AlfalfaGEDB | Msa1216270

M. sativa cultivar zhongmu-4 / Msa1216270

KEGG: -
GO: GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1216270	XP_013458189.1	92.574	606	2	2	1	606	1	563	0.0	1146

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1216270	sp\|Q8W4J2\|MPK16_ARATH	69.936	622	115	10	1	606	1	566	0.0	849

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1216270	A0A072V276	92.574	606	2	2	1	606	1	563	0.0	1146

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0357890	Msa1216270	0.858863	6.150776e-63	-8.615850e-47
Msa1216270	Msa1216540	0.916220	2.315254e-85	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1216270	MtrunA17_Chr4g0065851	92.574	606	2	2	1	606	1	563	0.0	1146
Msa1216270	MtrunA17_Chr2g0287271	79.445	613	69	9	1	606	1	563	0.0	943
Msa1216270	MtrunA17_Chr3g0096631	62.881	590	161	7	1	587	1	535	0.0	706
Msa1216270	MtrunA17_Chr8g0392811	72.234	461	84	3	4	463	96	513	0.0	699
Msa1216270	MtrunA17_Chr6g0482681	73.448	467	80	3	4	469	68	491	0.0	691
Msa1216270	MtrunA17_Chr8g0359091	63.138	529	142	4	5	533	6	481	0.0	654
Msa1216270	MtrunA17_Chr2g0314321	67.500	480	96	3	1	463	1	437	0.0	649
Msa1216270	MtrunA17_Chr5g0443351	64.032	506	134	3	5	510	2	459	0.0	647
Msa1216270	MtrunA17_Chr4g0045841	47.765	358	153	5	31	388	61	384	1.11e-112	342
Msa1216270	MtrunA17_Chr4g0030151	47.075	359	155	5	31	388	45	369	2.72e-111	338

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1216270	AT5G19010.1	69.936	622	115	10	1	606	1	566	849
Msa1216270	AT3G18040.4	75.055	457	71	2	4	460	111	524	693
Msa1216270	AT3G18040.3	75.055	457	71	2	4	460	111	524	692
Msa1216270	AT2G42880.1	72.138	463	86	2	1	463	1	420	691
Msa1216270	AT3G18040.1	75.055	457	71	2	4	460	2	415	690
Msa1216270	AT2G42880.2	66.474	519	122	5	1	518	1	468	689
Msa1216270	AT3G18040.5	75.388	451	68	2	10	460	3	410	686
Msa1216270	AT1G73670.1	71.366	454	87	2	7	460	72	482	684
Msa1216270	AT1G18150.3	71.613	465	82	4	1	460	82	501	664
Msa1216270	AT1G18150.2	71.613	465	82	4	1	460	82	501	664

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Find 165 sgRNAs with CRISPR-Local

