AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1203690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203690 MtrunA17_Chr8g0374571 97.015 201 6 0 6 206 163 363 3.88e-145 408
Msa1203690 MtrunA17_Chr4g0045371 72.139 201 55 1 6 205 163 363 7.76e-106 308
Msa1203690 MtrunA17_Chr5g0402661 78.500 200 41 2 6 205 158 355 9.69e-104 303
Msa1203690 MtrunA17_Chr1g0162301 74.257 202 50 2 6 205 164 365 1.34e-99 293
Msa1203690 MtrunA17_Chr4g0055451 57.071 198 73 2 6 200 145 333 8.00e-77 234
Msa1203690 MtrunA17_Chr8g0381821 64.162 173 61 1 6 178 144 315 1.27e-74 228
Msa1203690 MtrunA17_Chr5g0426521 57.143 189 72 3 6 188 144 329 5.13e-72 221
Msa1203690 MtrunA17_Chr2g0277501 61.538 169 64 1 6 173 144 312 1.51e-70 218
Msa1203690 MtrunA17_Chr3g0131061 64.151 159 56 1 6 163 144 302 4.28e-70 217
Msa1203690 MtrunA17_Chr5g0399911 54.497 189 76 4 6 184 159 347 1.37e-67 211
Msa1203690 MtrunA17_Chr8g0385281 61.635 159 60 1 6 163 145 303 2.00e-67 210
Msa1203690 MtrunA17_Chr3g0123791 57.471 174 69 2 6 175 145 317 7.63e-67 209
Msa1203690 MtrunA17_Chr4g0055431 56.395 172 67 1 8 171 153 324 8.78e-67 207
Msa1203690 MtrunA17_Chr8g0380661 50.000 170 81 3 6 173 141 308 5.32e-52 169
Msa1203690 MtrunA17_Chr6g0468751 44.954 109 54 2 19 127 174 276 6.65e-25 101
Msa1203690 MtrunA17_Chr3g0132671 43.243 111 57 2 20 130 205 309 1.63e-24 100
Msa1203690 MtrunA17_Chr6g0453681 43.750 112 57 2 19 130 174 279 5.75e-24 98.6
Msa1203690 MtrunA17_Chr4g0013131 41.880 117 58 3 10 126 164 270 1.17e-22 94.7
Msa1203690 MtrunA17_Chr4g0001331 45.000 100 49 2 23 122 181 274 4.59e-22 92.8
Msa1203690 MtrunA17_Chr1g0166101 35.570 149 82 4 9 153 176 314 7.01e-22 92.0
Msa1203690 MtrunA17_Chr8g0379091 41.000 100 54 2 23 122 187 281 1.63e-21 91.7
Msa1203690 MtrunA17_Chr7g0244521 42.857 119 54 5 10 126 164 270 1.66e-21 91.3
Msa1203690 MtrunA17_Chr1g0150321 42.735 117 57 3 10 126 165 271 2.19e-21 90.9
Msa1203690 MtrunA17_Chr2g0333821 43.000 100 51 2 23 122 175 268 4.44e-21 90.1
Msa1203690 MtrunA17_Chr4g0063881 41.739 115 60 3 20 133 168 276 8.39e-21 89.4
Msa1203690 MtrunA17_Chr5g0441011 43.396 106 54 2 20 125 172 271 1.23e-20 89.0
Msa1203690 MtrunA17_Chr5g0432491 39.806 103 56 2 23 125 185 281 3.73e-20 87.4
Msa1203690 MtrunA17_Chr2g0284011 37.500 120 64 3 11 125 156 269 5.21e-20 87.0
Msa1203690 MtrunA17_Chr6g0453671 36.667 120 69 3 9 127 163 276 1.05e-19 85.9
Msa1203690 MtrunA17_Chr5g0432471 32.353 170 89 3 10 179 164 307 1.41e-19 85.9
Msa1203690 MtrunA17_Chr8g0346071 37.736 106 60 2 19 124 173 272 6.72e-19 84.0
Msa1203690 MtrunA17_Chr2g0284031 38.462 104 58 2 23 126 192 289 6.74e-19 84.0
Msa1203690 MtrunA17_Chr3g0114511 31.319 182 115 5 8 189 176 347 8.01e-19 83.6
Msa1203690 MtrunA17_Chr1g0188031 30.500 200 119 8 8 202 172 356 1.08e-18 83.2
Msa1203690 MtrunA17_Chr3g0107011 39.815 108 59 2 19 126 171 272 2.32e-18 82.4
Msa1203690 MtrunA17_Chr2g0326531 36.449 107 62 2 19 125 283 383 3.18e-18 81.6
Msa1203690 MtrunA17_Chr7g0244561 33.846 130 78 3 23 152 179 300 3.63e-18 81.6
Msa1203690 MtrunA17_Chr8g0346081 37.736 106 60 2 19 124 173 272 4.76e-18 81.6
Msa1203690 MtrunA17_Chr2g0304111 37.736 106 60 2 20 125 182 281 6.58e-18 81.3
Msa1203690 MtrunA17_Chr2g0302431 37.864 103 58 2 20 122 179 275 7.12e-18 81.3
Msa1203690 MtrunA17_Chr4g0069301 39.806 103 56 2 20 122 185 281 3.26e-17 79.0
Msa1203690 MtrunA17_Chr3g0107051 38.835 103 57 2 23 125 182 278 3.70e-17 79.0
Msa1203690 MtrunA17_Chr5g0428031 37.288 118 67 3 16 132 162 273 4.56e-17 78.6
Msa1203690 MtrunA17_Chr7g0274941 39.423 104 61 2 22 125 176 277 2.60e-16 75.5
Msa1203690 MtrunA17_Chr4g0029241 33.645 107 65 2 19 125 281 381 4.19e-15 72.8
Msa1203690 MtrunA17_Chr4g0074111 54.386 57 22 1 10 66 170 222 5.88e-15 72.4
Msa1203690 MtrunA17_Chr1g0205421 35.849 106 62 2 23 128 173 272 1.07e-14 72.0
Msa1203690 MtrunA17_Chr1g0176751 28.426 197 118 7 7 203 274 447 2.65e-13 67.8
Msa1203690 MtrunA17_Chr1g0190131 34.906 106 66 2 20 125 165 267 3.82e-13 66.6
Msa1203690 MtrunA17_Chr3g0132591 36.275 102 61 3 22 123 264 361 6.88e-13 66.6
Msa1203690 MtrunA17_Chr8g0385341 29.386 228 120 12 9 206 176 392 8.63e-13 66.2
Msa1203690 MtrunA17_Chr8g0353621 31.193 109 70 2 17 125 161 264 1.64e-12 64.7
Msa1203690 MtrunA17_Chr1g0176421 38.614 101 56 4 22 121 323 418 2.56e-12 65.1
Msa1203690 MtrunA17_Chr5g0444171 35.577 104 63 3 19 122 251 350 5.66e-12 63.9
Msa1203690 MtrunA17_Chr8g0338741 37.736 106 58 3 17 122 246 343 1.05e-11 63.2
Msa1203690 MtrunA17_Chr5g0441691 35.043 117 69 3 9 122 214 326 1.06e-11 63.2
Msa1203690 MtrunA17_Chr1g0157131 33.010 103 65 2 19 121 233 331 1.50e-11 62.8
Msa1203690 MtrunA17_Chr3g0125381 29.091 110 73 2 16 125 105 209 1.58e-11 61.2
