AlfalfaGEDB | Msa1204050

M. sativa cultivar zhongmu-4 / Msa1204050

KEGG: -
GO: GO:0005575 GO:0016020
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204050	XP_024637130.1	92.327	795	33	1	1	767	21	815	0.0	1481

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204050	sp\|P17801\|KPRO_MAIZE	38.235	816	430	20	8	765	17	816	2.59e-178	534

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1204050	Msa1256230	0.811352	7.309118e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1204050	MtrunA17_Chr4g0053161	92.327	795	33	1	1	767	21	815	1481
Msa1204050	MtrunA17_Chr7g0237351	79.975	794	130	2	1	765	1	794	1307
Msa1204050	MtrunA17_Chr7g0237391	80.454	793	127	1	1	765	1	793	1229
Msa1204050	MtrunA17_Chr7g0234561	81.508	703	102	1	93	767	34	736	1178
Msa1204050	MtrunA17_Chr7g0237341	66.751	791	227	9	1	762	4	787	1047
Msa1204050	MtrunA17_Chr7g0237331	64.223	791	248	7	1	762	4	788	997
Msa1204050	MtrunA17_Chr3g0106121	55.322	808	307	10	1	765	1	797	867
Msa1204050	MtrunA17_Chr3g0106201	56.747	793	293	13	7	761	7	787	862
Msa1204050	MtrunA17_Chr3g0106211	55.031	805	304	13	7	765	10	802	856
Msa1204050	MtrunA17_Chr3g0106131	54.579	808	309	12	1	765	1	793	855

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204050	AT2G19130.1	32.707	798	457	24	6	762	9	767	2.21e-119	379
Msa1204050	AT5G24080.2	31.748	841	445	30	7	762	6	802	2.58e-106	345
Msa1204050	AT4G00340.1	32.850	758	444	26	41	762	32	760	1.69e-102	334
Msa1204050	AT4G00340.2	32.527	744	444	24	41	762	32	739	1.56e-100	328
Msa1204050	AT5G35370.1	30.605	794	459	31	34	764	42	806	1.37e-92	309
Msa1204050	AT5G24080.3	31.364	711	374	23	130	762	1	675	1.63e-90	300
Msa1204050	AT5G24080.1	31.364	711	374	23	130	762	1	675	1.63e-90	300
Msa1204050	AT4G32300.1	28.794	771	436	21	53	762	47	765	6.60e-90	300
Msa1204050	AT4G21380.1	29.743	817	461	28	20	763	26	802	1.05e-87	295
Msa1204050	AT4G21390.1	28.865	828	484	27	7	764	10	802	5.57e-85	288

