Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227910 | XP_003626854.1 | 98.907 | 366 | 2 | 1 | 1 | 364 | 398 | 763 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227910 | sp|Q7SZE5|SC23A_DANRE | 49.315 | 365 | 178 | 3 | 3 | 363 | 400 | 761 | 1.62e-124 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227910 | G7LEA6 | 98.907 | 366 | 2 | 1 | 1 | 364 | 398 | 763 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1227910 | Msa1310870 | 0.917837 | 3.262166e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227910 | MtrunA17_Chr8g0338351 | 98.907 | 366 | 2 | 1 | 1 | 364 | 398 | 763 | 0.0 | 748 |
| Msa1227910 | MtrunA17_Chr3g0122081 | 66.757 | 370 | 113 | 4 | 1 | 364 | 405 | 770 | 5.89e-179 | 516 |
| Msa1227910 | MtrunA17_Chr1g0206271 | 50.970 | 361 | 167 | 4 | 6 | 364 | 393 | 745 | 1.13e-119 | 363 |
| Msa1227910 | MtrunA17_Chr6g0471961 | 87.248 | 149 | 8 | 3 | 140 | 278 | 1 | 148 | 8.33e-84 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227910 | AT2G21630.1 | 74.317 | 366 | 89 | 2 | 1 | 364 | 399 | 761 | 0.0 | 552 |
| Msa1227910 | AT4G14160.2 | 65.668 | 367 | 121 | 3 | 1 | 364 | 407 | 771 | 1.23e-180 | 520 |
| Msa1227910 | AT4G14160.1 | 65.489 | 368 | 121 | 4 | 1 | 364 | 407 | 772 | 8.92e-179 | 516 |
| Msa1227910 | AT3G23660.1 | 64.850 | 367 | 124 | 3 | 1 | 364 | 400 | 764 | 6.37e-174 | 503 |
| Msa1227910 | AT1G05520.1 | 64.033 | 367 | 128 | 3 | 1 | 364 | 417 | 782 | 3.58e-172 | 499 |
| Msa1227910 | AT3G23660.2 | 60.560 | 393 | 124 | 4 | 1 | 364 | 400 | 790 | 2.98e-168 | 489 |
| Msa1227910 | AT5G43670.1 | 49.171 | 362 | 168 | 5 | 9 | 364 | 442 | 793 | 2.85e-115 | 353 |
| Msa1227910 | AT4G14160.3 | 59.391 | 197 | 78 | 1 | 1 | 197 | 407 | 601 | 1.46e-78 | 253 |
Find 120 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCTACTCTTTATCTTTC+AGG | 0.087631 | 8_2:-3311619 | Msa1227910:five_prime_UTR |
| GGCTGACAGGGTTCTGCTTT+TGG | 0.228877 | 8_2:-3308121 | Msa1227910:CDS |
| TCCTCGAGTATATTAGAATT+TGG | 0.233075 | 8_2:+3306716 | None:intergenic |
| TAAAATAAAAGTAAAGTATA+TGG | 0.238022 | 8_2:+3306750 | None:intergenic |
| TTATGCTCAGATGTTGTTAT+TGG | 0.238761 | 8_2:-3310149 | Msa1227910:CDS |
| ATTTCATATTCATTCCATTC+TGG | 0.281148 | 8_2:-3308180 | Msa1227910:CDS |
| TGACTATAGCAGCTGCTTCT+TGG | 0.296847 | 8_2:+3309193 | None:intergenic |
| ATCAAAGTCCAAGGGATTAT+TGG | 0.303965 | 8_2:-3310304 | Msa1227910:CDS |
| GATGTAATATTTCCTGTCAT+TGG | 0.308912 | 8_2:+3306896 | None:intergenic |
| TAGTGGACAAATGAGATTTC+GGG | 0.310912 | 8_2:-3309873 | Msa1227910:CDS |
| TGGAGGGGACATTATCTTTA+CGG | 0.333717 | 8_2:-3307066 | Msa1227910:CDS |
