AlfalfaGEDB | Msa1204170

M. sativa cultivar zhongmu-4 / Msa1204170

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204170	XP_003609262.1	98.980	490	3	1	1	488	1	490	0.0	1002

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204170	sp\|Q64FQ2\|PID2_ARATH	59.515	536	158	15	1	488	1	525	0.0	599

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204170	G7JVA3	98.980	490	3	1	1	488	1	490	0.0	1002

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1204130	Msa1204170	0.974073	1.618690e-137	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204170	MtrunA17_Chr4g0063311	98.980	490	3	1	1	488	1	490	0.0	1002
Msa1204170	MtrunA17_Chr2g0290691	56.219	402	147	7	64	455	179	561	1.37e-156	458
Msa1204170	MtrunA17_Chr8g0335351	55.335	403	157	6	56	454	337	720	1.11e-150	448
Msa1204170	MtrunA17_Chr7g0250631	53.941	406	159	7	56	455	331	714	1.50e-150	447
Msa1204170	MtrunA17_Chr7g0227331	55.750	400	152	7	64	455	207	589	1.64e-148	437
Msa1204170	MtrunA17_Chr7g0266031	54.637	399	154	8	63	455	466	843	2.32e-144	435
Msa1204170	MtrunA17_Chr6g0449401	50.000	458	162	8	42	455	216	650	2.42e-144	429
Msa1204170	MtrunA17_Chr1g0179101	53.676	408	160	8	56	455	435	821	1.53e-143	432
Msa1204170	MtrunA17_Chr8g0381091	50.995	402	167	6	64	460	52	428	5.82e-139	407
Msa1204170	MtrunA17_Chr2g0285711	49.188	431	180	7	64	488	57	454	8.50e-138	404

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204170	AT2G26700.1	59.515	536	158	15	1	488	1	525	0.0	599
Msa1204170	AT4G26610.1	53.153	444	188	5	15	455	47	473	4.64e-158	458
Msa1204170	AT5G47750.1	57.250	400	144	7	64	455	164	544	1.46e-156	457
Msa1204170	AT5G55910.2	53.670	436	172	10	64	488	82	498	1.70e-154	449
Msa1204170	AT5G55910.1	53.670	436	172	10	64	488	82	498	1.70e-154	449
Msa1204170	AT5G40030.1	54.478	402	148	8	63	455	85	460	6.49e-148	432
Msa1204170	AT3G52890.2	52.656	433	181	8	30	455	481	896	2.02e-143	435
Msa1204170	AT3G52890.4	52.656	433	181	8	30	455	481	896	2.02e-143	435
Msa1204170	AT3G52890.1	52.656	433	181	8	30	455	481	896	2.02e-143	435
Msa1204170	AT3G52890.3	52.656	433	181	8	30	455	481	896	2.02e-143	435

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Find 101 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTCAAGAAGAGTTTG+AGG	0.433930	8_1:+59694108	Msa1204170:CDS
AAGAAACGGAGACGGAGCTT+CGG	0.498607	8_1:-59692618	None:intergenic
AAGAATCCAAATAAGAGAAT+TGG	0.366255	8_1:+59694442	Msa1204170:CDS
AAGACAGAACTGGTTGCATG+GGG	0.627836	8_1:-59694027	None:intergenic
AAGAGAATTGGAAGTTGTTT+GGG	0.326939	8_1:+59694454	Msa1204170:CDS
AATTGATGTTTAAGCTGAAA+TGG	0.406023	8_1:-59694625	None:intergenic
ACAAAGAGCAGAGATGGAGA+AGG	0.609995	8_1:+59692906	Msa1204170:CDS
ACAAGACAGAACTGGTTGCA+TGG	0.516518	8_1:-59694029	None:intergenic
ACAAGGTCATGGAAGTGCAG+TGG	0.630518	8_1:+59694228	Msa1204170:CDS
ACATACACCTCTTCTGTACT+AGG	0.447372	8_1:+59692649	Msa1204170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAGGTTCAATATCTATGTA+AGG	-	chr8_1:59692514-59692533	None:intergenic	30.0%
GTATACAAAGTAGGCAAAAA+AGG	-	chr8_1:59692955-59692974	None:intergenic	30.0%
CACTCATTTGAAAACAACAT+AGG	-	chr8_1:59693327-59693346	None:intergenic	30.0%
TTCAAATGAGTGTTTGTGAA+TGG	+	chr8_1:59693335-59693354	Msa1204170:intron	30.0%
GACCTATTTAACACCATAAT+AGG	+	chr8_1:59693470-59693489	Msa1204170:intron	30.0%
GATATTAACCAATTACGAAC+AGG	+	chr8_1:59693768-59693787	Msa1204170:intron	30.0%
TCTCTTACTAAAACATTCTC+TGG	-	chr8_1:59693866-59693885	None:intergenic	30.0%
AAATGTTCAAGAAGAGTTTG+AGG	+	chr8_1:59694108-59694127	Msa1204170:CDS	30.0%
AGCAAGATCAAAATCATTTG+TGG	+	chr8_1:59694168-59694187	Msa1204170:CDS	30.0%
GCAAGATCAAAATCATTTGT+GGG	+	chr8_1:59694169-59694188	Msa1204170:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	59692435	59694660	59692435	ID=Msa1204170;Name=Msa1204170
chr8_1	mRNA	59692435	59694660	59692435	ID=Msa1204170-mRNA-1;Parent=Msa1204170;Name=Msa1204170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=58\|1\|0.5\|1\|1\|1\|2\|0\|488
chr8_1	exon	59692435	59693088	59692435	ID=Msa1204170-mRNA-1:exon:19280;Parent=Msa1204170-mRNA-1
chr8_1	exon	59693790	59694660	59693790	ID=Msa1204170-mRNA-1:exon:19281;Parent=Msa1204170-mRNA-1
chr8_1	five_prime_UTR	59692435	59692492	59692435	ID=Msa1204170-mRNA-1:five_prime_utr;Parent=Msa1204170-mRNA-1
chr8_1	CDS	59692493	59693088	59692493	ID=Msa1204170-mRNA-1:cds;Parent=Msa1204170-mRNA-1
chr8_1	CDS	59693790	59694660	59693790	ID=Msa1204170-mRNA-1:cds;Parent=Msa1204170-mRNA-1

