Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224900 | sp|P0C5E2|LRL12_ARATH | 32.530 | 249 | 153 | 6 | 10 | 250 | 1 | 242 | 5.02e-33 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224900 | G7IC72 | 85.441 | 261 | 35 | 2 | 1 | 260 | 1 | 259 | 1.93e-150 | 432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1224900 | Msa1224910 | 0.862004 | 6.885550e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224900 | MtrunA17_Chr1g0209361 | 85.441 | 261 | 35 | 2 | 1 | 260 | 1 | 259 | 4.62e-152 | 441 |
| Msa1224900 | MtrunA17_Chr7g0232441 | 70.290 | 276 | 77 | 3 | 1 | 274 | 1 | 273 | 1.07e-114 | 343 |
| Msa1224900 | MtrunA17_Chr1g0209481 | 80.282 | 142 | 28 | 0 | 133 | 274 | 1 | 142 | 8.37e-77 | 239 |
| Msa1224900 | MtrunA17_Chr6g0483801 | 35.065 | 231 | 127 | 10 | 39 | 257 | 34 | 253 | 1.61e-30 | 115 |
| Msa1224900 | MtrunA17_Chr6g0483911 | 29.528 | 254 | 147 | 11 | 13 | 248 | 1 | 240 | 1.31e-19 | 86.7 |
| Msa1224900 | MtrunA17_Chr6g0483851 | 25.200 | 250 | 170 | 8 | 22 | 257 | 23 | 269 | 3.23e-15 | 75.5 |
| Msa1224900 | MtrunA17_Chr6g0483921 | 24.895 | 237 | 155 | 9 | 38 | 257 | 35 | 265 | 1.49e-13 | 70.1 |
| Msa1224900 | MtrunA17_Chr6g0483791 | 21.687 | 249 | 178 | 7 | 17 | 251 | 13 | 258 | 2.96e-13 | 69.7 |
| Msa1224900 | MtrunA17_Chr1g0158761 | 27.572 | 243 | 140 | 11 | 41 | 255 | 27 | 261 | 1.31e-11 | 64.7 |
| Msa1224900 | MtrunA17_Chr1g0212811 | 27.397 | 219 | 135 | 9 | 53 | 257 | 45 | 253 | 4.02e-11 | 62.4 |
| Msa1224900 | MtrunA17_Chr8g0376061 | 28.462 | 260 | 147 | 16 | 31 | 268 | 18 | 260 | 4.13e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224900 | AT1G18390.2 | 32.530 | 249 | 153 | 6 | 10 | 250 | 1 | 242 | 5.47e-34 | 130 |
| Msa1224900 | AT5G38210.2 | 23.308 | 266 | 175 | 11 | 7 | 257 | 6 | 257 | 1.83e-14 | 73.9 |
| Msa1224900 | AT5G38210.3 | 23.293 | 249 | 166 | 10 | 24 | 257 | 1 | 239 | 2.91e-14 | 73.2 |
Find 67 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTGGTTCCCACATGTTT+TGG | 0.221120 | 8_1:-90026293 | None:intergenic |
| GGTCATGTATGAATAAATTA+AGG | 0.234748 | 8_1:-90026206 | None:intergenic |
| ATTCAGTATTAGAAAGATTA+AGG | 0.241520 | 8_1:-90026411 | None:intergenic |
| TATTGTGGCTACCCTGGTTT+TGG | 0.253149 | 8_1:+90026355 | Msa1224900:CDS |
| TGTGTTCCTTTGCAGCTCTC+TGG | 0.254124 | 8_1:-90026623 | None:intergenic |
| ATCTCTTGTGACAATAATAT+TGG | 0.258897 | 8_1:+90026379 | Msa1224900:CDS |
| TAATGGGAAAAGTGAGGTTT+TGG | 0.267345 | 8_1:-90026531 | None:intergenic |
| TACAAGGTTGAACATGTTAA+TGG | 0.294510 | 8_1:-90026548 | None:intergenic |
| AATCTCACTTCACTTTGATT+AGG | 0.334172 | 8_1:-90026571 | None:intergenic |
| GAAATGGGTTTAGGTTGAAT+TGG | 0.349490 | 8_1:+90026797 | Msa1224900:CDS |
| AGGGAGAAGAGAGGGGCTTC+AGG | 0.350945 | 8_1:-90026186 | None:intergenic |
| AGAAAGGGTAGCTTATACTT+TGG | 0.358326 | 8_1:-90026309 | None:intergenic |
| AGTCGCTGAGAAATGGGTTT+AGG | 0.377999 | 8_1:+90026788 | Msa1224900:CDS |