Msa1203690 MtrunA17_Chr3g0135951 39.623 106 57 4 20 122 300 401 2.38e-11 62.0
Msa1203690 MtrunA17_Chr4g0074811 28.877 187 109 8 19 203 250 414 3.41e-11 61.6
Msa1203690 MtrunA17_Chr5g0397101 36.893 103 61 3 19 121 226 324 4.51e-11 61.2
Msa1203690 MtrunA17_Chr3g0140631 30.000 110 72 2 16 125 187 291 6.19e-11 60.5
Msa1203690 MtrunA17_Chr4g0018201 35.455 110 62 5 17 122 943 1047 9.96e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203690 AT3G50500.1 76.000 200 48 0 6 205 163 362 1.09e-103 303
Msa1203690 AT5G66880.1 76.500 200 47 0 6 205 162 361 1.85e-103 303
Msa1203690 AT5G66880.2 76.500 200 47 0 6 205 162 361 1.85e-103 303
Msa1203690 AT3G50500.2 76.650 197 46 0 9 205 173 369 5.40e-103 302
Msa1203690 AT4G33950.1 69.307 202 60 1 6 205 161 362 1.47e-95 283
Msa1203690 AT4G33950.2 69.274 179 55 0 6 184 161 339 1.59e-91 272
Msa1203690 AT5G08590.2 61.963 163 62 0 8 170 70 232 3.59e-72 220
Msa1203690 AT5G08590.1 61.212 165 64 0 6 170 144 308 1.50e-71 221
Msa1203690 AT5G63650.1 60.947 169 65 1 6 173 144 312 1.30e-70 219
Msa1203690 AT1G78290.3 62.658 158 54 1 6 163 144 296 2.07e-67 210
Msa1203690 AT1G78290.2 62.658 158 54 1 6 163 144 296 2.07e-67 210
Msa1203690 AT1G60940.1 58.580 169 69 1 6 173 144 312 1.14e-66 209
Msa1203690 AT1G60940.2 58.580 169 69 1 6 173 144 312 1.14e-66 209
Msa1203690 AT1G10940.1 60.625 160 60 2 6 163 144 302 5.86e-66 207
Msa1203690 AT1G10940.2 60.625 160 60 2 6 163 152 310 5.86e-66 207
Msa1203690 AT4G40010.1 62.048 166 59 1 6 167 144 309 3.73e-64 202
Msa1203690 AT2G23030.1 51.042 192 69 4 6 183 144 324 7.37e-60 191
Msa1203690 AT5G25110.1 43.220 118 57 3 9 126 194 301 2.51e-26 105
Msa1203690 AT5G10930.1 44.068 118 56 3 9 126 164 271 3.85e-26 104
Msa1203690 AT3G29160.3 43.750 112 57 2 19 130 175 280 2.99e-25 101
Msa1203690 AT3G29160.1 43.750 112 57 2 19 130 175 280 1.00e-24 101
Msa1203690 AT3G29160.2 43.750 112 57 2 19 130 175 280 1.00e-24 101
Msa1203690 AT3G01090.3 44.037 109 55 2 19 127 174 276 2.75e-24 99.8
Msa1203690 AT3G01090.1 44.037 109 55 2 19 127 174 276 2.75e-24 99.8
Msa1203690 AT3G01090.2 44.037 109 55 2 19 127 197 299 3.02e-24 99.8
Msa1203690 AT5G58380.1 40.984 122 62 3 7 128 161 272 3.92e-23 96.7
Msa1203690 AT2G34180.1 43.269 104 53 2 23 126 218 315 1.10e-22 95.5
Msa1203690 AT5G21326.1 32.447 188 105 6 20 199 172 345 3.14e-22 93.6
Msa1203690 AT4G24400.2 41.739 115 60 3 19 132 165 273 6.60e-22 92.8
Msa1203690 AT4G24400.1 37.143 140 76 4 19 152 165 298 9.50e-22 92.4
Msa1203690 AT2G30360.1 32.192 146 91 3 23 166 184 323 1.42e-21 92.0
Msa1203690 AT5G45820.1 35.526 152 76 5 10 160 164 294 1.99e-21 91.7
Msa1203690 AT5G01810.1 40.171 117 60 3 10 126 164 270 6.78e-21 89.7
Msa1203690 AT5G01810.2 40.171 117 60 3 10 126 164 270 6.78e-21 89.7
Msa1203690 AT1G30270.3 33.793 145 77 4 10 154 87 212 7.87e-21 89.4
Msa1203690 AT5G01810.3 40.171 117 60 3 10 126 164 270 8.18e-21 89.4
Msa1203690 AT3G23000.1 35.075 134 77 3 8 141 176 299 1.48e-20 89.0
Msa1203690 AT1G30270.1 34.028 144 76 4 10 153 184 308 1.52e-20 89.4
Msa1203690 AT1G30270.2 33.793 145 77 4 10 154 184 309 1.98e-20 89.0
Msa1203690 AT5G39440.1 40.984 122 63 5 11 130 164 278 2.70e-20 88.6
Msa1203690 AT5G07070.1 37.705 122 66 3 7 128 161 272 3.23e-20 88.2
Msa1203690 AT2G25090.1 41.228 114 57 3 13 126 179 282 6.35e-20 87.4
Msa1203690 AT4G30960.1 38.261 115 61 3 10 124 176 280 1.07e-19 86.7
Msa1203690 AT1G29230.1 42.308 104 54 2 23 126 235 332 1.35e-19 86.7
Msa1203690 AT5G35410.2 33.735 166 82 5 19 183 167 305 2.88e-19 85.1
Msa1203690 AT5G35410.1 33.735 166 82 5 19 183 167 305 4.29e-19 84.7
Msa1203690 AT2G26980.1 31.383 188 107 5 20 199 173 346 6.36e-19 84.0
Msa1203690 AT2G26980.4 31.383 188 107 5 20 199 183 356 9.77e-19 84.0
Msa1203690 AT2G26980.3 31.383 188 107 5 20 199 173 346 1.03e-18 84.0
Msa1203690 AT5G21222.1 40.336 119 65 2 20 138 172 284 1.05e-18 84.3
Msa1203690 AT5G21222.2 40.336 119 65 2 20 138 172 284 1.05e-18 84.3
Msa1203690 AT5G21222.4 40.336 119 65 2 20 138 172 284 1.05e-18 84.3
Msa1203690 AT5G21222.3 40.336 119 65 2 20 138 172 284 1.05e-18 84.3
Msa1203690 AT2G26980.5 31.383 188 107 5 20 199 173 346 1.07e-18 83.6
Msa1203690 AT4G18700.1 38.462 104 58 2 23 126 187 284 1.73e-18 83.2
Msa1203690 AT1G01140.2 36.207 116 66 3 10 125 172 279 2.13e-18 82.8
Msa1203690 AT1G01140.3 37.736 106 60 2 20 125 178 277 3.38e-18 82.4
Msa1203690 AT1G01140.1 36.207 116 64 3 10 125 172 277 3.83e-18 82.0
Msa1203690 AT5G45810.1 39.423 104 57 1 23 126 189 286 7.54e-18 81.3
Msa1203690 AT1G48260.2 38.261 115 61 3 8 122 77 181 8.40e-18 80.5
Msa1203690 AT1G48260.4 38.261 115 61 3 8 122 77 181 8.40e-18 80.5
Msa1203690 AT1G48260.3 38.261 115 61 3 8 122 77 181 8.40e-18 80.5
Msa1203690 AT1G48260.5 38.261 115 61 3 8 122 77 181 8.40e-18 80.5
