Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227590 | XP_013445183.1 | 89.109 | 202 | 4 | 1 | 1 | 184 | 1 | 202 | 3.88e-121 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227590 | sp|Q94BZ1|ZIFL1_ARATH | 59.091 | 198 | 62 | 2 | 4 | 183 | 3 | 199 | 1.40e-78 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010760 | Msa1227590 | 0.804328 | 2.277566e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227590 | MtrunA17_Chr8g0354831 | 89.109 | 202 | 4 | 1 | 1 | 184 | 1 | 202 | 3.57e-125 | 361 |
| Msa1227590 | MtrunA17_Chr8g0354841 | 73.980 | 196 | 33 | 1 | 7 | 184 | 3 | 198 | 1.02e-103 | 306 |
| Msa1227590 | MtrunA17_Chr8g0354851 | 73.980 | 196 | 33 | 1 | 7 | 184 | 3 | 198 | 1.23e-103 | 306 |
| Msa1227590 | MtrunA17_Chr8g0354891 | 67.327 | 202 | 48 | 1 | 1 | 184 | 1 | 202 | 5.24e-96 | 286 |
| Msa1227590 | MtrunA17_Chr3g0080421 | 66.337 | 202 | 49 | 2 | 1 | 184 | 1 | 201 | 1.73e-91 | 275 |
| Msa1227590 | MtrunA17_Chr3g0123421 | 60.891 | 202 | 60 | 2 | 1 | 184 | 1 | 201 | 4.01e-86 | 252 |
| Msa1227590 | MtrunA17_Chr8g0364441 | 54.772 | 241 | 51 | 3 | 1 | 184 | 1 | 240 | 1.09e-83 | 254 |
| Msa1227590 | MtrunA17_Chr3g0080431 | 61.307 | 199 | 59 | 1 | 4 | 184 | 2 | 200 | 1.87e-75 | 234 |
| Msa1227590 | MtrunA17_Chr8g0354861 | 71.795 | 39 | 11 | 0 | 146 | 184 | 19 | 57 | 1.03e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227590 | AT5G13750.3 | 59.091 | 198 | 62 | 2 | 4 | 183 | 3 | 199 | 3.52e-80 | 244 |
| Msa1227590 | AT5G13750.4 | 59.091 | 198 | 62 | 2 | 4 | 183 | 3 | 199 | 3.52e-80 | 244 |
| Msa1227590 | AT5G13750.1 | 59.091 | 198 | 62 | 2 | 4 | 183 | 3 | 199 | 1.43e-79 | 244 |
| Msa1227590 | AT5G13740.2 | 55.051 | 198 | 71 | 1 | 4 | 183 | 3 | 200 | 1.14e-77 | 238 |
| Msa1227590 | AT3G43790.5 | 55.721 | 201 | 68 | 2 | 1 | 183 | 1 | 198 | 1.69e-77 | 237 |
| Msa1227590 | AT5G13740.1 | 55.051 | 198 | 71 | 1 | 4 | 183 | 3 | 200 | 4.31e-77 | 238 |
| Msa1227590 | AT3G43790.1 | 55.721 | 201 | 68 | 2 | 1 | 183 | 1 | 198 | 1.43e-76 | 237 |
| Msa1227590 | AT3G43790.4 | 55.721 | 201 | 68 | 2 | 1 | 183 | 1 | 198 | 1.43e-76 | 237 |
| Msa1227590 | AT3G43790.2 | 55.721 | 201 | 68 | 2 | 1 | 183 | 1 | 198 | 2.00e-76 | 236 |
| Msa1227590 | AT3G43790.3 | 55.721 | 201 | 68 | 2 | 1 | 183 | 1 | 198 | 2.00e-76 | 236 |
| Msa1227590 | AT5G13750.2 | 60.177 | 113 | 27 | 1 | 89 | 183 | 1 | 113 | 3.61e-40 | 140 |
