Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1213400 | XP_027192752.1 | 73.301 | 206 | 54 | 1 | 1 | 205 | 1 | 206 | 3.65e-89 | 271 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1213400 | sp|Q9FMC2|BZP43_ARATH | 41.667 | 96 | 54 | 1 | 86 | 179 | 52 | 147 | 6.68e-17 | 78.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa1213400 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1213340 | Msa1213400 | 0.879581 | 1.109023e-69 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1213400 | MtrunA17_Chr7g0225661 | 35.714 | 126 | 66 | 3 | 79 | 200 | 55 | 169 | 8.17e-17 | 75.5 |
Msa1213400 | MtrunA17_Chr8g0341311 | 36.364 | 121 | 62 | 3 | 84 | 200 | 50 | 159 | 1.24e-16 | 74.7 |
Msa1213400 | MtrunA17_Chr7g0220571 | 42.342 | 111 | 60 | 1 | 73 | 179 | 52 | 162 | 1.03e-15 | 72.4 |
Msa1213400 | MtrunA17_Chr6g0456061 | 41.441 | 111 | 60 | 1 | 76 | 181 | 57 | 167 | 1.22e-15 | 72.4 |
Msa1213400 | MtrunA17_Chr5g0400901 | 36.232 | 138 | 71 | 6 | 73 | 202 | 27 | 155 | 1.20e-12 | 63.5 |
Msa1213400 | MtrunA17_Chr4g0035414 | 35.000 | 120 | 65 | 3 | 93 | 199 | 16 | 135 | 2.44e-12 | 62.4 |
Msa1213400 | MtrunA17_Chr1g0194681 | 31.624 | 117 | 73 | 1 | 84 | 193 | 7 | 123 | 9.10e-12 | 60.8 |
Msa1213400 | MtrunA17_Chr3g0144941 | 36.275 | 102 | 55 | 2 | 93 | 184 | 16 | 117 | 1.35e-11 | 60.5 |
Msa1213400 | MtrunA17_Chr4g0054291 | 29.870 | 154 | 86 | 5 | 25 | 172 | 6 | 143 | 3.97e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1213400 | AT5G60830.1 | 54.118 | 85 | 39 | 0 | 102 | 186 | 69 | 153 | 1.40e-21 | 88.6 |
Msa1213400 | AT5G38800.1 | 41.667 | 96 | 54 | 1 | 86 | 179 | 52 | 147 | 6.80e-18 | 78.2 |
Msa1213400 | AT3G30530.1 | 43.000 | 100 | 57 | 0 | 82 | 181 | 59 | 158 | 7.70e-18 | 78.2 |
Msa1213400 | AT1G13600.1 | 42.105 | 95 | 50 | 1 | 90 | 179 | 67 | 161 | 3.32e-16 | 74.3 |
Msa1213400 | AT5G15830.1 | 36.937 | 111 | 64 | 1 | 92 | 196 | 56 | 166 | 1.80e-14 | 69.3 |
Msa1213400 | AT2G04038.1 | 40.426 | 94 | 50 | 1 | 92 | 179 | 56 | 149 | 1.70e-13 | 66.2 |
Msa1213400 | AT2G18160.1 | 33.043 | 115 | 70 | 1 | 90 | 197 | 17 | 131 | 7.81e-12 | 62.0 |
Msa1213400 | AT1G75390.1 | 40.566 | 106 | 55 | 2 | 82 | 179 | 11 | 116 | 1.39e-11 | 61.2 |
Find 58 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAGTTCATGATGGGTTTC+TGG | 0.068192 | 8_1:-73526146 | Msa1213390:intron |
CAACAAAATGCTCAACTTAA+AGG | 0.201570 | 8_1:+73526546 | Msa1213400:CDS |
CCAACAAGTAAATGATCTTT+TGG | 0.211603 | 8_1:-73526503 | Msa1213390:intron |
ATGAGTTGGGAGAAGATTTA+TGG | 0.268120 | 8_1:-73526305 | Msa1213390:intron |