| ATTAATACGAGGGTGGAAAA+TGG | 0.389686 | 8_1:+90026745 | Msa1224900:CDS |
| ATTGAAGAGTCGCTGAGAAA+TGG | 0.389894 | 8_1:+90026781 | Msa1224900:CDS |
| CTTCACTTTGATTAGGTACA+AGG | 0.416478 | 8_1:-90026564 | None:intergenic |
| TGGAAAATGGTGTGAAAGGA+GGG | 0.426295 | 8_1:+90026758 | Msa1224900:CDS |
| CATTGGAAACTCTAAATGAA+TGG | 0.434239 | 8_1:-90026462 | None:intergenic |
| AAAACCAGGGTAGCCACAAT+AGG | 0.445349 | 8_1:-90026353 | None:intergenic |
| AGCTACCCTTTCTATATCAT+AGG | 0.447137 | 8_1:+90026319 | Msa1224900:CDS |
| GTGTTCCTTTGCAGCTCTCT+GGG | 0.450433 | 8_1:-90026622 | None:intergenic |
| ACAAGGTTGAACATGTTAAT+GGG | 0.455045 | 8_1:-90026547 | None:intergenic |
| GTCATGTATGAATAAATTAA+GGG | 0.457909 | 8_1:-90026205 | None:intergenic |
| TTGAAGAGTCGCTGAGAAAT+GGG | 0.459755 | 8_1:+90026782 | Msa1224900:CDS |
| TGCAATGACTGTAACAGAAC+TGG | 0.464318 | 8_1:+90026832 | Msa1224900:CDS |
| AGTTCGGTTGTGGCATTGTA+TGG | 0.468473 | 8_1:+90026673 | Msa1224900:CDS |
| CATTCTGCAATATGTGATAC+AGG | 0.470770 | 8_1:+90026916 | Msa1224900:CDS |
| AATAAATTAAGGGAGAAGAG+AGG | 0.480268 | 8_1:-90026195 | None:intergenic |
| CATTCCTATTGTGGCTACCC+TGG | 0.483028 | 8_1:+90026349 | Msa1224900:CDS |
| TGTAATCCTATGATATAGAA+AGG | 0.484493 | 8_1:-90026325 | None:intergenic |
| ACGGTGCGTATAGTGACAAT+AGG | 0.484991 | 8_1:+90027285 | Msa1224900:CDS |
| TGATCTTGAAAACACACCAT+TGG | 0.487472 | 8_1:-90026479 | None:intergenic |
| TGAAGAAAACAAAACGAGTT+CGG | 0.492555 | 8_1:+90026657 | Msa1224900:CDS |
| AAACAAAACGAGTTCGGTTG+TGG | 0.506019 | 8_1:+90026663 | Msa1224900:CDS |
| GAGCTGCAAAGGAACACAAT+TGG | 0.507728 | 8_1:+90026628 | Msa1224900:CDS |
| GTGGAAAATGGTGTGAAAGG+AGG | 0.513224 | 8_1:+90026757 | Msa1224900:CDS |
| TATAGAGCATAGAGTGGTTG+TGG | 0.515345 | 8_1:-90026245 | None:intergenic |
| GTATTAGAAAGATTAAGGAT+TGG | 0.518777 | 8_1:-90026406 | None:intergenic |
| ATAAATTAAGGGAGAAGAGA+GGG | 0.525684 | 8_1:-90026194 | None:intergenic |
| GGATTACAACATTCCTATTG+TGG | 0.530501 | 8_1:+90026340 | Msa1224900:CDS |
| AGTGAAGTGAGATTGTTCTT+CGG | 0.531178 | 8_1:+90026580 | Msa1224900:CDS |
| TGTCACTATACGCACCGTCT+TGG | 0.536565 | 8_1:-90027280 | None:intergenic |
| TGGTGAAAGACAACCTTTGT+TGG | 0.538090 | 8_1:-90026506 | None:intergenic |
| CAATTGCAGCTGCAGTCGCA+TGG | 0.547445 | 8_1:+90027253 | Msa1224900:intron |
| AGGGTGGAAAATGGTGTGAA+AGG | 0.557189 | 8_1:+90026754 | Msa1224900:CDS |
| TCAAGATCAAACACCAACAA+AGG | 0.561226 | 8_1:+90026493 | Msa1224900:CDS |
| AGCTACCCAGAGAGCTGCAA+AGG | 0.568594 | 8_1:+90026617 | Msa1224900:CDS |
| GTAATCCTATGATATAGAAA+GGG | 0.580788 | 8_1:-90026324 | None:intergenic |
| ACATGTTAATGGGAAAAGTG+AGG | 0.582384 | 8_1:-90026537 | None:intergenic |
| TAAATTAAGGGAGAAGAGAG+GGG | 0.600371 | 8_1:-90026193 | None:intergenic |
| GGGGCTTCAGGATAAACAAA+GGG | 0.602004 | 8_1:-90026174 | None:intergenic |
| TGAAGTGATTAATACGAGGG+TGG | 0.603795 | 8_1:+90026738 | Msa1224900:CDS |
| AACAGAACTGGAGGAAGGTG+TGG | 0.608178 | 8_1:+90026844 | Msa1224900:CDS |