Msa1203690 AT2G38490.1 45.000 100 49 2 23 122 189 282 1.42e-17 80.5
Msa1203690 AT1G48260.1 38.261 115 61 3 8 122 162 266 1.69e-17 80.1
Msa1203690 AT3G17510.2 39.806 103 56 2 20 122 99 195 2.81e-17 79.3
Msa1203690 AT3G17510.1 39.806 103 56 2 20 122 179 275 5.53e-17 79.0
Msa1203690 AT4G14580.1 35.833 120 67 3 10 129 175 284 1.47e-16 77.4
Msa1203690 AT5G57630.3 38.793 116 58 4 14 122 67 176 6.52e-16 75.1
Msa1203690 AT5G57630.1 38.793 116 58 4 14 122 155 264 1.34e-15 74.7
Msa1203690 AT5G57630.2 38.793 116 58 4 14 122 155 264 1.43e-15 74.7
Msa1203690 AT2G45490.1 33.051 118 73 3 9 125 164 276 4.30e-15 72.4
Msa1203690 AT3G45240.3 33.962 106 64 2 17 122 267 366 1.60e-14 71.6
Msa1203690 AT3G45240.2 33.962 106 64 2 17 122 270 369 1.67e-14 71.6
Msa1203690 AT3G45240.1 33.962 106 64 2 17 122 270 369 1.67e-14 71.6
Msa1203690 AT5G01820.1 41.000 100 53 2 23 122 183 276 3.65e-14 70.9
Msa1203690 AT5G60550.1 33.945 109 64 3 17 123 269 371 5.91e-14 70.1
Msa1203690 AT4G35310.2 28.780 205 122 8 22 206 259 459 1.16e-13 69.3
Msa1203690 AT4G35310.1 28.780 205 122 8 22 206 259 459 1.16e-13 69.3
Msa1203690 AT2G26980.2 53.704 54 25 0 20 73 173 226 2.02e-13 67.8
Msa1203690 AT1G12580.1 38.235 102 59 3 20 121 204 301 3.69e-13 67.8
Msa1203690 AT4G04740.2 35.606 132 64 6 19 149 228 339 5.18e-13 67.4
Msa1203690 AT3G53930.1 27.027 148 95 5 17 155 171 314 5.50e-13 67.4
Msa1203690 AT3G53930.2 27.027 148 95 5 17 155 171 314 5.50e-13 67.4
Msa1203690 AT1G76040.1 35.593 118 66 4 5 121 23 131 6.93e-13 66.6
Msa1203690 AT1G76040.4 35.593 118 66 4 5 121 23 131 6.93e-13 66.6
Msa1203690 AT4G04740.4 35.606 132 64 6 19 149 228 339 6.95e-13 67.0
Msa1203690 AT4G04740.6 35.606 132 64 6 19 149 228 339 6.95e-13 67.0
Msa1203690 AT4G04740.5 35.606 132 64 6 19 149 228 339 6.95e-13 67.0
Msa1203690 AT4G04740.3 35.606 132 64 6 19 149 228 339 6.95e-13 67.0
Msa1203690 AT4G04740.1 35.606 132 64 6 19 149 228 339 6.95e-13 67.0
Msa1203690 AT4G04740.7 35.606 132 64 6 19 149 228 339 6.95e-13 67.0
Msa1203690 AT2G17290.1 26.442 208 129 7 19 206 244 447 1.40e-12 66.2
Msa1203690 AT2G17290.2 26.442 208 129 7 19 206 244 447 1.40e-12 66.2
Msa1203690 AT3G04530.1 30.000 120 79 4 7 124 155 271 1.89e-12 65.1
Msa1203690 AT4G23650.1 35.922 103 62 2 19 121 237 335 3.13e-12 65.1
Msa1203690 AT5G12180.1 35.577 104 63 2 19 122 232 331 3.44e-12 65.1
Msa1203690 AT1G76040.2 37.500 104 59 3 19 121 271 369 5.12e-12 64.7
Msa1203690 AT5G66210.6 27.128 188 101 8 22 201 226 385 5.61e-12 64.3
Msa1203690 AT5G66210.4 27.128 188 101 8 22 201 226 385 5.61e-12 64.3
Msa1203690 AT5G66210.5 27.128 188 101 8 22 201 226 385 5.71e-12 64.3
Msa1203690 AT1G76040.3 38.614 101 56 3 22 121 274 369 6.57e-12 64.3
Msa1203690 AT5G66210.3 27.128 188 101 8 22 201 226 385 7.19e-12 63.9
Msa1203690 AT5G66210.1 27.128 188 101 8 22 201 226 385 7.51e-12 63.9
Msa1203690 AT5G66210.2 27.128 188 101 8 22 201 226 385 7.51e-12 63.9
Msa1203690 AT5G19360.1 36.538 104 62 3 19 122 227 326 9.43e-12 63.9
Msa1203690 AT1G50700.2 26.486 185 116 4 19 203 232 396 1.74e-11 63.2
Msa1203690 AT1G50700.3 26.486 185 116 4 19 203 232 396 1.87e-11 62.8
Msa1203690 AT1G50700.1 26.486 185 116 4 19 203 232 396 2.21e-11 62.8
Msa1203690 AT2G38910.1 35.644 101 59 4 22 121 296 391 2.71e-11 62.4
Msa1203690 AT4G04720.2 30.952 168 100 8 19 181 239 395 3.27e-11 62.0
Msa1203690 AT4G04720.1 30.952 168 100 8 19 181 239 395 3.27e-11 62.0
Msa1203690 AT5G23580.1 35.294 102 62 2 22 123 184 281 3.56e-11 62.0
Msa1203690 AT5G04870.1 37.000 100 59 3 22 121 312 407 4.08e-11 62.0
Msa1203690 AT2G35890.2 36.275 102 59 4 22 122 294 390 4.97e-11 61.6
Msa1203690 AT2G35890.1 36.275 102 59 4 22 122 294 390 4.97e-11 61.6
Msa1203690 AT5G09890.1 40.336 119 55 7 20 131 303 412 6.39e-11 61.2
Msa1203690 AT5G09890.2 40.336 119 55 7 20 131 303 412 6.58e-11 61.2

Find 58 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTTATGTTTCCAGATTT+CGG 0.181694 8_1:+58506034 None:intergenic
CATTTATGTTTCCAGATTTC+GGG 0.194266 8_1:+58506035 None:intergenic
CTGTTCTTTAGACCAGTTTA+TGG 0.214077 8_1:-58505874 Msa1203690:CDS
CCGAAATCTGGAAACATAAA+TGG 0.268326 8_1:-58506034 Msa1203690:CDS
GACGTACCTGTATTGTCTTC+CGG 0.321443 8_1:+58506404 None:intergenic
ATGCTCTGCATGGGTTGTTC+AGG 0.328116 8_1:+58505948 None:intergenic
CTAACGAGCCAAAAGATTTC+CGG 0.335396 8_1:-58506423 Msa1203690:CDS
GAATTACCATGCCCGAAATC+TGG 0.337853 8_1:-58506046 Msa1203690:CDS
TCCCACTAGCATCACATATA+AGG 0.360117 8_1:+58506465 None:intergenic
AATATCAGATTGCAGATGTT+TGG 0.368115 8_1:-58506501 Msa1203690:intron
ATTGTCTTCCGGAAATCTTT+TGG 0.371133 8_1:+58506415 None:intergenic
TATGGCAGATAACATTGATA+TGG 0.371735 8_1:-58505856 Msa1203690:CDS
