AlfalfaGEDB | Msa1212340

M. sativa cultivar zhongmu-4 / Msa1212340

KEGG: -
GO: GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009705 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032879 GO:0036211 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0051049 GO:0051924 GO:0055082 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097272 GO:0097275 GO:0098588 GO:0098805 GO:0099402 GO:0140096 GO:1901564 GO:1905392
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212340	sp\|Q9FLJ8\|Y5613_ARATH	58.417	796	306	9	41	819	27	814	0.0	917

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212340	A0A072USC5	96.384	885	26	1	1	879	1	885	0.0	1756

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1212300	Msa1212340	0.959470	1.774401e-117	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212340	MtrunA17_Chr4g0061081	96.343	875	26	1	11	879	1	875	0.0	1733
Msa1212340	MtrunA17_Chr8g0352381	53.109	772	338	7	44	814	61	809	0.0	823
Msa1212340	MtrunA17_Chr2g0318301	47.630	844	407	16	43	879	28	843	0.0	724
Msa1212340	MtrunA17_Chr4g0030441	47.219	809	398	10	23	828	9	791	0.0	693
Msa1212340	MtrunA17_Chr2g0327671	44.737	836	410	15	20	841	10	807	0.0	645
Msa1212340	MtrunA17_Chr1g0202711	43.174	857	405	23	41	879	40	832	0.0	616
Msa1212340	MtrunA17_Chr6g0468691	42.681	813	404	24	41	834	22	791	0.0	580
Msa1212340	MtrunA17_Chr2g0292501	39.875	800	439	16	49	825	31	811	0.0	548
Msa1212340	MtrunA17_Chr8g0361611	39.088	811	406	17	21	828	12	737	7.11e-176	527
Msa1212340	MtrunA17_Chr1g0190581	38.411	906	485	22	9	879	1	868	1.23e-175	530

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212340	AT5G61350.1	58.417	796	306	9	41	819	27	814	0.0	917
Msa1212340	AT4G39110.1	53.856	778	329	8	42	814	52	804	0.0	834
Msa1212340	AT2G21480.1	52.746	783	336	9	42	817	51	806	0.0	821
Msa1212340	AT5G54380.1	47.079	873	422	15	23	879	7	855	0.0	704
Msa1212340	AT5G59700.1	46.294	823	374	19	44	857	27	790	0.0	657
Msa1212340	AT3G46290.1	46.267	817	387	18	18	828	6	776	0.0	653
Msa1212340	AT5G24010.1	45.408	784	374	18	41	812	25	766	0.0	605
Msa1212340	AT1G30570.1	42.513	788	405	18	47	810	32	795	0.0	574
Msa1212340	AT3G51550.1	39.821	894	452	29	43	879	31	895	0.0	557
Msa1212340	AT2G39360.1	38.273	776	427	14	48	812	31	765	5.36e-174	524

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Find 155 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCATTCTTATCAGAT+AGG	0.454199	8_1:-72221227	None:intergenic
AAAATGTTATATGAACCATC+AGG	0.560741	8_1:-72221016	None:intergenic
AAACTTGTTAGATTGTACGA+AGG	0.646713	8_1:-72220662	None:intergenic
AAATCCATTCAAAATTGCGT+TGG	0.534433	8_1:-72221455	None:intergenic
AAATCTGATATATACTCATT+TGG	0.401646	8_1:+72222617	Msa1212340:CDS
AACAAGCTAACTTGGCTGAT+TGG	0.384758	8_1:+72222699	Msa1212340:CDS
AACCAACTTTCAATCTAAGT+TGG	0.494338	8_1:+72221179	Msa1212340:CDS
AACCCTTTGAATTCTCCAAG+TGG	0.639665	8_1:-72220902	None:intergenic
AACCTATTAGTGACACTAGG+TGG	0.677903	8_1:-72222020	None:intergenic
AACTGAAATTTGAATATCTT+CGG	0.352242	8_1:-72220483	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGTGGTAGAATTAGAAT+TGG	-	chr8_1:72220342-72220361	None:intergenic	30.0%
TGATAAAGAATGATCAATGG+TGG	-	chr8_1:72220357-72220376	None:intergenic	30.0%
AGGTGATAAAGAATGATCAA+TGG	-	chr8_1:72220360-72220379	None:intergenic	30.0%
TATAAAGGCAATGATGAAGA+AGG	-	chr8_1:72220542-72220561	None:intergenic	30.0%
ACTCTTGCAGTTTGATATAA+AGG	-	chr8_1:72220557-72220576	None:intergenic	30.0%
GAATCTGATATAAGTGTATC+AGG	-	chr8_1:72220866-72220885	None:intergenic	30.0%
TCTTATAGAGTAAATGTTGG+TGG	+	chr8_1:72220947-72220966	Msa1212340:CDS	30.0%
AACCAACTTTCAATCTAAGT+TGG	+	chr8_1:72221179-72221198	Msa1212340:CDS	30.0%
ATCCAACTTAGATTGAAAGT+TGG	-	chr8_1:72221184-72221203	None:intergenic	30.0%
GGTTCATGTAATATCACAAA+TGG	+	chr8_1:72221385-72221404	Msa1212340:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	72220248	72223111	72220248	ID=Msa1212340;Name=Msa1212340
chr8_1	mRNA	72220248	72223111	72220248	ID=Msa1212340-mRNA-1;Parent=Msa1212340;Name=Msa1212340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|1\|1\|2\|0\|879
chr8_1	exon	72220248	72222201	72220248	ID=Msa1212340-mRNA-1:exon:24338;Parent=Msa1212340-mRNA-1
chr8_1	exon	72222426	72223111	72222426	ID=Msa1212340-mRNA-1:exon:24339;Parent=Msa1212340-mRNA-1
chr8_1	CDS	72220248	72222201	72220248	ID=Msa1212340-mRNA-1:cds;Parent=Msa1212340-mRNA-1
chr8_1	CDS	72222426	72223111	72222426	ID=Msa1212340-mRNA-1:cds;Parent=Msa1212340-mRNA-1

