Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1223320 | sp|O49717|CDPKF_ARATH | 66.667 | 102 | 32 | 1 | 11 | 110 | 450 | 551 | 1.97e-43 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1223320 | G7JJ65 | 91.000 | 100 | 9 | 0 | 11 | 110 | 444 | 543 | 7.73e-57 | 193 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1223310 | Msa1223320 | 0.800249 | 1.574906e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1223320 | MtrunA17_Chr4g0074791 | 91.000 | 100 | 9 | 0 | 11 | 110 | 434 | 533 | 1.57e-60 | 193 |
| Msa1223320 | MtrunA17_Chr4g0074811 | 84.000 | 100 | 16 | 0 | 11 | 110 | 440 | 539 | 1.88e-56 | 182 |
| Msa1223320 | MtrunA17_Chr5g0444171 | 69.000 | 100 | 31 | 0 | 11 | 110 | 441 | 540 | 1.03e-44 | 151 |
| Msa1223320 | MtrunA17_Chr3g0098951 | 62.617 | 107 | 33 | 1 | 11 | 110 | 432 | 538 | 9.01e-39 | 135 |
| Msa1223320 | MtrunA17_Chr5g0397101 | 64.894 | 94 | 33 | 0 | 11 | 104 | 415 | 508 | 1.64e-37 | 132 |
| Msa1223320 | MtrunA17_Chr8g0387671 | 62.766 | 94 | 35 | 0 | 11 | 104 | 415 | 508 | 2.91e-36 | 128 |
| Msa1223320 | MtrunA17_Chr1g0157131 | 58.889 | 90 | 37 | 0 | 11 | 100 | 423 | 512 | 2.36e-32 | 118 |
| Msa1223320 | MtrunA17_Chr0c02g0489761 | 58.511 | 94 | 39 | 0 | 11 | 104 | 427 | 520 | 7.09e-31 | 114 |
| Msa1223320 | MtrunA17_Chr5g0441691 | 59.574 | 94 | 38 | 0 | 11 | 104 | 417 | 510 | 1.45e-30 | 113 |
| Msa1223320 | MtrunA17_Chr1g0170281 | 51.546 | 97 | 45 | 2 | 5 | 100 | 460 | 555 | 2.19e-27 | 104 |
| Msa1223320 | MtrunA17_Chr5g0448721 | 54.444 | 90 | 40 | 1 | 11 | 100 | 445 | 533 | 1.62e-26 | 102 |
| Msa1223320 | MtrunA17_Chr5g0441781 | 59.211 | 76 | 31 | 0 | 29 | 104 | 1 | 76 | 9.30e-26 | 92.0 |
| Msa1223320 | MtrunA17_Chr4g0059951 | 53.261 | 92 | 42 | 1 | 11 | 101 | 422 | 513 | 3.93e-25 | 98.2 |
| Msa1223320 | MtrunA17_Chr3g0131181 | 52.222 | 90 | 42 | 1 | 11 | 100 | 378 | 466 | 4.58e-25 | 97.8 |
| Msa1223320 | MtrunA17_Chr8g0385341 | 53.333 | 90 | 41 | 1 | 11 | 100 | 379 | 467 | 4.94e-25 | 97.8 |
| Msa1223320 | MtrunA17_Chr1g0176751 | 49.438 | 89 | 44 | 1 | 11 | 99 | 473 | 560 | 1.81e-23 | 93.6 |
| Msa1223320 | MtrunA17_Chr1g0200601 | 45.161 | 93 | 50 | 1 | 8 | 100 | 376 | 467 | 7.62e-23 | 91.7 |
| Msa1223320 | MtrunA17_Chr7g0242561 | 47.368 | 95 | 49 | 1 | 8 | 101 | 402 | 496 | 9.54e-23 | 91.3 |
| Msa1223320 | MtrunA17_Chr4g0033371 | 42.857 | 91 | 52 | 0 | 11 | 101 | 421 | 511 | 1.56e-21 | 87.8 |
| Msa1223320 | MtrunA17_Chr7g0267751 | 41.237 | 97 | 55 | 2 | 5 | 100 | 477 | 572 | 3.77e-21 | 87.0 |
| Msa1223320 | MtrunA17_Chr1g0173541 | 45.745 | 94 | 46 | 2 | 11 | 101 | 401 | 492 | 1.54e-18 | 79.3 |
| Msa1223320 | MtrunA17_Chr1g0176421 | 33.858 | 127 | 51 | 2 | 6 | 100 | 505 | 630 | 4.90e-18 | 78.2 |
| Msa1223320 | MtrunA17_Chr7g0257751 | 41.304 | 92 | 53 | 1 | 11 | 101 | 407 | 498 | 1.40e-16 | 73.9 |
| Msa1223320 | MtrunA17_Chr5g0440931 | 37.895 | 95 | 55 | 3 | 8 | 99 | 53 | 146 | 4.63e-16 | 68.9 |
| Msa1223320 | MtrunA17_Chr6g0460211 | 37.895 | 95 | 55 | 3 | 8 | 99 | 53 | 146 | 4.84e-16 | 68.9 |
| Msa1223320 | MtrunA17_Chr3g0093271 | 37.113 | 97 | 57 | 3 | 8 | 101 | 104 | 199 | 1.11e-15 | 69.3 |
| Msa1223320 | MtrunA17_Chr7g0254731 | 36.842 | 95 | 56 | 3 | 8 | 99 | 53 | 146 | 1.57e-15 | 67.8 |
