAA+TGG + chr8_1:44033025-44033044 Msa1195720:CDS 30.0%
ATCAAACAACTCACATGATA+TGG + chr8_1:44033061-44033080 Msa1195720:CDS 30.0%
! TCACATGATATGGATTTTAG+TGG + chr8_1:44033071-44033090 Msa1195720:CDS 30.0%
ATGCATAATTGAATTCAACC+AGG + chr8_1:44033232-44033251 Msa1195720:intron 30.0%
! TCTTTTAGTATCAGATCAGA+TGG + chr8_1:44033255-44033274 Msa1195720:intron 30.0%
!!! GTGTCCTATATTTTTTACAC+CGG - chr8_1:44033553-44033572 None:intergenic 30.0%
GAGAAATGTTGATCAATTAG+GGG - chr8_1:44033773-44033792 None:intergenic 30.0%
TATGAGTGTTATATAGGTGT+CGG + chr8_1:44033884-44033903 Msa1195720:intron 30.0%
CAAATTAGAACTATGAAGCA+CGG - chr8_1:44034045-44034064 None:intergenic 30.0%
GAAGTTCTTCATCCTTTAAA+TGG + chr8_1:44034154-44034173 Msa1195720:intron 30.0%
!!! GCATTTTATCATTGATTCTC+TGG + chr8_1:44034192-44034211 Msa1195720:intron 30.0%
! TAGTTTTTGAACATTCCTAC+TGG + chr8_1:44034225-44034244 Msa1195720:intron 30.0%
TGCTATATTGTTGCATGTTT+AGG + chr8_1:44034295-44034314 Msa1195720:intron 30.0%
GCTATATTGTTGCATGTTTA+GGG + chr8_1:44034296-44034315 Msa1195720:intron 30.0%
GTTATCTTTAATTGAAAGGC+GGG + chr8_1:44034575-44034594 Msa1195720:three_prime_UTR 30.0%
TTATCTTTAATTGAAAGGCG+GGG + chr8_1:44034576-44034595 Msa1195720:three_prime_UTR 30.0%
AGAAAACAAACAGTGAAGAA+TGG - chr8_1:44034640-44034659 None:intergenic 30.0%
TTATTGTAAATCAAGCATGC+CGG + chr8_1:44034690-44034709 Msa1195720:three_prime_UTR 30.0%
ACCATAAAACAATACAACAC+CGG - chr8_1:44034712-44034731 None:intergenic 30.0%
! ATTAGCGGATAGTTTACTTT+GGG + chr8_1:44034747-44034766 Msa1195720:three_prime_UTR 30.0%
! TCTTTTCGTTGTTGAAACAG+AGG - chr8_1:44030636-44030655 None:intergenic 35.0%
CACTGAAAACAAGATTCGAA+TGG + chr8_1:44030674-44030693 Msa1195720:exon 35.0%
! TCGTTTATCTGTGTCTTTTG+TGG + chr8_1:44030903-44030922 Msa1195720:CDS 35.0%
CTTGAATCTCTTCAACTTGA+TGG + chr8_1:44030996-44031015 Msa1195720:CDS 35.0%
! ATCTCTTCAACTTGATGGAT+CGG + chr8_1:44031001-44031020 Msa1195720:CDS 35.0%
TTCCAAATTTCCAGCATCAA+GGG - chr8_1:44031088-44031107 None:intergenic 35.0%
ATTCCAAATTTCCAGCATCA+AGG - chr8_1:44031089-44031108 None:intergenic 35.0%
! GTTTGGATGGTATTAAGTTG+CGG + chr8_1:44031244-44031263 Msa1195720:intron 35.0%
GATTCCTTTATCTGAACTAC+TGG + chr8_1:44031501-44031520 Msa1195720:CDS 35.0%
TACTGGATTTGGAAATTCGA+TGG + chr8_1:44031518-44031537 Msa1195720:CDS 35.0%
!! TTCAGATTTGGAAGCATTTC+CGG + chr8_1:44031573-44031592 Msa1195720:CDS 35.0%
!! GCTTTTGAAAGAAATGTAGG+TGG + chr8_1:44031685-44031704 Msa1195720:CDS 35.0%
AACCAAGATACCTGATATTG+AGG + chr8_1:44032155-44032174 Msa1195720:CDS 35.0%
! GATGCATGGAATGATTTTAC+TGG + chr8_1:44032204-44032223 Msa1195720:CDS 35.0%
CAAAACATAACTGTCCAGAT+GGG + chr8_1:44032267-44032286 Msa1195720:CDS 35.0%
!! GATAATGTTGGTACTGATGA+AGG + chr8_1:44032414-44032433 Msa1195720:CDS 35.0%
GATTCATGGAATGATTTCAC+TGG + chr8_1:44032450-44032469 Msa1195720:CDS 35.0%
