AlfalfaGEDB | Msa1197870

M. sativa cultivar zhongmu-4 / Msa1197870

KEGG: -
GO: GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009893 GO:0009987 GO:0010033 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0043902 GO:0044237 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0098542 GO:1900424 GO:1900426 GO:1901700 GO:1901701 GO:1902477 GO:1902479 GO:2000377 GO:2000379
PFAM: PF00139.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197870	PNY10161.1	77.134	656	139	6	1	648	1	653	0.0	1033

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197870	sp\|Q9LXA5\|LRK91_ARATH	55.775	658	263	12	8	648	5	651	0.0	693

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197870	A0A2K3P4E2	77.134	656	139	6	1	648	1	653	0.0	1033

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1197870	Msa1251570	0.892479	1.528542e-74	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197870	MtrunA17_Chr8g0366991	72.515	684	149	6	1	648	101	781	0.0	989
Msa1197870	MtrunA17_Chr8g0366981	70.948	654	142	7	1	648	1	612	0.0	931
Msa1197870	MtrunA17_Chr8g0366971	81.347	386	63	3	267	648	6	386	0.0	619
Msa1197870	MtrunA17_Chr8g0367071	51.558	642	283	9	4	629	17	646	0.0	616
Msa1197870	MtrunA17_Chr8g0366931	82.493	337	58	1	312	648	1	336	0.0	592
Msa1197870	MtrunA17_Chr4g0049601	48.044	639	310	11	3	626	14	645	0.0	581
Msa1197870	MtrunA17_Chr4g0049581	50.788	571	253	10	64	626	89	639	0.0	532
Msa1197870	MtrunA17_Chr4g0049551	48.892	632	290	16	22	630	31	652	2.53e-175	514
Msa1197870	MtrunA17_Chr7g0274651	45.177	622	307	13	42	636	52	666	4.32e-175	514
Msa1197870	MtrunA17_Chr4g0049561	47.405	578	289	7	61	630	69	639	2.18e-171	504

Showing 1 to 10 of 505 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197870	AT5G10530.1	55.775	658	263	12	8	648	5	651	0.0	693
Msa1197870	AT5G65600.1	51.310	649	286	14	23	648	34	675	0.0	601
Msa1197870	AT5G06740.1	39.262	596	326	14	62	643	68	641	7.02e-126	387
Msa1197870	AT5G06740.2	39.262	596	326	14	62	643	80	653	1.18e-125	387
Msa1197870	AT4G02410.1	36.741	626	356	12	22	619	24	637	2.02e-120	373
Msa1197870	AT2G37710.1	37.133	579	331	8	63	619	62	629	1.04e-119	372
Msa1197870	AT3G53810.1	36.393	621	360	10	22	619	22	630	1.51e-119	371
Msa1197870	AT4G02420.1	36.177	633	372	12	10	619	9	632	4.64e-115	359
Msa1197870	AT3G55550.1	38.316	582	318	13	64	619	62	628	1.90e-114	358
Msa1197870	AT5G55830.1	35.323	620	360	13	41	626	45	657	2.50e-114	358

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Find 151 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGAGCAGGGCCAAGG+AGG	0.618735	8_1:+49062241	Msa1197870:CDS
AAATGCATAATCTTCTGTCT+TGG	0.468572	8_1:+49062019	Msa1197870:CDS
AAATTAATAGACCATGAACT+TGG	0.434759	8_1:+49062741	Msa1197870:CDS
AACAAAGTAGTGTATGGCCA+TGG	0.575784	8_1:+49061580	Msa1197870:CDS
AACCCGCCAGAAGAATTGGG+TGG	0.663371	8_1:-49061640	None:intergenic
AAGAAACCCGCCAGAAGAAT+TGG	0.314580	8_1:-49061644	None:intergenic
AAGAGAAGGGAATGATTGAG+TGG	0.552583	8_1:+49062925	Msa1197870:CDS
AAGGAAAGTCTTACCTGAAT+GGG	0.421194	8_1:+49061957	Msa1197870:CDS
AAGGGTTGTGTATGCCAAAA+AGG	0.347073	8_1:+49061483	Msa1197870:CDS
AAGGTATTACTATGGGACTC+AGG	0.606669	8_1:+49061502	Msa1197870:CDS

