AlfalfaGEDB | Msa1203040

M. sativa cultivar zhongmu-4 / Msa1203040

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019722 GO:0019932 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0090351 GO:0097305 GO:0097306 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203040	AET03947.1	91.654	671	39	2	2	664	3	664	0.0	1186

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203040	sp\|Q8GX23\|PERK5_ARATH	59.611	463	150	8	215	668	207	641	0.0	547

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203040	G7LEU4	91.654	671	39	2	2	664	3	664	0.0	1186

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1203040	Msa1255320	0.909200	7.403503e-82	-8.615850e-47
Msa1203040	Msa1295960	0.960794	5.814948e-119	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203040	MtrunA17_Chr8g0373501	91.654	671	39	2	2	664	3	664	0.0	1186
Msa1203040	MtrunA17_Chr5g0403891	65.549	537	153	9	131	662	69	578	0.0	623
Msa1203040	MtrunA17_Chr3g0144481	66.282	347	113	3	314	658	66	410	2.95e-167	486
Msa1203040	MtrunA17_Chr5g0413511	58.721	344	127	4	325	664	47	379	1.44e-142	421
Msa1203040	MtrunA17_Chr7g0221191	47.966	467	187	9	198	662	298	710	2.35e-141	430
Msa1203040	MtrunA17_Chr6g0485721	62.963	297	106	2	325	620	86	379	4.92e-132	395
Msa1203040	MtrunA17_Chr0c01g0489481	46.368	468	197	6	198	665	234	647	1.09e-128	394
Msa1203040	MtrunA17_Chr7g0262521	50.676	296	138	5	320	611	329	620	7.75e-94	306
Msa1203040	MtrunA17_Chr7g0251771	50.676	296	136	5	321	611	35	325	4.02e-92	291
Msa1203040	MtrunA17_Chr5g0443121	48.447	322	154	5	298	613	142	457	2.46e-91	293

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203040	AT4G34440.2	59.611	463	150	8	215	668	207	641	0.0	547
Msa1203040	AT4G34440.1	59.611	463	150	8	215	668	207	641	0.0	547
Msa1203040	AT3G24550.1	69.167	360	103	6	313	668	256	611	3.77e-177	519
Msa1203040	AT1G52290.1	64.553	347	114	5	325	667	131	472	4.82e-165	483
Msa1203040	AT3G18810.1	66.667	372	120	3	292	663	293	660	8.22e-161	479
Msa1203040	AT1G23540.1	50.210	476	189	12	197	660	245	684	1.50e-150	453
Msa1203040	AT3G24540.1	65.909	308	103	2	315	621	161	467	2.16e-150	444
Msa1203040	AT1G70460.1	49.462	465	192	10	197	655	234	661	2.16e-144	437
Msa1203040	AT1G10620.1	45.386	531	232	14	127	655	204	678	1.68e-138	422
Msa1203040	AT5G38560.1	48.305	472	189	13	198	665	239	659	3.86e-137	417

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Find 225 sgRNAs with CRISPR-Local