AGCCTGCAAAACCTGGAAAA+TGG | 0.302202 | 8_1:+73526168 | Msa1213400:CDS |
CCAAAAGATCATTTACTTGT+TGG | 0.311300 | 8_1:+73526503 | Msa1213400:CDS |
GTGAGGTATACCAACATTTC+CGG | 0.334411 | 8_1:-73526616 | Msa1213390:intron |
TGAGTTCATGATGGGTTTCT+GGG | 0.383025 | 8_1:-73526145 | Msa1213390:intron |
TTTATGGTCTGGAATTTGAA+TGG | 0.416953 | 8_1:-73526289 | Msa1213390:intron |
GAACTCAAGCCTGCAAAACC+TGG | 0.431180 | 8_1:+73526161 | Msa1213400:CDS |
TTGGGAGAAGATTTATGGTC+TGG | 0.437689 | 8_1:-73526300 | Msa1213390:intron |
CGGAAGCATAGGGTACTTCA+TGG | 0.438301 | 8_1:-73526092 | Msa1213390:intron |
TTGCAGGCTTGAGTTCATGA+TGG | 0.445548 | 8_1:-73526154 | Msa1213390:intron |
GTTACTGTTTGATGATGAGT+TGG | 0.446587 | 8_1:-73526319 | Msa1213390:intron |
TGAAGCTGGGAGTAGTGAAA+TGG | 0.452683 | 8_1:-73526243 | Msa1213390:intron |
TTATGGTCTGGAATTTGAAT+GGG | 0.454968 | 8_1:-73526288 | Msa1213390:intron |
TTCATGATGGGTTTCTGGGT+TGG | 0.465026 | 8_1:-73526141 | Msa1213390:intron |
AGCGGTACTATCTACTTTGT+TGG | 0.466162 | 8_1:+73526587 | Msa1213400:CDS |
TGCAGGCTTGAGTTCATGAT+GGG | 0.472548 | 8_1:-73526153 | Msa1213390:intron |
ATAGGAAAGGTACTGTATTA+CGG | 0.473575 | 8_1:-73526112 | Msa1213390:intron |
TTGATGATCGAAAGAAGAAA+AGG | 0.480340 | 8_1:+73526370 | Msa1213400:CDS |
AGACGAGTTGAAAGGTTGGC+TGG | 0.483172 | 8_1:-73526657 | Msa1213390:intron |
TGTCGTTAGAGAGGTGAAGC+TGG | 0.483487 | 8_1:-73526257 | Msa1213390:intron |
ACCCATCTGTATCCATCTCA+AGG | 0.506932 | 8_1:+73526207 | Msa1213400:CDS |
CTACTCAAAATCGCTATGCT+CGG | 0.512535 | 8_1:-73526700 | Msa1213390:intron |
TCTACTTTGTTGGTTACGAC+CGG | 0.517483 | 8_1:+73526597 | Msa1213400:CDS |
TACTCAAAATCGCTATGCTC+GGG | 0.518651 | 8_1:-73526699 | Msa1213390:intron |
TTACTGTTTGATGATGAGTT+GGG | 0.525916 | 8_1:-73526318 | Msa1213390:intron |
ATTGATGGTTCAGCGCCTGC+AGG | 0.527456 | 8_1:-73526476 | Msa1213390:intron |
AGGTTGGCTGGGAAGCCACT+AGG | 0.529008 | 8_1:-73526645 | Msa1213390:intron |
ATGGGTTTCTGGGTTGGAGA+AGG | 0.532216 | 8_1:-73526135 | Msa1213390:intron |
GATACAGATGGGTCAAAGAA+TGG | 0.534656 | 8_1:-73526197 | Msa1213390:intron |
GTACTGTATTACGGAAGCAT+AGG | 0.535976 | 8_1:-73526103 | Msa1213390:intron |
CTGGGAAGCCACTAGGGATG+TGG | 0.538645 | 8_1:-73526638 | Msa1213390:intron |
TTTCTGGGTTGGAGAAGGAT+AGG | 0.544788 | 8_1:-73526130 | Msa1213390:intron |
GTATCAAGTGAATCACCTGC+AGG | 0.567327 | 8_1:+73526461 | Msa1213400:CDS |
ATATCATGTAAACCTTGAGA+TGG | 0.573761 | 8_1:-73526219 | Msa1213390:intron |
TCAAACAGTAACAACAACTC+TGG | 0.574952 | 8_1:+73526330 | Msa1213400:CDS |
GTCGTTAGAGAGGTGAAGCT+GGG | 0.575441 | 8_1:-73526256 | Msa1213390:intron |