ATGTGAAGGATATTGTGTAG+TGG - chr8_1:44032481-44032500 None:intergenic 35.0%
GAATTGGAAACACTATGTGA+AGG - chr8_1:44032495-44032514 None:intergenic 35.0%
GTTTCCAATTCAGAGATTAC+TGG + chr8_1:44032504-44032523 Msa1195720:CDS 35.0%
TCATTTCAAATTTCCCAGTC+TGG - chr8_1:44032530-44032549 None:intergenic 35.0%
!! AAAATTGCAGAAAGTGCTGA+TGG + chr8_1:44032570-44032589 Msa1195720:CDS 35.0%
!! TCACTGATTCATTTGATGCA+TGG + chr8_1:44032679-44032698 Msa1195720:CDS 35.0%
! GATGCATGGAATGATTTTAC+TGG + chr8_1:44032204-44032223 Msa1195720:CDS 35.0%
! ACTGGAAGGATTTTGTGAAA+AGG - chr8_1:44032724-44032743 None:intergenic 35.0%
TCTGATATAAAAGACCAGAC+TGG + chr8_1:44032756-44032775 Msa1195720:CDS 35.0%
TAATTTCAGATATGCCAGTC+TGG - chr8_1:44032773-44032792 None:intergenic 35.0%
!!! AAAAGTTTTGACTGGATGCA+AGG + chr8_1:44032846-44032865 Msa1195720:CDS 35.0%
! TGTTATTGCTAACTTGCCAT+TGG - chr8_1:44032875-44032894 None:intergenic 35.0%
ATCGTTAGTAGTCACACTAT+CGG - chr8_1:44032904-44032923 None:intergenic 35.0%
! GAAAGGATCTTCTTGTTTAG+TGG - chr8_1:44032970-44032989 None:intergenic 35.0%
CAGTTTGTACAGGAATGTTA+CGG - chr8_1:44032992-44033011 None:intergenic 35.0%
GTTTGATTCACAGTTTGTAC+AGG - chr8_1:44033002-44033021 None:intergenic 35.0%
ATGCAACTGCGATAATATCA+AGG - chr8_1:44033193-44033212 None:intergenic 35.0%
TGATCTGATACTAAAAGACC+TGG - chr8_1:44033253-44033272 None:intergenic 35.0%
! AAGCCAATTTCATTTGCTGA+CGG + chr8_1:44033426-44033445 Msa1195720:intron 35.0%
GGTTCTATATCTATGAAGCA+TGG + chr8_1:44033482-44033501 Msa1195720:intron 35.0%
ATCGCCGGTGTAAAAAATAT+AGG + chr8_1:44033546-44033565 Msa1195720:intron 35.0%
TAACATATATGTAGCGGTGT+CGG - chr8_1:44033575-44033594 None:intergenic 35.0%
TTCTTTAATTCGACACTCCT+AGG - chr8_1:44033918-44033937 None:intergenic 35.0%
ACATGTCGGACAACTAAAAT+CGG - chr8_1:44033963-44033982 None:intergenic 35.0%
CAAGATCAAATTTAGCCAGT+AGG - chr8_1:44034243-44034262 None:intergenic 35.0%
ATATTGTTGCATGTTTAGGG+TGG + chr8_1:44034299-44034318 Msa1195720:intron 35.0%
ATTTCCCCCAAAATGAGATA+TGG + chr8_1:44034449-44034468 Msa1195720:exon 35.0%
! TAGCTCCATATCTCATTTTG+GGG - chr8_1:44034457-44034476 None:intergenic 35.0%
! GTAGCTCCATATCTCATTTT+GGG - chr8_1:44034458-44034477 None:intergenic 35.0%
! AGTAGCTCCATATCTCATTT+TGG - chr8_1:44034459-44034478 None:intergenic 35.0%
TATCTTTAATTGAAAGGCGG+GGG + chr8_1:44034577-44034596 Msa1195720:three_prime_UTR 35.0%
GGAATGGAATGGAATTGAAA+CGG - chr8_1:44034614-44034633 None:intergenic 35.0%
AAGAATGGAATGGAATGGAA+TGG - chr8_1:44034625-44034644 None:intergenic 35.0%
ACAAACAGTGAAGAATGGAA+TGG - chr8_1:44034635-44034654 None:intergenic 35.0%
ATGCAACTACTGTACATTAG+CGG + chr8_1:44034732-44034751 Msa1195720:three_prime_UTR 35.0%
! CATTAGCGGATAGTTTACTT+TGG + chr8_1:44034746-44034765 Msa1195720:three_prime_UTR 35.0%
! TTAGCGGATAGTTTACTTTG+GGG + chr8_1:44034748-44034767 Msa1195720:three_prime_UTR 35.0%