Find 644 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTAAAAGCGGGTAG+CGG	0.573445	8_1:-56797710	Msa1203040:CDS
AAACACCACTTCCTCCATTA+GGG	0.342760	8_1:+56797975	None:intergenic
AAATACCAACGACTAAAAGA+AGG	0.578322	8_1:+56799559	None:intergenic
AAATCTCCAGCGCCGCAGAC+CGG	0.572881	8_1:-56796221	Msa1203040:CDS
AAATCTGATGTATTCTCATT+TGG	0.304225	8_1:-56796716	Msa1203040:CDS
AACAATCCAACCCCTTCAGG+AGG	0.629550	8_1:-56799783	Msa1203040:CDS
AACAATCCAACTCCTTCTGG+AGG	0.628800	8_1:-56799891	Msa1203040:CDS
AACAATCCAGCCCATTCAGG+AGG	0.622732	8_1:-56799756	Msa1203040:CDS
AACAATCCAGCCCCTTCAGG+AGG	0.622732	8_1:-56799837	Msa1203040:CDS
AACAATCCATCTCCTTCTGG+AGG	0.619990	8_1:-56799918	Msa1203040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCACATAGTACAAATAAGG+AGG	-	chr8_1:56796666-56796685	Msa1203040:CDS	30.0%
AAATACCAACGACTAAAAGA+AGG	+	chr8_1:56796735-56796754	None:intergenic	30.0%
ATCTCTTTCAAAACACTCTT+GGG	+	chr8_1:56797001-56797020	None:intergenic	30.0%
TATCTCTTTCAAAACACTCT+TGG	+	chr8_1:56797002-56797021	None:intergenic	30.0%
TCATTTCATACGAAAATGAC+GGG	-	chr8_1:56797393-56797412	Msa1203040:intron	30.0%
TACCTAAACTATTTGGTCAA+GGG	+	chr8_1:56797721-56797740	None:intergenic	30.0%
ATACCTAAACTATTTGGTCA+AGG	+	chr8_1:56797722-56797741	None:intergenic	30.0%
AGTCAGTCATGTCTTAATTT+AGG	-	chr8_1:56797824-56797843	Msa1203040:CDS	30.0%
TTTGTTGAACTCTAACAACA+TGG	+	chr8_1:56798295-56798314	None:intergenic	30.0%
TTTCACCACTATTCATTAGA+GGG	+	chr8_1:56798355-56798374	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	56796109	56800204	56796109	ID=Msa1203040;Name=Msa1203040
chr8_1	mRNA	56796109	56800204	56796109	ID=Msa1203040-mRNA-1;Parent=Msa1203040;Name=Msa1203040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|1\|1\|8\|0\|668
chr8_1	exon	56799484	56800204	56799484	ID=Msa1203040-mRNA-1:exon:18564;Parent=Msa1203040-mRNA-1
chr8_1	exon	56797555	56798103	56797555	ID=Msa1203040-mRNA-1:exon:18563;Parent=Msa1203040-mRNA-1
chr8_1	exon	56797291	56797377	56797291	ID=Msa1203040-mRNA-1:exon:18562;Parent=Msa1203040-mRNA-1
chr8_1	exon	56797124	56797194	56797124	ID=Msa1203040-mRNA-1:exon:18561;Parent=Msa1203040-mRNA-1
chr8_1	exon	56796894	56796970	56796894	ID=Msa1203040-mRNA-1:exon:18560;Parent=Msa1203040-mRNA-1
chr8_1	exon	56796637	56796781	56796637	ID=Msa1203040-mRNA-1:exon:18559;Parent=Msa1203040-mRNA-1
chr8_1	exon	56796391	56796555	56796391	ID=Msa1203040-mRNA-1:exon:18558;Parent=Msa1203040-mRNA-1
chr8_1	exon	56796109	56796300	56796109	ID=Msa1203040-mRNA-1:exon:18557;Parent=Msa1203040-mRNA-1
chr8_1	CDS	56799484	56800204	56799484	ID=Msa1203040-mRNA-1:cds;Parent=Msa1203040-mRNA-1
chr8_1	CDS	56797555	56798103	56797555	ID=Msa1203040-mRNA-1:cds;Parent=Msa1203040-mRNA-1
chr8_1	CDS	56797291	56797377	56797291	ID=Msa1203040-mRNA-1:cds;Parent=Msa1203040-mRNA-1
chr8_1	CDS	56797124	56797194	56797124	ID=Msa1203040-mRNA-1:cds;Parent=Msa1203040-mRNA-1
chr8_1	CDS	56796894	56796970	56796894	ID=Msa1203040-mRNA-1:cds;Parent=Msa1203040-mRNA-1
chr8_1	CDS	56796637	56796781	56796637	ID=Msa1203040-mRNA-1:cds;Parent=Msa1203040-mRNA-1
chr8_1	CDS	56796391	56796555	56796391	ID=Msa1203040-mRNA-1:cds;Parent=Msa1203040-mRNA-1
chr8_1	CDS	56796109	56796300	56796109	ID=Msa1203040-mRNA-1:cds;Parent=Msa1203040-mRNA-1