| CATTCATTTAGAGTTTCCAA+TGG | 0.610699 | 8_1:+90026463 | Msa1224900:CDS |
| AGGGGCTTCAGGATAAACAA+AGG | 0.624425 | 8_1:-90026175 | None:intergenic |
| TCGGTCTATAGAGCATAGAG+TGG | 0.648643 | 8_1:-90026251 | None:intergenic |
| TCACAAGAGATACCAAAACC+AGG | 0.653988 | 8_1:-90026367 | None:intergenic |
| AGCTTCGTGTCAAAGAATTG+CGG | 0.657427 | 8_1:+90026712 | Msa1224900:CDS |
| GCTTGTGAACCCAAAACATG+TGG | 0.663982 | 8_1:+90026283 | Msa1224900:CDS |
| CACAAGAGATACCAAAACCA+GGG | 0.666790 | 8_1:-90026366 | None:intergenic |
| CTTGTGAACCCAAAACATGT+GGG | 0.671415 | 8_1:+90026284 | Msa1224900:CDS |
| AGTCGCATGGAAGTCCAAGA+CGG | 0.672769 | 8_1:+90027266 | Msa1224900:CDS |
| AAATGAAGTGATTAATACGA+GGG | 0.673051 | 8_1:+90026735 | Msa1224900:CDS |
| ACTGTAACAGAACTGGAGGA+AGG | 0.675038 | 8_1:+90026839 | Msa1224900:CDS |
| AATGACTGTAACAGAACTGG+AGG | 0.682642 | 8_1:+90026835 | Msa1224900:CDS |
| TAATACTGAATACATAATCG+AGG | 0.692646 | 8_1:+90026423 | Msa1224900:CDS |
| GAAATGAAGTGATTAATACG+AGG | 0.735190 | 8_1:+90026734 | Msa1224900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTCATGTATGAATAAATTAA+GGG | - | chr8_1:90026208-90026227 | None:intergenic | 20.0% |
| !! | TGTGGTAAGAAAATAAAAAA+GGG | - | chr8_1:90026230-90026249 | None:intergenic | 20.0% |
| !! | TTGTGGTAAGAAAATAAAAA+AGG | - | chr8_1:90026231-90026250 | None:intergenic | 20.0% |
| !! | ATTCAGTATTAGAAAGATTA+AGG | - | chr8_1:90026414-90026433 | None:intergenic | 20.0% |
| !!! | AATATATCCAATTTGAGATT+GGG | - | chr8_1:90027122-90027141 | None:intergenic | 20.0% |
| !!! | AAATATATCCAATTTGAGAT+TGG | - | chr8_1:90027123-90027142 | None:intergenic | 20.0% |
| !! | AATAATTCATTACTTCAGTT+TGG | - | chr8_1:90027172-90027191 | None:intergenic | 20.0% |
| !! | GTCATGTATGAATAAATTAA+GGG | - | chr8_1:90026208-90026227 | None:intergenic | 20.0% |
| !! | TGTGGTAAGAAAATAAAAAA+GGG | - | chr8_1:90026230-90026249 | None:intergenic | 20.0% |
| !! | TTGTGGTAAGAAAATAAAAA+AGG | - | chr8_1:90026231-90026250 | None:intergenic | 20.0% |
| !! | ATTCAGTATTAGAAAGATTA+AGG | - | chr8_1:90026414-90026433 | None:intergenic | 20.0% |
| !!! | AATATATCCAATTTGAGATT+GGG | - | chr8_1:90027122-90027141 | None:intergenic | 20.0% |
| !!! | AAATATATCCAATTTGAGAT+TGG | - | chr8_1:90027123-90027142 | None:intergenic | 20.0% |
| !! | AATAATTCATTACTTCAGTT+TGG | - | chr8_1:90027172-90027191 | None:intergenic | 20.0% |
| ! | GGTCATGTATGAATAAATTA+AGG | - | chr8_1:90026209-90026228 | None:intergenic | 25.0% |
| ! | GTAATCCTATGATATAGAAA+GGG | - | chr8_1:90026327-90026346 | None:intergenic | 25.0% |
| ! | TGTAATCCTATGATATAGAA+AGG | - | chr8_1:90026328-90026347 | None:intergenic | 25.0% |
| ! | ATCTCTTGTGACAATAATAT+TGG | + | chr8_1:90026379-90026398 | Msa1224900:CDS | 25.0% |
| ! | GTATTAGAAAGATTAAGGAT+TGG | - | chr8_1:90026409-90026428 | None:intergenic | 25.0% |
| ! | TAATACTGAATACATAATCG+AGG | + | chr8_1:90026423-90026442 | Msa1224900:CDS | 25.0% |