| Msa1223320 | MtrunA17_Chr1g0166281 | 32.653 | 98 | 62 | 3 | 8 | 102 | 53 | 149 | 2.04e-15 | 67.4 |
| Msa1223320 | MtrunA17_Chr1g0188171 | 30.612 | 98 | 64 | 3 | 8 | 102 | 53 | 149 | 4.31e-13 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1223320 | AT4G21940.1 | 66.667 | 102 | 32 | 1 | 11 | 110 | 450 | 551 | 2.00e-44 | 151 |
| Msa1223320 | AT4G21940.2 | 66.667 | 102 | 32 | 1 | 11 | 110 | 450 | 551 | 2.46e-44 | 151 |
| Msa1223320 | AT4G04720.2 | 72.527 | 91 | 25 | 0 | 11 | 101 | 428 | 518 | 2.69e-43 | 148 |
| Msa1223320 | AT4G04720.1 | 72.527 | 91 | 25 | 0 | 11 | 101 | 428 | 518 | 2.69e-43 | 148 |
| Msa1223320 | AT1G50700.2 | 64.078 | 103 | 37 | 0 | 8 | 110 | 445 | 547 | 9.91e-41 | 141 |
| Msa1223320 | AT4G04710.3 | 64.000 | 100 | 35 | 1 | 11 | 109 | 367 | 466 | 1.75e-40 | 139 |
| Msa1223320 | AT4G04710.2 | 64.000 | 100 | 35 | 1 | 11 | 109 | 381 | 480 | 2.19e-40 | 139 |
| Msa1223320 | AT4G04710.1 | 64.000 | 100 | 35 | 1 | 11 | 109 | 394 | 493 | 2.45e-40 | 139 |
| Msa1223320 | AT3G20410.2 | 66.667 | 96 | 32 | 0 | 11 | 106 | 440 | 535 | 2.52e-40 | 140 |
| Msa1223320 | AT3G20410.1 | 66.667 | 96 | 32 | 0 | 11 | 106 | 440 | 535 | 2.52e-40 | 140 |
| Msa1223320 | AT4G04710.4 | 64.000 | 100 | 35 | 1 | 11 | 109 | 396 | 495 | 2.62e-40 | 139 |
| Msa1223320 | AT1G50700.1 | 64.000 | 100 | 36 | 0 | 11 | 110 | 422 | 521 | 6.31e-40 | 139 |
| Msa1223320 | AT4G04695.1 | 67.033 | 91 | 30 | 0 | 11 | 101 | 380 | 470 | 2.66e-38 | 134 |
| Msa1223320 | AT4G04740.4 | 66.667 | 93 | 31 | 0 | 8 | 100 | 414 | 506 | 3.82e-38 | 134 |
| Msa1223320 | AT4G04740.6 | 66.667 | 93 | 31 | 0 | 8 | 100 | 414 | 506 | 3.82e-38 | 134 |
| Msa1223320 | AT4G04740.5 | 66.667 | 93 | 31 | 0 | 8 | 100 | 414 | 506 | 3.82e-38 | 134 |
| Msa1223320 | AT4G04740.3 | 66.667 | 93 | 31 | 0 | 8 | 100 | 414 | 506 | 3.82e-38 | 134 |
| Msa1223320 | AT4G04740.1 | 66.667 | 93 | 31 | 0 | 8 | 100 | 414 | 506 | 3.82e-38 | 134 |
| Msa1223320 | AT4G04740.7 | 66.667 | 93 | 31 | 0 | 8 | 100 | 414 | 506 | 3.82e-38 | 134 |
| Msa1223320 | AT1G76040.1 | 56.122 | 98 | 43 | 0 | 11 | 108 | 222 | 319 | 3.70e-36 | 125 |
| Msa1223320 | AT1G76040.4 | 56.122 | 98 | 43 | 0 | 11 | 108 | 222 | 319 | 3.70e-36 | 125 |
| Msa1223320 | AT1G61950.1 | 61.538 | 91 | 35 | 0 | 11 | 101 | 448 | 538 | 2.49e-35 | 126 |
| Msa1223320 | AT4G04700.1 | 62.637 | 91 | 34 | 0 | 11 | 101 | 380 | 470 | 6.56e-35 | 125 |
| Msa1223320 | AT1G76040.2 | 56.122 | 98 | 43 | 0 | 11 | 108 | 460 | 557 | 1.47e-34 | 124 |
| Msa1223320 | AT4G23650.1 | 60.204 | 98 | 39 | 0 | 11 | 108 | 427 | 524 | 2.86e-34 | 123 |
| Msa1223320 | AT5G19360.1 | 58.879 | 107 | 40 | 1 | 6 | 108 | 408 | 514 | 4.40e-34 | 123 |
| Msa1223320 | AT5G12180.1 | 57.944 | 107 | 41 | 1 | 6 | 108 | 413 | 519 | 5.80e-33 | 120 |
| Msa1223320 | AT4G04740.2 | 63.291 | 79 | 29 | 0 | 8 | 86 | 414 | 492 | 4.86e-29 | 109 |
| Msa1223320 | AT2G17290.1 | 54.444 | 90 | 40 | 1 | 11 | 100 | 434 | 522 | 3.21e-27 | 104 |
| Msa1223320 | AT2G17290.2 | 54.444 | 90 | 40 | 1 | 11 | 100 | 434 | 522 | 3.21e-27 | 104 |
| Msa1223320 | AT4G38230.1 | 53.333 | 90 | 41 | 1 | 11 | 100 | 229 | 317 | 1.34e-26 | 100 |