TCTTGTCTCAGTAATACTTC+TGG 0.371789 8_1:+58507427 None:intergenic
CCTGATGGATGAGAAGATAA+TGG 0.383428 8_1:-58505988 Msa1203690:CDS
CAATGTTATCTGCCATAAAC+TGG 0.397580 8_1:+58505862 None:intergenic
GTTGTTCAGGCTCTTCAAAT+TGG 0.399845 8_1:+58505961 None:intergenic
TGAAATAGAATTACCTCTGC+AGG 0.402412 8_1:+58506212 None:intergenic
GGAGTTATCTGAACATTGTC+TGG 0.404108 8_1:+58506275 None:intergenic
AAATCTTGCAATCTGATTGC+TGG 0.413208 8_1:-58507519 None:intergenic
CATTGTCTGGAATGGAATAC+TGG 0.414186 8_1:+58506288 None:intergenic
TTGCAGATGTTTGGTCTTGT+GGG 0.431939 8_1:-58506492 Msa1203690:CDS
CATAAACTGGTCTAAAGAAC+AGG 0.436956 8_1:+58505875 None:intergenic
CCATTATCTTCTCATCCATC+AGG 0.452041 8_1:+58505988 None:intergenic
ATTGCAGATGTTTGGTCTTG+TGG 0.459164 8_1:-58506493 Msa1203690:CDS
CTGATGGATGAGAAGATAAT+GGG 0.462801 8_1:-58505987 Msa1203690:CDS
AAAGAACAGGTTCCAGCTGC+TGG 0.474162 8_1:+58505888 None:intergenic
CTTCTCATCCATCAGGTCCA+TGG 0.482992 8_1:+58505995 None:intergenic
GGACGATGAATTTGATGACT+TGG 0.504824 8_1:-58505835 Msa1203690:CDS
ATGTTTCCAGATTTCGGGCA+TGG 0.508660 8_1:+58506040 None:intergenic
AAACAAAGATCCTTGAGATA+AGG 0.518593 8_1:+58506240 None:intergenic
GAATCTTCCCATGGACCTGA+TGG 0.527579 8_1:-58506003 Msa1203690:CDS
GGCTCGTTAGGATCTTCAAA+GGG 0.529141 8_1:+58506436 None:intergenic
TATCTGAACATTGTCTGGAA+TGG 0.532634 8_1:+58506280 None:intergenic
TTCTCATCCATCAGGTCCAT+GGG 0.534172 8_1:+58505996 None:intergenic
GGAGTTCCCACAGTTGACTT+CGG 0.543928 8_1:+58507463 None:intergenic
GAGATAAGGTGGCGACACTC+TGG 0.544860 8_1:+58506254 None:intergenic
AGCTTGATATAGATAGCAGT+GGG 0.546051 8_1:-58505800 Msa1203690:CDS
GATTGCATCAATGCTCTGCA+TGG 0.560991 8_1:+58505938 None:intergenic
ACCTTATATGTGATGCTAGT+GGG 0.561501 8_1:-58506466 Msa1203690:CDS
TGGCTCGTTAGGATCTTCAA+AGG 0.567136 8_1:+58506435 None:intergenic
GAAGCTACTATACCAGCAGC+TGG 0.572547 8_1:-58505900 Msa1203690:CDS
AGATTTCCGGAAGACAATAC+AGG 0.575071 8_1:-58506410 Msa1203690:intron
AACCTTATATGTGATGCTAG+TGG 0.585559 8_1:-58506467 Msa1203690:CDS
CAAAGATCCTTGAGATAAGG+TGG 0.586558 8_1:+58506243 None:intergenic
ACTTCTGGAGCAATATATGC+CGG 0.588989 8_1:+58507442 None:intergenic
ACTGCTATCTATATCAAGCT+CGG 0.589298 8_1:+58505803 None:intergenic
GAGACAAGAGTATGATGGAA+AGG 0.595695 8_1:-58507413 Msa1203690:intron
GAAGTCAACTGTGGGAACTC+CGG 0.597475 8_1:-58507461 Msa1203690:CDS
GAAATAGAATTACCTCTGCA+GGG 0.608085 8_1:+58506213 None:intergenic
GTTTCTGAAGAATCTTCCCA+TGG 0.616978 8_1:-58506012 Msa1203690:CDS
AGTGTCGCCACCTTATCTCA+AGG 0.619082 8_1:-58506250 Msa1203690:CDS
ATTGCATCAATGCTCTGCAT+GGG 0.629588 8_1:+58505939 None:intergenic
TTCACAACCGAAGTCAACTG+TGG 0.630321 8_1:-58507470 Msa1203690:CDS
TGCAGATGTTTGGTCTTGTG+GGG 0.631552 8_1:-58506491 Msa1203690:CDS
TTACTGAGACAAGAGTATGA+TGG 0.640987 8_1:-58507418 Msa1203690:CDS
TCACAACCGAAGTCAACTGT+GGG 0.649851 8_1:-58507469 Msa1203690:CDS
GAGCTTGATATAGATAGCAG+TGG 0.653731 8_1:-58505801 Msa1203690:CDS
GCTTGATATAGATAGCAGTG+GGG 0.812169 8_1:-58505799 Msa1203690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATGAATGCTTATATTT+TGG - chr8_1:58506466-58506485 Msa1203690:CDS 15.0%
!!! AAAATGAATGCTTATATTTT+GGG - chr8_1:58506467-58506486 Msa1203690:CDS 15.0%
!!! TAAAATGAATGCTTATATTT+TGG - chr8_1:58506466-58506485 Msa1203690:CDS 15.0%
!!! AAAATGAATGCTTATATTTT+GGG - chr8_1:58506467-58506486 Msa1203690:CDS 15.0%
!! ATAAGAATGAAAAATGCAAT+AGG + chr8_1:58506255-58506274 None:intergenic 20.0%
!! TTACTACACATATTTACAAA+GGG + chr8_1:58506329-58506348 None:intergenic 20.0%
!! TTTACTACACATATTTACAA+AGG + chr8_1:58506330-58506349 None:intergenic 20.0%
!! ATAAGAATGAAAAATGCAAT+AGG + chr8_1:58506255-58506274 None:intergenic 20.0%
!! TTACTACACATATTTACAAA+GGG + chr8_1:58506329-58506348 None:intergenic 20.0%
!! TTTACTACACATATTTACAA+AGG + chr8_1:58506330-58506349 None:intergenic 20.0%
! GCAATAGGTGTTTATAATAA+GGG + chr8_1:58506240-58506259 None:intergenic 25.0%
! TGCAATAGGTGTTTATAATA+AGG + chr8_1:58506241-58506260 None:intergenic 25.0%
! TCATTCTTATTAAGACAAGT+TGG - chr8_1:58506265-58506284 Msa1203690:CDS 25.0%
!!! ATATTTACAAAGGGCATTTT+AGG + chr8_1:58506320-58506339 None:intergenic 25.0%
! GTATCTAGTAATTTGAAAAG+AGG - chr8_1:58506418-58506437 Msa1203690:CDS 25.0%
! TTGAAAAGAGGCTTATATTT+AGG - chr8_1:58506430-58506449 Msa1203690:CDS 25.0%
! TGAAAAGAGGCTTATATTTA+GGG - chr8_1:58506431-58506450 Msa1203690:CDS 25.0%
!!! TTTTCAAGCACAAAATGATT+AGG + chr8_1:58506535-58506554 None:intergenic 25.0%
! TCTATATATTGCAGTCAATA+GGG + chr8_1:58507160-58507179 None:intergenic 25.0%
! ATCTATATATTGCAGTCAAT+AGG + chr8_1:58507161-58507180 None:intergenic 25.0%
! GCAATAGGTGTTTATAATAA+GGG + chr8_1:58506240-58506259 None:intergenic 25.0%
! TGCAATAGGTGTTTATAATA+AGG + chr8_1:58506241-58506260 None:intergenic 25.0%