| AAATGTTTGTAATCATATTC+TGG | 0.334520 | 8_2:-3311693 | Msa1227910:five_prime_UTR |
| TTTCATACTAAGTCAGGAAT+TGG | 0.337271 | 8_2:+3309997 | None:intergenic |
| ATAAATTTGTGTTCCCGTTT+CGG | 0.339739 | 8_2:-3308513 | Msa1227910:CDS |
| GTGGGTACAATCATAAATAT+AGG | 0.343168 | 8_2:+3306773 | None:intergenic |
| CCAGAGAATACCTGATGTTC+TGG | 0.361604 | 8_2:+3308024 | None:intergenic |
| ACGCCAAGTGTCTTTCAAAA+TGG | 0.363384 | 8_2:-3309166 | Msa1227910:CDS |
| ATAGTGGACAAATGAGATTT+CGG | 0.370068 | 8_2:-3309874 | Msa1227910:CDS |
| CTTTCACGCAGATGGGTTGC+TGG | 0.372515 | 8_2:-3309842 | Msa1227910:CDS |
| GATATCCAGCCTTGCGCCAC+TGG | 0.372763 | 8_2:+3308055 | None:intergenic |
| CTAAAGTAAGCAGTCTCGTC+TGG | 0.373492 | 8_2:+3308261 | None:intergenic |
| CCCTTGTGCTTCTCTTGAAA+AGG | 0.377918 | 8_2:-3310281 | Msa1227910:intron |
| ATAACAACATCTGAGCATAA+TGG | 0.380339 | 8_2:+3310152 | None:intergenic |
| ACGACGTTCTCAGTTTGTTC+AGG | 0.386590 | 8_2:-3308412 | Msa1227910:intron |
| AAGCTTACCTGTATGCTTCC+TGG | 0.396031 | 8_2:+3309818 | None:intergenic |
| AGTCACCAAGGTCAGTCAAT+TGG | 0.398620 | 8_2:+3306854 | None:intergenic |
| ATTTGAGATAAACTGCTCTA+AGG | 0.400423 | 8_2:-3310329 | Msa1227910:CDS |
| TCGCAGCCATTGCGGCTGAC+AGG | 0.404401 | 8_2:-3308134 | Msa1227910:CDS |
| TTTCTGAAAATCTCCGAAAC+GGG | 0.411674 | 8_2:+3308500 | None:intergenic |
| CTTTCTGAAAATCTCCGAAA+CGG | 0.413296 | 8_2:+3308499 | None:intergenic |
| ATGTAATATTTCCTGTCATT+GGG | 0.413984 | 8_2:+3306897 | None:intergenic |
| GTTGTACTTACTGAAAGTTT+TGG | 0.416717 | 8_2:-3311549 | Msa1227910:five_prime_UTR |
| ATTGCCCAGTGGCGCAAGGC+TGG | 0.426768 | 8_2:-3308060 | Msa1227910:CDS |
| CCCTCCAGGGAGTGAAGCTT+CGG | 0.431488 | 8_2:+3307082 | None:intergenic |
| TTATGACTTACTTTGATGCT+AGG | 0.431600 | 8_2:+3311466 | None:intergenic |
| TAACAACATCTGAGCATAAT+GGG | 0.431894 | 8_2:+3310153 | None:intergenic |
| CTTCATTTAGTTTGTCTCCC+AGG | 0.432541 | 8_2:-3308467 | Msa1227910:CDS |
| CGCAGATGGGTTGCTGGACC+AGG | 0.443150 | 8_2:-3309836 | Msa1227910:CDS |
| TTCAGTTATCAGAATAATAG+TGG | 0.449093 | 8_2:-3309890 | Msa1227910:intron |
| GAGATTTCCTGTGCCTCGCC+TGG | 0.454313 | 8_2:-3307272 | Msa1227910:CDS |
| CAGATGTTGTTATTGGTCAA+GGG | 0.464231 | 8_2:-3310142 | Msa1227910:CDS |
| GTCACCAAGGTCAGTCAATT+GGG | 0.466874 | 8_2:+3306855 | None:intergenic |
| CGCAGCCATTGCGGCTGACA+GGG | 0.466910 | 8_2:-3308133 | Msa1227910:CDS |
| GTAATTATTTGCCCAATGAC+AGG | 0.468972 | 8_2:-3306908 | Msa1227910:three_prime_UTR |
| TGGGTACAATCATAAATATA+GGG | 0.469981 | 8_2:+3306774 | None:intergenic |
| TCATAATGAACCAGAACATC+AGG | 0.476605 | 8_2:-3308034 | Msa1227910:intron |
| AAAATAAAAGTAAAGTATAT+GGG | 0.477093 | 8_2:+3306751 | None:intergenic |