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Find 144 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTATGATATTGCTTT+AGG	0.296746	8_1:+59518332	Msa1204050:CDS
AAAAGTGTTCTTGTTTGCCA+GGG	0.592888	8_1:+59517440	Msa1204050:CDS
AAAGAAGAGTTCATGTTGGG+TGG	0.556689	8_1:+59518724	Msa1204050:CDS
AAAGCTTTCCCTCTTAAACA+CGG	0.644710	8_1:+59516799	Msa1204050:CDS
AAAGTGGATGTTTATAGTTA+TGG	0.366934	8_1:+59518590	Msa1204050:CDS
AACCATAAGACCAATCATTA+TGG	0.354011	8_1:-59517477	None:intergenic
AACCATAATGATTGGTCTTA+TGG	0.254741	8_1:+59517475	Msa1204050:CDS
AACCGTACCGTAATCATATG+TGG	0.533358	8_1:-59517251	None:intergenic
AACCGTGACAACCCTGTAAA+TGG	0.302880	8_1:+59516247	Msa1204050:CDS
AACTTCACCATATGGTTTGT+TGG	0.432341	8_1:-59517856	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAGATGAACATTGGAA+GGG	-	chr8_1:59516043-59516062	None:intergenic	30.0%
TAATGAAGATGAACATTGGA+AGG	-	chr8_1:59516044-59516063	None:intergenic	30.0%
GATGTAATTGTCTCTTCAAA+TGG	+	chr8_1:59516112-59516131	Msa1204050:CDS	30.0%
TATAGTGATAAAGATGGTGT+TGG	+	chr8_1:59516317-59516336	Msa1204050:intron	30.0%
ATAGTGATAAAGATGGTGTT+GGG	+	chr8_1:59516318-59516337	Msa1204050:intron	30.0%
TATACTTTGTTGGTACGTTT+GGG	-	chr8_1:59516595-59516614	None:intergenic	30.0%
TACCCAATATTGGATATGTT+GGG	-	chr8_1:59516619-59516638	None:intergenic	30.0%
AAAATCATGTGACTATGGTA+TGG	+	chr8_1:59516655-59516674	Msa1204050:intron	30.0%
AGATAATTAGGAAATCAGAG+GGG	-	chr8_1:59516754-59516773	None:intergenic	30.0%
GAGATAATTAGGAAATCAGA+GGG	-	chr8_1:59516755-59516774	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	59515995	59518904	59515995	ID=Msa1204050;Name=Msa1204050
chr8_1	mRNA	59515995	59518904	59515995	ID=Msa1204050-mRNA-1;Parent=Msa1204050;Name=Msa1204050-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|3\|0\|768
chr8_1	exon	59515995	59516268	59515995	ID=Msa1204050-mRNA-1:exon:19202;Parent=Msa1204050-mRNA-1
chr8_1	exon	59516789	59517870	59516789	ID=Msa1204050-mRNA-1:exon:19203;Parent=Msa1204050-mRNA-1
chr8_1	exon	59517954	59518904	59517954	ID=Msa1204050-mRNA-1:exon:19204;Parent=Msa1204050-mRNA-1
chr8_1	CDS	59515995	59516268	59515995	ID=Msa1204050-mRNA-1:cds;Parent=Msa1204050-mRNA-1
chr8_1	CDS	59516789	59517870	59516789	ID=Msa1204050-mRNA-1:cds;Parent=Msa1204050-mRNA-1
chr8_1	CDS	59517954	59518904	59517954	ID=Msa1204050-mRNA-1:cds;Parent=Msa1204050-mRNA-1