Find 38 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCCTTTGGAAAGATATT+TGG | 0.146054 | 8_2:-2906832 | None:intergenic |
| GAACTTTGACATCTGTATTA+TGG | 0.179763 | 8_2:+2905810 | Msa1227590:CDS |
| TGTTATCACAAGATTTCTTT+TGG | 0.235759 | 8_2:+2906068 | Msa1227590:CDS |
| AAAACTTGTAGTACCTTTAC+TGG | 0.271588 | 8_2:-2906114 | None:intergenic |
| AACTTTGACATCTGTATTAT+GGG | 0.312954 | 8_2:+2905811 | Msa1227590:CDS |
| GTAAGTGCAGCTTGGGGAAC+AGG | 0.372551 | 8_2:+2906526 | Msa1227590:CDS |
| GGTTTAGGTAAGTGCAGCTT+GGG | 0.372706 | 8_2:+2906519 | Msa1227590:intron |
| GGAACTTTAAATGGTGCAAT+TGG | 0.374218 | 8_2:+2906090 | Msa1227590:CDS |
| AAAACACCAATGACTATAAC+AGG | 0.374710 | 8_2:-2905863 | None:intergenic |
| GGAGAAGAAGCAATACTATA+AGG | 0.388545 | 8_2:+2904180 | Msa1227590:CDS |
| TGGGGAACAGGTTTAATCAT+TGG | 0.389285 | 8_2:+2906538 | Msa1227590:CDS |
| ATACACTCACCATGAAATAA+AGG | 0.395654 | 8_2:-2905159 | None:intergenic |
| CGAAAACCTGTTATAGTCAT+TGG | 0.412171 | 8_2:+2905857 | Msa1227590:CDS |
| TAAGGATTGTCCTGGTTGTA+AGG | 0.418630 | 8_2:+2904198 | Msa1227590:CDS |
| ATATTTGGATATTTCTCTGC+TGG | 0.421967 | 8_2:-2906817 | None:intergenic |
| TTAATCATTGGACCAGCATT+GGG | 0.448070 | 8_2:+2906550 | Msa1227590:CDS |
| TTTAATCATTGGACCAGCAT+TGG | 0.458138 | 8_2:+2906549 | Msa1227590:CDS |
| GCTAAATAGCCTCCCAATGC+TGG | 0.464002 | 8_2:-2906562 | None:intergenic |
| AGCTACTATGCTGGCTATGT+AGG | 0.471772 | 8_2:+2905681 | Msa1227590:CDS |
| GACATCTGTATTATGGGGAA+TGG | 0.486093 | 8_2:+2905817 | Msa1227590:CDS |
| ATTGGGAGGCTATTTAGCTC+AGG | 0.497547 | 8_2:+2906567 | Msa1227590:CDS |
| AAATATGAGAGAGCCATTGT+TGG | 0.503789 | 8_2:+2904159 | Msa1227590:CDS |
| TGGTGCAATTGGACCAGTAA+AGG | 0.511905 | 8_2:+2906101 | Msa1227590:CDS |
| TATTGCTTCTTCTCCAACAA+TGG | 0.519872 | 8_2:-2904172 | None:intergenic |
| TGGTTTAGGTAAGTGCAGCT+TGG | 0.525939 | 8_2:+2906518 | Msa1227590:intron |
| GTAGGATCATCATTCATGCT+TGG | 0.553411 | 8_2:+2905785 | Msa1227590:intron |
| ATAGTAGCTAATATCAGCCT+CGG | 0.569820 | 8_2:-2905667 | None:intergenic |
| CAATACTATAAGGATTGTCC+TGG | 0.572453 | 8_2:+2904190 | Msa1227590:CDS |
| CTCACCATGAAATAAAGGAA+TGG | 0.586715 | 8_2:-2905154 | None:intergenic |
| ATTAATCTGTCACATAAACA+TGG | 0.594445 | 8_2:+2904129 | Msa1227590:exon |
| ATCATTGGACCAGCATTGGG+AGG | 0.595293 | 8_2:+2906553 | Msa1227590:CDS |
| GCTTGGTCAACCTTACAACC+AGG | 0.599602 | 8_2:-2904208 | None:intergenic |