| TTACAACTCTTTCACGCAGA+TGG | 0.480188 | 8_2:-3309850 | Msa1227910:CDS |
| AAACTGCTGTTGAAAGGACT+GGG | 0.482381 | 8_2:-3311578 | Msa1227910:five_prime_UTR |
| GGAGACAAACTAAATGAAGA+TGG | 0.483143 | 8_2:+3308471 | None:intergenic |
| CTAATCTCTGTAAATGATCA+AGG | 0.485472 | 8_2:+3307021 | None:intergenic |
| AAAACTGCTGTTGAAAGGAC+TGG | 0.494421 | 8_2:-3311579 | Msa1227910:five_prime_UTR |
| CTACTCTTTATCTTTCAGGT+TGG | 0.494482 | 8_2:-3311615 | Msa1227910:five_prime_UTR |
| GCCTTGTCCAACCATCTGAT+AGG | 0.495172 | 8_2:+3308540 | None:intergenic |
| CCAATCTGGTGATTATGACA+TGG | 0.497087 | 8_2:-3311490 | Msa1227910:exon |
| AGCCTTGCGCCACTGGGCAA+TGG | 0.504181 | 8_2:+3308062 | None:intergenic |
| CGTAAGTGAAACATAAATTG+TGG | 0.504287 | 8_2:+3308432 | None:intergenic |
| CTTGGTGACTAACTAGCAAA+TGG | 0.507519 | 8_2:-3306841 | Msa1227910:three_prime_UTR |
| TTGTGATCAGCATGGCTCCC+AGG | 0.509339 | 8_2:-3307245 | Msa1227910:intron |
| AACACCGAAGCTTCACTCCC+TGG | 0.509866 | 8_2:-3307086 | Msa1227910:CDS |
| TCAGATGTTGTTATTGGTCA+AGG | 0.511647 | 8_2:-3310143 | Msa1227910:CDS |
| TTAAGTGAATCCTTGAACAC+TGG | 0.518208 | 8_2:+3311522 | None:intergenic |
| ATTTGATCCTATCAGATGGT+TGG | 0.520252 | 8_2:-3308547 | Msa1227910:CDS |
| GTGGATTGCATTGTAGCGTC+TGG | 0.520785 | 8_2:+3310038 | None:intergenic |
| CCATGTCATAATCACCAGAT+TGG | 0.520811 | 8_2:+3311490 | None:intergenic |
| CACAAGGGCCAATAATCCCT+TGG | 0.526051 | 8_2:+3310296 | None:intergenic |
| AGCTTAAAACTGCTGTTGAA+AGG | 0.531045 | 8_2:-3311584 | Msa1227910:five_prime_UTR |
| TACAACTCTTTCACGCAGAT+GGG | 0.533908 | 8_2:-3309849 | Msa1227910:CDS |
| TTGTGGGAATATTGACAACC+TGG | 0.535351 | 8_2:+3308449 | None:intergenic |
| GTAAAGATAATGTCCCCTCC+AGG | 0.536203 | 8_2:+3307068 | None:intergenic |
| TGCTGGACCAGGAAGCATAC+AGG | 0.537072 | 8_2:-3309825 | Msa1227910:intron |
| GTAAGTGAAACATAAATTGT+GGG | 0.537478 | 8_2:+3308433 | None:intergenic |
| GAGACAAACTAAATGAAGAT+GGG | 0.541167 | 8_2:+3308472 | None:intergenic |
| ACATCGAGAAGAGCAGGCTC+AGG | 0.542411 | 8_2:+3308156 | None:intergenic |
| CAGAACCCTGTCAGCCGCAA+TGG | 0.544160 | 8_2:+3308128 | None:intergenic |
| AGTGTCTTTCAAAATGGAAA+CGG | 0.548687 | 8_2:-3309160 | Msa1227910:CDS |
| GCTGCGACATCGAGAAGAGC+AGG | 0.552124 | 8_2:+3308150 | None:intergenic |
| TCGAGTATATTAGAATTTGG+AGG | 0.552540 | 8_2:+3306719 | None:intergenic |
| ATATCCAGCCTTGCGCCACT+GGG | 0.555531 | 8_2:+3308056 | None:intergenic |
| GAAGTAAAATTGATTGCTTG+TGG | 0.557139 | 8_2:+3310019 | None:intergenic |
| CAATCTGGTGATTATGACAT+GGG | 0.557387 | 8_2:-3311489 | Msa1227910:exon |
| CGAAGCTTCACTCCCTGGAG+GGG | 0.558150 | 8_2:-3307081 | Msa1227910:CDS |