TATGACCTTTGGTACCTTAT+TGG + chr8_1:44034778-44034797 Msa1195720:three_prime_UTR 35.0%
TGGATTGTACCATGACAGAT+TGG - chr8_1:44030757-44030776 None:intergenic 40.0%
!! GGGAGATTTTCGTCATTTTG+TGG - chr8_1:44030777-44030796 None:intergenic 40.0%
CAAATCTTACAGCGAAGGTA+AGG - chr8_1:44030855-44030874 None:intergenic 40.0%
CATTGCAAATCTTACAGCGA+AGG - chr8_1:44030860-44030879 None:intergenic 40.0%
CTTCGCTGTAAGATTTGCAA+TGG + chr8_1:44030858-44030877 Msa1195720:CDS 40.0%
! AGAATACTGTTGGGTATCGT+TGG + chr8_1:44030970-44030989 Msa1195720:CDS 40.0%
TTCCCTTGATGCTGGAAATT+TGG + chr8_1:44031083-44031102 Msa1195720:intron 40.0%
GTGTGTATGTGTGTGTAGTT+TGG + chr8_1:44031227-44031246 Msa1195720:intron 40.0%
GTATGTGTGTGTAGTTTGGA+TGG + chr8_1:44031231-44031250 Msa1195720:intron 40.0%
! ATGGTATTAAGTTGCGGTCT+CGG + chr8_1:44031250-44031269 Msa1195720:intron 40.0%
!! TCAGATTTGGAAGCATTTCC+GGG + chr8_1:44031574-44031593 Msa1195720:CDS 40.0%
AAACTCAACGAACTTTCACC+CGG - chr8_1:44031595-44031614 None:intergenic 40.0%
GAAAGTTCGTTGAGTTTGTC+TGG + chr8_1:44031598-44031617 Msa1195720:CDS 40.0%
CAATGTGTCTGAGCAGAATT+TGG + chr8_1:44031663-44031682 Msa1195720:CDS 40.0%
AGAACTAGCAGACTTGAAGT+TGG - chr8_1:44031833-44031852 None:intergenic 40.0%
GTTGAATTGGATACGGTATC+TGG + chr8_1:44031895-44031914 Msa1195720:CDS 40.0%
TTGGATACGGTATCTGGATA+TGG + chr8_1:44031901-44031920 Msa1195720:CDS 40.0%
TGGATACGGTATCTGGATAT+GGG + chr8_1:44031902-44031921 Msa1195720:CDS 40.0%
GGATATGGGAAAGATTCTGA+CGG + chr8_1:44031916-44031935 Msa1195720:CDS 40.0%
GAAAGATTCTGACGGTGTAA+AGG + chr8_1:44031924-44031943 Msa1195720:CDS 40.0%
CTGAAACCAATCATCTTCAC+CGG - chr8_1:44031977-44031996 None:intergenic 40.0%
!! GGTGAAGATGATTGGTTTCA+GGG + chr8_1:44031976-44031995 Msa1195720:CDS 40.0%
TGGTTCGTCTACTAGGAATT+TGG + chr8_1:44032098-44032117 Msa1195720:CDS 40.0%
AGCCTCAATATCAGGTATCT+TGG - chr8_1:44032160-44032179 None:intergenic 40.0%
!!! AATGATTTTACTGGCTCAGC+CGG + chr8_1:44032213-44032232 Msa1195720:CDS 40.0%
GGCTGGAAATAATACCAGAA+GGG - chr8_1:44032248-44032267 None:intergenic 40.0%
TGGCTGGAAATAATACCAGA+AGG - chr8_1:44032249-44032268 None:intergenic 40.0%
! CCATCTGGACAGTTATGTTT+TGG - chr8_1:44032269-44032288 None:intergenic 40.0%
CCAAAACATAACTGTCCAGA+TGG + chr8_1:44032266-44032285 Msa1195720:CDS 40.0%
GAGTGATACAAAAACAGCAG+AGG + chr8_1:44032314-44032333 Msa1195720:CDS 40.0%
ACTGGATGCAAAATGATCCA+TGG + chr8_1:44032610-44032629 Msa1195720:CDS 40.0%
ATGCAAAATGATCCATGGCA+GGG + chr8_1:44032615-44032634 Msa1195720:CDS 40.0%
TCATGATACCAAAACAGCAG+AGG + chr8_1:44032803-44032822 Msa1195720:CDS 40.0%
CATGATACCAAAACAGCAGA+GGG + chr8_1:44032804-44032823 Msa1195720:CDS 40.0%
TGTACAGGAATGTTACGGAA+AGG - chr8_1:44032987-44033006 None:intergenic 40.0%
AATAGATACCCTTGGCAGTT+GGG - chr8_1:44033453-44033472 None:intergenic 40.0%
AAATAGATACCCTTGGCAGT+TGG - chr8_1:44033454-44033473 None:intergenic 40.0%