GACGAGTTGAAAGGTTGGCT+GGG | 0.575767 | 8_1:-73526656 | Msa1213390:intron |
AACCTTGAGATGGATACAGA+TGG | 0.576394 | 8_1:-73526209 | Msa1213390:intron |
TACTGTATTACGGAAGCATA+GGG | 0.578817 | 8_1:-73526102 | Msa1213390:intron |
TTGAAACTAGACGAGTTGAA+AGG | 0.584520 | 8_1:-73526665 | Msa1213390:intron |
GGTTGGCTGGGAAGCCACTA+GGG | 0.587937 | 8_1:-73526644 | Msa1213390:intron |
TTGGTTACGACCGGAAATGT+TGG | 0.596096 | 8_1:+73526606 | Msa1213400:CDS |
AACTAGACGAGTTGAAAGGT+TGG | 0.596375 | 8_1:-73526661 | Msa1213390:intron |
AGATAGTACCGCTTGAAGAG+AGG | 0.597446 | 8_1:-73526577 | Msa1213390:intron |
CAAAACCTGGAAAATGGAGA+AGG | 0.605645 | 8_1:+73526174 | Msa1213400:CDS |
CAAAGTTTCCTCTCTTCAAG+CGG | 0.609354 | 8_1:+73526569 | Msa1213400:CDS |
CAACAACTCTGGTAAAGCAA+AGG | 0.613348 | 8_1:+73526341 | Msa1213400:CDS |
GGTGATTCACTTGATACCAC+AGG | 0.615500 | 8_1:-73526455 | Msa1213390:intron |
ACCTTGAGATGGATACAGAT+GGG | 0.616103 | 8_1:-73526208 | Msa1213390:intron |
CTAACAGAGAATCTGCTCGT+CGG | 0.675721 | 8_1:+73526400 | Msa1213400:CDS |
AGAGATGGTACGCAATGACG+AGG | 0.676375 | 8_1:+73526065 | None:intergenic |
ATACCTCACCACATCCCTAG+TGG | 0.679014 | 8_1:+73526630 | Msa1213400:CDS |
AGCAGCGAATTGAAGTCCTG+TGG | 0.703639 | 8_1:+73526439 | Msa1213400:CDS |
AAGCCACTAGGGATGTGGTG+AGG | 0.721984 | 8_1:-73526633 | Msa1213390:intron |
GGGTTGGAGAAGGATAGGAA+AGG | 0.730828 | 8_1:-73526125 | Msa1213390:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAACAAGTAAATGATCTTTT+GGG | - | chr8_1:73526505-73526524 | Msa1213390:intron | 25.0% |
!! | ATAGGAAAGGTACTGTATTA+CGG | - | chr8_1:73526115-73526134 | Msa1213390:intron | 30.0% |
ATATCATGTAAACCTTGAGA+TGG | - | chr8_1:73526222-73526241 | Msa1213390:intron | 30.0% | |
! | TTATGGTCTGGAATTTGAAT+GGG | - | chr8_1:73526291-73526310 | Msa1213390:intron | 30.0% |
! | TTTATGGTCTGGAATTTGAA+TGG | - | chr8_1:73526292-73526311 | Msa1213390:intron | 30.0% |
!! | TTACTGTTTGATGATGAGTT+GGG | - | chr8_1:73526321-73526340 | Msa1213390:intron | 30.0% |
! | TTTTCTTCTTTCGATCATCA+AGG | - | chr8_1:73526371-73526390 | Msa1213390:intron | 30.0% |
! | TTGATGATCGAAAGAAGAAA+AGG | + | chr8_1:73526370-73526389 | Msa1213400:CDS | 30.0% |
! | CCAACAAGTAAATGATCTTT+TGG | - | chr8_1:73526506-73526525 | Msa1213390:intron | 30.0% |
CCAAAAGATCATTTACTTGT+TGG | + | chr8_1:73526503-73526522 | Msa1213400:CDS | 30.0% | |
!! | CATTTTGTTGGTTGATTAGT+TGG | - | chr8_1:73526536-73526555 | Msa1213390:intron | 30.0% |
!!! | CTTTAAGTTGAGCATTTTGT+TGG | - | chr8_1:73526548-73526567 | Msa1213390:intron | 30.0% |
CAACAAAATGCTCAACTTAA+AGG | + | chr8_1:73526546-73526565 | Msa1213400:CDS | 30.0% | |