! TCATTCTTATTAAGACAAGT+TGG - chr8_1:58506265-58506284 Msa1203690:CDS 25.0%
!!! ATATTTACAAAGGGCATTTT+AGG + chr8_1:58506320-58506339 None:intergenic 25.0%
! GTATCTAGTAATTTGAAAAG+AGG - chr8_1:58506418-58506437 Msa1203690:CDS 25.0%
! TTGAAAAGAGGCTTATATTT+AGG - chr8_1:58506430-58506449 Msa1203690:CDS 25.0%
! TGAAAAGAGGCTTATATTTA+GGG - chr8_1:58506431-58506450 Msa1203690:CDS 25.0%
!!! TTTTCAAGCACAAAATGATT+AGG + chr8_1:58506535-58506554 None:intergenic 25.0%
! TCTATATATTGCAGTCAATA+GGG + chr8_1:58507160-58507179 None:intergenic 25.0%
! ATCTATATATTGCAGTCAAT+AGG + chr8_1:58507161-58507180 None:intergenic 25.0%
! AAAGGTAGTGTTTAACTTCA+TGG - chr8_1:58505895-58505914 Msa1203690:CDS 30.0%
CCAAAATGATCATTGGATTA+GGG + chr8_1:58506070-58506089 None:intergenic 30.0%
ACCAAAATGATCATTGGATT+AGG + chr8_1:58506071-58506090 None:intergenic 30.0%
! TTTTCATCTCCATGTAATTC+AGG - chr8_1:58506125-58506144 Msa1203690:intron 30.0%
TAGGTGTTTATAATAAGGGA+CGG + chr8_1:58506236-58506255 None:intergenic 30.0%
ATTAATACCACTAAGTGCTT+TGG + chr8_1:58506367-58506386 None:intergenic 30.0%
AGCACTTAGTGGTATTAATT+AGG - chr8_1:58506368-58506387 Msa1203690:intron 30.0%
GCACTTAGTGGTATTAATTA+GGG - chr8_1:58506369-58506388 Msa1203690:intron 30.0%
CACTTAGTGGTATTAATTAG+GGG - chr8_1:58506370-58506389 Msa1203690:intron 30.0%
GAAAAGAGGCTTATATTTAG+GGG - chr8_1:58506432-58506451 Msa1203690:CDS 30.0%
!! TGAATGCTTATATTTTGGGA+TGG - chr8_1:58506471-58506490 Msa1203690:CDS 30.0%
!! ATGGAGGGAGTATTAATTAA+GGG - chr8_1:58506490-58506509 Msa1203690:CDS 30.0%
! GGAGTATTAATTAAGGGAAT+GGG - chr8_1:58506496-58506515 Msa1203690:CDS 30.0%
ATAGCTTGAAAAGCTACTAA+AGG - chr8_1:58506641-58506660 Msa1203690:intron 30.0%
AATATCAGATTGCAGATGTT+TGG - chr8_1:58506789-58506808 Msa1203690:intron 30.0%
AAACAAAGATCCTTGAGATA+AGG + chr8_1:58507053-58507072 None:intergenic 30.0%
CATTTATGTTTCCAGATTTC+GGG + chr8_1:58507258-58507277 None:intergenic 30.0%
CCATTTATGTTTCCAGATTT+CGG + chr8_1:58507259-58507278 None:intergenic 30.0%
TATGGCAGATAACATTGATA+TGG - chr8_1:58507434-58507453 Msa1203690:CDS 30.0%
! AAAGGTAGTGTTTAACTTCA+TGG - chr8_1:58505895-58505914 Msa1203690:CDS 30.0%
CCAAAATGATCATTGGATTA+GGG + chr8_1:58506070-58506089 None:intergenic 30.0%
ACCAAAATGATCATTGGATT+AGG + chr8_1:58506071-58506090 None:intergenic 30.0%
! TTTTCATCTCCATGTAATTC+AGG - chr8_1:58506125-58506144 Msa1203690:intron 30.0%
TAGGTGTTTATAATAAGGGA+CGG + chr8_1:58506236-58506255 None:intergenic 30.0%
ATTAATACCACTAAGTGCTT+TGG + chr8_1:58506367-58506386 None:intergenic 30.0%
AGCACTTAGTGGTATTAATT+AGG - chr8_1:58506368-58506387 Msa1203690:intron 30.0%
GCACTTAGTGGTATTAATTA+GGG - chr8_1:58506369-58506388 Msa1203690:intron 30.0%
CACTTAGTGGTATTAATTAG+GGG - chr8_1:58506370-58506389 Msa1203690:intron 30.0%
GAAAAGAGGCTTATATTTAG+GGG - chr8_1:58506432-58506451 Msa1203690:CDS 30.0%
!! TGAATGCTTATATTTTGGGA+TGG - chr8_1:58506471-58506490 Msa1203690:CDS 30.0%
!! ATGGAGGGAGTATTAATTAA+GGG - chr8_1:58506490-58506509 Msa1203690:CDS 30.0%
! GGAGTATTAATTAAGGGAAT+GGG - chr8_1:58506496-58506515 Msa1203690:CDS 30.0%
ATAGCTTGAAAAGCTACTAA+AGG - chr8_1:58506641-58506660 Msa1203690:intron 30.0%
AATATCAGATTGCAGATGTT+TGG - chr8_1:58506789-58506808 Msa1203690:intron 30.0%
AAACAAAGATCCTTGAGATA+AGG + chr8_1:58507053-58507072 None:intergenic 30.0%
CATTTATGTTTCCAGATTTC+GGG + chr8_1:58507258-58507277 None:intergenic 30.0%
CCATTTATGTTTCCAGATTT+CGG + chr8_1:58507259-58507278 None:intergenic 30.0%
TATGGCAGATAACATTGATA+TGG - chr8_1:58507434-58507453 Msa1203690:CDS 30.0%
TCTTGTCTCAGTAATACTTC+TGG + chr8_1:58505866-58505885 None:intergenic 35.0%
! TTACTGAGACAAGAGTATGA+TGG - chr8_1:58505872-58505891 Msa1203690:CDS 35.0%
GTCTGGCTATCAAAATATCA+TGG + chr8_1:58506039-58506058 None:intergenic 35.0%
! CCCTAATCCAATGATCATTT+TGG - chr8_1:58506067-58506086 Msa1203690:intron 35.0%
! TCCATGTAATTCAGGTCTTT+TGG - chr8_1:58506133-58506152 Msa1203690:intron 35.0%
TGTTTATAATAAGGGACGGA+GGG + chr8_1:58506232-58506251 None:intergenic 35.0%
!!! ATGCTTATATTTTGGGATGG+AGG - chr8_1:58506474-58506493 Msa1203690:CDS 35.0%
!!! TGCTTATATTTTGGGATGGA+GGG - chr8_1:58506475-58506494 Msa1203690:CDS 35.0%
!! GATGGAGGGAGTATTAATTA+AGG - chr8_1:58506489-58506508 Msa1203690:CDS 35.0%
!! GGGAGTATTAATTAAGGGAA+TGG - chr8_1:58506495-58506514 Msa1203690:CDS 35.0%
GTATTAATTAAGGGAATGGG+AGG - chr8_1:58506499-58506518 Msa1203690:intron 35.0%
TGCTTGAAAACTATGAAGCA+TGG - chr8_1:58506545-58506564 Msa1203690:intron 35.0%
GCTACTAAAGGTTCTTATTC+TGG - chr8_1:58506653-58506672 Msa1203690:intron 35.0%
ATTCTGGTAGTAGTATCTTC+TGG - chr8_1:58506669-58506688 Msa1203690:intron 35.0%
TTCTGGTAGTAGTATCTTCT+GGG - chr8_1:58506670-58506689 Msa1203690:intron 35.0%