| CTGAATTTGATCCTATCAGA+TGG | 0.565796 | 8_2:-3308551 | Msa1227910:CDS |
| GAGCAGGCTCAGGACCAGAA+TGG | 0.566772 | 8_2:+3308166 | None:intergenic |
| CAAACAACCAGGCGAGGCAC+AGG | 0.569508 | 8_2:+3307265 | None:intergenic |
| CCGAAGCTTCACTCCCTGGA+GGG | 0.570630 | 8_2:-3307082 | Msa1227910:CDS |
| TGTTACTAACTCTGTCGTCA+TGG | 0.580054 | 8_2:-3308217 | Msa1227910:intron |
| TCGGTGTTATATGTTGCAGA+AGG | 0.580711 | 8_2:+3307101 | None:intergenic |
| TAAAGTAAGCAGTCTCGTCT+GGG | 0.587500 | 8_2:+3308262 | None:intergenic |
| ATAAAAGTAAAGTATATGGG+TGG | 0.589659 | 8_2:+3306754 | None:intergenic |
| CTGGTTGTTTGTGATCAGCA+TGG | 0.589670 | 8_2:-3307253 | Msa1227910:CDS |
| TCTAAGGACATCAAAGTCCA+AGG | 0.593017 | 8_2:-3310313 | Msa1227910:CDS |
| TCCAAATTCTAATATACTCG+AGG | 0.596804 | 8_2:-3306717 | None:intergenic |
| TAAAAGTAAAGTATATGGGT+GGG | 0.597128 | 8_2:+3306755 | None:intergenic |
| AGATGTTGTTATTGGTCAAG+GGG | 0.601195 | 8_2:-3310141 | Msa1227910:CDS |
| TAAAGATAATGTCCCCTCCA+GGG | 0.605233 | 8_2:+3307069 | None:intergenic |
| AATGAATATGAAATCAATGA+AGG | 0.610121 | 8_2:+3308189 | None:intergenic |
| GTGAATCCTTGAACACTGGA+TGG | 0.610162 | 8_2:+3311526 | None:intergenic |
| CATGCTGATCACAAACAACC+AGG | 0.619281 | 8_2:+3307254 | None:intergenic |
| AGAAGCAGCTGCTATAGTCA+TGG | 0.621270 | 8_2:-3309190 | Msa1227910:CDS |
| ACAGTGATGTCGATTTGTCA+AGG | 0.622560 | 8_2:+3310093 | None:intergenic |
| GTCTTTCAAAATGGAAACGG+AGG | 0.624277 | 8_2:-3309157 | Msa1227910:intron |
| TCCTATCAGATGGTTGGACA+AGG | 0.626498 | 8_2:-3308541 | Msa1227910:CDS |
| AGACAAACTAAATGAAGATG+GGG | 0.636091 | 8_2:+3308473 | None:intergenic |
| CTAAGGACATCAAAGTCCAA+GGG | 0.638797 | 8_2:-3310312 | Msa1227910:CDS |
| ACGGCCCAATTGACTGACCT+TGG | 0.642866 | 8_2:-3306859 | Msa1227910:three_prime_UTR |
| TGTGGGAATATTGACAACCT+GGG | 0.645997 | 8_2:+3308450 | None:intergenic |
| AACTGCTGTTGAAAGGACTG+GGG | 0.646315 | 8_2:-3311577 | Msa1227910:five_prime_UTR |
| ATTAAATCTGAATCATCATG+AGG | 0.650291 | 8_2:+3307304 | None:intergenic |
| GGATATAGTATTGTATAACA+AGG | 0.657445 | 8_2:+3306795 | None:intergenic |
| ACTGCTGTTGAAAGGACTGG+GGG | 0.668836 | 8_2:-3311576 | Msa1227910:five_prime_UTR |
| TGATCACAAACAACCAGGCG+AGG | 0.670853 | 8_2:+3307259 | None:intergenic |
| ACCGAAGCTTCACTCCCTGG+AGG | 0.671340 | 8_2:-3307083 | Msa1227910:CDS |
| TGTTTGTAATCATATTCTGG+TGG | 0.672553 | 8_2:-3311690 | Msa1227910:five_prime_UTR |
| ATGGTTCAACCATTGCCCAG+TGG | 0.673212 | 8_2:-3308071 | Msa1227910:CDS |
| TCTCGATGTCGCAGCCATTG+CGG | 0.676574 | 8_2:-3308142 | Msa1227910:CDS |
| GATGTTGTTATTGGTCAAGG+GGG | 0.679877 | 8_2:-3310140 | Msa1227910:CDS |