| Msa1223320 | AT5G04870.1 | 49.495 | 99 | 49 | 1 | 11 | 109 | 499 | 596 | 4.39e-26 | 101 |
| Msa1223320 | AT4G38230.2 | 53.333 | 90 | 41 | 1 | 11 | 100 | 403 | 491 | 7.02e-26 | 100 |
| Msa1223320 | AT4G38230.4 | 53.333 | 90 | 41 | 1 | 11 | 100 | 373 | 461 | 7.16e-26 | 100 |
| Msa1223320 | AT4G38230.3 | 53.333 | 90 | 41 | 1 | 11 | 100 | 373 | 461 | 7.16e-26 | 100 |
| Msa1223320 | AT4G35310.2 | 53.333 | 90 | 41 | 1 | 11 | 100 | 446 | 534 | 2.01e-25 | 99.4 |
| Msa1223320 | AT4G35310.1 | 53.333 | 90 | 41 | 1 | 11 | 100 | 446 | 534 | 2.01e-25 | 99.4 |
| Msa1223320 | AT3G10660.2 | 49.495 | 99 | 49 | 1 | 11 | 109 | 535 | 632 | 2.47e-25 | 99.4 |
| Msa1223320 | AT3G10660.1 | 49.495 | 99 | 49 | 1 | 11 | 109 | 535 | 632 | 2.47e-25 | 99.4 |
| Msa1223320 | AT1G35670.1 | 48.889 | 90 | 45 | 1 | 11 | 100 | 375 | 463 | 3.88e-25 | 98.2 |
| Msa1223320 | AT5G23580.1 | 51.111 | 90 | 43 | 1 | 11 | 100 | 371 | 459 | 1.87e-24 | 96.3 |
| Msa1223320 | AT4G09570.1 | 47.778 | 90 | 46 | 1 | 11 | 100 | 374 | 462 | 7.01e-24 | 94.7 |
| Msa1223320 | AT2G38910.1 | 47.778 | 90 | 46 | 1 | 11 | 100 | 483 | 571 | 1.86e-23 | 94.0 |
| Msa1223320 | AT1G74740.1 | 51.087 | 92 | 44 | 1 | 11 | 101 | 408 | 499 | 2.55e-23 | 93.6 |
| Msa1223320 | AT3G51850.1 | 45.263 | 95 | 51 | 1 | 8 | 101 | 400 | 494 | 4.85e-21 | 87.0 |
| Msa1223320 | AT5G12480.2 | 43.478 | 92 | 50 | 1 | 12 | 101 | 315 | 406 | 1.36e-19 | 82.8 |
| Msa1223320 | AT5G12480.1 | 43.011 | 93 | 51 | 1 | 11 | 101 | 408 | 500 | 2.09e-19 | 82.4 |
| Msa1223320 | AT1G18890.1 | 45.652 | 92 | 49 | 1 | 11 | 101 | 412 | 503 | 3.58e-19 | 81.6 |
| Msa1223320 | AT5G19450.2 | 44.681 | 94 | 47 | 2 | 11 | 101 | 407 | 498 | 1.02e-18 | 80.5 |
| Msa1223320 | AT5G19450.1 | 44.681 | 94 | 47 | 2 | 11 | 101 | 407 | 498 | 1.02e-18 | 80.5 |
| Msa1223320 | AT4G21940.3 | 76.744 | 43 | 10 | 0 | 11 | 53 | 450 | 492 | 1.80e-18 | 79.7 |
| Msa1223320 | AT3G57530.1 | 40.659 | 91 | 54 | 0 | 11 | 101 | 412 | 502 | 3.36e-17 | 75.9 |
| Msa1223320 | AT2G41860.2 | 42.391 | 92 | 52 | 1 | 11 | 101 | 403 | 494 | 1.11e-16 | 74.7 |
| Msa1223320 | AT2G41860.1 | 42.391 | 92 | 52 | 1 | 11 | 101 | 403 | 494 | 1.12e-16 | 74.3 |
| Msa1223320 | AT1G66410.4 | 37.895 | 95 | 55 | 3 | 8 | 99 | 17 | 110 | 1.55e-16 | 69.7 |
| Msa1223320 | AT1G66410.3 | 37.895 | 95 | 55 | 3 | 8 | 99 | 17 | 110 | 1.55e-16 | 69.7 |
| Msa1223320 | AT5G37780.4 | 37.113 | 97 | 57 | 3 | 8 | 101 | 40 | 135 | 2.11e-16 | 70.1 |
| Msa1223320 | AT3G43810.4 | 37.895 | 95 | 55 | 3 | 8 | 99 | 17 | 110 | 2.49e-16 | 69.3 |
| Msa1223320 | AT3G43810.3 | 37.895 | 95 | 55 | 3 | 8 | 99 | 17 | 110 | 2.49e-16 | 69.3 |
| Msa1223320 | AT1G66410.1 | 37.895 | 95 | 55 | 3 | 8 | 99 | 53 | 146 | 3.82e-16 | 69.7 |
| Msa1223320 | AT5G37780.1 | 37.895 | 95 | 55 | 3 | 8 | 99 | 53 | 146 | 3.82e-16 | 69.7 |
| Msa1223320 | AT5G37780.2 | 37.113 | 97 | 57 | 3 | 8 | 101 | 68 | 163 | 4.23e-16 | 70.1 |
| Msa1223320 | AT1G66410.2 | 37.113 | 97 | 57 | 3 | 8 | 101 | 63 | 158 | 4.44e-16 | 69.7 |
| Msa1223320 | AT2G41110.2 | 37.113 | 97 | 57 | 3 | 8 | 101 | 65 | 160 | 4.83e-16 | 69.7 |
| Msa1223320 | AT3G56800.1 | 37.895 | 95 | 55 | 3 | 8 | 99 | 53 | 146 | 5.27e-16 | 69.3 |