AACCTTATATGTGATGCTAG+TGG - chr8_1:58506823-58506842 Msa1203690:intron 35.0%
ACCTTATATGTGATGCTAGT+GGG - chr8_1:58506824-58506843 Msa1203690:intron 35.0%
! ATTGTCTTCCGGAAATCTTT+TGG + chr8_1:58506878-58506897 None:intergenic 35.0%
TATCTGAACATTGTCTGGAA+TGG + chr8_1:58507013-58507032 None:intergenic 35.0%
GAAATAGAATTACCTCTGCA+GGG + chr8_1:58507080-58507099 None:intergenic 35.0%
TGAAATAGAATTACCTCTGC+AGG + chr8_1:58507081-58507100 None:intergenic 35.0%
TCTATGTCATCTTATGCCTT+TGG - chr8_1:58507205-58507224 Msa1203690:intron 35.0%
GTAATTCTCTGTCATGTACA+CGG + chr8_1:58507231-58507250 None:intergenic 35.0%
CCGAAATCTGGAAACATAAA+TGG - chr8_1:58507256-58507275 Msa1203690:intron 35.0%
! CTGATGGATGAGAAGATAAT+GGG - chr8_1:58507303-58507322 Msa1203690:intron 35.0%
! CATAAACTGGTCTAAAGAAC+AGG + chr8_1:58507418-58507437 None:intergenic 35.0%
CTGTTCTTTAGACCAGTTTA+TGG - chr8_1:58507416-58507435 Msa1203690:CDS 35.0%
CAATGTTATCTGCCATAAAC+TGG + chr8_1:58507431-58507450 None:intergenic 35.0%
ACTGCTATCTATATCAAGCT+CGG + chr8_1:58507490-58507509 None:intergenic 35.0%
AGCTTGATATAGATAGCAGT+GGG - chr8_1:58507490-58507509 Msa1203690:CDS 35.0%
TCTTGTCTCAGTAATACTTC+TGG + chr8_1:58505866-58505885 None:intergenic 35.0%
! TTACTGAGACAAGAGTATGA+TGG - chr8_1:58505872-58505891 Msa1203690:CDS 35.0%
GTCTGGCTATCAAAATATCA+TGG + chr8_1:58506039-58506058 None:intergenic 35.0%
! CCCTAATCCAATGATCATTT+TGG - chr8_1:58506067-58506086 Msa1203690:intron 35.0%
! TCCATGTAATTCAGGTCTTT+TGG - chr8_1:58506133-58506152 Msa1203690:intron 35.0%
TGTTTATAATAAGGGACGGA+GGG + chr8_1:58506232-58506251 None:intergenic 35.0%
!!! ATGCTTATATTTTGGGATGG+AGG - chr8_1:58506474-58506493 Msa1203690:CDS 35.0%
!!! TGCTTATATTTTGGGATGGA+GGG - chr8_1:58506475-58506494 Msa1203690:CDS 35.0%
!! GATGGAGGGAGTATTAATTA+AGG - chr8_1:58506489-58506508 Msa1203690:CDS 35.0%
!! GGGAGTATTAATTAAGGGAA+TGG - chr8_1:58506495-58506514 Msa1203690:CDS 35.0%
GTATTAATTAAGGGAATGGG+AGG - chr8_1:58506499-58506518 Msa1203690:intron 35.0%
TGCTTGAAAACTATGAAGCA+TGG - chr8_1:58506545-58506564 Msa1203690:intron 35.0%
GCTACTAAAGGTTCTTATTC+TGG - chr8_1:58506653-58506672 Msa1203690:intron 35.0%
ATTCTGGTAGTAGTATCTTC+TGG - chr8_1:58506669-58506688 Msa1203690:intron 35.0%
TTCTGGTAGTAGTATCTTCT+GGG - chr8_1:58506670-58506689 Msa1203690:intron 35.0%
AACCTTATATGTGATGCTAG+TGG - chr8_1:58506823-58506842 Msa1203690:intron 35.0%
ACCTTATATGTGATGCTAGT+GGG - chr8_1:58506824-58506843 Msa1203690:intron 35.0%
! ATTGTCTTCCGGAAATCTTT+TGG + chr8_1:58506878-58506897 None:intergenic 35.0%
TATCTGAACATTGTCTGGAA+TGG + chr8_1:58507013-58507032 None:intergenic 35.0%
GAAATAGAATTACCTCTGCA+GGG + chr8_1:58507080-58507099 None:intergenic 35.0%
TGAAATAGAATTACCTCTGC+AGG + chr8_1:58507081-58507100 None:intergenic 35.0%
TCTATGTCATCTTATGCCTT+TGG - chr8_1:58507205-58507224 Msa1203690:intron 35.0%
GTAATTCTCTGTCATGTACA+CGG + chr8_1:58507231-58507250 None:intergenic 35.0%
CCGAAATCTGGAAACATAAA+TGG - chr8_1:58507256-58507275 Msa1203690:intron 35.0%
! CTGATGGATGAGAAGATAAT+GGG - chr8_1:58507303-58507322 Msa1203690:intron 35.0%
! CATAAACTGGTCTAAAGAAC+AGG + chr8_1:58507418-58507437 None:intergenic 35.0%
CTGTTCTTTAGACCAGTTTA+TGG - chr8_1:58507416-58507435 Msa1203690:CDS 35.0%
CAATGTTATCTGCCATAAAC+TGG + chr8_1:58507431-58507450 None:intergenic 35.0%
ACTGCTATCTATATCAAGCT+CGG + chr8_1:58507490-58507509 None:intergenic 35.0%
AGCTTGATATAGATAGCAGT+GGG - chr8_1:58507490-58507509 Msa1203690:CDS 35.0%
!! ACTTCTGGAGCAATATATGC+CGG + chr8_1:58505851-58505870 None:intergenic 40.0%
! GAGACAAGAGTATGATGGAA+AGG - chr8_1:58505877-58505896 Msa1203690:CDS 40.0%
CTGCAGACCAAAATGATCAT+TGG + chr8_1:58506077-58506096 None:intergenic 40.0%
GCCAAAAGACCTGAATTACA+TGG + chr8_1:58506137-58506156 None:intergenic 40.0%
GTGTTTATAATAAGGGACGG+AGG + chr8_1:58506233-58506252 None:intergenic 40.0%
!! TTTTCCACCAAAGCACTTAG+TGG - chr8_1:58506357-58506376 Msa1203690:intron 40.0%
AATACCACTAAGTGCTTTGG+TGG + chr8_1:58506364-58506383 None:intergenic 40.0%
!! GCTTTTCAAGCTATGAAGCA+CGG + chr8_1:58506635-58506654 None:intergenic 40.0%
!! ATTGCAGATGTTTGGTCTTG+TGG - chr8_1:58506797-58506816 Msa1203690:intron 40.0%
!! TTGCAGATGTTTGGTCTTGT+GGG - chr8_1:58506798-58506817 Msa1203690:intron 40.0%
TCCCACTAGCATCACATATA+AGG + chr8_1:58506828-58506847 None:intergenic 40.0%
CTAACGAGCCAAAAGATTTC+CGG - chr8_1:58506867-58506886 Msa1203690:intron 40.0%
AGATTTCCGGAAGACAATAC+AGG - chr8_1:58506880-58506899 Msa1203690:intron 40.0%
! TCTGATTGATAGAGCACTTG+TGG - chr8_1:58506951-58506970 Msa1203690:intron 40.0%
! CATTGTCTGGAATGGAATAC+TGG + chr8_1:58507005-58507024 None:intergenic 40.0%
GGAGTTATCTGAACATTGTC+TGG + chr8_1:58507018-58507037 None:intergenic 40.0%
CAAAGATCCTTGAGATAAGG+TGG + chr8_1:58507050-58507069 None:intergenic 40.0%
