AlfalfaGEDB | Msa1203230

M. sativa cultivar zhongmu-4 / Msa1203230

KEGG: K11419|K11420
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0005488 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0032259 GO:0032268 GO:0033043 GO:0033044 GO:0034968 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1900109 GO:1901363 GO:1901564 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF05033.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203230	XP_013446422.1	94.944	534	26	1	1	534	1	533	0.0	1048

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203230	sp\|O64827\|SUVR5_ARATH	56.757	296	112	5	248	534	1089	1377	1.66e-93	314
Msa1203230	sp\|O64827\|SUVR5_ARATH	35.294	136	80	2	65	192	408	543	8.78e-17	87.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203230	A0A072TSH8	94.944	534	26	1	1	534	1	533	0.0	1048

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TFs/TRs:

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Gene ID	Type	Classification
Msa1203230	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0885280	Msa1203230	0.802574	5.259295e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203230	MtrunA17_Chr8g0373821	94.944	534	26	1	1	534	1	533	0.0	1048
Msa1203230	MtrunA17_Chr5g0403241	63.636	319	103	4	225	534	1188	1502	4.23e-126	402
Msa1203230	MtrunA17_Chr5g0403241	43.448	145	75	1	64	201	492	636	1.76e-29	124
Msa1203230	MtrunA17_Chr4g0075321	66.875	320	96	5	223	534	742	1059	5.31e-126	394
Msa1203230	MtrunA17_Chr4g0075321	44.400	250	104	3	13	240	326	562	1.40e-45	172
Msa1203230	MtrunA17_Chr8g0373841	58.468	248	59	4	6	240	20	236	2.41e-78	254
Msa1203230	MtrunA17_Chr5g0399801	37.788	217	104	6	343	534	874	1084	2.59e-35	141
Msa1203230	MtrunA17_Chr4g0003501	36.916	214	108	6	343	534	742	950	4.40e-34	137
Msa1203230	MtrunA17_Chr4g0003511	37.674	215	107	6	343	534	837	1047	2.85e-33	135
Msa1203230	MtrunA17_Chr7g0255181	32.450	302	156	13	248	534	432	700	7.40e-31	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203230	AT2G23740.1	56.757	296	112	5	248	534	1082	1370	1.45e-94	314
Msa1203230	AT2G23740.1	35.294	136	80	2	65	192	401	536	8.39e-18	87.8
Msa1203230	AT2G23740.3	56.757	296	112	5	248	534	1089	1377	1.69e-94	314
Msa1203230	AT2G23740.3	35.294	136	80	2	65	192	408	543	8.93e-18	87.8
Msa1203230	AT2G23740.6	56.757	296	112	5	248	534	1089	1377	1.69e-94	314
Msa1203230	AT2G23740.6	35.294	136	80	2	65	192	408	543	8.93e-18	87.8
Msa1203230	AT2G23740.2	56.757	296	112	5	248	534	1089	1377	1.69e-94	314
Msa1203230	AT2G23740.2	35.294	136	80	2	65	192	408	543	8.93e-18	87.8
Msa1203230	AT2G23740.4	58.369	233	84	4	248	474	1089	1314	3.70e-74	256
Msa1203230	AT2G23740.4	35.294	136	80	2	65	192	408	543	8.34e-18	87.8