Showing 1 to 10 of 151 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAGTGAAGAATATAAATGAG+AGG	-	chr8_1:49061327-49061346	None:intergenic	30.0%
TAGGATTAACACTAGGAATT+CGG	-	chr8_1:49061372-49061391	None:intergenic	30.0%
ACTCAAAACAAAGTAGTGTA+TGG	+	chr8_1:49061574-49061593	Msa1197870:CDS	30.0%
ATTCTTACGCAAATACTGAA+TGG	+	chr8_1:49061728-49061747	Msa1197870:CDS	30.0%
TTCTTACGCAAATACTGAAT+GGG	+	chr8_1:49061729-49061748	Msa1197870:CDS	30.0%
CAATAACTCAATCATTTCGT+CGG	+	chr8_1:49061780-49061799	Msa1197870:CDS	30.0%
CCAAGATACACTTAAATTCT+TGG	-	chr8_1:49061878-49061897	None:intergenic	30.0%
CCAAGAATTTAAGTGTATCT+TGG	+	chr8_1:49061875-49061894	Msa1197870:CDS	30.0%
AAATGCATAATCTTCTGTCT+TGG	+	chr8_1:49062019-49062038	Msa1197870:CDS	30.0%
AATGCATAATCTTCTGTCTT+GGG	+	chr8_1:49062020-49062039	Msa1197870:CDS	30.0%

Showing 1 to 10 of 350 entries

Previous1 2 3 4 5…35Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	49061289	49063235	49061289	ID=Msa1197870;Name=Msa1197870
chr8_1	mRNA	49061289	49063235	49061289	ID=Msa1197870-mRNA-1;Parent=Msa1197870;Name=Msa1197870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|648
chr8_1	exon	49061289	49063235	49061289	ID=Msa1197870-mRNA-1:exon:15358;Parent=Msa1197870-mRNA-1
chr8_1	CDS	49061289	49063235	49061289	ID=Msa1197870-mRNA-1:cds;Parent=Msa1197870-mRNA-1