Gene Sequence

>Msa1204050

ATGGCTTTCACAATTTCATATTTTTTCCTAGCCTACTTGCTATTTCCCTTCCAATGTTCATCTTCATTATCATCATTGAACAAAGGCTCCTCTCTTTCAGTAGAGAAACATGCAGAAGATGTAATTGTCTCTTCAAATGGAACATTCTCAGCTGGCTTCTTTCAAGTTGGTGAAAATGCTTTTTCCTTTGGAATATGGTTCACTGAACTGCAGCCCCACACACACAACCCCGCCACTATTGTTTGGATAGCAAACCGTGACAACCCTGTAAATGGTAAGCTCTCAAAGCTTTCCCTCTTAAACACGGGTAATATCATTTTGCTTGATGCCGGTCAAAACAACATTTGGTCTTCAAACACACAATCAAACACTCCACTAGAGTTGTATCTAAAAGAAGATGGCAATCTTGTGTTACGTGAGCTTCAAGGTACTACGATCTTGTGGCAAAGCTATGATTTTCCAACAAATACTCTCCTTCCTAATCAACCTCTCACTAGATACACAAAACTTGTTTCTTCAAGAAGTCAGAGTAATCATTCTTCTGGCTTCTATAAGCTGTTTTTTGATGATAATAATATTATTCGTCTAGAATATGATGGTCCTGATGTTTCAAGCACATATTGGCCACCACCTTGGTTGCTAAGTTGGGAAGCTGGAAGGTTCAATTATAATAGTAGTAGAATTGCTTTGTTGGATTCTCATGGAAAGTTTATTTCATCTGATAATTACATTTTTTCCACATATGATTACGGTACGGTTATGCAAAGAAGATTAACCATGGATTCAGATGGTAATATTCGTGTTTACAGTCGAAAAAGTTTGTTAGAAAATTGGTATGTTTCATGGCAAGTCATATATGATACATGCACCATTCATGGAATTTGTGGTGAAAATAGCACTTGTAGCTATCATTCAAAAAAGGGTAAAAAGTGTTCTTGTTTGCCAGGGTATAAAGTGAAGAACCATAATGATTGGTCTTATGGTTGTGAGCCTATGTTTGATTTTACTTGCAATAGAAGTCATTCTACCTTTTTAAAATTACCAGGTTTTGAGCTTTATGGTTATGACATTAATTTTGTTGAAAATAGTACCTACAAAAATTGTGAGAGTTTATGTTTACAAGATTGTAACTGCAAAGGATTCCAATACACATTTGAAAGGGACCAAGGCATCTTCAAATGCTATACAAAGCTAAATTTGTTGAATGGGAGGCATTCACCAAGTTTTCGAGGAACAACTTACTTGAGACTTCCAAAAGGTAATAACTTCACTAAAGAAGAGTCTATAAGTGTAAAGGACCATGTTTGTTTGGTGCAACTTCATAAAGACTATGCCAGAAAACCAACAAACCATATGACCAAGAAAAAAGCTACTTCAGATCAAAATAGCTATCATCATACATTATTGGGATTCAGAAGATATAGTTACTCAGAGTTGAAGGTGGCAACCAAGAATTTCAGTAATGAGATTGGAAGAGGTGGAGGAGGGGTTGTATACATAGGTACACTACCAGATCAAAGACAAGCAGCAATAAAGAGATTGAATGAAGCTAAACAAGGAGAAGGAGAGTTTCTTGCTGAAGTAAGCATCATCGGAAGGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGTTGAAGGTAAGCATAGAATTTTGGTATATGAGTACATGAAGAATGACTCTTTAGCTGAAAATCTTTCATCTAAAACTAACATGCTTGATTGGAGTAAAAGGTATGATATTGCTTTAGGAACAGCTAGAGTCCTAGCTTATCTACATGAAGAATGTTTGGAGTGGATTTTGCATTGTGATATAAAACCTCAAAATATACTTCTTGATTCTAACTATCAACCTAAGTTAGCAGACTTTGGATTGTCTAAGCTGAGAAATAGAAACAATGTCAATAGCAATTCAAAATTCTCAATGATTAGAGGAACAAGAGGATATATGGCTCCTGAATGGGTTTTCAATTTACCAATAACATCTAAAGTGGATGTTTATAGTTATGGGATTGTTTTGTTGGAGATGATAACTGGAAAAAGTTCAACAATGATGAATATAGAAGGAGTTGATGGGAAAGTGGCATATAATGGAAGGTTGGTAACTTGGGTAAGAGAGAAAAAGAAGAGTTCATGTTGGGTGGAAGAAATTATGGATCCTTCAATAGTGAATAATTGTGATTTAATTAAGATGGAAATTTTGGCTAAAGTTGCTTTGGAGTGTGTGGAGGAAGATAGGGATATTAGGCCTAATATGAGCCAGGTGGTTGAGATGCTTGAAAGTAATGAAAGACTTTGTTGA

Protein sequence

>Msa1204050

MAFTISYFFLAYLLFPFQCSSSLSSLNKGSSLSVEKHAEDVIVSSNGTFSAGFFQVGENAFSFGIWFTELQPHTHNPATIVWIANRDNPVNGKLSKLSLLNTGNIILLDAGQNNIWSSNTQSNTPLELYLKEDGNLVLRELQGTTILWQSYDFPTNTLLPNQPLTRYTKLVSSRSQSNHSSGFYKLFFDDNNIIRLEYDGPDVSSTYWPPPWLLSWEAGRFNYNSSRIALLDSHGKFISSDNYIFSTYDYGTVMQRRLTMDSDGNIRVYSRKSLLENWYVSWQVIYDTCTIHGICGENSTCSYHSKKGKKCSCLPGYKVKNHNDWSYGCEPMFDFTCNRSHSTFLKLPGFELYGYDINFVENSTYKNCESLCLQDCNCKGFQYTFERDQGIFKCYTKLNLLNGRHSPSFRGTTYLRLPKGNNFTKEESISVKDHVCLVQLHKDYARKPTNHMTKKKATSDQNSYHHTLLGFRRYSYSELKVATKNFSNEIGRGGGGVVYIGTLPDQRQAAIKRLNEAKQGEGEFLAEVSIIGRLNHMNLIEMWGYCVEGKHRILVYEYMKNDSLAENLSSKTNMLDWSKRYDIALGTARVLAYLHEECLEWILHCDIKPQNILLDSNYQPKLADFGLSKLRNRNNVNSNSKFSMIRGTRGYMAPEWVFNLPITSKVDVYSYGIVLLEMITGKSSTMMNIEGVDGKVAYNGRLVTWVREKKKSSCWVEEIMDPSIVNNCDLIKMEILAKVALECVEEDRDIRPNMSQVVEMLESNERLC*