| GCTGATATTAGCTACTATGC+TGG | 0.603154 | 8_2:+2905672 | Msa1227590:CDS |
| GGAATGGTTTCTGATCGCTA+TGG | 0.618861 | 8_2:+2905833 | Msa1227590:CDS |
| ACTTTGACATCTGTATTATG+GGG | 0.630925 | 8_2:+2905812 | Msa1227590:CDS |
| TTAATCTGTCACATAAACAT+GGG | 0.657892 | 8_2:+2904130 | Msa1227590:exon |
| GTTTAGGTAAGTGCAGCTTG+GGG | 0.699179 | 8_2:+2906520 | Msa1227590:intron |
| CAAGCAAAAGAGCTTAACCA+AGG | 0.710227 | 8_2:+2904226 | Msa1227590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTAAGAATACAATTTT+TGG | + | chr8_2:2905559-2905578 | Msa1227590:intron | 10.0% |
| !! | TTATTCATATACATACAAAA+AGG | - | chr8_2:2905454-2905473 | None:intergenic | 15.0% |
| !! | TTTGTATGTATATGAATAAT+TGG | + | chr8_2:2905455-2905474 | Msa1227590:intron | 15.0% |
| !!! | TATATCATAGTTATTTTCTA+CGG | - | chr8_2:2905938-2905957 | None:intergenic | 15.0% |
| !!! | TACAAGTTTTTAATTAACTA+GGG | + | chr8_2:2906127-2906146 | Msa1227590:intron | 15.0% |
| !! | CTAATTAAAATTGTGATATA+TGG | + | chr8_2:2906489-2906508 | Msa1227590:intron | 15.0% |
| !!! | TGTATCCATTAAAAATCTTT+TGG | + | chr8_2:2904249-2904268 | Msa1227590:CDS | 20.0% |
| !!! | TATGACCAAAAGATTTTTAA+TGG | - | chr8_2:2904257-2904276 | None:intergenic | 20.0% |
| !!! | TTAAAAATCTTTTGGTCATA+TGG | + | chr8_2:2904257-2904276 | Msa1227590:CDS | 20.0% |
| !! | TTTGTAAAAGAGAAAAAATG+TGG | + | chr8_2:2904643-2904662 | Msa1227590:intron | 20.0% |
| !! | TTGTAAAAGAGAAAAAATGT+GGG | + | chr8_2:2904644-2904663 | Msa1227590:intron | 20.0% |
| !! | AGTAAAAAGGAAAATGAAAT+TGG | - | chr8_2:2905208-2905227 | None:intergenic | 20.0% |
| !! | AATATAATTAAAACCCACTT+GGG | - | chr8_2:2905367-2905386 | None:intergenic | 20.0% |
| !! | AAATATAATTAAAACCCACT+TGG | - | chr8_2:2905368-2905387 | None:intergenic | 20.0% |
| !!! | TAAGAATACAATTTTTGGTT+AGG | + | chr8_2:2905564-2905583 | Msa1227590:intron | 20.0% |
| !!! | AACATTTAATTTTCAGGTAA+GGG | + | chr8_2:2905626-2905645 | Msa1227590:intron | 20.0% |
| !!! | CTACAAGTTTTTAATTAACT+AGG | + | chr8_2:2906126-2906145 | Msa1227590:intron | 20.0% |
| !!! | CACAATTTTAATTAGTATGA+TGG | - | chr8_2:2906484-2906503 | None:intergenic | 20.0% |
| !!! | ATTGTGATATATGGTTTTAT+TGG | + | chr8_2:2906498-2906517 | Msa1227590:intron | 20.0% |
| !!! | ATATATGGTTTTATTGGTTT+AGG | + | chr8_2:2906504-2906523 | Msa1227590:intron | 20.0% |
| ! | ATTAATCTGTCACATAAACA+TGG | + | chr8_2:2904129-2904148 | Msa1227590:exon | 25.0% |