| AACTTTCAGTAAGTACAACA+AGG | 0.703236 | 8_2:+3311553 | None:intergenic |
| CATTTGCTAGTTAGTCACCA+AGG | 0.703483 | 8_2:+3306842 | None:intergenic |
| ACTAGTGCATGGAAGATGTG+TGG | 0.704231 | 8_2:-3310116 | Msa1227910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTATTATAAAAAAA+TGG | - | chr8_2:3308761-3308780 | Msa1227910:intron | 0.0% |
| !!! | AATTTAATTTTTCTATGATA+TGG | - | chr8_2:3307001-3307020 | Msa1227910:exon | 10.0% |
| !!! | CTTTTAAAATTATTTTTAAC+TGG | + | chr8_2:3309445-3309464 | None:intergenic | 10.0% |
| !!! | CAGTTAAAAATAATTTTAAA+AGG | - | chr8_2:3309443-3309462 | Msa1227910:intron | 10.0% |
| !! | TTTGTGTAAAAAAATAATAT+TGG | - | chr8_2:3311474-3311493 | Msa1227910:intron | 10.0% |
| !! | AAAATAAAAGTAAAGTATAT+GGG | + | chr8_2:3311693-3311712 | None:intergenic | 10.0% |
| !! | TAAAATAAAAGTAAAGTATA+TGG | + | chr8_2:3311694-3311713 | None:intergenic | 10.0% |
| !! | TCTACAATTATTGTTATAAA+TGG | + | chr8_2:3307763-3307782 | None:intergenic | 15.0% |
| !! | AGAAATGAGTAAAATAAAAA+GGG | + | chr8_2:3308972-3308991 | None:intergenic | 15.0% |
| !! | AAGAAATGAGTAAAATAAAA+AGG | + | chr8_2:3308973-3308992 | None:intergenic | 15.0% |
| !! | TGAATTTATTAAAAACAAGT+GGG | + | chr8_2:3309145-3309164 | None:intergenic | 15.0% |
| !! | ATGAATTTATTAAAAACAAG+TGG | + | chr8_2:3309146-3309165 | None:intergenic | 15.0% |
| !!! | AGTTATATGTAAAATTTTGT+AGG | - | chr8_2:3309206-3309225 | Msa1227910:CDS | 15.0% |
| !!! | TGTTTGTTTATTAGATATTT+TGG | - | chr8_2:3310718-3310737 | Msa1227910:intron | 15.0% |
| !!! | GTTTGTTTATTAGATATTTT+GGG | - | chr8_2:3310719-3310738 | Msa1227910:intron | 15.0% |
| !!! | TTAAATGTTTTAAGTTATCA+AGG | + | chr8_2:3310921-3310940 | None:intergenic | 15.0% |
| !! | ACTTAAAACATTTAACTATT+TGG | - | chr8_2:3310926-3310945 | Msa1227910:intron | 15.0% |
| !! | CTTAAAACATTTAACTATTT+GGG | - | chr8_2:3310927-3310946 | Msa1227910:intron | 15.0% |
| !! | TTAAAACATTTAACTATTTG+GGG | - | chr8_2:3310928-3310947 | Msa1227910:intron | 15.0% |
| !! | AAATGTTTGTAATCATATTC+TGG | - | chr8_2:3306748-3306767 | Msa1227910:three_prime_UTR | 20.0% |
| !! | TAAATGGTATCATAGAATTA+AGG | + | chr8_2:3307747-3307766 | None:intergenic | 20.0% |
| !!! | AAACATTTTGTTTTCCTTTT+GGG | + | chr8_2:3308241-3308260 | None:intergenic | 20.0% |
| !!! | TAAACATTTTGTTTTCCTTT+TGG | + | chr8_2:3308242-3308261 | None:intergenic | 20.0% |
| !! | ACTAAATTTAGTGAATCAAA+TGG | + | chr8_2:3308659-3308678 | None:intergenic | 20.0% |
| !! | TGCATATTTAGTTATACATA+AGG | - | chr8_2:3308803-3308822 | Msa1227910:intron | 20.0% |
| !!! | ATCATTTTATGAGCTTATTT+TGG | - | chr8_2:3308917-3308936 | Msa1227910:intron | 20.0% |