ACTGTTGTATCTACGGTATG+TGG + chr8_1:44033805-44033824 Msa1195720:intron 40.0%
GGCTCGTATGAGTGTTATAT+AGG + chr8_1:44033878-44033897 Msa1195720:intron 40.0%
TTTAGTTGTCCGACATGTGT+TGG + chr8_1:44033965-44033984 Msa1195720:intron 40.0%
ATGTGTTGGACAAGTGTCAT+AGG + chr8_1:44033979-44033998 Msa1195720:intron 40.0%
TCCTTTAAATGGCGATGCTT+AGG + chr8_1:44034165-44034184 Msa1195720:intron 40.0%
! ACCTAAGCATCGCCATTTAA+AGG - chr8_1:44034169-44034188 None:intergenic 40.0%
!!! ATCTCTAGGGTTTTGTCTCA+TGG - chr8_1:44034337-44034356 None:intergenic 40.0%
ATGTTTCCACTGCAGAAGTA+GGG + chr8_1:44034355-44034374 Msa1195720:CDS 40.0%
! AGCTCCATATCTCATTTTGG+GGG - chr8_1:44034456-44034475 None:intergenic 40.0%
ATCTTTAATTGAAAGGCGGG+GGG + chr8_1:44034578-44034597 Msa1195720:three_prime_UTR 40.0%
CAGTGAAGAATGGAATGGAA+TGG - chr8_1:44034630-44034649 None:intergenic 40.0%
!!! GCCGGTGTTGTATTGTTTTA+TGG + chr8_1:44034708-44034727 Msa1195720:three_prime_UTR 40.0%
! TTTGGCCAATAAGGTACCAA+AGG - chr8_1:44034786-44034805 None:intergenic 40.0%
TTGTTCCACTTTGGCCAATA+AGG - chr8_1:44034795-44034814 None:intergenic 40.0%
TGAAACAGAGGTTCAGTGAG+TGG - chr8_1:44030624-44030643 None:intergenic 45.0%
ATCTTACAGCGAAGGTAAGG+TGG - chr8_1:44030852-44030871 None:intergenic 45.0%
AGATAAACGATTGAACGCCG+CGG - chr8_1:44030893-44030912 None:intergenic 45.0%
TCAGGAGGAAGATCTTTGTG+AGG - chr8_1:44030936-44030955 None:intergenic 45.0%
AACTCTGCGAATTGCTTTGC+AGG + chr8_1:44031414-44031433 Msa1195720:intron 45.0%
GATGCATGTTCTTCCACTGT+CGG - chr8_1:44031451-44031470 None:intergenic 45.0%
AACATGCATCAAGCAGAGCA+AGG + chr8_1:44031461-44031480 Msa1195720:CDS 45.0%
!! GAGTTTGTCTGGTGTTGATC+TGG + chr8_1:44031609-44031628 Msa1195720:CDS 45.0%
!! TTCCAAGCTTCAGAAGCATC+AGG + chr8_1:44031760-44031779 Msa1195720:CDS 45.0%
!! AAGCTTCAGAAGCATCAGGA+GGG + chr8_1:44031764-44031783 Msa1195720:CDS 45.0%
! TCAGAGTGGGGATTCCTTTT+CGG + chr8_1:44031798-44031817 Msa1195720:CDS 45.0%
GAATTGGACTCTTCGTGAAC+AGG - chr8_1:44031859-44031878 None:intergenic 45.0%
GATTTCAATCCTTCAGCGTC+CGG + chr8_1:44031955-44031974 Msa1195720:CDS 45.0%
!! CGGTGAAGATGATTGGTTTC+AGG + chr8_1:44031975-44031994 Msa1195720:CDS 45.0%
GACCACGGATCTCTATCATA+CGG + chr8_1:44032056-44032075 Msa1195720:CDS 45.0%
TTCCGTATGATAGAGATCCG+TGG - chr8_1:44032061-44032080 None:intergenic 45.0%
!! TTGCTACTGGTTCGTCTACT+AGG + chr8_1:44032091-44032110 Msa1195720:CDS 45.0%
CGTCTACTAGGAATTTGGAC+TGG + chr8_1:44032103-44032122 Msa1195720:CDS 45.0%
! TAGGAATTTGGACTGGATGC+AGG + chr8_1:44032110-44032129 Msa1195720:CDS 45.0%
TCATCGGTAGCCTCAATATC+AGG - chr8_1:44032168-44032187 None:intergenic 45.0%
!!! CTGGACAGTTATGTTTTGGC+TGG - chr8_1:44032265-44032284 None:intergenic 45.0%
CTTCTAACAGGGACTTTGAC+TGG + chr8_1:44032349-44032368 Msa1195720:CDS 45.0%
TAACAGGGACTTTGACTGGA+TGG + chr8_1:44032353-44032372 Msa1195720:CDS 45.0%