| ! | TTAATCTGTCACATAAACAT+GGG | + | chr8_2:2904130-2904149 | Msa1227590:exon | 25.0% |
| ! | AAGTCCTAATGAACAAAAAT+TGG | - | chr8_2:2904363-2904382 | None:intergenic | 25.0% |
| !! | ACATTTGAGTTTCCTTTATT+AGG | + | chr8_2:2904614-2904633 | Msa1227590:intron | 25.0% |
| !! | TACAAACTTTTGCCTAATAA+AGG | - | chr8_2:2904629-2904648 | None:intergenic | 25.0% |
| ! | TGTAATCAATAAGAGAGAAT+AGG | + | chr8_2:2904765-2904784 | Msa1227590:intron | 25.0% |
| !!! | TTTTCCATTCCTTTATTTCA+TGG | + | chr8_2:2905150-2905169 | Msa1227590:CDS | 25.0% |
| ! | ACATAATACAATCTTCAATG+AGG | + | chr8_2:2905602-2905621 | Msa1227590:intron | 25.0% |
| !!! | CAACATTTAATTTTCAGGTA+AGG | + | chr8_2:2905625-2905644 | Msa1227590:intron | 25.0% |
| !!! | TTTTAAAATTGCAAAATCCG+AGG | + | chr8_2:2905650-2905669 | Msa1227590:CDS | 25.0% |
| ! | AACTTTGACATCTGTATTAT+GGG | + | chr8_2:2905811-2905830 | Msa1227590:CDS | 25.0% |
| !! | TGTTATCACAAGATTTCTTT+TGG | + | chr8_2:2906068-2906087 | Msa1227590:CDS | 25.0% |
| !! | GTTATCACAAGATTTCTTTT+GGG | + | chr8_2:2906069-2906088 | Msa1227590:CDS | 25.0% |
| !!! | TTTCTTTTGGGAACTTTAAA+TGG | + | chr8_2:2906081-2906100 | Msa1227590:CDS | 25.0% |
| ! | TTGAATACAAACAAAGTTTC+AGG | - | chr8_2:2906612-2906631 | None:intergenic | 25.0% |
| ! | TATTCAATTGAGAAGTTTGA+AGG | + | chr8_2:2906625-2906644 | Msa1227590:intron | 25.0% |
| !! | ATTTTCCATGACCAAATAAA+TGG | + | chr8_2:2906666-2906685 | Msa1227590:intron | 25.0% |
| ! | ATTGCAAAAGACCATTTATT+TGG | - | chr8_2:2906680-2906699 | None:intergenic | 25.0% |
| !! | GATTTTTAATGGATACACCT+TGG | - | chr8_2:2904246-2904265 | None:intergenic | 30.0% |
| ! | AAATCTTTTGGTCATATGGA+TGG | + | chr8_2:2904261-2904280 | Msa1227590:CDS | 30.0% |
| ! | CAGAAGTATATGAAATCAAG+AGG | - | chr8_2:2904318-2904337 | None:intergenic | 30.0% |
| ! | CTCTCCAATTTTTGTTCATT+AGG | + | chr8_2:2904356-2904375 | Msa1227590:intron | 30.0% |
| AATAATTAGCTAGCCAATGT+GGG | - | chr8_2:2904844-2904863 | None:intergenic | 30.0% | |
| AAATAATTAGCTAGCCAATG+TGG | - | chr8_2:2904845-2904864 | None:intergenic | 30.0% | |
| AATCTCTGCATTTCTTACTA+GGG | - | chr8_2:2905014-2905033 | None:intergenic | 30.0% | |
| AAATCTCTGCATTTCTTACT+AGG | - | chr8_2:2905015-2905034 | None:intergenic | 30.0% | |
| GCTGAAAATGACAACAAAAA+AGG | - | chr8_2:2905112-2905131 | None:intergenic | 30.0% | |
| ATACACTCACCATGAAATAA+AGG | - | chr8_2:2905162-2905181 | None:intergenic | 30.0% | |