| !!! | AGTTTTATGTTTATTGTCTT+TGG | - | chr8_2:3309004-3309023 | Msa1227910:intron | 20.0% |
| !!! | TCATCATTTAATTCATTTTC+TGG | - | chr8_2:3309162-3309181 | Msa1227910:CDS | 20.0% |
| !!! | GCTTCTTTTTAATTGTATTT+TGG | - | chr8_2:3309326-3309345 | Msa1227910:intron | 20.0% |
| !!! | ATGAGATTTTTCAATAGAAA+TGG | - | chr8_2:3309575-3309594 | Msa1227910:intron | 20.0% |
| !!! | TGAGATTTTTCAATAGAAAT+GGG | - | chr8_2:3309576-3309595 | Msa1227910:intron | 20.0% |
| !! | ACAATGAAAAACTTTATAAG+AGG | + | chr8_2:3310076-3310095 | None:intergenic | 20.0% |
| !! | TTCGTTAATTATATAATTGC+AGG | - | chr8_2:3310143-3310162 | Msa1227910:CDS | 20.0% |
| !!! | ACTTTAGAATGATTTTAAAC+CGG | - | chr8_2:3310196-3310215 | Msa1227910:intron | 20.0% |
| !! | AATGAATATGAAATCAATGA+AGG | + | chr8_2:3310255-3310274 | None:intergenic | 20.0% |
| !! | TAAATTGTACTAGTAGTTTA+TGG | - | chr8_2:3310586-3310605 | Msa1227910:intron | 20.0% |
| !! | AAATTGTACTAGTAGTTTAT+GGG | - | chr8_2:3310587-3310606 | Msa1227910:intron | 20.0% |
| !!! | TTTTTGTGGAAAACTTTTAT+TGG | - | chr8_2:3310838-3310857 | Msa1227910:intron | 20.0% |
| !!! | ATATTACATCTACTTTTTTC+TGG | - | chr8_2:3311558-3311577 | Msa1227910:five_prime_UTR | 20.0% |
| ! | CATGCTGAATATAAATAACA+AGG | + | chr8_2:3307290-3307309 | None:intergenic | 25.0% |
| !!! | CTTGTTATTTATATTCAGCA+TGG | - | chr8_2:3307288-3307307 | Msa1227910:CDS | 25.0% |
| ! | AGATACGACTCATTTATATT+CGG | - | chr8_2:3307385-3307404 | Msa1227910:intron | 25.0% |
| !! | AAGTTGAGACTACAAATTTT+AGG | - | chr8_2:3307474-3307493 | Msa1227910:intron | 25.0% |
| !! | AGTTGAGACTACAAATTTTA+GGG | - | chr8_2:3307475-3307494 | Msa1227910:intron | 25.0% |
| ! | GAAATAGAATCCTACTATAA+TGG | + | chr8_2:3307652-3307671 | None:intergenic | 25.0% |
| !! | TTTTATCCTACTATGTTAAC+AGG | + | chr8_2:3307697-3307716 | None:intergenic | 25.0% |
| !! | TTTTCCATGGTGTTTATTAT+GGG | + | chr8_2:3307799-3307818 | None:intergenic | 25.0% |
| !! | ATTTTCCATGGTGTTTATTA+TGG | + | chr8_2:3307800-3307819 | None:intergenic | 25.0% |
| ! | TTCAGTTATCAGAATAATAG+TGG | - | chr8_2:3308551-3308570 | Msa1227910:CDS | 25.0% |
| ! | AAATTTAGTGAATCAAATGG+TGG | + | chr8_2:3308656-3308675 | None:intergenic | 25.0% |
| ! | TTGCTTTGCAGTATTAATAA+TGG | + | chr8_2:3308693-3308712 | None:intergenic | 25.0% |
| ! | AACTACTGATAAATATGCAA+GGG | + | chr8_2:3308878-3308897 | None:intergenic | 25.0% |
| ! | TACTCATTTCTTTACTGAAT+TGG | - | chr8_2:3308981-3309000 | Msa1227910:intron | 25.0% |
| ! | AATGAACATAAAACTAGCAT+TGG | + | chr8_2:3309037-3309056 | None:intergenic | 25.0% |