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Find 116 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGGGTCGTCGCGAA+AGG	0.515962	8_1:-57293479	Msa1203230:CDS
AAAGCTGAAGAAAATTGCGG+TGG	0.708696	8_1:-57293691	Msa1203230:CDS
AAAGTAAGCACTCCCATTTG+TGG	0.515955	8_1:-57293841	Msa1203230:CDS
AAATGGTCGAATCATATTGG+AGG	0.599006	8_1:-57292847	Msa1203230:intron
AAATGTTGAGGTTCTCGTAA+AGG	0.502271	8_1:+57291366	None:intergenic
AACATTTAAAGTGTCCAATA+AGG	0.399037	8_1:-57291280	Msa1203230:three_prime_UTR
AACTCTGTAATCCACAAGAT+TGG	0.362412	8_1:+57291682	None:intergenic
AAGAATTGGCTTTGTCACAT+AGG	0.511032	8_1:+57293321	None:intergenic
AATAATACTTCGATTCACAA+AGG	0.669953	8_1:+57291169	None:intergenic
ACACATTGAACATCTCGTTG+AGG	0.704374	8_1:-57291199	Msa1203230:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTCTGATATAGAAAACCAA+AGG	-	chr8_1:57291204-57291223	Msa1203230:three_prime_UTR	30.0%
GTCTGATATAGAAAACCAAA+GGG	-	chr8_1:57291205-57291224	Msa1203230:three_prime_UTR	30.0%
GTATATATTGCTACCAATTG+TGG	+	chr8_1:57291393-57291412	None:intergenic	30.0%
TACAAAAAGAAAATCCAGGA+CGG	+	chr8_1:57291517-57291536	None:intergenic	30.0%
CTCTTACAAAAAGAAAATCC+AGG	+	chr8_1:57291521-57291540	None:intergenic	30.0%
ATAGCAGGTTAAATATTGTC+GGG	+	chr8_1:57292287-57292306	None:intergenic	30.0%
GATGAAGAAAAGGACATATT+TGG	-	chr8_1:57292390-57292409	Msa1203230:intron	30.0%
TGTAAATGGTCGAATCATAT+TGG	-	chr8_1:57292443-57292462	Msa1203230:intron	30.0%
TAACATATTCAGAACAGCAT+GGG	+	chr8_1:57292513-57292532	None:intergenic	30.0%
TTAACATATTCAGAACAGCA+TGG	+	chr8_1:57292514-57292533	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	57291101	57294214	57291101	ID=Msa1203230;Name=Msa1203230
chr8_1	mRNA	57291101	57294214	57291101	ID=Msa1203230-mRNA-1;Parent=Msa1203230;Name=Msa1203230-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0\|1\|0.85\|1\|0.83\|0.85\|7\|293\|534
chr8_1	exon	57291101	57291486	57291101	ID=Msa1203230-mRNA-1:exon:18684;Parent=Msa1203230-mRNA-1
chr8_1	exon	57291625	57291712	57291625	ID=Msa1203230-mRNA-1:exon:18683;Parent=Msa1203230-mRNA-1
chr8_1	exon	57292067	57292198	57292067	ID=Msa1203230-mRNA-1:exon:18682;Parent=Msa1203230-mRNA-1
chr8_1	exon	57292291	57292394	57292291	ID=Msa1203230-mRNA-1:exon:18681;Parent=Msa1203230-mRNA-1
chr8_1	exon	57292476	57292592	57292476	ID=Msa1203230-mRNA-1:exon:18680;Parent=Msa1203230-mRNA-1
chr8_1	exon	57292848	57292997	57292848	ID=Msa1203230-mRNA-1:exon:18679;Parent=Msa1203230-mRNA-1
chr8_1	exon	57293294	57294214	57293294	ID=Msa1203230-mRNA-1:exon:18678;Parent=Msa1203230-mRNA-1
chr8_1	CDS	57293294	57294214	57293294	ID=Msa1203230-mRNA-1:cds;Parent=Msa1203230-mRNA-1
chr8_1	CDS	57292848	57292997	57292848	ID=Msa1203230-mRNA-1:cds;Parent=Msa1203230-mRNA-1
chr8_1	CDS	57292476	57292592	57292476	ID=Msa1203230-mRNA-1:cds;Parent=Msa1203230-mRNA-1
chr8_1	CDS	57292291	57292394	57292291	ID=Msa1203230-mRNA-1:cds;Parent=Msa1203230-mRNA-1
chr8_1	CDS	57292067	57292198	57292067	ID=Msa1203230-mRNA-1:cds;Parent=Msa1203230-mRNA-1
chr8_1	CDS	57291625	57291712	57291625	ID=Msa1203230-mRNA-1:cds;Parent=Msa1203230-mRNA-1
chr8_1	CDS	57291394	57291486	57291394	ID=Msa1203230-mRNA-1:cds;Parent=Msa1203230-mRNA-1
chr8_1	three_prime_UTR	57291101	57291393	57291101	ID=Msa1203230-mRNA-1:three_prime_utr;Parent=Msa1203230-mRNA-1