TATTGCAGTCAATAGGGCAT+AGG + chr8_1:58507154-58507173 None:intergenic 40.0%
! GTTTCTGAAGAATCTTCCCA+TGG - chr8_1:58507278-58507297 Msa1203690:intron 40.0%
CCATTATCTTCTCATCCATC+AGG + chr8_1:58507305-58507324 None:intergenic 40.0%
! CCTGATGGATGAGAAGATAA+TGG - chr8_1:58507302-58507321 Msa1203690:intron 40.0%
GTTGTTCAGGCTCTTCAAAT+TGG + chr8_1:58507332-58507351 None:intergenic 40.0%
ATTGCATCAATGCTCTGCAT+GGG + chr8_1:58507354-58507373 None:intergenic 40.0%
! GGACGATGAATTTGATGACT+TGG - chr8_1:58507455-58507474 Msa1203690:CDS 40.0%
GAGCTTGATATAGATAGCAG+TGG - chr8_1:58507489-58507508 Msa1203690:CDS 40.0%
GCTTGATATAGATAGCAGTG+GGG - chr8_1:58507491-58507510 Msa1203690:CDS 40.0%
!! ACTTCTGGAGCAATATATGC+CGG + chr8_1:58505851-58505870 None:intergenic 40.0%
! GAGACAAGAGTATGATGGAA+AGG - chr8_1:58505877-58505896 Msa1203690:CDS 40.0%
CTGCAGACCAAAATGATCAT+TGG + chr8_1:58506077-58506096 None:intergenic 40.0%
GCCAAAAGACCTGAATTACA+TGG + chr8_1:58506137-58506156 None:intergenic 40.0%
GTGTTTATAATAAGGGACGG+AGG + chr8_1:58506233-58506252 None:intergenic 40.0%
!! TTTTCCACCAAAGCACTTAG+TGG - chr8_1:58506357-58506376 Msa1203690:intron 40.0%
AATACCACTAAGTGCTTTGG+TGG + chr8_1:58506364-58506383 None:intergenic 40.0%
!! GCTTTTCAAGCTATGAAGCA+CGG + chr8_1:58506635-58506654 None:intergenic 40.0%
!! ATTGCAGATGTTTGGTCTTG+TGG - chr8_1:58506797-58506816 Msa1203690:intron 40.0%
!! TTGCAGATGTTTGGTCTTGT+GGG - chr8_1:58506798-58506817 Msa1203690:intron 40.0%
TCCCACTAGCATCACATATA+AGG + chr8_1:58506828-58506847 None:intergenic 40.0%
CTAACGAGCCAAAAGATTTC+CGG - chr8_1:58506867-58506886 Msa1203690:intron 40.0%
AGATTTCCGGAAGACAATAC+AGG - chr8_1:58506880-58506899 Msa1203690:intron 40.0%
! TCTGATTGATAGAGCACTTG+TGG - chr8_1:58506951-58506970 Msa1203690:intron 40.0%
! CATTGTCTGGAATGGAATAC+TGG + chr8_1:58507005-58507024 None:intergenic 40.0%
GGAGTTATCTGAACATTGTC+TGG + chr8_1:58507018-58507037 None:intergenic 40.0%
CAAAGATCCTTGAGATAAGG+TGG + chr8_1:58507050-58507069 None:intergenic 40.0%
TATTGCAGTCAATAGGGCAT+AGG + chr8_1:58507154-58507173 None:intergenic 40.0%
! GTTTCTGAAGAATCTTCCCA+TGG - chr8_1:58507278-58507297 Msa1203690:intron 40.0%
CCATTATCTTCTCATCCATC+AGG + chr8_1:58507305-58507324 None:intergenic 40.0%
! CCTGATGGATGAGAAGATAA+TGG - chr8_1:58507302-58507321 Msa1203690:intron 40.0%
GTTGTTCAGGCTCTTCAAAT+TGG + chr8_1:58507332-58507351 None:intergenic 40.0%
ATTGCATCAATGCTCTGCAT+GGG + chr8_1:58507354-58507373 None:intergenic 40.0%
! GGACGATGAATTTGATGACT+TGG - chr8_1:58507455-58507474 Msa1203690:CDS 40.0%
GAGCTTGATATAGATAGCAG+TGG - chr8_1:58507489-58507508 Msa1203690:CDS 40.0%
GCTTGATATAGATAGCAGTG+GGG - chr8_1:58507491-58507510 Msa1203690:CDS 40.0%
TTCACAACCGAAGTCAACTG+TGG - chr8_1:58505820-58505839 Msa1203690:CDS 45.0%
TCACAACCGAAGTCAACTGT+GGG - chr8_1:58505821-58505840 Msa1203690:CDS 45.0%
GGATTAGGGTGAAAACAGTC+TGG + chr8_1:58506056-58506075 None:intergenic 45.0%
!! TGCAGATGTTTGGTCTTGTG+GGG - chr8_1:58506799-58506818 Msa1203690:intron 45.0%
GGCTCGTTAGGATCTTCAAA+GGG + chr8_1:58506857-58506876 None:intergenic 45.0%
TGGCTCGTTAGGATCTTCAA+AGG + chr8_1:58506858-58506877 None:intergenic 45.0%
!!! CGGAAATCTTTTGGCTCGTT+AGG + chr8_1:58506869-58506888 None:intergenic 45.0%
GACGTACCTGTATTGTCTTC+CGG + chr8_1:58506889-58506908 None:intergenic 45.0%
GACACTTAGTACTCTCTGCA+AGG + chr8_1:58506983-58507002 None:intergenic 45.0%
!!! CTTTGTTTTTGACCCTGCAG+AGG - chr8_1:58507065-58507084 Msa1203690:intron 45.0%
GAATTACCATGCCCGAAATC+TGG - chr8_1:58507244-58507263 Msa1203690:intron 45.0%
ATGTTTCCAGATTTCGGGCA+TGG + chr8_1:58507253-58507272 None:intergenic 45.0%
TTCTCATCCATCAGGTCCAT+GGG + chr8_1:58507297-58507316 None:intergenic 45.0%
GATTGCATCAATGCTCTGCA+TGG + chr8_1:58507355-58507374 None:intergenic 45.0%
TTCACAACCGAAGTCAACTG+TGG - chr8_1:58505820-58505839 Msa1203690:CDS 45.0%
TCACAACCGAAGTCAACTGT+GGG - chr8_1:58505821-58505840 Msa1203690:CDS 45.0%
GGATTAGGGTGAAAACAGTC+TGG + chr8_1:58506056-58506075 None:intergenic 45.0%
!! TGCAGATGTTTGGTCTTGTG+GGG - chr8_1:58506799-58506818 Msa1203690:intron 45.0%
GGCTCGTTAGGATCTTCAAA+GGG + chr8_1:58506857-58506876 None:intergenic 45.0%
TGGCTCGTTAGGATCTTCAA+AGG + chr8_1:58506858-58506877 None:intergenic 45.0%
!!! CGGAAATCTTTTGGCTCGTT+AGG + chr8_1:58506869-58506888 None:intergenic 45.0%
GACGTACCTGTATTGTCTTC+CGG + chr8_1:58506889-58506908 None:intergenic 45.0%
GACACTTAGTACTCTCTGCA+AGG + chr8_1:58506983-58507002 None:intergenic 45.0%
!!! CTTTGTTTTTGACCCTGCAG+AGG - chr8_1:58507065-58507084 Msa1203690:intron 45.0%
GAATTACCATGCCCGAAATC+TGG - chr8_1:58507244-58507263 Msa1203690:intron 45.0%
ATGTTTCCAGATTTCGGGCA+TGG + chr8_1:58507253-58507272 None:intergenic 45.0%