Find 920 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGAACAGAAGTGGT+TGG	0.557025	8_1:-77896735	None:intergenic
AAACTGAAGATTTGCGATTT+TGG	0.185042	8_1:+77898973	Msa1216270:CDS
AAAGTTGCTGCTGCTCCAGG+TGG	0.603065	8_1:+77903187	Msa1216270:CDS
AAATCAACCTCTTCCGCAGT+AGG	0.581780	8_1:-77899729	None:intergenic
AACAGATAACACATGAGATA+TGG	0.461911	8_1:-77903712	None:intergenic
AACTACAAATGTCATTCTTG+TGG	0.567476	8_1:-77903647	None:intergenic
AACTCGTACGGATAGTGCTG+TGG	0.631253	8_1:+77900493	Msa1216270:CDS
AACTGGCTTCTTCTTACGCA+TGG	0.531119	8_1:-77899622	None:intergenic
AACTTCTTTAATGCAACACT+TGG	0.486654	8_1:-77900806	None:intergenic
AAGCCGGTCATTGATAGGAG+TGG	0.649025	8_1:+77900832	Msa1216270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGATCTATCTATCTATCT+CGG	-	chr8_1:77896503-77896522	None:intergenic	30.0%
ACTAACTGAAAAGGAATTGA+TGG	-	chr8_1:77896606-77896625	None:intergenic	30.0%
ATTAAGGTTGTAAGAAACAG+CGG	-	chr8_1:77896686-77896705	None:intergenic	30.0%
GTTCTGTAATTTATGCTCTA+TGG	+	chr8_1:77897026-77897045	Msa1216270:intron	30.0%
GTAATTTATGCTCTATGGAT+TGG	+	chr8_1:77897031-77897050	Msa1216270:intron	30.0%
AGGAAAACAAATAGTCAGTT+TGG	+	chr8_1:77897211-77897230	Msa1216270:intron	30.0%
AGTTTGGATCGTATTTCATA+AGG	-	chr8_1:77897257-77897276	None:intergenic	30.0%
TATTCAATTGTGCATTGTGT+TGG	+	chr8_1:77897726-77897745	Msa1216270:intron	30.0%
ACTGGATTTAACTCACAATA+GGG	-	chr8_1:77897970-77897989	None:intergenic	30.0%
CTGTCAAATAGTGACTATAA+CGG	-	chr8_1:77898076-77898095	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	77896386	77904067	77896386	ID=Msa1216270;Name=Msa1216270
chr8_1	mRNA	77896386	77904067	77896386	ID=Msa1216270-mRNA-1;Parent=Msa1216270;Name=Msa1216270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=447\|0.87\|0.77\|1\|0.75\|0.77\|9\|839\|606
chr8_1	exon	77896386	77896856	77896386	ID=Msa1216270-mRNA-1:exon:26912;Parent=Msa1216270-mRNA-1
chr8_1	exon	77898360	77898768	77898360	ID=Msa1216270-mRNA-1:exon:26913;Parent=Msa1216270-mRNA-1
chr8_1	exon	77898917	77899044	77898917	ID=Msa1216270-mRNA-1:exon:26914;Parent=Msa1216270-mRNA-1
chr8_1	exon	77899132	77899191	77899132	ID=Msa1216270-mRNA-1:exon:26915;Parent=Msa1216270-mRNA-1
chr8_1	exon	77899362	77899511	77899362	ID=Msa1216270-mRNA-1:exon:26916;Parent=Msa1216270-mRNA-1
chr8_1	exon	77899588	77900033	77899588	ID=Msa1216270-mRNA-1:exon:26917;Parent=Msa1216270-mRNA-1
chr8_1	exon	77900457	77900609	77900457	ID=Msa1216270-mRNA-1:exon:26918;Parent=Msa1216270-mRNA-1
chr8_1	exon	77900741	77900922	77900741	ID=Msa1216270-mRNA-1:exon:26919;Parent=Msa1216270-mRNA-1
chr8_1	exon	77902960	77904067	77902960	ID=Msa1216270-mRNA-1:exon:26920;Parent=Msa1216270-mRNA-1
chr8_1	five_prime_UTR	77896386	77896832	77896386	ID=Msa1216270-mRNA-1:five_prime_utr;Parent=Msa1216270-mRNA-1
chr8_1	CDS	77896833	77896856	77896833	ID=Msa1216270-mRNA-1:cds;Parent=Msa1216270-mRNA-1
chr8_1	CDS	77898360	77898768	77898360	ID=Msa1216270-mRNA-1:cds;Parent=Msa1216270-mRNA-1
chr8_1	CDS	77898917	77899044	77898917	ID=Msa1216270-mRNA-1:cds;Parent=Msa1216270-mRNA-1
chr8_1	CDS	77899132	77899191	77899132	ID=Msa1216270-mRNA-1:cds;Parent=Msa1216270-mRNA-1
chr8_1	CDS	77899362	77899511	77899362	ID=Msa1216270-mRNA-1:cds;Parent=Msa1216270-mRNA-1
chr8_1	CDS	77899588	77900033	77899588	ID=Msa1216270-mRNA-1:cds;Parent=Msa1216270-mRNA-1
chr8_1	CDS	77900457	77900609	77900457	ID=Msa1216270-mRNA-1:cds;Parent=Msa1216270-mRNA-1
chr8_1	CDS	77900741	77900922	77900741	ID=Msa1216270-mRNA-1:cds;Parent=Msa1216270-mRNA-1
chr8_1	CDS	77902960	77903228	77902960	ID=Msa1216270-mRNA-1:cds;Parent=Msa1216270-mRNA-1
chr8_1	three_prime_UTR	77903229	77904067	77903229	ID=Msa1216270-mRNA-1:three_prime_utr;Parent=Msa1216270-mRNA-1