| Msa1223320 | AT2G41110.1 | 37.895 | 95 | 55 | 3 | 8 | 99 | 53 | 146 | 5.27e-16 | 69.3 |
| Msa1223320 | AT2G27030.1 | 37.895 | 95 | 55 | 3 | 8 | 99 | 53 | 146 | 5.27e-16 | 69.3 |
| Msa1223320 | AT3G43810.1 | 37.895 | 95 | 55 | 3 | 8 | 99 | 53 | 146 | 6.68e-16 | 68.9 |
| Msa1223320 | AT2G31500.1 | 40.000 | 95 | 53 | 1 | 11 | 101 | 415 | 509 | 6.98e-16 | 72.4 |
| Msa1223320 | AT5G37780.3 | 37.895 | 95 | 55 | 3 | 8 | 99 | 79 | 172 | 7.10e-16 | 69.7 |
| Msa1223320 | AT5G21274.1 | 37.895 | 95 | 55 | 3 | 8 | 99 | 53 | 146 | 1.27e-15 | 68.2 |
| Msa1223320 | AT2G27030.3 | 37.895 | 95 | 55 | 3 | 8 | 99 | 53 | 146 | 1.66e-15 | 68.6 |
| Msa1223320 | AT3G43810.2 | 37.895 | 95 | 55 | 3 | 8 | 99 | 53 | 146 | 2.79e-15 | 68.9 |
| Msa1223320 | AT1G50700.3 | 68.182 | 44 | 14 | 0 | 11 | 54 | 422 | 465 | 3.93e-15 | 70.1 |
| Msa1223320 | AT1G76040.3 | 60.000 | 45 | 18 | 0 | 11 | 55 | 460 | 504 | 1.21e-14 | 68.6 |
| Msa1223320 | AT3G22930.1 | 33.684 | 95 | 59 | 3 | 8 | 99 | 76 | 169 | 1.29e-13 | 63.5 |
| Msa1223320 | AT3G51850.2 | 41.772 | 79 | 45 | 1 | 8 | 85 | 400 | 478 | 7.29e-13 | 63.5 |
| Msa1223320 | AT4G14640.2 | 30.612 | 98 | 64 | 3 | 8 | 102 | 36 | 132 | 9.31e-13 | 60.5 |
| Msa1223320 | AT4G14640.1 | 30.612 | 98 | 64 | 3 | 8 | 102 | 54 | 150 | 2.45e-12 | 59.7 |
| Msa1223320 | AT3G59440.1 | 34.021 | 97 | 61 | 1 | 8 | 101 | 92 | 188 | 6.25e-12 | 59.7 |
| Msa1223320 | AT2G41100.2 | 31.897 | 116 | 58 | 4 | 8 | 103 | 17 | 131 | 7.36e-11 | 56.6 |
Find 21 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATATTCTCAAGGCATTT+CGG | 0.355438 | 8_1:+87768953 | Msa1223320:CDS |
| GCATATTACTAGAGAGGAAT+TGG | 0.363612 | 8_1:+87769418 | Msa1223320:CDS |
| GTTTCTCAGGCCGATGTTGA+TGG | 0.386351 | 8_1:+87768862 | Msa1223320:CDS |
| ATTCAGTAGATTTAAAATAC+TGG | 0.409433 | 8_1:-87769658 | None:intergenic |
| CAGGCCGATGTTGATGGAAA+AGG | 0.416594 | 8_1:+87768868 | Msa1223320:CDS |
| TGACTATCTTGAATTCATAT+CGG | 0.417280 | 8_1:+87768897 | Msa1223320:CDS |
| TGGTGTGTATAACGTTTCTC+AGG | 0.486778 | 8_1:+87768849 | Msa1223320:CDS |
| CGGCTGCAATGCATAGGTAC+AGG | 0.508532 | 8_1:+87768917 | Msa1223320:CDS |
| AGGCCGATGTTGATGGAAAA+GGG | 0.519066 | 8_1:+87768869 | Msa1223320:CDS |
| AATAAAGGAAATAGTTTCTG+AGG | 0.544625 | 8_1:+87769481 | Msa1223320:CDS |
| GAGACTGCATTGACAAAGCA+TGG | 0.555694 | 8_1:+87769440 | Msa1223320:CDS |
| GGATGGGAAAATAAACTATG+AGG | 0.576086 | 8_1:+87769594 | Msa1223320:intron |
| AGATTTAAAATACTGGTCCC+TGG | 0.583132 | 8_1:-87769651 | None:intergenic |
| TCATATCGGCTGCAATGCAT+AGG | 0.592481 | 8_1:+87768911 | Msa1223320:CDS |
| TAAAATACTGGTCCCTGGTG+TGG | 0.592873 | 8_1:-87769646 | None:intergenic |
| GAGAAGTGTAATGCCACACC+AGG | 0.597205 | 8_1:+87769633 | Msa1223320:CDS |
| GCGAGATGAACATATTCTCA+AGG | 0.633684 | 8_1:+87768945 | Msa1223320:CDS |
| GGACAGGCATATTACTAGAG+AGG | 0.651658 | 8_1:+87769412 | Msa1223320:intron |
| ACTTAACACAAACTGTGTTG+TGG | 0.664187 | 8_1:+87768829 | None:intergenic |
| AAAGCATGGAATAGTTGACG+AGG | 0.717011 | 8_1:+87769454 | Msa1223320:CDS |
| AGAAGTGTAATGCCACACCA+GGG | 0.751648 | 8_1:+87769634 | Msa1223320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAATGGTTTTGTTA+TGG | - | chr8_1:87769195-87769214 | None:intergenic | 15.0% |