| !!! | ATTTTGTAGGATTTGATTTC+TGG | - | chr8_2:3309219-3309238 | Msa1227910:intron | 25.0% |
| ! | ATGCTTTACTTGGATTATTA+TGG | - | chr8_2:3309517-3309536 | Msa1227910:intron | 25.0% |
| ! | TTCATGAATGGAGTAAAAAA+TGG | + | chr8_2:3309632-3309651 | None:intergenic | 25.0% |
| !! | CCATTATTCATTTTCATGAA+TGG | + | chr8_2:3309644-3309663 | None:intergenic | 25.0% |
| ! | CCATTCATGAAAATGAATAA+TGG | - | chr8_2:3309641-3309660 | Msa1227910:intron | 25.0% |
| !! | TACAAAAGTGTAATCTGTAA+TGG | + | chr8_2:3309685-3309704 | None:intergenic | 25.0% |
| ! | GTAAGTGAAACATAAATTGT+GGG | + | chr8_2:3310011-3310030 | None:intergenic | 25.0% |
| !!! | CTTTAGAATGATTTTAAACC+GGG | - | chr8_2:3310197-3310216 | Msa1227910:intron | 25.0% |
| ! | ATTTCATATTCATTCCATTC+TGG | - | chr8_2:3310261-3310280 | Msa1227910:intron | 25.0% |
| !!! | AATCATTTAGTGTTTTGACA+CGG | - | chr8_2:3310549-3310568 | Msa1227910:intron | 25.0% |
| ! | TTATCTTTGCATTGTCAATT+TGG | - | chr8_2:3311064-3311083 | Msa1227910:intron | 25.0% |
| ! | ATTGTCAATTTGGTTAACTT+TGG | - | chr8_2:3311074-3311093 | Msa1227910:intron | 25.0% |
| ! | ATTAAATCTGAATCATCATG+AGG | + | chr8_2:3311140-3311159 | None:intergenic | 25.0% |
| ! | TACATTCTTATACTTTGATC+TGG | - | chr8_2:3311220-3311239 | Msa1227910:intron | 25.0% |
| !! | TACAAGATTTTGCACTAAAT+AGG | + | chr8_2:3311516-3311535 | None:intergenic | 25.0% |
| ! | ATGTAATATTTCCTGTCATT+GGG | + | chr8_2:3311547-3311566 | None:intergenic | 25.0% |
| ! | GGATATAGTATTGTATAACA+AGG | + | chr8_2:3311649-3311668 | None:intergenic | 25.0% |
| ! | TGGGTACAATCATAAATATA+GGG | + | chr8_2:3311670-3311689 | None:intergenic | 25.0% |
| ! | TAAAAGTAAAGTATATGGGT+GGG | + | chr8_2:3311689-3311708 | None:intergenic | 25.0% |
| ! | ATAAAAGTAAAGTATATGGG+TGG | + | chr8_2:3311690-3311709 | None:intergenic | 25.0% |
| TGTTTGTAATCATATTCTGG+TGG | - | chr8_2:3306751-3306770 | Msa1227910:three_prime_UTR | 30.0% | |
| AACTTTCAGTAAGTACAACA+AGG | + | chr8_2:3306891-3306910 | None:intergenic | 30.0% | |
| ! | GTTGTACTTACTGAAAGTTT+TGG | - | chr8_2:3306892-3306911 | Msa1227910:three_prime_UTR | 30.0% |
| TTATGACTTACTTTGATGCT+AGG | + | chr8_2:3306978-3306997 | None:intergenic | 30.0% | |
| ATATCGAGCACCAAATAAAA+GGG | + | chr8_2:3307096-3307115 | None:intergenic | 30.0% | |
| AATATCGAGCACCAAATAAA+AGG | + | chr8_2:3307097-3307116 | None:intergenic | 30.0% | |
| ! | TTGTTGTCTTTTTCTGTCAA+TGG | - | chr8_2:3307129-3307148 | Msa1227910:CDS | 30.0% |
| GCTGAATATAAATAACAAGG+AGG | + | chr8_2:3307287-3307306 | None:intergenic | 30.0% | |
| ! | AATTTTACACAATTGCACAC+TGG | + | chr8_2:3307437-3307456 | None:intergenic | 30.0% |
| AGTGTGCAATTGTGTAAAAT+TGG | - | chr8_2:3307436-3307455 | Msa1227910:intron | 30.0% | |