CTGGCCAGTAATCTCTGAAT+TGG - chr8_1:44032511-44032530 None:intergenic 45.0%
GATGCAAAATGATCCATGGC+AGG + chr8_1:44032614-44032633 Msa1195720:CDS 45.0%
TGCAAAATGATCCATGGCAG+GGG + chr8_1:44032616-44032635 Msa1195720:CDS 45.0%
GGGAGCAATAACAAGGAAAC+TGG + chr8_1:44032636-44032655 Msa1195720:CDS 45.0%
ATCAGAGTGTGAAACGCTAC+TGG - chr8_1:44032742-44032761 None:intergenic 45.0%
!! ATTAGCACCCTCTGCTGTTT+TGG - chr8_1:44032814-44032833 None:intergenic 45.0%
ATGCCGACCCATTTGATGTA+TGG + chr8_1:44032925-44032944 Msa1195720:CDS 45.0%
GCTCCATACATCAAATGGGT+CGG - chr8_1:44032931-44032950 None:intergenic 45.0%
GACCCATTTGATGTATGGAG+CGG + chr8_1:44032930-44032949 Msa1195720:CDS 45.0%
AGCCGCTCCATACATCAAAT+GGG - chr8_1:44032935-44032954 None:intergenic 45.0%
AAGCCGCTCCATACATCAAA+TGG - chr8_1:44032936-44032955 None:intergenic 45.0%
! TTTAAAGTAGCAGCTGCAGG+TGG - chr8_1:44033164-44033183 None:intergenic 45.0%
! CTGTTTAAAGTAGCAGCTGC+AGG - chr8_1:44033167-44033186 None:intergenic 45.0%
!! CTGCAGCTGCTACTTTAAAC+AGG + chr8_1:44033165-44033184 Msa1195720:CDS 45.0%
AACTGACGCATCTAGGTAGT+AGG + chr8_1:44033400-44033419 Msa1195720:intron 45.0%
GGACCGTCAGCAAATGAAAT+TGG - chr8_1:44033432-44033451 None:intergenic 45.0%
TTTGTCTGAGTTGTCCGACA+CGG + chr8_1:44033857-44033876 Msa1195720:intron 45.0%
!! GTTATATAGGTGTCGGACAC+TGG + chr8_1:44033891-44033910 Msa1195720:intron 45.0%
GACACTTGTCCAACACATGT+CGG - chr8_1:44033977-44033996 None:intergenic 45.0%
! GACAAGTGTCATAGGAGTGT+CGG + chr8_1:44033987-44034006 Msa1195720:intron 45.0%
CTGCAGTGGAAACATCTCTA+GGG - chr8_1:44034350-44034369 None:intergenic 45.0%
TCTGCAGTGGAAACATCTCT+AGG - chr8_1:44034351-44034370 None:intergenic 45.0%
GATGTTTCCACTGCAGAAGT+AGG + chr8_1:44034354-44034373 Msa1195720:CDS 45.0%
! TTTTGACCCTACTTCTGCAG+TGG - chr8_1:44034364-44034383 None:intergenic 45.0%
TGGTACCTTATTGGCCAAAG+TGG + chr8_1:44034787-44034806 Msa1195720:three_prime_UTR 45.0%
AACAGAGGTTCAGTGAGTGG+TGG - chr8_1:44030621-44030640 None:intergenic 50.0%
GATTGGCGTCTTTGCGAAGA+AGG - chr8_1:44030740-44030759 None:intergenic 50.0%
GCAAAGACGCCAATCTGTCA+TGG + chr8_1:44030745-44030764 Msa1195720:CDS 50.0%
GAATGTGCTTCCCTTGATGC+TGG + chr8_1:44031075-44031094 Msa1195720:intron 50.0%
GCGAATTGCTTTGCAGGAGA+TGG + chr8_1:44031420-44031439 Msa1195720:intron 50.0%
GGAAATTCGATGGCCTTCTG+AGG + chr8_1:44031528-44031547 Msa1195720:CDS 50.0%
! AATTCGATGGCCTTCTGAGG+TGG + chr8_1:44031531-44031550 Msa1195720:CDS 50.0%
!! CTCCTGATGCTTCTGAAGCT+TGG - chr8_1:44031765-44031784 None:intergenic 50.0%
!! CAAGCTTCAGAAGCATCAGG+AGG + chr8_1:44031763-44031782 Msa1195720:CDS 50.0%
GGTCTGTAGAGGATCAGAGT+GGG + chr8_1:44031785-44031804 Msa1195720:CDS 50.0%
GTCTGTAGAGGATCAGAGTG+GGG + chr8_1:44031786-44031805 Msa1195720:CDS 50.0%
! CAGAGTGGGGATTCCTTTTC+GGG + chr8_1:44031799-44031818 Msa1195720:CDS 50.0%
!!! TGGGGATTCCTTTTCGGGTT+GGG + chr8_1:44031804-44031823 Msa1195720:CDS 50.0%