| !!! | AAAAAAAAATGGTTTTGTTA+TGG | - | chr8_1:87769195-87769214 | None:intergenic | 15.0% |
| !!! | TGTTACTATCATATACTTTT+CGG | - | chr8_1:87769097-87769116 | None:intergenic | 20.0% |
| !! | ATATCATTTCTGTATTAAAC+TGG | + | chr8_1:87769250-87769269 | Msa1223320:intron | 20.0% |
| !! | TTACAGAGTTAATTAAACAA+TGG | + | chr8_1:87769328-87769347 | Msa1223320:intron | 20.0% |
| !!! | TAGATTTTCCTGATTAATAT+AGG | - | chr8_1:87769531-87769550 | None:intergenic | 20.0% |
| !! | TTAATCAGGAAAATCTATTA+CGG | + | chr8_1:87769534-87769553 | Msa1223320:intron | 20.0% |
| !!! | TGTTACTATCATATACTTTT+CGG | - | chr8_1:87769097-87769116 | None:intergenic | 20.0% |
| !! | ATATCATTTCTGTATTAAAC+TGG | + | chr8_1:87769250-87769269 | Msa1223320:intron | 20.0% |
| !! | TTACAGAGTTAATTAAACAA+TGG | + | chr8_1:87769328-87769347 | Msa1223320:intron | 20.0% |
| !!! | TAGATTTTCCTGATTAATAT+AGG | - | chr8_1:87769531-87769550 | None:intergenic | 20.0% |
| !! | TTAATCAGGAAAATCTATTA+CGG | + | chr8_1:87769534-87769553 | Msa1223320:intron | 20.0% |
| ! | TGACTATCTTGAATTCATAT+CGG | + | chr8_1:87768897-87768916 | Msa1223320:CDS | 25.0% |
| !!! | TATTTTGATAAAGACAGTAG+TGG | + | chr8_1:87768976-87768995 | Msa1223320:CDS | 25.0% |
| !!! | ATTTTGATAAAGACAGTAGT+GGG | + | chr8_1:87768977-87768996 | Msa1223320:CDS | 25.0% |
| ! | ACTACTAGATAGTATATGAT+TGG | + | chr8_1:87769059-87769078 | Msa1223320:intron | 25.0% |
| !! | GTTACTATCATATACTTTTC+GGG | - | chr8_1:87769096-87769115 | None:intergenic | 25.0% |
| !!! | ACAAATGGTTTGGATTTTTT+CGG | - | chr8_1:87769160-87769179 | None:intergenic | 25.0% |
| ! | TTGTCAAAATACAAATGGTT+TGG | - | chr8_1:87769170-87769189 | None:intergenic | 25.0% |
| ! | TGGATTTGTCAAAATACAAA+TGG | - | chr8_1:87769175-87769194 | None:intergenic | 25.0% |
| ! | AAGGGGAAAGAAAAAAAAAA+TGG | - | chr8_1:87769206-87769225 | None:intergenic | 25.0% |
| !!! | AAACTGGATTAGTTTACTTT+AGG | + | chr8_1:87769266-87769285 | Msa1223320:intron | 25.0% |
| !!! | AACTGGATTAGTTTACTTTA+GGG | + | chr8_1:87769267-87769286 | Msa1223320:intron | 25.0% |
| ! | TTTATATATTCCTAACCTCA+GGG | + | chr8_1:87769290-87769309 | Msa1223320:intron | 25.0% |
| ! | AATAAAGGAAATAGTTTCTG+AGG | + | chr8_1:87769481-87769500 | Msa1223320:CDS | 25.0% |
| ! | AAGTTACTCCTATATTAATC+AGG | + | chr8_1:87769520-87769539 | Msa1223320:intron | 25.0% |
| ! | TAATCAGGAAAATCTATTAC+GGG | + | chr8_1:87769535-87769554 | Msa1223320:intron | 25.0% |
| ! | TGACTATCTTGAATTCATAT+CGG | + | chr8_1:87768897-87768916 | Msa1223320:CDS | 25.0% |
| !!! | TATTTTGATAAAGACAGTAG+TGG | + | chr8_1:87768976-87768995 | Msa1223320:CDS | 25.0% |
| !!! | ATTTTGATAAAGACAGTAGT+GGG | + | chr8_1:87768977-87768996 | Msa1223320:CDS | 25.0% |
| ! | ACTACTAGATAGTATATGAT+TGG | + | chr8_1:87769059-87769078 | Msa1223320:intron | 25.0% |
| !! | GTTACTATCATATACTTTTC+GGG | - | chr8_1:87769096-87769115 | None:intergenic | 25.0% |
| !!! | ACAAATGGTTTGGATTTTTT+CGG | - | chr8_1:87769160-87769179 | None:intergenic | 25.0% |
| ! | TTGTCAAAATACAAATGGTT+TGG | - | chr8_1:87769170-87769189 | None:intergenic | 25.0% |
| ! | TGGATTTGTCAAAATACAAA+TGG | - | chr8_1:87769175-87769194 | None:intergenic | 25.0% |