Gene Sequence

>Msa1197870

ATGGCTCCAAATTTCCATGTCCTTCTTCTCTTCTTCCTCTCATTTATATTCTTCACTCTTCCTACTAATTCAATTCACTTCCGAATTCCTAGTGTTAATCCTAGTGATACTAGCGGTGTCTACCAAGGATCTGCAGCACTTCGTGATGGACAAGTTAATTTCAACATTAAAGACAAGTATACGAGTCAAGTTGGAAGGGTTGTGTATGCCAAAAAGGTATTACTATGGGACTCAGGCACAAGTCAACTCAGTGACTTCACAACTCGTTTCAATTTCAATATTGACACTCAAAACAAAGTAGTGTATGGCCATGGACTGGCCTTTTTCATTGCTCCGGTTGGATTTGAAATTCCACCCAATTCTTCTGGCGGGTTTCTTGGCCTATTCAACACCACCACAATGGATTCGTCTAATAACCAAATTGTTCTTGTCGAGTTTGATTCTTACGCAAATACTGAATGGGGTGAGACAACAGAGCATGTGGGAATCAACAATAACTCAATCATTTCGTCGGTGATGACACCTTGGAATGCTAGCTTACATAGTGGAGACAATGCTGAGGTATGTATTAACTACAATTCTATAACCAAGAATTTAAGTGTATCTTGGAAATACCAAAGCACTTTTTATCCTCAAGAAAAAACTAGTCTTTCGTATCAAATTGATTTAAGGAAAGTCTTACCTGAATGGGTCACCATAGGATTTTCAGCTGCAACAGGTGCGGTTGGAGAAATGCATAATCTTCTGTCTTGGGAATTCAGTTCCACTTTAGACCAAAGTGATAATGATAATAGTATAAAAAGGACAAGATTACTTTTGATTCTAAGTGGGGTTGTACTAGTGGGATTGGGGGTGGGACTGGGAGCACTTGCAACATATGCATTACTTAGGAGAAAGACAAAGATCAGGAGTAAAAAACAAAAGGAAGAGTCTATGAATGATGATGAGCTTGAAAGAGGAGCAGGGCCAAGGAGGTTCACCAACAAAGAACTTAATTTGGCCACCAATAACTTCTCTATGGATAGAAAGTTGGGTCAAGGAGGTTTTGGAGCTGTTTTTAAAGGTTACTATTTTGATCAAGATTTATCCGTTGCTGTGAAGAAAATATCGAAGGGATCTAGACAAGGGAAGAAAGAGTACGTTACTGAAGTTAAAGTCATTAGTCAACTGAGACACCGAAATCTTGTGAAGTTGTTAGGTTGGTGCCATGAAAATGATGAGTATCTTCTTGTTTATGAATTTATGCCAAACGGTAGCCTTGATTCTCATTTATTTGGTAAAAGGGCACCTCTTCCTTGGAGTTTAAGGCACGAAATAGTTCTTGGATTGGCATCTGGTGTGCTTTATCTACATGAAGAATGGGAGAGATGTGTGGTACATAGGGATATTAAATCAAGTAATGTTATGTTAGATTCTAGTTTCAATGTCAAGCTTGGGGATTTTGGATTGGCTAAATTAATAGACCATGAACTTGGGCCACAAACAACTGTGCTAGCTGGAACAATTGGCTATCTAGCTCCAGAATATGTAAGTACATGCAGAGCCAGTAAGGAGTCGGATGTTTATAGTTTTGGAATAGTTGTCTTGGAGATTACAACAGGAAAGAAAGCTACTGAAGTTATGAAGGAAAAAGATGAAGAGAAGGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAAATACTTGTGGCAATGGATGAGAATTTGAAAAAGGATTTTGATGAGAAACAAGTGGAGTGTTTGTTGATTGTTGGATTGTGGTGTGCTCATCCTGATGTGAATCTAAGACCATCAATTAGACAAGCAATTCGAGTTCTTAATTTTGAGGTTACCATGCCAAATCTTCCACCAAAGAGACCTGTTGCAACTTATCATGTGCCTACACCGTCTGTAAACTCGGTAGCAACTTCCATAACTACAAGCCTTCAGGATGGTCGTTAA

Protein sequence

>Msa1197870

MAPNFHVLLLFFLSFIFFTLPTNSIHFRIPSVNPSDTSGVYQGSAALRDGQVNFNIKDKYTSQVGRVVYAKKVLLWDSGTSQLSDFTTRFNFNIDTQNKVVYGHGLAFFIAPVGFEIPPNSSGGFLGLFNTTTMDSSNNQIVLVEFDSYANTEWGETTEHVGINNNSIISSVMTPWNASLHSGDNAEVCINYNSITKNLSVSWKYQSTFYPQEKTSLSYQIDLRKVLPEWVTIGFSAATGAVGEMHNLLSWEFSSTLDQSDNDNSIKRTRLLLILSGVVLVGLGVGLGALATYALLRRKTKIRSKKQKEESMNDDELERGAGPRRFTNKELNLATNNFSMDRKLGQGGFGAVFKGYYFDQDLSVAVKKISKGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHENDEYLLVYEFMPNGSLDSHLFGKRAPLPWSLRHEIVLGLASGVLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLIDHELGPQTTVLAGTIGYLAPEYVSTCRASKESDVYSFGIVVLEITTGKKATEVMKEKDEEKGMIEWVWDHYGRGEILVAMDENLKKDFDEKQVECLLIVGLWCAHPDVNLRPSIRQAIRVLNFEVTMPNLPPKRPVATYHVPTPSVNSVATSITTSLQDGR*