| ! | AAATGAAGTGATTAATACGA+GGG | + | chr8_1:90026735-90026754 | Msa1224900:CDS | 25.0% |
| ! | CTCTCAAATAGAAATGATTT+GGG | + | chr8_1:90027096-90027115 | Msa1224900:intron | 25.0% |
| !!! | AGGTAAATGTTTTAGATTTC+TGG | + | chr8_1:90027305-90027324 | Msa1224900:CDS | 25.0% |
| ! | GGTCATGTATGAATAAATTA+AGG | - | chr8_1:90026209-90026228 | None:intergenic | 25.0% |
| ! | GTAATCCTATGATATAGAAA+GGG | - | chr8_1:90026327-90026346 | None:intergenic | 25.0% |
| ! | TGTAATCCTATGATATAGAA+AGG | - | chr8_1:90026328-90026347 | None:intergenic | 25.0% |
| ! | ATCTCTTGTGACAATAATAT+TGG | + | chr8_1:90026379-90026398 | Msa1224900:CDS | 25.0% |
| ! | GTATTAGAAAGATTAAGGAT+TGG | - | chr8_1:90026409-90026428 | None:intergenic | 25.0% |
| ! | TAATACTGAATACATAATCG+AGG | + | chr8_1:90026423-90026442 | Msa1224900:CDS | 25.0% |
| ! | AAATGAAGTGATTAATACGA+GGG | + | chr8_1:90026735-90026754 | Msa1224900:CDS | 25.0% |
| ! | CTCTCAAATAGAAATGATTT+GGG | + | chr8_1:90027096-90027115 | Msa1224900:intron | 25.0% |
| !!! | AGGTAAATGTTTTAGATTTC+TGG | + | chr8_1:90027305-90027324 | Msa1224900:CDS | 25.0% |
| ATAAATTAAGGGAGAAGAGA+GGG | - | chr8_1:90026197-90026216 | None:intergenic | 30.0% | |
| AATAAATTAAGGGAGAAGAG+AGG | - | chr8_1:90026198-90026217 | None:intergenic | 30.0% | |
| ! | GTTCACAAGCTTCAAATTTT+CGG | - | chr8_1:90026273-90026292 | None:intergenic | 30.0% |
| CATTGGAAACTCTAAATGAA+TGG | - | chr8_1:90026465-90026484 | None:intergenic | 30.0% | |
| ! | CATTCATTTAGAGTTTCCAA+TGG | + | chr8_1:90026463-90026482 | Msa1224900:CDS | 30.0% |
| ACAAGGTTGAACATGTTAAT+GGG | - | chr8_1:90026550-90026569 | None:intergenic | 30.0% | |
| TACAAGGTTGAACATGTTAA+TGG | - | chr8_1:90026551-90026570 | None:intergenic | 30.0% | |
| AATCTCACTTCACTTTGATT+AGG | - | chr8_1:90026574-90026593 | None:intergenic | 30.0% | |
| TGAAGAAAACAAAACGAGTT+CGG | + | chr8_1:90026657-90026676 | Msa1224900:CDS | 30.0% | |
| GAAATGAAGTGATTAATACG+AGG | + | chr8_1:90026734-90026753 | Msa1224900:CDS | 30.0% | |
| GCTCTCAAATAGAAATGATT+TGG | + | chr8_1:90027095-90027114 | Msa1224900:intron | 30.0% | |
| ATAAATTAAGGGAGAAGAGA+GGG | - | chr8_1:90026197-90026216 | None:intergenic | 30.0% | |
| AATAAATTAAGGGAGAAGAG+AGG | - | chr8_1:90026198-90026217 | None:intergenic | 30.0% | |
| ! | GTTCACAAGCTTCAAATTTT+CGG | - | chr8_1:90026273-90026292 | None:intergenic | 30.0% |
| CATTGGAAACTCTAAATGAA+TGG | - | chr8_1:90026465-90026484 | None:intergenic | 30.0% | |
| ! | CATTCATTTAGAGTTTCCAA+TGG | + | chr8_1:90026463-90026482 | Msa1224900:CDS | 30.0% |
| ACAAGGTTGAACATGTTAAT+GGG | - | chr8_1:90026550-90026569 | None:intergenic | 30.0% | |
| TACAAGGTTGAACATGTTAA+TGG | - | chr8_1:90026551-90026570 | None:intergenic | 30.0% | |
| AATCTCACTTCACTTTGATT+AGG | - | chr8_1:90026574-90026593 | None:intergenic | 30.0% | |
| TGAAGAAAACAAAACGAGTT+CGG | + | chr8_1:90026657-90026676 | Msa1224900:CDS | 30.0% | |