| ! | AAGGGGAAAGAAAAAAAAAA+TGG | - | chr8_1:87769206-87769225 | None:intergenic | 25.0% |
| !!! | AAACTGGATTAGTTTACTTT+AGG | + | chr8_1:87769266-87769285 | Msa1223320:intron | 25.0% |
| !!! | AACTGGATTAGTTTACTTTA+GGG | + | chr8_1:87769267-87769286 | Msa1223320:intron | 25.0% |
| ! | TTTATATATTCCTAACCTCA+GGG | + | chr8_1:87769290-87769309 | Msa1223320:intron | 25.0% |
| ! | AATAAAGGAAATAGTTTCTG+AGG | + | chr8_1:87769481-87769500 | Msa1223320:CDS | 25.0% |
| ! | AAGTTACTCCTATATTAATC+AGG | + | chr8_1:87769520-87769539 | Msa1223320:intron | 25.0% |
| ! | TAATCAGGAAAATCTATTAC+GGG | + | chr8_1:87769535-87769554 | Msa1223320:intron | 25.0% |
| ! | AACATATTCTCAAGGCATTT+CGG | + | chr8_1:87768953-87768972 | Msa1223320:CDS | 30.0% |
| !! | CAAATGGTTTGGATCTTTTT+CGG | - | chr8_1:87769032-87769051 | None:intergenic | 30.0% |
| TAGTTCAAACACAAATGGTT+TGG | - | chr8_1:87769043-87769062 | None:intergenic | 30.0% | |
| TCTAGTAGTTCAAACACAAA+TGG | - | chr8_1:87769048-87769067 | None:intergenic | 30.0% | |
| !!! | CAAATGGTTTGGATTTTTTC+GGG | - | chr8_1:87769159-87769178 | None:intergenic | 30.0% |
| GTTTATATATTCCTAACCTC+AGG | + | chr8_1:87769289-87769308 | Msa1223320:intron | 30.0% | |
| TTATATATTCCTAACCTCAG+GGG | + | chr8_1:87769291-87769310 | Msa1223320:intron | 30.0% | |
| ! | CATTTGCTTCTTTGATTTCA+CGG | + | chr8_1:87769391-87769410 | Msa1223320:intron | 30.0% |
| CTGATGATTCTTAAACTAAC+AGG | + | chr8_1:87769573-87769592 | Msa1223320:intron | 30.0% | |
| TGATTCTTAAACTAACAGGA+TGG | + | chr8_1:87769577-87769596 | Msa1223320:intron | 30.0% | |
| GATTCTTAAACTAACAGGAT+GGG | + | chr8_1:87769578-87769597 | Msa1223320:intron | 30.0% | |
| ! | AACATATTCTCAAGGCATTT+CGG | + | chr8_1:87768953-87768972 | Msa1223320:CDS | 30.0% |
| !! | CAAATGGTTTGGATCTTTTT+CGG | - | chr8_1:87769032-87769051 | None:intergenic | 30.0% |
| TAGTTCAAACACAAATGGTT+TGG | - | chr8_1:87769043-87769062 | None:intergenic | 30.0% | |
| TCTAGTAGTTCAAACACAAA+TGG | - | chr8_1:87769048-87769067 | None:intergenic | 30.0% | |
| !!! | CAAATGGTTTGGATTTTTTC+GGG | - | chr8_1:87769159-87769178 | None:intergenic | 30.0% |
| GTTTATATATTCCTAACCTC+AGG | + | chr8_1:87769289-87769308 | Msa1223320:intron | 30.0% | |
| TTATATATTCCTAACCTCAG+GGG | + | chr8_1:87769291-87769310 | Msa1223320:intron | 30.0% | |
| ! | CATTTGCTTCTTTGATTTCA+CGG | + | chr8_1:87769391-87769410 | Msa1223320:intron | 30.0% |
| CTGATGATTCTTAAACTAAC+AGG | + | chr8_1:87769573-87769592 | Msa1223320:intron | 30.0% | |
| TGATTCTTAAACTAACAGGA+TGG | + | chr8_1:87769577-87769596 | Msa1223320:intron | 30.0% | |
| GATTCTTAAACTAACAGGAT+GGG | + | chr8_1:87769578-87769597 | Msa1223320:intron | 30.0% | |
| ! | TTTTTCTTTCCCCTTCTCTA+TGG | + | chr8_1:87769211-87769230 | Msa1223320:intron | 35.0% |
| ATATACTCTCCATAGAGAAG+GGG | - | chr8_1:87769223-87769242 | None:intergenic | 35.0% | |
| CATATACTCTCCATAGAGAA+GGG | - | chr8_1:87769224-87769243 | None:intergenic | 35.0% | |
| TCATATACTCTCCATAGAGA+AGG | - | chr8_1:87769225-87769244 | None:intergenic | 35.0% | |
| CGTGAAATCAAAGAAGCAAA+TGG | - | chr8_1:87769393-87769412 | None:intergenic | 35.0% | |
| GCATATTACTAGAGAGGAAT+TGG | + | chr8_1:87769418-87769437 | Msa1223320:CDS | 35.0% | |