Gene Sequence

>Msa1216270

ATGCCTCCTGATCAGAGAAAAAAGTCATCTATAGATGTAGACTTCTTTACAGAATATGGTGAAGGGAGTAGATACATGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTGGTTTGCTCTGCATATGATACACACACTGGAGAAAAGGTTGCAATAAAGAAAATTAATGACATATTTGAACATGTTTCTGATGCTACTCGCATTCTTCGTGAGATCAAGCTTCTTAGACTCCTCCGTCATCCTGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAACTTATGGAATCAGATTTACATCAAGTCATCAAAGCAAATGATGACTTGACTCGAGAACATTACCAATTTTTTCTCTATCAGCTTCTTCGAGGTTTAAAGTATATACACACAGCAAATGTTTTTCACCGTGATCTAAAGCCAAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGCGATTTTGGTCTTGCCAGAGTAGCTTTCAATGATACACCGACTGCAATATTCTGGACCGATTATATTGCAACAAGGTGGTATAGGGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACTCCGGCTATAGACATATGGAGCATTGGCTGCATTTTTGCGGAACTTTTAACTGGAAAACCTCTTTTCCCAGGGAAGAATGTTGTCCATCAATTAGACCTCATGACTGATTTCCTTGGAACACCATCTCCTGAAGCCATCGCTAGGATACGTAATGAGAAAGCTCGGAGATACTTGAGCACCATGCGTAAGAAGAAGCCAGTTCCTTTGTATCAAAAGTTTCCTAATGCAGACCCCCTTGCTCTTCGTGTGTTAGAAAGAATGCTGGCATTTGATCCTAAGGATCGACCTACTGCGGAAGAGGTTGATTTTCATCCATCTGCAGTGACTTTCCGCACATCATATTTGGTTTTAACAGCAAATGTTGTGGATTATTTTCAGGCTCTAGCAGATCCATATTTTAACGGCTTGGCCAAGTTTGAGAGAGAGCCTTGTGCTCAGGCAGTAAGCAAGATGGAATTTGAATTTGAGAGACGCAGGATAACAAAGGAAGACGTGCGAGAGCTTATATACAGAGAGACTCTGGAGTACCATCCAAAGATGTTAAAGGAATATCTAGAAGGAGCAGAGCCAACAGGATTCATGTATCCAAGTTCATTTTTTGATATCTTTCCTCTCTCCTTTTTCCTAACTCGTACGGATAGTGCTGTGGACCACTTCAAGAAGCAATTTGCATACCTTGAGGAGCATTATGGAAAAGGTGGTACTGTTAGTCCACTTGATAGGCAACATGCATCGTTACCCAGGCAGTGTGTGTTGTATTCAGACGACTCAAGACAGAATATGGCTGAGGTTGCAGCAGATGATCTCTCCAAGTGTTGCATTAAAGAAGTTGAGAAGCCGGTCATTGATAGGAGTGGTGGTGTTCCTATGAACAGGCTTCCTTTACAAGCTCCTCAAAATATTCAAGGTGTCATGACTAATCGAAGTGTTGCCCCACGGCCCAGAAAAGTTGCGGGTTCCCTATTGCATTACAATGGTGGGGTAGCAGGGGCTGACCAACGGAAGACAAATAGAAATCCATCTGTTCCAGCTCAGTATGCTGCTTCAAGCTACTCATATCCTAAAAGAAATCCAAGCTGTAAAAACGAGAGAGCAGAAGATGGAATTGAAGGTTCTAATGGACTTCAGTCGAAGCCTCAATACATAGCACGGAAAGTTGCTGCTGCTCCAGGTGGAGCTGGAAGTAACTGGTAG

Protein sequence

>Msa1216270

MPPDQRKKSSIDVDFFTEYGEGSRYMIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYIATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARIRNEKARRYLSTMRKKKPVPLYQKFPNADPLALRVLERMLAFDPKDRPTAEEVDFHPSAVTFRTSYLVLTANVVDYFQALADPYFNGLAKFEREPCAQAVSKMEFEFERRRITKEDVRELIYRETLEYHPKMLKEYLEGAEPTGFMYPSSFFDIFPLSFFLTRTDSAVDHFKKQFAYLEEHYGKGGTVSPLDRQHASLPRQCVLYSDDSRQNMAEVAADDLSKCCIKEVEKPVIDRSGGVPMNRLPLQAPQNIQGVMTNRSVAPRPRKVAGSLLHYNGGVAGADQRKTNRNPSVPAQYAASSYSYPKRNPSCKNERAEDGIEGSNGLQSKPQYIARKVAAAPGGAGSNW*