TTCTCATCCATCAGGTCCAT+GGG + chr8_1:58507297-58507316 None:intergenic 45.0%
GATTGCATCAATGCTCTGCA+TGG + chr8_1:58507355-58507374 None:intergenic 45.0%
!!! ATATTTTTTTTTTTAATGTA+AGG - chr8_1:58506727-58506746 Msa1203690:intron 5.0%
!!! ATATTTTTTTTTTTAATGTA+AGG - chr8_1:58506727-58506746 Msa1203690:intron 5.0%
! GGAGTTCCCACAGTTGACTT+CGG + chr8_1:58505830-58505849 None:intergenic 50.0%
GAAGTCAACTGTGGGAACTC+CGG - chr8_1:58505829-58505848 Msa1203690:CDS 50.0%
AAGCACGGACACTCCTTGAT+GGG + chr8_1:58506620-58506639 None:intergenic 50.0%
AGTGTCGCCACCTTATCTCA+AGG - chr8_1:58507040-58507059 Msa1203690:intron 50.0%
TCTGTCATGTACACGGCCAA+AGG + chr8_1:58507224-58507243 None:intergenic 50.0%
GAATCTTCCCATGGACCTGA+TGG - chr8_1:58507287-58507306 Msa1203690:intron 50.0%
CTTCTCATCCATCAGGTCCA+TGG + chr8_1:58507298-58507317 None:intergenic 50.0%
! ATGCTCTGCATGGGTTGTTC+AGG + chr8_1:58507345-58507364 None:intergenic 50.0%
GAAGCTACTATACCAGCAGC+TGG - chr8_1:58507390-58507409 Msa1203690:intron 50.0%
AAAGAACAGGTTCCAGCTGC+TGG + chr8_1:58507405-58507424 None:intergenic 50.0%
! GGAGTTCCCACAGTTGACTT+CGG + chr8_1:58505830-58505849 None:intergenic 50.0%
GAAGTCAACTGTGGGAACTC+CGG - chr8_1:58505829-58505848 Msa1203690:CDS 50.0%
AAGCACGGACACTCCTTGAT+GGG + chr8_1:58506620-58506639 None:intergenic 50.0%
AGTGTCGCCACCTTATCTCA+AGG - chr8_1:58507040-58507059 Msa1203690:intron 50.0%
TCTGTCATGTACACGGCCAA+AGG + chr8_1:58507224-58507243 None:intergenic 50.0%
GAATCTTCCCATGGACCTGA+TGG - chr8_1:58507287-58507306 Msa1203690:intron 50.0%
CTTCTCATCCATCAGGTCCA+TGG + chr8_1:58507298-58507317 None:intergenic 50.0%
! ATGCTCTGCATGGGTTGTTC+AGG + chr8_1:58507345-58507364 None:intergenic 50.0%
GAAGCTACTATACCAGCAGC+TGG - chr8_1:58507390-58507409 Msa1203690:intron 50.0%
AAAGAACAGGTTCCAGCTGC+TGG + chr8_1:58507405-58507424 None:intergenic 50.0%
ACGACACCAACTCAGACACC+TGG - chr8_1:58506589-58506608 Msa1203690:intron 55.0%
GTGTGTCCAGGTGTCTGAGT+TGG + chr8_1:58506598-58506617 None:intergenic 55.0%
ACACCTGGACACACCCATCA+AGG - chr8_1:58506604-58506623 Msa1203690:intron 55.0%
! ACTCCTTGATGGGTGTGTCC+AGG + chr8_1:58506610-58506629 None:intergenic 55.0%
GAAGCACGGACACTCCTTGA+TGG + chr8_1:58506621-58506640 None:intergenic 55.0%
GAGATAAGGTGGCGACACTC+TGG + chr8_1:58507039-58507058 None:intergenic 55.0%
ACGACACCAACTCAGACACC+TGG - chr8_1:58506589-58506608 Msa1203690:intron 55.0%
GTGTGTCCAGGTGTCTGAGT+TGG + chr8_1:58506598-58506617 None:intergenic 55.0%
ACACCTGGACACACCCATCA+AGG - chr8_1:58506604-58506623 Msa1203690:intron 55.0%
! ACTCCTTGATGGGTGTGTCC+AGG + chr8_1:58506610-58506629 None:intergenic 55.0%
GAAGCACGGACACTCCTTGA+TGG + chr8_1:58506621-58506640 None:intergenic 55.0%
GAGATAAGGTGGCGACACTC+TGG + chr8_1:58507039-58507058 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 58505776 58507536 58505776 ID=Msa1203690;Name=Msa1203690
chr8_1 mRNA 58505776 58507536 58505776 ID=Msa1203690-mRNA-1;Parent=Msa1203690;Name=Msa1203690-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|4|0|206
chr8_1 exon 58507414 58507536 58507414 ID=Msa1203690-mRNA-1:exon:19014;Parent=Msa1203690-mRNA-1
chr8_1 exon 58506411 58506515 58506411 ID=Msa1203690-mRNA-1:exon:19013;Parent=Msa1203690-mRNA-1
chr8_1 exon 58506226 58506324 58506226 ID=Msa1203690-mRNA-1:exon:19012;Parent=Msa1203690-mRNA-1
chr8_1 exon 58505776 58506069 58505776 ID=Msa1203690-mRNA-1:exon:19011;Parent=Msa1203690-mRNA-1
chr8_1 CDS 58507414 58507536 58507414 ID=Msa1203690-mRNA-1:cds;Parent=Msa1203690-mRNA-1
chr8_1 CDS 58506411 58506515 58506411 ID=Msa1203690-mRNA-1:cds;Parent=Msa1203690-mRNA-1
chr8_1 CDS 58506226 58506324 58506226 ID=Msa1203690-mRNA-1:cds;Parent=Msa1203690-mRNA-1
chr8_1 CDS 58505776 58506069 58505776 ID=Msa1203690-mRNA-1:cds;Parent=Msa1203690-mRNA-1
Gene Sequence

>Msa1203690

TTGCAATCTGATTGCTGGTGTTATTTTCAGTCTTCAGTGCTTCATTCACAACCGAAGTCAACTGTGGGAACTCCGGCATATATTGCTCCAGAAGTATTACTGAGACAAGAGTATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGGGTAACCTTATATGTGATGCTAGTGGGATCGTATCCCTTTGAAGATCCTAACGAGCCAAAAGATTTCCGGAAGACAATACAGAGAGTACTAAGTGTCCAGTATTCCATTCCAGACAATGTTCAGATAACTCCAGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATTACCATGCCCGAAATCTGGAAACATAAATGGTTTCTGAAGAATCTTCCCATGGACCTGATGGATGAGAAGATAATGGGTAACCAATTTGAAGAGCCTGAACAACCCATGCAGAGCATTGATGCAATCATGCAGATAATTTCAGAAGCTACTATACCAGCAGCTGGAACCTGTTCTTTAGACCAGTTTATGGCAGATAACATTGATATGGACGATGAATTTGATGACTTGGAATATGAATCCGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCTATGTACTAA
Protein sequence

>Msa1203690

LQSDCWCYFQSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGSYPFEDPNEPKDFRKTIQRVLSVQYSIPDNVQITPECRHLISRIFVFDPAERITMPEIWKHKWFLKNLPMDLMDEKIMGNQFEEPEQPMQSIDAIMQIISEATIPAAGTCSLDQFMADNIDMDDEFDDLEYESELDIDSSGEIVYAMY*