| GAAATGAAGTGATTAATACG+AGG | + | chr8_1:90026734-90026753 | Msa1224900:CDS | 30.0% | |
| GCTCTCAAATAGAAATGATT+TGG | + | chr8_1:90027095-90027114 | Msa1224900:intron | 30.0% | |
| ! | AGGGCTTTTCTTGTTCATTT+TGG | - | chr8_1:90026158-90026177 | None:intergenic | 35.0% |
| TAAATTAAGGGAGAAGAGAG+GGG | - | chr8_1:90026196-90026215 | None:intergenic | 35.0% | |
| AGAAAGGGTAGCTTATACTT+TGG | - | chr8_1:90026312-90026331 | None:intergenic | 35.0% | |
| AGCTACCCTTTCTATATCAT+AGG | + | chr8_1:90026319-90026338 | Msa1224900:CDS | 35.0% | |
| GGATTACAACATTCCTATTG+TGG | + | chr8_1:90026340-90026359 | Msa1224900:CDS | 35.0% | |
| TGATCTTGAAAACACACCAT+TGG | - | chr8_1:90026482-90026501 | None:intergenic | 35.0% | |
| TCAAGATCAAACACCAACAA+AGG | + | chr8_1:90026493-90026512 | Msa1224900:CDS | 35.0% | |
| ! | AATGGGAAAAGTGAGGTTTT+GGG | - | chr8_1:90026533-90026552 | None:intergenic | 35.0% |
| ! | TAATGGGAAAAGTGAGGTTT+TGG | - | chr8_1:90026534-90026553 | None:intergenic | 35.0% |
| ACATGTTAATGGGAAAAGTG+AGG | - | chr8_1:90026540-90026559 | None:intergenic | 35.0% | |
| CTTCACTTTGATTAGGTACA+AGG | - | chr8_1:90026567-90026586 | None:intergenic | 35.0% | |
| AGTGAAGTGAGATTGTTCTT+CGG | + | chr8_1:90026580-90026599 | Msa1224900:CDS | 35.0% | |
| ATTAATACGAGGGTGGAAAA+TGG | + | chr8_1:90026745-90026764 | Msa1224900:CDS | 35.0% | |
| !! | GAAATGGGTTTAGGTTGAAT+TGG | + | chr8_1:90026797-90026816 | Msa1224900:CDS | 35.0% |
| CATTCTGCAATATGTGATAC+AGG | + | chr8_1:90026916-90026935 | Msa1224900:CDS | 35.0% | |
| TAGATGCTTAAGACTTGCAT+AGG | - | chr8_1:90027214-90027233 | None:intergenic | 35.0% | |
| ! | AGGGCTTTTCTTGTTCATTT+TGG | - | chr8_1:90026158-90026177 | None:intergenic | 35.0% |
| TAAATTAAGGGAGAAGAGAG+GGG | - | chr8_1:90026196-90026215 | None:intergenic | 35.0% | |
| AGAAAGGGTAGCTTATACTT+TGG | - | chr8_1:90026312-90026331 | None:intergenic | 35.0% | |
| AGCTACCCTTTCTATATCAT+AGG | + | chr8_1:90026319-90026338 | Msa1224900:CDS | 35.0% | |
| GGATTACAACATTCCTATTG+TGG | + | chr8_1:90026340-90026359 | Msa1224900:CDS | 35.0% | |
| TGATCTTGAAAACACACCAT+TGG | - | chr8_1:90026482-90026501 | None:intergenic | 35.0% | |
| TCAAGATCAAACACCAACAA+AGG | + | chr8_1:90026493-90026512 | Msa1224900:CDS | 35.0% | |
| ! | AATGGGAAAAGTGAGGTTTT+GGG | - | chr8_1:90026533-90026552 | None:intergenic | 35.0% |
| ! | TAATGGGAAAAGTGAGGTTT+TGG | - | chr8_1:90026534-90026553 | None:intergenic | 35.0% |
| ACATGTTAATGGGAAAAGTG+AGG | - | chr8_1:90026540-90026559 | None:intergenic | 35.0% | |
| CTTCACTTTGATTAGGTACA+AGG | - | chr8_1:90026567-90026586 | None:intergenic | 35.0% | |
| AGTGAAGTGAGATTGTTCTT+CGG | + | chr8_1:90026580-90026599 | Msa1224900:CDS | 35.0% | |
| ATTAATACGAGGGTGGAAAA+TGG | + | chr8_1:90026745-90026764 | Msa1224900:CDS | 35.0% | |
| !! | GAAATGGGTTTAGGTTGAAT+TGG | + | chr8_1:90026797-90026816 | Msa1224900:CDS | 35.0% |
| CATTCTGCAATATGTGATAC+AGG | + | chr8_1:90026916-90026935 | Msa1224900:CDS | 35.0% | |