| CTAAATTAACCCACCTAAAT+TGG | + | chr8_2:2905267-2905286 | Msa1227590:intron | 30.0% | |
| CAAAAAGGATACTCAAAAAC+TGG | - | chr8_2:2905439-2905458 | None:intergenic | 30.0% | |
| !! | TGAGGCAACATTTAATTTTC+AGG | + | chr8_2:2905620-2905639 | Msa1227590:intron | 30.0% |
| TGATAAAAGACTTCAAAGAG+TGG | - | chr8_2:2905727-2905746 | None:intergenic | 30.0% | |
| CATTGTTATAAGTTGTTCAC+TGG | + | chr8_2:2905745-2905764 | Msa1227590:intron | 30.0% | |
| GTGATGATTGAAAATGTTGT+AGG | + | chr8_2:2905767-2905786 | Msa1227590:intron | 30.0% | |
| GAACTTTGACATCTGTATTA+TGG | + | chr8_2:2905810-2905829 | Msa1227590:CDS | 30.0% | |
| ACTTTGACATCTGTATTATG+GGG | + | chr8_2:2905812-2905831 | Msa1227590:CDS | 30.0% | |
| AAAACACCAATGACTATAAC+AGG | - | chr8_2:2905866-2905885 | None:intergenic | 30.0% | |
| AAAACTTGTAGTACCTTTAC+TGG | - | chr8_2:2906117-2906136 | None:intergenic | 30.0% | |
| CCTTAGTAGTATATAAGAGT+TGG | - | chr8_2:2906317-2906336 | None:intergenic | 30.0% | |
| CCAACTCTTATATACTACTA+AGG | + | chr8_2:2906314-2906333 | Msa1227590:intron | 30.0% | |
| !! | TTTTCAACTTCGGTTTGAAT+GGG | - | chr8_2:2906426-2906445 | None:intergenic | 30.0% |
| AAAGACCATTTATTTGGTCA+TGG | - | chr8_2:2906674-2906693 | None:intergenic | 30.0% | |
| ATATTTGGATATTTCTCTGC+TGG | - | chr8_2:2906820-2906839 | None:intergenic | 30.0% | |
| AAATATGAGAGAGCCATTGT+TGG | + | chr8_2:2904159-2904178 | Msa1227590:CDS | 35.0% | |
| TATTGCTTCTTCTCCAACAA+TGG | - | chr8_2:2904175-2904194 | None:intergenic | 35.0% | |
| GGAGAAGAAGCAATACTATA+AGG | + | chr8_2:2904180-2904199 | Msa1227590:CDS | 35.0% | |
| CAATACTATAAGGATTGTCC+TGG | + | chr8_2:2904190-2904209 | Msa1227590:CDS | 35.0% | |
| AGAGATTAATACTCCGAGAT+TGG | - | chr8_2:2904482-2904501 | None:intergenic | 35.0% | |
| AGATCTTGAAAAAGTTCGTG+CGG | + | chr8_2:2904566-2904585 | Msa1227590:intron | 35.0% | |
| ! | AATGGAAAAAGTGATGATGC+AGG | - | chr8_2:2905139-2905158 | None:intergenic | 35.0% |
| CTCACCATGAAATAAAGGAA+TGG | - | chr8_2:2905157-2905176 | None:intergenic | 35.0% | |
| TAATTAAAACCCACTTGGGT+TGG | - | chr8_2:2905363-2905382 | None:intergenic | 35.0% | |
| ATAATTGGTCCTGTAAGTGT+TGG | + | chr8_2:2905470-2905489 | Msa1227590:intron | 35.0% | |
| ATAGTAGCTAATATCAGCCT+CGG | - | chr8_2:2905670-2905689 | None:intergenic | 35.0% | |
| CGAAAACCTGTTATAGTCAT+TGG | + | chr8_2:2905857-2905876 | Msa1227590:CDS | 35.0% | |
| GGAACTTTAAATGGTGCAAT+TGG | + | chr8_2:2906090-2906109 | Msa1227590:CDS | 35.0% | |