Gene Sequence

>Msa1203230

ATGGCAATGCTTCATAATGAAGAACATATTTGCGTTGTAAATCGCGAATATGATATATCGAAAATGGATGATGAACTCAGCGACAGTTCAGTTGTAATGAAAGAGTCTGATATAGAAAACCAAAGGGATTCACTTAGCTTGCAAGAATCTACAGAAATGATCTCGTATAGCAATGGAACAGTATCAAGGCCTGTGGATGAAATGGCTATTCAAATATTTGTAGAACCTGGTACCAAGGATCGACAATGTCGAGCATATGTCAAAGACAAGGGAAGGCAGTGTGTGAGAACCACAATTGGTAGCAATATATACTGTTGTGCTCATTTCTCAAACAAAAGAGAAAGACGTCTTAAAGTAAGCACTCCCATTTGTGGAGGTACAACTGGTTCTGGTAATAGCTGTAAGTATCGTTCCCGTCCTGGATTTTCTTTTTGTAAGAGACATTGGCACAAAGCCGAGACGGGCCAGACCTCAAATTCAAACCGTCGTACATTAAAGAGGAAAGCTGAAGAAAATTGCGGTGGTTCCCAGAACCTGATTTGCATGGACTTGGTGTTGGCACATCCGGAAAGTCCATTGGAGATCAATCCAGTGTCGGTCATCAATGATGTTGATCCTTTCTTTGCAAAGAACATCTCAGGCGAAATGCTCAAGCTTTCTGGTAATGATCATAATGAAGACTCTTGTATTGATAATGAGAATGCTGTTAAGGAAAAATTAGGGTCGTCGCGAAAGGTTATAGTGTTATGCAATGACCTAAGCTTTGCGGCAGAATCAACTCCTGTGATATGTGTAGTAGATCTACAAGTACTAAATTATCTTTGTGAGCAAGAGAGATATGTATATCTTCCTAAGCCTTGGGAGATGTTTACCTATGTGACAAAGCCAATTCTTCATCAATTGCGTAGTCTTGATTCTGAGGATCTGCAACTGTCTTGTAATTGCTTATATTCTACTTGCTGTCCTGAAACGTGTGATCACGTATACCTTTTTGATGAAGAAAAGGACATATTTGGGAAACCAATGGCCGGAAGGTTCGCATACGATGTAAATGGTCGAATCATATTGGAGGAAGGTAGTTTTGTCTTCGAGTGTAACGATAAGTGCGGATGCAATAAAACCTGTCCAAACAGAATATTGCAGAACGGAGTTCGTGTTAAATTGGAGGTCTTTATGACAGAGAAAAAGGGATTCGGAGTAAGGGCTGGCGAAGCTATTTTGCGTGGCACGTTTGTGTGTGAGTACATTGGTGAAGTTTTAGAGCAGCAGGAGGCACACAACAGACGCGGAAGCAAAGAAAATTGCAGTTATTTCTTAGACATTGATGCTCGTGCTAACCATATGAGTAGATTGGTCGAAGGACATCCCCGATATGTCATTGATTCTACTACATATGGCAATGTGTCTAGGTTCATCAATAACAGCTGTTCACCCAATCTTGTGGATTACAGAGTTATTGTAGAGGGCACGGATTGTAAGCATACACATATCGGTCTTTACGCAAGTCGAGATATTGCTTTGCATGAAGAATTGACATATAATTATGACTATGAGCCTGTGCTCGGAGAAGGATATCCTTGTCTTTGTGGATCTTTGAAATGCTGA

Protein sequence

>Msa1203230

MAMLHNEEHICVVNREYDISKMDDELSDSSVVMKESDIENQRDSLSLQESTEMISYSNGTVSRPVDEMAIQIFVEPGTKDRQCRAYVKDKGRQCVRTTIGSNIYCCAHFSNKRERRLKVSTPICGGTTGSGNSCKYRSRPGFSFCKRHWHKAETGQTSNSNRRTLKRKAEENCGGSQNLICMDLVLAHPESPLEINPVSVINDVDPFFAKNISGEMLKLSGNDHNEDSCIDNENAVKEKLGSSRKVIVLCNDLSFAAESTPVICVVDLQVLNYLCEQERYVYLPKPWEMFTYVTKPILHQLRSLDSEDLQLSCNCLYSTCCPETCDHVYLFDEEKDIFGKPMAGRFAYDVNGRIILEEGSFVFECNDKCGCNKTCPNRILQNGVRVKLEVFMTEKKGFGVRAGEAILRGTFVCEYIGEVLEQQEAHNRRGSKENCSYFLDIDARANHMSRLVEGHPRYVIDSTTYGNVSRFINNSCSPNLVDYRVIVEGTDCKHTHIGLYASRDIALHEELTYNYDYEPVLGEGYPCLCGSLKC*