Gene Sequence

>Msa1203040

ATGCCACACAACAACAGTCCGGATAATTCCTCGCCCGATAACGCTACACCTGACGACGCTGATGGATCAGATTCTAGAAATTCCTCTCCTTCCGGAGGAGGGAGCAATCCACCTCCTTCTGATGGAGGGAGCAACCCACCTCCTTCGGATGGAGGGAGCAATCCAACTCCTTCTGATGGAGGGAGCAACCCACCTCCTTCGGATGGAGGGAGCAACCCACCTCCTTCGGATGGAGGAAACGTTTCACCTCCTTCTGGAGGAGGAAACAATCCATCTCCTTCTGGAGGAGGGAACAATCCAACTCCTTCTGGAGGAGGGAACATTTCTCCTCCTTCAGGAGGAGGGAACAATCCAGCCCCTTCAGGAGGAGGAGGAAACAATTCACCTTCAGGAGGCGGGAACAATCCAACCCCTTCAGGAGGAGGGAACAATCCAGCCCATTCAGGAGGAGGGAACAATTCACCTTCTGGAGGAGGGAACAATTCTCCTTCATCACAAAAACCAGGTTCAGGAGGAGGGAACAATTCACCTTCTGTAGGAGAGAACAATTCTTCTGAATCACATAGTACAAATAAGGAGGATAATAGTAATGTACTAGTTGGAGTTATTGTTGGATCAGTTGTCCTTCTTTTAGTCGTTGGTATTTGTCTCATTTGCTCGAGGAGAAAGAAGAGAAAGCAACCTTATTATTATGGTCCTCCAGATCCTTCACTTGCAAAAGGGAACAATTATTACAACAGTGGACAACATCCTCCTCCTCATCCAAATTGGCAAGGACCTCCATCAGGCCCACATGGAATGGACCATGTTGTTAGAGTTCAACAAAACCCTAATGGAGGAAGTGGTGTTTGGGGTGCACCACACCCTCTAATGAATAGTGGTGAAATGAGTTCTAATTACTCCTATGGAATGGGACCACCAGGTTCTATGCAATCTTCTCCAGGACTATCTCTTACTCTCAAGGGTGGTACCTTCACTTATGAAGAATTGGCATCTGCTACTAAAGGTTTTGCTAATGAGAATATTATAGGACAAGGTGGTTTTGGTTATGTCCATAAGGGAATTTTGCCTACTGGAAAGGAAATTGCTGTTAAAAGTTTAAAAGCGGGTAGCGGACAAGGCGAACGTGAGTTTCAAGCTGAGATTGATATCATTAGTCGTGTTCATCATCGTCATCTTGTGTCGCTTGTTGGATATTGTGTTTCTGGTGGACAGAGAATGTTGGTTTATGAATTTGTTCCAAATAAAACTTTGGAATATCACCTTCATGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGAGAATTGCACTAGGATCTGCTAGAGGACTTGCTTACCTTCATGAAGATTGTAGTCCTCGCATTATCCACCGTGATATTAAGGCTGCTAATGTTCTAATTGATGATAGCTTCGAAGCTAAGGTGGCTGATTTTGGATTGGCAAAGTTGACTACTGATACTAATACACACGTCTCAACTCGTGTCATGGGAACATTCGGGTATATGGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTATTCTCATTTGGGGTTATGCTACTAGAACTCTTAACTGGAAAAAGACCTTTGGATTTAACCAATGCCATGGACGAAAGCTTAGTTGACTGGGCTCGACCACTTTTGAGTCGTGCATTGGAGGAGGATGGAAACTTTGCAGAATTGGTGGATCCATTTTTGGAAGGAAATTACGATCATCAAGAAATGATAAGATTGGCAGCTTGTGCTGCTAGTAGCATTCGTCATTCTGCTAAAAAGCGTTCAAAAATGAGCCAGATAGTAAGAGCATTAGAAGGAGATGTATCACTAGAAGACTTGAAGGAAAGCATGATAAAATCTCCAGCGCCGCAGACCGGTGTTTATACCTCTTCAGGCTCAGAATATGATACAATGCAATACAATGCAGATATGGCAAAGTTCAGAAAACAAATAATGTCAGGTCAAGAATTTGATAGCGGTGAACACTAG

Protein sequence

>Msa1203040

MPHNNSPDNSSPDNATPDDADGSDSRNSSPSGGGSNPPPSDGGSNPPPSDGGSNPTPSDGGSNPPPSDGGSNPPPSDGGNVSPPSGGGNNPSPSGGGNNPTPSGGGNISPPSGGGNNPAPSGGGGNNSPSGGGNNPTPSGGGNNPAHSGGGNNSPSGGGNNSPSSQKPGSGGGNNSPSVGENNSSESHSTNKEDNSNVLVGVIVGSVVLLLVVGICLICSRRKKRKQPYYYGPPDPSLAKGNNYYNSGQHPPPHPNWQGPPSGPHGMDHVVRVQQNPNGGSGVWGAPHPLMNSGEMSSNYSYGMGPPGSMQSSPGLSLTLKGGTFTYEELASATKGFANENIIGQGGFGYVHKGILPTGKEIAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCVSGGQRMLVYEFVPNKTLEYHLHGKGVPTMDWPTRMRIALGSARGLAYLHEDCSPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELLTGKRPLDLTNAMDESLVDWARPLLSRALEEDGNFAELVDPFLEGNYDHQEMIRLAACAASSIRHSAKKRSKMSQIVRALEGDVSLEDLKESMIKSPAPQTGVYTSSGSEYDTMQYNADMAKFRKQIMSGQEFDSGEH*