TCAAAGATAGATGGCCAGCC+TGG + chr8_1:44032021-44032040 Msa1195720:CDS 50.0%
TGGAAAGTCGGAAACGACCA+CGG + chr8_1:44032041-44032060 Msa1195720:CDS 50.0%
TGGTTTCACTCTCTTGCCAC+TGG - chr8_1:44032140-44032159 None:intergenic 50.0%
TCAGAGATTACTGGCCAGAC+TGG + chr8_1:44032513-44032532 Msa1195720:CDS 50.0%
CAGAGATTACTGGCCAGACT+GGG + chr8_1:44032514-44032533 Msa1195720:CDS 50.0%
! TTGTTATTGCTCCCCTGCCA+TGG - chr8_1:44032630-44032649 None:intergenic 50.0%
ATGGCAGGGGAGCAATAACA+AGG + chr8_1:44032629-44032648 Msa1195720:CDS 50.0%
GAGTGTGAAACGCTACTGGA+AGG - chr8_1:44032738-44032757 None:intergenic 50.0%
ACTGGATGCAAGGTGACCAA+TGG + chr8_1:44032856-44032875 Msa1195720:CDS 50.0%
GATGTATGGAGCGGCTTTAC+TGG + chr8_1:44032939-44032958 Msa1195720:CDS 50.0%
AGTACTCCTGCAGCAACCAA+TGG + chr8_1:44033137-44033156 Msa1195720:CDS 50.0%
GTGAGGAAACTGACGCATCT+AGG + chr8_1:44033393-44033412 Msa1195720:intron 50.0%
ATGAAGCATGGACTCCGACA+TGG + chr8_1:44033494-44033513 Msa1195720:intron 50.0%
AACACTCATACGAGCCGTGT+CGG - chr8_1:44033874-44033893 None:intergenic 50.0%
AATTGAAAGGCGGGGGGATA+TGG + chr8_1:44034584-44034603 Msa1195720:three_prime_UTR 50.0%
GGGGAGATGAGTATGACCTT+TGG + chr8_1:44034767-44034786 Msa1195720:three_prime_UTR 50.0%
TTTGGCGACGGTTTCTGCGA+CGG - chr8_1:44030817-44030836 None:intergenic 55.0%
CGAAGGATCGAGTTTGGCGA+CGG - chr8_1:44030829-44030848 None:intergenic 55.0%
AGGTGGCGAAGGATCGAGTT+TGG - chr8_1:44030835-44030854 None:intergenic 55.0%
TAAACGATTGAACGCCGCGG+AGG - chr8_1:44030890-44030909 None:intergenic 55.0%
AGTGCTCTCTCCACCTCAGA+AGG - chr8_1:44031544-44031563 None:intergenic 55.0%
AGCATCAGGAGGGTCTGTAG+AGG + chr8_1:44031774-44031793 Msa1195720:CDS 55.0%
GGGTCTGTAGAGGATCAGAG+TGG + chr8_1:44031784-44031803 Msa1195720:CDS 55.0%
!!! GTGGGGATTCCTTTTCGGGT+TGG + chr8_1:44031803-44031822 Msa1195720:CDS 55.0%
!!! GGATTCCTTTTCGGGTTGGG+AGG + chr8_1:44031807-44031826 Msa1195720:CDS 55.0%
TCATCTTCACCGGACGCTGA+AGG - chr8_1:44031967-44031986 None:intergenic 55.0%
CAGCGTCCGGTGAAGATGAT+TGG + chr8_1:44031968-44031987 Msa1195720:CDS 55.0%
AGATGGCCAGCCTGGAAAGT+CGG + chr8_1:44032029-44032048 Msa1195720:CDS 55.0%
TCGTTTCCGACTTTCCAGGC+TGG - chr8_1:44032038-44032057 None:intergenic 55.0%
GTGGTCGTTTCCGACTTTCC+AGG - chr8_1:44032042-44032061 None:intergenic 55.0%
ACTGGATGCAGGATGACCAG+TGG + chr8_1:44032121-44032140 Msa1195720:CDS 55.0%
! ACCAGAAGGGTCTTGTGTGC+CGG - chr8_1:44032235-44032254 None:intergenic 55.0%
ATGGACTCCGACATGGACAC+CGG + chr8_1:44033501-44033520 Msa1195720:intron 55.0%
TCAGTGTCCGGTGTCCATGT+CGG - chr8_1:44033511-44033530 None:intergenic 55.0%
ATGGACACCGGACACTGACA+CGG + chr8_1:44033513-44033532 Msa1195720:intron 55.0%
! GAAGTGTCCGTGTCAGTGTC+CGG - chr8_1:44033523-44033542 None:intergenic 55.0%
!! CTCTAGGACTAGCCGTGTCT+CGG - chr8_1:44034016-44034035 None:intergenic 55.0%