| ACAGTACTCCTCTATTTAAC+AGG | + | chr8_2:2906228-2906247 | Msa1227590:intron | 35.0% | |
| AGCATAAGCCTGTTAAATAG+AGG | - | chr8_2:2906239-2906258 | None:intergenic | 35.0% | |
| !! | GTTTTCAACTTCGGTTTGAA+TGG | - | chr8_2:2906427-2906446 | None:intergenic | 35.0% |
| TTTAATCATTGGACCAGCAT+TGG | + | chr8_2:2906549-2906568 | Msa1227590:CDS | 35.0% | |
| TTAATCATTGGACCAGCATT+GGG | + | chr8_2:2906550-2906569 | Msa1227590:CDS | 35.0% | |
| TAAGGATTGTCCTGGTTGTA+AGG | + | chr8_2:2904198-2904217 | Msa1227590:CDS | 40.0% | |
| ! | CTTGGTTAAGCTCTTTTGCT+TGG | - | chr8_2:2904228-2904247 | None:intergenic | 40.0% |
| CAAGCAAAAGAGCTTAACCA+AGG | + | chr8_2:2904226-2904245 | Msa1227590:CDS | 40.0% | |
| GCTAATTGCTAATCCCACAT+TGG | + | chr8_2:2904828-2904847 | Msa1227590:intron | 40.0% | |
| ATGCAACTATGCAAGTTAGG+TGG | - | chr8_2:2904925-2904944 | None:intergenic | 40.0% | |
| GCAATGCAACTATGCAAGTT+AGG | - | chr8_2:2904928-2904947 | None:intergenic | 40.0% | |
| TACAACAGACCAACACTTAC+AGG | - | chr8_2:2905482-2905501 | None:intergenic | 40.0% | |
| GCTGATATTAGCTACTATGC+TGG | + | chr8_2:2905672-2905691 | Msa1227590:CDS | 40.0% | |
| GTAGGATCATCATTCATGCT+TGG | + | chr8_2:2905785-2905804 | Msa1227590:intron | 40.0% | |
| GACATCTGTATTATGGGGAA+TGG | + | chr8_2:2905817-2905836 | Msa1227590:CDS | 40.0% | |
| ! | GTCGTTCTCAACACACTTTT+TGG | + | chr8_2:2906021-2906040 | Msa1227590:CDS | 40.0% |
| !!! | TTGGCCTTAGTACGAGTTTT+TGG | + | chr8_2:2906040-2906059 | Msa1227590:CDS | 40.0% |
| CCATCCAAAAACTCGTACTA+AGG | - | chr8_2:2906047-2906066 | None:intergenic | 40.0% | |
| !! | CCTTAGTACGAGTTTTTGGA+TGG | + | chr8_2:2906044-2906063 | Msa1227590:CDS | 40.0% |
| GTAGTATATAAGAGTTGGCG+AGG | - | chr8_2:2906312-2906331 | None:intergenic | 40.0% | |
| ! | GACGACATGGTTTTCAACTT+CGG | - | chr8_2:2906436-2906455 | None:intergenic | 40.0% |
| CTAAGAACTAGAAGACGACA+TGG | - | chr8_2:2906449-2906468 | None:intergenic | 40.0% | |
| TGGGGAACAGGTTTAATCAT+TGG | + | chr8_2:2906538-2906557 | Msa1227590:CDS | 40.0% | |
| ! | TGTTTTCGCTCGCAACGTAT+AGG | + | chr8_2:2904731-2904750 | Msa1227590:intron | 45.0% |
| ! | ATTCTCCCTGGTGCCAATTT+AGG | - | chr8_2:2905283-2905302 | None:intergenic | 45.0% |
| !! | TGGTCTAGTGGTATTGGCTT+GGG | - | chr8_2:2905343-2905362 | None:intergenic | 45.0% |
| !! | TTGGTCTAGTGGTATTGGCT+TGG | - | chr8_2:2905344-2905363 | None:intergenic | 45.0% |