| AGTTGACGAGGCAAAAATAA+AGG | + | chr8_1:87769466-87769485 | Msa1223320:CDS | 35.0% | |
| GGATGGGAAAATAAACTATG+AGG | + | chr8_1:87769594-87769613 | Msa1223320:intron | 35.0% | |
| ! | TTTTTCTTTCCCCTTCTCTA+TGG | + | chr8_1:87769211-87769230 | Msa1223320:intron | 35.0% |
| ATATACTCTCCATAGAGAAG+GGG | - | chr8_1:87769223-87769242 | None:intergenic | 35.0% | |
| CATATACTCTCCATAGAGAA+GGG | - | chr8_1:87769224-87769243 | None:intergenic | 35.0% | |
| TCATATACTCTCCATAGAGA+AGG | - | chr8_1:87769225-87769244 | None:intergenic | 35.0% | |
| CGTGAAATCAAAGAAGCAAA+TGG | - | chr8_1:87769393-87769412 | None:intergenic | 35.0% | |
| GCATATTACTAGAGAGGAAT+TGG | + | chr8_1:87769418-87769437 | Msa1223320:CDS | 35.0% | |
| AGTTGACGAGGCAAAAATAA+AGG | + | chr8_1:87769466-87769485 | Msa1223320:CDS | 35.0% | |
| GGATGGGAAAATAAACTATG+AGG | + | chr8_1:87769594-87769613 | Msa1223320:intron | 35.0% | |
| TGGTGTGTATAACGTTTCTC+AGG | + | chr8_1:87768849-87768868 | Msa1223320:CDS | 40.0% | |
| GCGAGATGAACATATTCTCA+AGG | + | chr8_1:87768945-87768964 | Msa1223320:CDS | 40.0% | |
| CATTTCTTTCCCCTTCTCTA+TGG | + | chr8_1:87769115-87769134 | Msa1223320:intron | 40.0% | |
| TACCAATCTCCATAGAGAAG+GGG | - | chr8_1:87769127-87769146 | None:intergenic | 40.0% | |
| GTACCAATCTCCATAGAGAA+GGG | - | chr8_1:87769128-87769147 | None:intergenic | 40.0% | |
| AGTACCAATCTCCATAGAGA+AGG | - | chr8_1:87769129-87769148 | None:intergenic | 40.0% | |
| AAAGCATGGAATAGTTGACG+AGG | + | chr8_1:87769454-87769473 | Msa1223320:CDS | 40.0% | |
| TGGTGTGTATAACGTTTCTC+AGG | + | chr8_1:87768849-87768868 | Msa1223320:CDS | 40.0% | |
| GCGAGATGAACATATTCTCA+AGG | + | chr8_1:87768945-87768964 | Msa1223320:CDS | 40.0% | |
| CATTTCTTTCCCCTTCTCTA+TGG | + | chr8_1:87769115-87769134 | Msa1223320:intron | 40.0% | |
| TACCAATCTCCATAGAGAAG+GGG | - | chr8_1:87769127-87769146 | None:intergenic | 40.0% | |
| GTACCAATCTCCATAGAGAA+GGG | - | chr8_1:87769128-87769147 | None:intergenic | 40.0% | |
| AGTACCAATCTCCATAGAGA+AGG | - | chr8_1:87769129-87769148 | None:intergenic | 40.0% | |
| AAAGCATGGAATAGTTGACG+AGG | + | chr8_1:87769454-87769473 | Msa1223320:CDS | 40.0% | |
| ! | AGGCCGATGTTGATGGAAAA+GGG | + | chr8_1:87768869-87768888 | Msa1223320:CDS | 45.0% |
| ! | CGACCCTTTTCCATCAACAT+CGG | - | chr8_1:87768875-87768894 | None:intergenic | 45.0% |
| ! | TCATATCGGCTGCAATGCAT+AGG | + | chr8_1:87768911-87768930 | Msa1223320:CDS | 45.0% |
| ! | GTGGGTGAGTATTGCAAGAT+TGG | + | chr8_1:87768995-87769014 | Msa1223320:intron | 45.0% |
| TTCCCCTTCTCTATGGAGAT+TGG | + | chr8_1:87769122-87769141 | Msa1223320:intron | 45.0% | |
| ATCATCCAAGTATTCCCCTG+AGG | - | chr8_1:87769308-87769327 | None:intergenic | 45.0% | |
| ! | GCTTCTTTGATTTCACGGAC+AGG | + | chr8_1:87769396-87769415 | Msa1223320:intron | 45.0% |
| GGACAGGCATATTACTAGAG+AGG | + | chr8_1:87769412-87769431 | Msa1223320:intron | 45.0% | |
| ! | GAGACTGCATTGACAAAGCA+TGG | + | chr8_1:87769440-87769459 | Msa1223320:CDS | 45.0% |
| ! | AGAAGTGTAATGCCACACCA+GGG | + | chr8_1:87769634-87769653 | Msa1223320:CDS | 45.0% |
| TAAAATACTGGTCCCTGGTG+TGG | - | chr8_1:87769649-87769668 | None:intergenic | 45.0% | |
| ! | AGGCCGATGTTGATGGAAAA+GGG | + | chr8_1:87768869-87768888 | Msa1223320:CDS | 45.0% |