TGAAGCACGGACACACCTCT+AGG - chr8_1:44034032-44034051 None:intergenic 55.0%
CGGAAGGGAGGTTTGGGAGA+GGG - chr8_1:44030797-44030816 None:intergenic 60.0%
ACGGAAGGGAGGTTTGGGAG+AGG - chr8_1:44030798-44030817 None:intergenic 60.0%
CTGCGACGGAAGGGAGGTTT+GGG - chr8_1:44030803-44030822 None:intergenic 60.0%
TCTGCGACGGAAGGGAGGTT+TGG - chr8_1:44030804-44030823 None:intergenic 60.0%
CGACGGTTTCTGCGACGGAA+GGG - chr8_1:44030812-44030831 None:intergenic 60.0%
CAGCGAAGGTAAGGTGGCGA+AGG - chr8_1:44030846-44030865 None:intergenic 60.0%
TGCAATGGCAGACTCCTCCG+CGG + chr8_1:44030873-44030892 Msa1195720:CDS 60.0%
!! GGAGATGGTAGCACCGACAG+TGG + chr8_1:44031435-44031454 Msa1195720:intron 60.0%
! GTTGGCCTCCCAACCCGAAA+AGG - chr8_1:44031815-44031834 None:intergenic 60.0%
! GGTGGACCATTGGTTGCTGC+AGG - chr8_1:44033146-44033165 None:intergenic 60.0%
AGCAGCTGCAGGTGGACCAT+TGG - chr8_1:44033156-44033175 None:intergenic 60.0%
CTGACGGTCCCAACTGCCAA+GGG + chr8_1:44033442-44033461 Msa1195720:intron 60.0%
CACGGACACTTCGACATCGC+CGG + chr8_1:44033531-44033550 Msa1195720:intron 60.0%
!! AGGTGTCGGACACTGGTCCT+AGG + chr8_1:44033898-44033917 Msa1195720:intron 60.0%
!! GAGTGTCGGACACCGAGACA+CGG + chr8_1:44034001-44034020 Msa1195720:intron 60.0%
! CGAGACACGGCTAGTCCTAG+AGG + chr8_1:44034014-44034033 Msa1195720:intron 60.0%
CGGTTTCTGCGACGGAAGGG+AGG - chr8_1:44030809-44030828 None:intergenic 65.0%
GCGACGGTTTCTGCGACGGA+AGG - chr8_1:44030813-44030832 None:intergenic 65.0%
GCCGGCACACAAGACCCTTC+TGG + chr8_1:44032231-44032250 Msa1195720:CDS 65.0%
GCTGACGGTCCCAACTGCCA+AGG + chr8_1:44033441-44033460 Msa1195720:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 44030524 44034822 44030524 ID=Msa1195720;Name=Msa1195720
chr8_1 mRNA 44030524 44034822 44030524 ID=Msa1195720-mRNA-1;Parent=Msa1195720;Name=Msa1195720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=169|1|0.66|1|1|1|3|358|742
chr8_1 exon 44030524 44031022 44030524 ID=Msa1195720-mRNA-1:exon:14215;Parent=Msa1195720-mRNA-1
chr8_1 exon 44031436 44033186 44031436 ID=Msa1195720-mRNA-1:exon:14216;Parent=Msa1195720-mRNA-1
chr8_1 exon 44034317 44034822 44034317 ID=Msa1195720-mRNA-1:exon:14217;Parent=Msa1195720-mRNA-1
chr8_1 five_prime_UTR 44030524 44030692 44030524 ID=Msa1195720-mRNA-1:five_prime_utr;Parent=Msa1195720-mRNA-1
chr8_1 CDS 44030693 44031022 44030693 ID=Msa1195720-mRNA-1:cds;Parent=Msa1195720-mRNA-1
chr8_1 CDS 44031436 44033186 44031436 ID=Msa1195720-mRNA-1:cds;Parent=Msa1195720-mRNA-1
chr8_1 CDS 44034317 44034464 44034317 ID=Msa1195720-mRNA-1:cds;Parent=Msa1195720-mRNA-1
chr8_1 three_prime_UTR 44034465 44034822 44034465 ID=Msa1195720-mRNA-1:three_prime_utr;Parent=Msa1195720-mRNA-1
Gene Sequence

>Msa1195720