Gene Sequence

>Msa1212340

ATGGAAGAAGAAGAGAATAAAGAGGTTCATATGAAACCTTCATTTAATTTCTTCTCCATTTTCATTCTTATCATTTTTTTATTTACACCCTCCAATTCTAATTCTACCACCATTGATCATTCTTTATCACCTTATGTTAATTATCTTATTGATTGTGGCTCTTCCACCAAAACTCAACTAGCAGATGGTAGAATCTTCAAATCTGATCGAGAAACCACTTCTTTTCTTTCAACAACCGAAGATATTCAAATTTCAGTTGATTTCATTAACATAAACCTCCCTCCTTCATTGCCTTCTTCATCATTGCCTTTATATCAAACTGCAAGAGTTTTCACAGAACAATCTTCGTACACTTTTTACATTTCCAAAACTGGTAGACTTTGGATTCGTCTTTACTTCTTTCCTATTTCTAACCCTTCGTACAATCTAACAAGTTTTGTTTTCTCTGTTTATACGGATCACTTTGTACTCTTGCATGAATTCTCTCATAGTAATAACAATTCGCTTGTTTTCAAGGAATATCTTGTTAATGTTTCTGATACTAGATTCTCTCTCAAGTTCATACCAAAAAAAAAGTCCTTTGCATTCATCAATGCCATTGAAATTGTTTCAGCTCCTGATACACTTATATCAGATTCAGCAACTCAAGTTTCACCACTTGGAGAATTCAAAGGGTTGACGAAATCAGCTTTGCAAGTATCTTATAGAGTAAATGTTGGTGGCCCCACCATAACTCCTGATGGTGACACCTTGTCAAGAACATGGGAACCTGATGGTTCATATAACATTTTTCCACAAGGCTCTTCCAATGTTTCGGTCCCCAAAAAACGGATAAAGTATCCACAAGATAGCGTTGTAACTGTAACACCCTTAATTGCTCCAAACTCAGTTTATGCAAGTGGTGTACAGATGAAGGAATCAAGATTTATGCAACCAACTTTCAATCTAAGTTGGATGGTGAATGTTGAAAGGAGCTATTCCTATCTGATAAGAATGCATTTTTGTGACATTGTTAGCAAAAGTCTTGATCAATTATATTTCAATGTATACATCAATGGGTTTGAGGTTGTGGAAGCTTTGGACCTTTCATCTGAAACCAAAGCCTTATCAACAGCTTCTTACAAGGACTTTGTGCTTGGTTCATGTAATATCACAAATGGTTCCATCTTGATTCAAGTAGGACCAACTTATCTTCAACAAAGTACAACCAACGCAATTTTGAATGGATTTGAGGTGATGAAAATGAGCAATAGTGCCAACAGTTTGGATGGTTTTTTCTCTGTTGATGGAAAATATAAAGGACCAAGTTTAACATCCAACATAATGAAAATTGTTGCTATTGTTGGCTTGGTATTGGCTGTGATATCATTGTTGTTACTAGTAGTGATGTATATTAGGTGGTTAAAAAGACCTTTAGATTGGAAAGATAGTAGAGGTTTCTCTTCATGGCTCTTACCTCTTTGTCCAAAATCTAAAAAAAGTTGCAGCACAAACGCAAATGCATTTGATTCACCTAAGAATAAGCATGGTGGTCATGATGTTCATCACTCTCCAAGAGGGACAGGAAGGTTCTTTCATTTCATCGAATTGCAACGAGCTACAGATAATTTTGATGAAAAGAGAGTTATTGGTTACGGAGGATTCGGTAAAGTGTACCTTGGGACATTGGATGATGGAACAAATGTTGCTGTAAAAAGAGGATGTGGTGGTTCTGAACAAGGAATAAATGAGTTCAGAACCGAACTAAAGATGCTTTCTAAGCTGCGACATCGCCACCTAGTGTCACTAATAGGTTTCTGTGATGAAAACTCAGAGATGGTTCTTGTATATGATTACATGTCTAATGGCCCTTTTCGTTCGCACCTTTATGGCTCCAACTTTTCTCCTTTGTCATGGCAAAAGAGGCTTGAAATATGCATTGGCGCTGCTCGTGGTTTGCATTATCTCCATACAGGTGCATCTCAAAGTATCATACATCGTGACGTGAAGACAACAAATATACTCTTGGATGAGAATTATGTTGCCAAGGTTTCTGATTTTGGTTTATCTAAAGCTATCCAAGATAAATCTCAAATAAGCACTGCTGTTAAGGGAAGTTTTGGATACCTAGATCCTGAATATTATAGGAGCCAACAACTTACTCAAAAATCTGATATATACTCATTTGGTGTAGTCCTCTTTGAGGTATTATGTGCTAGGCCAGTTGTTTCTCCAACATTGCCAAGAGAACAAGCTAACTTGGCTGATTGGGTACTGCAGCAATATAGCACAGATAAGCTTCATAAGGTGATTGATCAAAATATTGCTGATACTATAAGTCCTGAATCATACAAGATTTTTGTACAAATTGGTGTGAAATGTTTAGCTGATCATGGAGTTGATAGGCCTAGTATGGGTGATGTGTTGTGGCATTTGGAACATGCTTTACAACAACAGTTAGCTTCATCACATATTGATACTATACCTATAGATAACAACACAAATTCACATATTCATACTACACCTATAGATAGCAACACAAATTCACATGAAATTGACAGAAATAATGATAACCCACATGGTGTTACAAGTGATGAGTCTGATTGCACAACTCCTAATTCTGATTTGTTTTCTCTGATTGGTAATTTCCAAGGAAGGTGA