Gene Sequence

>Msa1204170

ATGGCCACCATCACCAAACCTTACATAGATATTGAACCTGACTACGACAGCAGCTCCTCTTCCATCACCGTACCTGAATCAACCCGTAGCTGGATGAGTAACCTCAGCTTCGGAAGCCGCCGTCGCCGAAGCTCCGTCTCCGTTTCTTCCACCACCACATACACCTCTTCTGTACTAGGTTCCAACGCTAAGCCTCATAAGGCAAACCAAGTTGCATGGGAGGCTATGAGTCGACTCCGGCTCGACCAAGGTCGAGTCGGACTCGACCACTTCCGCCTCCTTAAGCGACTTGGAAGCGGCGATATAGGGAATGTTTATCTTTGTCAGATAAGAAACCCTGTAGTTGGTTTGCCTCAGTGTTTCTATGCTATGAAAGTTGTTGATAGAGAAGCACTTGCTATAAGGAAGAAGCTACAAAGAGCAGAGATGGAGAAGGAGATTTTGGGGATGCTTGATCATCCTTTTTTGCCTACTTTGTATACTGATTTTGATGCTTCTCATTACTCTTGTTTGGTTATGGAGTTTTGTCCTGGTGGTGATTTGTATGCTTGTCGCCAACGCCAGCCTGGGAAGCGCTTTTCATTATCATCCTCCAAGTTTTATGCAGCTGAAACACTATTGGCACTAGAGTATCTACACATGATGGGAATAGTATACAGAGATTTAAAGCCAGAGAATGTTTTAGTAAGAGAAGATGGACACATAATGCTTTCAGATTTTGATCTTTCACTCAAATGTGACGTTGTTCCAAAGCTCTTAAGAAGCAAAACAAGATTAGAACGAAGTATCAAAACAACTACTACAATGAGATGTTCAACACCTTCTTGCATTTCCCCCATGCAACCAGTTCTGTCTTGTTTCTTACCATCATCAACAAAGAAAAAGAAAACTAAACTTGAAACTGTTATTAGAGAAAATGTTCAAGAAGAGTTTGAGGTTGATCTTGATCCTGATTTTGTAGCTGAACCAATTGAAGCAAGATCAAAATCATTTGTGGGGACACATGAATATTTAGCACCAGAAGTTATATTAGGACAAGGTCATGGAAGTGCAGTGGATTGGTGGACATTTGGTGTTTTTTTGTATGAAATGTTATATGGAAGAACACCATTTAAAGGTGAGAATAATGAGAAAACATTGGTTAATATCCTGAAACAACCTTTGACTTTTCCTAGGATTGGTGTTAGTAGTAATTATGAGTTTGAAGAGATGGTGAAAGTTCAAGATCTTATAAGCAAATTGTTGGTGAAGAATCCAAATAAGAGAATTGGAAGTTGTTTGGGTTCTGTTGAGATTAAAAGACATGAGTTTTTTAAGGGTGTTAATTGGGCTTTGATTAGATCAGTTAGACCCCCTGAGGTTCCTAGTGACAAGAATAAGATTAGGAATAGAGTTTTGGTGCCTAAATTAAGCAAGAAAGATAGAGATCAACCATTTCAGCTTAAACATCAATTTGATTACTTCTAA

Protein sequence

>Msa1204170

MATITKPYIDIEPDYDSSSSSITVPESTRSWMSNLSFGSRRRRSSVSVSSTTTYTSSVLGSNAKPHKANQVAWEAMSRLRLDQGRVGLDHFRLLKRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILGMLDHPFLPTLYTDFDASHYSCLVMEFCPGGDLYACRQRQPGKRFSLSSSKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRLERSIKTTTTMRCSTPSCISPMQPVLSCFLPSSTKKKKTKLETVIRENVQEEFEVDLDPDFVAEPIEARSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLTFPRIGVSSNYEFEEMVKVQDLISKLLVKNPNKRIGSCLGSVEIKRHEFFKGVNWALIRSVRPPEVPSDKNKIRNRVLVPKLSKKDRDQPFQLKHQFDYF*