| TAGATGCTTAAGACTTGCAT+AGG | - | chr8_1:90027214-90027233 | None:intergenic | 35.0% | |
| !! | TCATTTTGGAGACTTCTCTC+TGG | - | chr8_1:90026144-90026163 | None:intergenic | 40.0% |
| TATAGAGCATAGAGTGGTTG+TGG | - | chr8_1:90026248-90026267 | None:intergenic | 40.0% | |
| CTTGTGAACCCAAAACATGT+GGG | + | chr8_1:90026284-90026303 | Msa1224900:CDS | 40.0% | |
| !! | CTTTGGTTCCCACATGTTTT+GGG | - | chr8_1:90026295-90026314 | None:intergenic | 40.0% |
| !! | ACTTTGGTTCCCACATGTTT+TGG | - | chr8_1:90026296-90026315 | None:intergenic | 40.0% |
| CACAAGAGATACCAAAACCA+GGG | - | chr8_1:90026369-90026388 | None:intergenic | 40.0% | |
| TCACAAGAGATACCAAAACC+AGG | - | chr8_1:90026370-90026389 | None:intergenic | 40.0% | |
| TGGTGAAAGACAACCTTTGT+TGG | - | chr8_1:90026509-90026528 | None:intergenic | 40.0% | |
| AAACAAAACGAGTTCGGTTG+TGG | + | chr8_1:90026663-90026682 | Msa1224900:CDS | 40.0% | |
| AGCTTCGTGTCAAAGAATTG+CGG | + | chr8_1:90026712-90026731 | Msa1224900:CDS | 40.0% | |
| TGAAGTGATTAATACGAGGG+TGG | + | chr8_1:90026738-90026757 | Msa1224900:CDS | 40.0% | |
| TGGAAAATGGTGTGAAAGGA+GGG | + | chr8_1:90026758-90026777 | Msa1224900:CDS | 40.0% | |
| ATTGAAGAGTCGCTGAGAAA+TGG | + | chr8_1:90026781-90026800 | Msa1224900:CDS | 40.0% | |
| TTGAAGAGTCGCTGAGAAAT+GGG | + | chr8_1:90026782-90026801 | Msa1224900:CDS | 40.0% | |
| TGCAATGACTGTAACAGAAC+TGG | + | chr8_1:90026832-90026851 | Msa1224900:CDS | 40.0% | |
| AATGACTGTAACAGAACTGG+AGG | + | chr8_1:90026835-90026854 | Msa1224900:CDS | 40.0% | |
| CTGAAACACACGTTCTAATG+TGG | - | chr8_1:90027057-90027076 | None:intergenic | 40.0% | |
| ATTTGGGCCCAATCTCAAAT+TGG | + | chr8_1:90027112-90027131 | Msa1224900:intron | 40.0% | |
| !! | TCATTTTGGAGACTTCTCTC+TGG | - | chr8_1:90026144-90026163 | None:intergenic | 40.0% |
| TATAGAGCATAGAGTGGTTG+TGG | - | chr8_1:90026248-90026267 | None:intergenic | 40.0% | |
| CTTGTGAACCCAAAACATGT+GGG | + | chr8_1:90026284-90026303 | Msa1224900:CDS | 40.0% | |
| !! | CTTTGGTTCCCACATGTTTT+GGG | - | chr8_1:90026295-90026314 | None:intergenic | 40.0% |
| !! | ACTTTGGTTCCCACATGTTT+TGG | - | chr8_1:90026296-90026315 | None:intergenic | 40.0% |
| CACAAGAGATACCAAAACCA+GGG | - | chr8_1:90026369-90026388 | None:intergenic | 40.0% | |
| TCACAAGAGATACCAAAACC+AGG | - | chr8_1:90026370-90026389 | None:intergenic | 40.0% | |
| TGGTGAAAGACAACCTTTGT+TGG | - | chr8_1:90026509-90026528 | None:intergenic | 40.0% | |
| AAACAAAACGAGTTCGGTTG+TGG | + | chr8_1:90026663-90026682 | Msa1224900:CDS | 40.0% | |
| AGCTTCGTGTCAAAGAATTG+CGG | + | chr8_1:90026712-90026731 | Msa1224900:CDS | 40.0% | |
| TGAAGTGATTAATACGAGGG+TGG | + | chr8_1:90026738-90026757 | Msa1224900:CDS | 40.0% | |
| TGGAAAATGGTGTGAAAGGA+GGG | + | chr8_1:90026758-90026777 | Msa1224900:CDS | 40.0% | |
| ATTGAAGAGTCGCTGAGAAA+TGG | + | chr8_1:90026781-90026800 | Msa1224900:CDS | 40.0% | |
| TTGAAGAGTCGCTGAGAAAT+GGG | + | chr8_1:90026782-90026801 | Msa1224900:CDS | 40.0% | |