ATGGCGTTCGAAATACCAATAGATCAAATAAAGCAGTTACAGATCCTTCTTCGCAAAGACGCCAATCTGTCATGGTACAATCCACAAAATGACGAAAATCTCCCTCTCCCAAACCTCCCTTCCGTCGCAGAAACCGTCGCCAAACTCGATCCTTCGCCACCTTACCTTCGCTGTAAGATTTGCAATGGCAGACTCCTCCGCGGCGTTCAATCGTTTATCTGTGTCTTTTGTGGTGCAAATCCTCACAAAGATCTTCCTCCTGAAGCTATTAAATTTAAGAATACTGTTGGGTATCGTTGGTTGCTTGAATCTCTTCAACTTGATGGATCGGAGATGGTAGCACCGACAGTGGAAGAACATGCATCAAGCAGAGCAAGGAGTGAATTAAACGATGAGATTCCTTTATCTGAACTACTGGATTTGGAAATTCGATGGCCTTCTGAGGTGGAGAGAGCACTGTCAAGTAATTCAGATTTGGAAGCATTTCCGGGTGAAAGTTCGTTGAGTTTGTCTGGTGTTGATCTGGATAGTTTTTTTGATCGGAGAGAATCTGATTTCAATGTGTCTGAGCAGAATTTGGCTTTTGAAAGAAATGTAGGTGGTGCTTCAGATAACACTTTCCAAGCAAATGAGAATCTTAGTTTGTTTCAGAATTTCCAAGCTTCAGAAGCATCAGGAGGGTCTGTAGAGGATCAGAGTGGGGATTCCTTTTCGGGTTGGGAGGCCAACTTCAAGTCTGCTAGTTCTGCTCCTGTTCACGAAGAGTCCAATTCAGTCGATCATTCTAAAGTTGAATTGGATACGGTATCTGGATATGGGAAAGATTCTGACGGTGTAAAGGAGAAAGATGATTTCAATCCTTCAGCGTCCGGTGAAGATGATTGGTTTCAGGGTGATGAATTCCAAACTTCTAACTCAAAGATAGATGGCCAGCCTGGAAAGTCGGAAACGACCACGGATCTCTATCATACGGAAAAAGAAGAAATTGCTACTGGTTCGTCTACTAGGAATTTGGACTGGATGCAGGATGACCAGTGGCAAGAGAGTGAAACCAAGATACCTGATATTGAGGCTACCGATGAAGAAGATGATTCATTTGATGCATGGAATGATTTTACTGGCTCAGCCGGCACACAAGACCCTTCTGGTATTATTTCCAGCCAAAACATAACTGTCCAGATGGGAAATTTTGAATTTTCTGCAGATCTGAGTGATACAAAAACAGCAGAGGATGCTAATAGTTCTTCTAACAGGGACTTTGACTGGATGGAAAATGATCAACGACAAGATAATGATAACAGGACAATTGATAATGTTGGTACTGATGAAGGTTCTTATTCATTTGATTCATGGAATGATTTCACTGGCTCAGCCACTACACAATATCCTTCACATAGTGTTTCCAATTCAGAGATTACTGGCCAGACTGGGAAATTTGAAATGACTGAAGATCCTAATGATACAAAAATTGCAGAAAGTGCTGATGGTTCATCTAGTAATTTTGACTGGATGCAAAATGATCCATGGCAGGGGAGCAATAACAAGGAAACTGGTATTACGGCTACTAACGAAGTCACTGATTCATTTGATGCATGGAATGATTTTACTGGTTCAGCCTTTTCACAAAATCCTTCCAGTAGCGTTTCACACTCTGATATAAAAGACCAGACTGGCATATCTGAAATTACTGCTGATCTTCATGATACCAAAACAGCAGAGGGTGCTAATGCTTCTTCTGTTAAAAGTTTTGACTGGATGCAAGGTGACCAATGGCAAGTTAGCAATAACAAAACAACCGATAGTGTGACTACTAACGATAATGCCGACCCATTTGATGTATGGAGCGGCTTTACTGGCTTGACCACTAAACAAGAAGATCCTTTCCGTAACATTCCTGTACAAACTGTGAATCAAACTCCATCTGAAAAGACCTTTGAAATGGATTTATTTGGATCATCAAACAACTCACATGATATGGATTTTAGTGGATTTTCACAGAATGATTTTTTAGGACAGTTTGATAATGCACTGAGTACTCCTGCAGCAACCAATGGTCCACCTGCAGCTGCTACTTTAAACAGGGTGGCTGATGATGATACCATGAGACAAAACCCTAGAGATGTTTCCACTGCAGAAGTAGGGTCAAAAGATGATGTAGAGATGTTGATGTCACAGATGCATGATCTCTCATTTATGCTTGAGTGCAATCTTTCATTTCCCCCAAAATGA
Protein sequence

>Msa1195720

MAFEIPIDQIKQLQILLRKDANLSWYNPQNDENLPLPNLPSVAETVAKLDPSPPYLRCKICNGRLLRGVQSFICVFCGANPHKDLPPEAIKFKNTVGYRWLLESLQLDGSEMVAPTVEEHASSRARSELNDEIPLSELLDLEIRWPSEVERALSSNSDLEAFPGESSLSLSGVDLDSFFDRRESDFNVSEQNLAFERNVGGASDNTFQANENLSLFQNFQASEASGGSVEDQSGDSFSGWEANFKSASSAPVHEESNSVDHSKVELDTVSGYGKDSDGVKEKDDFNPSASGEDDWFQGDEFQTSNSKIDGQPGKSETTTDLYHTEKEEIATGSSTRNLDWMQDDQWQESETKIPDIEATDEEDDSFDAWNDFTGSAGTQDPSGIISSQNITVQMGNFEFSADLSDTKTAEDANSSSNRDFDWMENDQRQDNDNRTIDNVGTDEGSYSFDSWNDFTGSATTQYPSHSVSNSEITGQTGKFEMTEDPNDTKIAESADGSSSNFDWMQNDPWQGSNNKETGITATNEVTDSFDAWNDFTGSAFSQNPSSSVSHSDIKDQTGISEITADLHDTKTAEGANASSVKSFDWMQGDQWQVSNNKTTDSVTTNDNADPFDVWSGFTGLTTKQEDPFRNIPVQTVNQTPSEKTFEMDLFGSSNNSHDMDFSGFSQNDFLGQFDNALSTPAATNGPPAAATLNRVADDDTMRQNPRDVSTAEVGSKDDVEMLMSQMHDLSFMLECNLSFPPK*