Protein sequence

>Msa1212340

MEEEENKEVHMKPSFNFFSIFILIIFLFTPSNSNSTTIDHSLSPYVNYLIDCGSSTKTQLADGRIFKSDRETTSFLSTTEDIQISVDFININLPPSLPSSSLPLYQTARVFTEQSSYTFYISKTGRLWIRLYFFPISNPSYNLTSFVFSVYTDHFVLLHEFSHSNNNSLVFKEYLVNVSDTRFSLKFIPKKKSFAFINAIEIVSAPDTLISDSATQVSPLGEFKGLTKSALQVSYRVNVGGPTITPDGDTLSRTWEPDGSYNIFPQGSSNVSVPKKRIKYPQDSVVTVTPLIAPNSVYASGVQMKESRFMQPTFNLSWMVNVERSYSYLIRMHFCDIVSKSLDQLYFNVYINGFEVVEALDLSSETKALSTASYKDFVLGSCNITNGSILIQVGPTYLQQSTTNAILNGFEVMKMSNSANSLDGFFSVDGKYKGPSLTSNIMKIVAIVGLVLAVISLLLLVVMYIRWLKRPLDWKDSRGFSSWLLPLCPKSKKSCSTNANAFDSPKNKHGGHDVHHSPRGTGRFFHFIELQRATDNFDEKRVIGYGGFGKVYLGTLDDGTNVAVKRGCGGSEQGINEFRTELKMLSKLRHRHLVSLIGFCDENSEMVLVYDYMSNGPFRSHLYGSNFSPLSWQKRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENYVAKVSDFGLSKAIQDKSQISTAVKGSFGYLDPEYYRSQQLTQKSDIYSFGVVLFEVLCARPVVSPTLPREQANLADWVLQQYSTDKLHKVIDQNIADTISPESYKIFVQIGVKCLADHGVDRPSMGDVLWHLEHALQQQLASSHIDTIPIDNNTNSHIHTTPIDSNTNSHEIDRNNDNPHGVTSDESDCTTPNSDLFSLIGNFQGR*