| TGCAATGACTGTAACAGAAC+TGG | + | chr8_1:90026832-90026851 | Msa1224900:CDS | 40.0% | |
| AATGACTGTAACAGAACTGG+AGG | + | chr8_1:90026835-90026854 | Msa1224900:CDS | 40.0% | |
| CTGAAACACACGTTCTAATG+TGG | - | chr8_1:90027057-90027076 | None:intergenic | 40.0% | |
| ATTTGGGCCCAATCTCAAAT+TGG | + | chr8_1:90027112-90027131 | Msa1224900:intron | 40.0% | |
| GGGGCTTCAGGATAAACAAA+GGG | - | chr8_1:90026177-90026196 | None:intergenic | 45.0% | |
| AGGGGCTTCAGGATAAACAA+AGG | - | chr8_1:90026178-90026197 | None:intergenic | 45.0% | |
| TCGGTCTATAGAGCATAGAG+TGG | - | chr8_1:90026254-90026273 | None:intergenic | 45.0% | |
| GCTTGTGAACCCAAAACATG+TGG | + | chr8_1:90026283-90026302 | Msa1224900:CDS | 45.0% | |
| AAAACCAGGGTAGCCACAAT+AGG | - | chr8_1:90026356-90026375 | None:intergenic | 45.0% | |
| ! | TATTGTGGCTACCCTGGTTT+TGG | + | chr8_1:90026355-90026374 | Msa1224900:CDS | 45.0% |
| !!! | GGAAAAGTGAGGTTTTGGGT+TGG | - | chr8_1:90026529-90026548 | None:intergenic | 45.0% |
| GAGCTGCAAAGGAACACAAT+TGG | + | chr8_1:90026628-90026647 | Msa1224900:CDS | 45.0% | |
| AGTTCGGTTGTGGCATTGTA+TGG | + | chr8_1:90026673-90026692 | Msa1224900:CDS | 45.0% | |
| AGGGTGGAAAATGGTGTGAA+AGG | + | chr8_1:90026754-90026773 | Msa1224900:CDS | 45.0% | |
| GTGGAAAATGGTGTGAAAGG+AGG | + | chr8_1:90026757-90026776 | Msa1224900:CDS | 45.0% | |
| ! | AGTCGCTGAGAAATGGGTTT+AGG | + | chr8_1:90026788-90026807 | Msa1224900:CDS | 45.0% |
| ACTGTAACAGAACTGGAGGA+AGG | + | chr8_1:90026839-90026858 | Msa1224900:CDS | 45.0% | |
| TCTCTCTCTCGGAAAATGCA+CGG | + | chr8_1:90026953-90026972 | Msa1224900:intron | 45.0% | |
| ! | AGAGCTTAAGTGTTGCTCGA+AGG | - | chr8_1:90027080-90027099 | None:intergenic | 45.0% |
| ACGGTGCGTATAGTGACAAT+AGG | + | chr8_1:90027285-90027304 | Msa1224900:CDS | 45.0% | |
| GGGGCTTCAGGATAAACAAA+GGG | - | chr8_1:90026177-90026196 | None:intergenic | 45.0% | |
| AGGGGCTTCAGGATAAACAA+AGG | - | chr8_1:90026178-90026197 | None:intergenic | 45.0% | |
| TCGGTCTATAGAGCATAGAG+TGG | - | chr8_1:90026254-90026273 | None:intergenic | 45.0% | |
| GCTTGTGAACCCAAAACATG+TGG | + | chr8_1:90026283-90026302 | Msa1224900:CDS | 45.0% | |
| AAAACCAGGGTAGCCACAAT+AGG | - | chr8_1:90026356-90026375 | None:intergenic | 45.0% | |
| ! | TATTGTGGCTACCCTGGTTT+TGG | + | chr8_1:90026355-90026374 | Msa1224900:CDS | 45.0% |
| !!! | GGAAAAGTGAGGTTTTGGGT+TGG | - | chr8_1:90026529-90026548 | None:intergenic | 45.0% |
| GAGCTGCAAAGGAACACAAT+TGG | + | chr8_1:90026628-90026647 | Msa1224900:CDS | 45.0% | |
| AGTTCGGTTGTGGCATTGTA+TGG | + | chr8_1:90026673-90026692 | Msa1224900:CDS | 45.0% | |
| AGGGTGGAAAATGGTGTGAA+AGG | + | chr8_1:90026754-90026773 | Msa1224900:CDS | 45.0% | |
| GTGGAAAATGGTGTGAAAGG+AGG | + | chr8_1:90026757-90026776 | Msa1224900:CDS | 45.0% | |
| ! | AGTCGCTGAGAAATGGGTTT+AGG | + | chr8_1:90026788-90026807 | Msa1224900:CDS | 45.0% |
| ACTGTAACAGAACTGGAGGA+AGG | + | chr8_1:90026839-90026858 | Msa1224900:CDS | 45.0% | |