| !! | TTGGGTTGGTCTAGTGGTAT+TGG | - | chr8_2:2905349-2905368 | None:intergenic | 45.0% |
| !! | AGTGTTGGTCTGTTGTACTG+TGG | + | chr8_2:2905485-2905504 | Msa1227590:intron | 45.0% |
| ! | AGCTACTATGCTGGCTATGT+AGG | + | chr8_2:2905681-2905700 | Msa1227590:CDS | 45.0% |
| GGAATGGTTTCTGATCGCTA+TGG | + | chr8_2:2905833-2905852 | Msa1227590:CDS | 45.0% | |
| TGGTGCAATTGGACCAGTAA+AGG | + | chr8_2:2906101-2906120 | Msa1227590:CDS | 45.0% | |
| GCGTACACCTGGATACATAA+CGG | + | chr8_2:2906159-2906178 | Msa1227590:intron | 45.0% | |
| CACTGAACCGTTATGTATCC+AGG | - | chr8_2:2906169-2906188 | None:intergenic | 45.0% | |
| CGAGAAGAACATCAAGCTCT+AGG | + | chr8_2:2906271-2906290 | Msa1227590:intron | 45.0% | |
| TGGTTTAGGTAAGTGCAGCT+TGG | + | chr8_2:2906518-2906537 | Msa1227590:intron | 45.0% | |
| GGTTTAGGTAAGTGCAGCTT+GGG | + | chr8_2:2906519-2906538 | Msa1227590:intron | 45.0% | |
| GTTTAGGTAAGTGCAGCTTG+GGG | + | chr8_2:2906520-2906539 | Msa1227590:intron | 45.0% | |
| ! | ATTGGGAGGCTATTTAGCTC+AGG | + | chr8_2:2906567-2906586 | Msa1227590:CDS | 45.0% |
| !! | AAATATAATTAAAAGTAAAA+AGG | - | chr8_2:2905221-2905240 | None:intergenic | 5.0% |
| GCTTGGTCAACCTTACAACC+AGG | - | chr8_2:2904211-2904230 | None:intergenic | 50.0% | |
| GCATGTAGCGAGTCCAATCT+CGG | + | chr8_2:2904466-2904485 | Msa1227590:intron | 50.0% | |
| AACCCACCTAAATTGGCACC+AGG | + | chr8_2:2905274-2905293 | Msa1227590:intron | 50.0% | |
| ACCCACCTAAATTGGCACCA+GGG | + | chr8_2:2905275-2905294 | Msa1227590:intron | 50.0% | |
| ! | TCCCTGGTGCCAATTTAGGT+GGG | - | chr8_2:2905279-2905298 | None:intergenic | 50.0% |
| GTCTCAAGTTCGATTCTCCC+TGG | - | chr8_2:2905295-2905314 | None:intergenic | 50.0% | |
| GAATCGAACTTGAGACCTCG+AGG | + | chr8_2:2905299-2905318 | Msa1227590:intron | 50.0% | |
| TACCACTAGACCAACCCAAG+TGG | + | chr8_2:2905350-2905369 | Msa1227590:intron | 50.0% | |
| ACCACTAGACCAACCCAAGT+GGG | + | chr8_2:2905351-2905370 | Msa1227590:intron | 50.0% | |
| ! | GGCTTTTGAATGCGTACACC+TGG | + | chr8_2:2906148-2906167 | Msa1227590:intron | 50.0% |
| ! | ATCATTGGACCAGCATTGGG+AGG | + | chr8_2:2906553-2906572 | Msa1227590:CDS | 50.0% |
| GCTAAATAGCCTCCCAATGC+TGG | - | chr8_2:2906565-2906584 | None:intergenic | 50.0% | |
| ! | CTCCCTGGTGCCAATTTAGG+TGG | - | chr8_2:2905280-2905299 | None:intergenic | 55.0% |
| TCGAACTTGAGACCTCGAGG+AGG | + | chr8_2:2905302-2905321 | Msa1227590:intron | 55.0% | |