| ! | CGACCCTTTTCCATCAACAT+CGG | - | chr8_1:87768875-87768894 | None:intergenic | 45.0% |
| ! | TCATATCGGCTGCAATGCAT+AGG | + | chr8_1:87768911-87768930 | Msa1223320:CDS | 45.0% |
| ! | GTGGGTGAGTATTGCAAGAT+TGG | + | chr8_1:87768995-87769014 | Msa1223320:intron | 45.0% |
| TTCCCCTTCTCTATGGAGAT+TGG | + | chr8_1:87769122-87769141 | Msa1223320:intron | 45.0% | |
| ATCATCCAAGTATTCCCCTG+AGG | - | chr8_1:87769308-87769327 | None:intergenic | 45.0% | |
| ! | GCTTCTTTGATTTCACGGAC+AGG | + | chr8_1:87769396-87769415 | Msa1223320:intron | 45.0% |
| GGACAGGCATATTACTAGAG+AGG | + | chr8_1:87769412-87769431 | Msa1223320:intron | 45.0% | |
| ! | GAGACTGCATTGACAAAGCA+TGG | + | chr8_1:87769440-87769459 | Msa1223320:CDS | 45.0% |
| ! | AGAAGTGTAATGCCACACCA+GGG | + | chr8_1:87769634-87769653 | Msa1223320:CDS | 45.0% |
| TAAAATACTGGTCCCTGGTG+TGG | - | chr8_1:87769649-87769668 | None:intergenic | 45.0% | |
| !! | TTGTTAAAAATATTAAATTA+TGG | + | chr8_1:87769357-87769376 | Msa1223320:intron | 5.0% |
| !! | TTGTTAAAAATATTAAATTA+TGG | + | chr8_1:87769357-87769376 | Msa1223320:intron | 5.0% |
| GTTTCTCAGGCCGATGTTGA+TGG | + | chr8_1:87768862-87768881 | Msa1223320:CDS | 50.0% | |
| ! | CAGGCCGATGTTGATGGAAA+AGG | + | chr8_1:87768868-87768887 | Msa1223320:CDS | 50.0% |
| CCAAGTATTCCCCTGAGGTT+AGG | - | chr8_1:87769303-87769322 | None:intergenic | 50.0% | |
| CCTAACCTCAGGGGAATACT+TGG | + | chr8_1:87769300-87769319 | Msa1223320:intron | 50.0% | |
| ! | GAGAAGTGTAATGCCACACC+AGG | + | chr8_1:87769633-87769652 | Msa1223320:CDS | 50.0% |
| GTTTCTCAGGCCGATGTTGA+TGG | + | chr8_1:87768862-87768881 | Msa1223320:CDS | 50.0% | |
| ! | CAGGCCGATGTTGATGGAAA+AGG | + | chr8_1:87768868-87768887 | Msa1223320:CDS | 50.0% |
| CCAAGTATTCCCCTGAGGTT+AGG | - | chr8_1:87769303-87769322 | None:intergenic | 50.0% | |
| CCTAACCTCAGGGGAATACT+TGG | + | chr8_1:87769300-87769319 | Msa1223320:intron | 50.0% | |
| ! | GAGAAGTGTAATGCCACACC+AGG | + | chr8_1:87769633-87769652 | Msa1223320:CDS | 50.0% |
| CGGCTGCAATGCATAGGTAC+AGG | + | chr8_1:87768917-87768936 | Msa1223320:CDS | 55.0% | |
| CGGCTGCAATGCATAGGTAC+AGG | + | chr8_1:87768917-87768936 | Msa1223320:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 87768841 | 87769669 | 87768841 | ID=Msa1223320;Name=Msa1223320 |
| chr8_1 | mRNA | 87768841 | 87769669 | 87768841 | ID=Msa1223320-mRNA-1;Parent=Msa1223320;Name=Msa1223320-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|1|0.33|1|1|1|3|0|110 |
| chr8_1 | exon | 87768841 | 87768998 | 87768841 | ID=Msa1223320-mRNA-1:exon:31836;Parent=Msa1223320-mRNA-1 |
| chr8_1 | exon | 87769418 | 87769517 | 87769418 | ID=Msa1223320-mRNA-1:exon:31837;Parent=Msa1223320-mRNA-1 |
| chr8_1 | exon | 87769595 | 87769669 | 87769595 | ID=Msa1223320-mRNA-1:exon:31838;Parent=Msa1223320-mRNA-1 |
| chr8_1 | CDS | 87768841 | 87768998 | 87768841 | ID=Msa1223320-mRNA-1:cds;Parent=Msa1223320-mRNA-1 |
| chr8_1 | CDS | 87769418 | 87769517 | 87769418 | ID=Msa1223320-mRNA-1:cds;Parent=Msa1223320-mRNA-1 |
| chr8_1 | CDS | 87769595 | 87769669 | 87769595 | ID=Msa1223320-mRNA-1:cds;Parent=Msa1223320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