! | TACTGTATTACGGAAGCATA+GGG | - | chr8_1:73526105-73526124 | Msa1213390:intron | 35.0% |
! | ATGAGTTGGGAGAAGATTTA+TGG | - | chr8_1:73526308-73526327 | Msa1213390:intron | 35.0% |
!! | GTTACTGTTTGATGATGAGT+TGG | - | chr8_1:73526322-73526341 | Msa1213390:intron | 35.0% |
TCAAACAGTAACAACAACTC+TGG | + | chr8_1:73526330-73526349 | Msa1213400:CDS | 35.0% | |
!!! | TGATCTTTTGGGACAATTGA+TGG | - | chr8_1:73526494-73526513 | Msa1213390:intron | 35.0% |
! | TTGAAACTAGACGAGTTGAA+AGG | - | chr8_1:73526668-73526687 | Msa1213390:intron | 35.0% |
! | GTACTGTATTACGGAAGCAT+AGG | - | chr8_1:73526106-73526125 | Msa1213390:intron | 40.0% |
!! | TGAGTTCATGATGGGTTTCT+GGG | - | chr8_1:73526148-73526167 | Msa1213390:intron | 40.0% |
!! | TTGAGTTCATGATGGGTTTC+TGG | - | chr8_1:73526149-73526168 | Msa1213390:intron | 40.0% |
CAAAACCTGGAAAATGGAGA+AGG | + | chr8_1:73526174-73526193 | Msa1213400:CDS | 40.0% | |
GATACAGATGGGTCAAAGAA+TGG | - | chr8_1:73526200-73526219 | Msa1213390:intron | 40.0% | |
ACCTTGAGATGGATACAGAT+GGG | - | chr8_1:73526211-73526230 | Msa1213390:intron | 40.0% | |
AACCTTGAGATGGATACAGA+TGG | - | chr8_1:73526212-73526231 | Msa1213390:intron | 40.0% | |
TTGGGAGAAGATTTATGGTC+TGG | - | chr8_1:73526303-73526322 | Msa1213390:intron | 40.0% | |
CAACAACTCTGGTAAAGCAA+AGG | + | chr8_1:73526341-73526360 | Msa1213400:CDS | 40.0% | |
CAAAGTTTCCTCTCTTCAAG+CGG | + | chr8_1:73526569-73526588 | Msa1213400:CDS | 40.0% | |
AGCGGTACTATCTACTTTGT+TGG | + | chr8_1:73526587-73526606 | Msa1213400:CDS | 40.0% | |
! | TCTACTTTGTTGGTTACGAC+CGG | + | chr8_1:73526597-73526616 | Msa1213400:CDS | 40.0% |
GTGAGGTATACCAACATTTC+CGG | - | chr8_1:73526619-73526638 | Msa1213390:intron | 40.0% | |
! | AACTAGACGAGTTGAAAGGT+TGG | - | chr8_1:73526664-73526683 | Msa1213390:intron | 40.0% |
TACTCAAAATCGCTATGCTC+GGG | - | chr8_1:73526702-73526721 | Msa1213390:intron | 40.0% | |
CTACTCAAAATCGCTATGCT+CGG | - | chr8_1:73526703-73526722 | Msa1213390:intron | 40.0% | |
! | TTTCTGGGTTGGAGAAGGAT+AGG | - | chr8_1:73526133-73526152 | Msa1213390:intron | 45.0% |
!! | TTCATGATGGGTTTCTGGGT+TGG | - | chr8_1:73526144-73526163 | Msa1213390:intron | 45.0% |
TGCAGGCTTGAGTTCATGAT+GGG | - | chr8_1:73526156-73526175 | Msa1213390:intron | 45.0% | |
TTGCAGGCTTGAGTTCATGA+TGG | - | chr8_1:73526157-73526176 | Msa1213390:intron | 45.0% | |
AGCCTGCAAAACCTGGAAAA+TGG | + | chr8_1:73526168-73526187 | Msa1213400:CDS | 45.0% | |
! | CTCCATTTTCCAGGTTTTGC+AGG | - | chr8_1:73526173-73526192 | Msa1213390:intron | 45.0% |
! | AATGGCCTTCTCCATTTTCC+AGG | - | chr8_1:73526182-73526201 | Msa1213390:intron | 45.0% |