| !! | GTGGTATTGGCTTGGGACCT+GGG | - | chr8_2:2905336-2905355 | None:intergenic | 55.0% |
| !! | AGTGGTATTGGCTTGGGACC+TGG | - | chr8_2:2905337-2905356 | None:intergenic | 55.0% |
| !! | ACCCACTTGGGTTGGTCTAG+TGG | - | chr8_2:2905355-2905374 | None:intergenic | 55.0% |
| GTAAGTGCAGCTTGGGGAAC+AGG | + | chr8_2:2906526-2906545 | Msa1227590:CDS | 55.0% | |
| ! | TGGGAGTGTGCTCCTCCTCG+AGG | - | chr8_2:2905317-2905336 | None:intergenic | 65.0% |
| ! | TCGAGGAGGAGCACACTCCC+AGG | + | chr8_2:2905316-2905335 | Msa1227590:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 2904126 | 2906846 | 2904126 | ID=Msa1227590;Name=Msa1227590 |
| chr8_2 | mRNA | 2904126 | 2906846 | 2904126 | ID=Msa1227590-mRNA-1;Parent=Msa1227590;Name=Msa1227590-mRNA-1;_AED=0.35;_eAED=0.35;_QI=22|0.83|0.85|1|1|0.85|7|0|184 |
| chr8_2 | exon | 2904126 | 2904298 | 2904126 | ID=Msa1227590-mRNA-1:exon:819;Parent=Msa1227590-mRNA-1 |
| chr8_2 | exon | 2905131 | 2905171 | 2905131 | ID=Msa1227590-mRNA-1:exon:820;Parent=Msa1227590-mRNA-1 |
| chr8_2 | exon | 2905642 | 2905702 | 2905642 | ID=Msa1227590-mRNA-1:exon:821;Parent=Msa1227590-mRNA-1 |
| chr8_2 | exon | 2905789 | 2905891 | 2905789 | ID=Msa1227590-mRNA-1:exon:822;Parent=Msa1227590-mRNA-1 |
| chr8_2 | exon | 2906020 | 2906122 | 2906020 | ID=Msa1227590-mRNA-1:exon:823;Parent=Msa1227590-mRNA-1 |
| chr8_2 | exon | 2906526 | 2906588 | 2906526 | ID=Msa1227590-mRNA-1:exon:824;Parent=Msa1227590-mRNA-1 |
| chr8_2 | exon | 2906817 | 2906846 | 2906817 | ID=Msa1227590-mRNA-1:exon:825;Parent=Msa1227590-mRNA-1 |
| chr8_2 | five_prime_UTR | 2904126 | 2904147 | 2904126 | ID=Msa1227590-mRNA-1:five_prime_utr;Parent=Msa1227590-mRNA-1 |
| chr8_2 | CDS | 2904148 | 2904298 | 2904148 | ID=Msa1227590-mRNA-1:cds;Parent=Msa1227590-mRNA-1 |
| chr8_2 | CDS | 2905131 | 2905171 | 2905131 | ID=Msa1227590-mRNA-1:cds;Parent=Msa1227590-mRNA-1 |
| chr8_2 | CDS | 2905642 | 2905702 | 2905642 | ID=Msa1227590-mRNA-1:cds;Parent=Msa1227590-mRNA-1 |
| chr8_2 | CDS | 2905789 | 2905891 | 2905789 | ID=Msa1227590-mRNA-1:cds;Parent=Msa1227590-mRNA-1 |
| chr8_2 | CDS | 2906020 | 2906122 | 2906020 | ID=Msa1227590-mRNA-1:cds;Parent=Msa1227590-mRNA-1 |
| chr8_2 | CDS | 2906526 | 2906588 | 2906526 | ID=Msa1227590-mRNA-1:cds;Parent=Msa1227590-mRNA-1 |
| chr8_2 | CDS | 2906817 | 2906846 | 2906817 | ID=Msa1227590-mRNA-1:cds;Parent=Msa1227590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