| TCTCTCTCTCGGAAAATGCA+CGG | + | chr8_1:90026953-90026972 | Msa1224900:intron | 45.0% | |
| ! | AGAGCTTAAGTGTTGCTCGA+AGG | - | chr8_1:90027080-90027099 | None:intergenic | 45.0% |
| ACGGTGCGTATAGTGACAAT+AGG | + | chr8_1:90027285-90027304 | Msa1224900:CDS | 45.0% | |
| CATTCCTATTGTGGCTACCC+TGG | + | chr8_1:90026349-90026368 | Msa1224900:CDS | 50.0% | |
| GTGTTCCTTTGCAGCTCTCT+GGG | - | chr8_1:90026625-90026644 | None:intergenic | 50.0% | |
| TGTGTTCCTTTGCAGCTCTC+TGG | - | chr8_1:90026626-90026645 | None:intergenic | 50.0% | |
| AACAGAACTGGAGGAAGGTG+TGG | + | chr8_1:90026844-90026863 | Msa1224900:CDS | 50.0% | |
| CTCTCTCTCTCTCTCTCTCT+CGG | + | chr8_1:90026940-90026959 | Msa1224900:intron | 50.0% | |
| AGTCGCATGGAAGTCCAAGA+CGG | + | chr8_1:90027266-90027285 | Msa1224900:CDS | 50.0% | |
| TGTCACTATACGCACCGTCT+TGG | - | chr8_1:90027283-90027302 | None:intergenic | 50.0% | |
| CATTCCTATTGTGGCTACCC+TGG | + | chr8_1:90026349-90026368 | Msa1224900:CDS | 50.0% | |
| GTGTTCCTTTGCAGCTCTCT+GGG | - | chr8_1:90026625-90026644 | None:intergenic | 50.0% | |
| TGTGTTCCTTTGCAGCTCTC+TGG | - | chr8_1:90026626-90026645 | None:intergenic | 50.0% | |
| AACAGAACTGGAGGAAGGTG+TGG | + | chr8_1:90026844-90026863 | Msa1224900:CDS | 50.0% | |
| CTCTCTCTCTCTCTCTCTCT+CGG | + | chr8_1:90026940-90026959 | Msa1224900:intron | 50.0% | |
| AGTCGCATGGAAGTCCAAGA+CGG | + | chr8_1:90027266-90027285 | Msa1224900:CDS | 50.0% | |
| TGTCACTATACGCACCGTCT+TGG | - | chr8_1:90027283-90027302 | None:intergenic | 50.0% | |
| AGCTACCCAGAGAGCTGCAA+AGG | + | chr8_1:90026617-90026636 | Msa1224900:CDS | 55.0% | |
| CAATTGCAGCTGCAGTCGCA+TGG | + | chr8_1:90027253-90027272 | Msa1224900:intron | 55.0% | |
| AGCTACCCAGAGAGCTGCAA+AGG | + | chr8_1:90026617-90026636 | Msa1224900:CDS | 55.0% | |
| CAATTGCAGCTGCAGTCGCA+TGG | + | chr8_1:90027253-90027272 | Msa1224900:intron | 55.0% | |
| AGGGAGAAGAGAGGGGCTTC+AGG | - | chr8_1:90026189-90026208 | None:intergenic | 60.0% | |
| AGGGAGAAGAGAGGGGCTTC+AGG | - | chr8_1:90026189-90026208 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 90026134 | 90027335 | 90026134 | ID=Msa1224900;Name=Msa1224900 |
| chr8_1 | mRNA | 90026134 | 90027335 | 90026134 | ID=Msa1224900-mRNA-1;Parent=Msa1224900;Name=Msa1224900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=26|1|0.5|1|1|1|2|0|283 |
| chr8_1 | exon | 90026134 | 90026937 | 90026134 | ID=Msa1224900-mRNA-1:exon:32726;Parent=Msa1224900-mRNA-1 |
| chr8_1 | exon | 90027262 | 90027335 | 90027262 | ID=Msa1224900-mRNA-1:exon:32727;Parent=Msa1224900-mRNA-1 |
| chr8_1 | five_prime_UTR | 90026134 | 90026159 | 90026134 | ID=Msa1224900-mRNA-1:five_prime_utr;Parent=Msa1224900-mRNA-1 |
| chr8_1 | CDS | 90026160 | 90026937 | 90026160 | ID=Msa1224900-mRNA-1:cds;Parent=Msa1224900-mRNA-1 |
| chr8_1 | CDS | 90027262 | 90027335 | 90027262 | ID=Msa1224900-mRNA-1:cds;Parent=Msa1224900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