ACCCATCTGTATCCATCTCA+AGG | + | chr8_1:73526207-73526226 | Msa1213400:CDS | 45.0% | |
TGAAGCTGGGAGTAGTGAAA+TGG | - | chr8_1:73526246-73526265 | Msa1213390:intron | 45.0% | |
CTAACAGAGAATCTGCTCGT+CGG | + | chr8_1:73526400-73526419 | Msa1213400:CDS | 45.0% | |
GGTGATTCACTTGATACCAC+AGG | - | chr8_1:73526458-73526477 | Msa1213390:intron | 45.0% | |
GTATCAAGTGAATCACCTGC+AGG | + | chr8_1:73526461-73526480 | Msa1213400:CDS | 45.0% | |
AGATAGTACCGCTTGAAGAG+AGG | - | chr8_1:73526580-73526599 | Msa1213390:intron | 45.0% | |
TTGGTTACGACCGGAAATGT+TGG | + | chr8_1:73526606-73526625 | Msa1213400:CDS | 45.0% | |
! | CGGAAGCATAGGGTACTTCA+TGG | - | chr8_1:73526095-73526114 | Msa1213390:intron | 50.0% |
GGGTTGGAGAAGGATAGGAA+AGG | - | chr8_1:73526128-73526147 | Msa1213390:intron | 50.0% | |
! | ATGGGTTTCTGGGTTGGAGA+AGG | - | chr8_1:73526138-73526157 | Msa1213390:intron | 50.0% |
GAACTCAAGCCTGCAAAACC+TGG | + | chr8_1:73526161-73526180 | Msa1213400:CDS | 50.0% | |
GTCGTTAGAGAGGTGAAGCT+GGG | - | chr8_1:73526259-73526278 | Msa1213390:intron | 50.0% | |
TGTCGTTAGAGAGGTGAAGC+TGG | - | chr8_1:73526260-73526279 | Msa1213390:intron | 50.0% | |
AGCAGCGAATTGAAGTCCTG+TGG | + | chr8_1:73526439-73526458 | Msa1213400:CDS | 50.0% | |
ATACCTCACCACATCCCTAG+TGG | + | chr8_1:73526630-73526649 | Msa1213400:CDS | 50.0% | |
! | GACGAGTTGAAAGGTTGGCT+GGG | - | chr8_1:73526659-73526678 | Msa1213390:intron | 50.0% |
! | AGACGAGTTGAAAGGTTGGC+TGG | - | chr8_1:73526660-73526679 | Msa1213390:intron | 50.0% |
GACTGTCGCTGTCGTTAGAG+AGG | - | chr8_1:73526269-73526288 | Msa1213390:intron | 55.0% | |
! | ATTGATGGTTCAGCGCCTGC+AGG | - | chr8_1:73526479-73526498 | Msa1213390:intron | 55.0% |
AAGCCACTAGGGATGTGGTG+AGG | - | chr8_1:73526636-73526655 | Msa1213390:intron | 55.0% | |
CTGGGAAGCCACTAGGGATG+TGG | - | chr8_1:73526641-73526660 | Msa1213390:intron | 60.0% | |
! | GGTTGGCTGGGAAGCCACTA+GGG | - | chr8_1:73526647-73526666 | Msa1213390:intron | 60.0% |
! | AGGTTGGCTGGGAAGCCACT+AGG | - | chr8_1:73526648-73526667 | Msa1213390:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 73526069 | 73526722 | 73526069 | ID=Msa1213400;Name=Msa1213400 |
chr8_1 | mRNA | 73526069 | 73526722 | 73526069 | ID=Msa1213400-mRNA-1;Parent=Msa1213400;Name=Msa1213400-mRNA-1;_AED=0.10;_eAED=0.35;_QI=0|-1|0|1|-1|1|1|0|217 |
chr8_1 | exon | 73526069 | 73526722 | 73526069 | ID=Msa1213400-mRNA-1:exon:24995;Parent=Msa1213400-mRNA-1 |
chr8_1 | CDS | 73526069 | 73526722 | 73526069 | ID=Msa1213400-mRNA-1:cds;Parent=Msa1213400-mRNA-1 |
Gene Sequence |
Protein sequence |