| !!! | GACTACAAATTTTAGGGTTA+AGG | - | chr8_2:3307481-3307500 | Msa1227910:intron | 30.0% |
| !!! | AATTTTAGGGTTAAGGAATG+AGG | - | chr8_2:3307488-3307507 | Msa1227910:intron | 30.0% |
| GAATGAGGAAAAAAGATAGA+GGG | - | chr8_2:3307503-3307522 | Msa1227910:intron | 30.0% | |
| ATAGAGGGAAGACTATAATT+GGG | - | chr8_2:3307518-3307537 | Msa1227910:intron | 30.0% | |
| AGAACATGAAACCAGTTAAA+TGG | - | chr8_2:3307601-3307620 | Msa1227910:intron | 30.0% | |
| CCAGTTAAATGGTATATACA+CGG | - | chr8_2:3307612-3307631 | Msa1227910:intron | 30.0% | |
| TAGTTGACAACCATTATAGT+AGG | - | chr8_2:3307639-3307658 | Msa1227910:intron | 30.0% | |
| !! | AGGATTCTATTTCTAGTTAC+TGG | - | chr8_2:3307659-3307678 | Msa1227910:intron | 30.0% |
| !! | ATTCTATTTCTAGTTACTGG+AGG | - | chr8_2:3307662-3307681 | Msa1227910:intron | 30.0% |
| ATGGTATCATAGAATTAAGG+TGG | + | chr8_2:3307744-3307763 | None:intergenic | 30.0% | |
| TGCACAGAGTAGATAAAATA+AGG | + | chr8_2:3308085-3308104 | None:intergenic | 30.0% | |
| ! | ATTTGAGATAAACTGCTCTA+AGG | - | chr8_2:3308112-3308131 | Msa1227910:CDS | 30.0% |
| TAACAACATCTGAGCATAAT+GGG | + | chr8_2:3308291-3308310 | None:intergenic | 30.0% | |
| ATAACAACATCTGAGCATAA+TGG | + | chr8_2:3308292-3308311 | None:intergenic | 30.0% | |
| TTATGCTCAGATGTTGTTAT+TGG | - | chr8_2:3308292-3308311 | Msa1227910:intron | 30.0% | |
| GAAGTAAAATTGATTGCTTG+TGG | + | chr8_2:3308425-3308444 | None:intergenic | 30.0% | |
| TTTCATACTAAGTCAGGAAT+TGG | + | chr8_2:3308447-3308466 | None:intergenic | 30.0% | |
| ! | GATAGTTTTCATACTAAGTC+AGG | + | chr8_2:3308453-3308472 | None:intergenic | 30.0% |
| !! | ATAGTGGACAAATGAGATTT+CGG | - | chr8_2:3308567-3308586 | Msa1227910:intron | 30.0% |
| ATACTGCAAAGCAATTCATT+TGG | - | chr8_2:3308699-3308718 | Msa1227910:intron | 30.0% | |
| TACTGCAAAGCAATTCATTT+GGG | - | chr8_2:3308700-3308719 | Msa1227910:intron | 30.0% | |
| TACTGCAAAGCAATTCATTT+GGG | - | chr8_2:3308700-3308719 | Msa1227910:intron | 30.0% | |
| GAACTACTGATAAATATGCA+AGG | + | chr8_2:3308879-3308898 | None:intergenic | 30.0% | |
| TGCATATTTATCAGTAGTTC+AGG | - | chr8_2:3308879-3308898 | Msa1227910:intron | 30.0% | |
| GCATATTTATCAGTAGTTCA+GGG | - | chr8_2:3308880-3308899 | Msa1227910:intron | 30.0% | |
| !! | TTTCCATTTTGAAAGACACT+TGG | + | chr8_2:3309281-3309300 | None:intergenic | 30.0% |
| AGTGTCTTTCAAAATGGAAA+CGG | - | chr8_2:3309281-3309300 | Msa1227910:intron | 30.0% | |
| AGAAACAAAAACCAATGACT+TGG | + | chr8_2:3309398-3309417 | None:intergenic | 30.0% | |
| AGTAAAGCATGTTAGAGAAA+TGG | + | chr8_2:3309507-3309526 | None:intergenic | 30.0% | |
| TTTCTCTAACATGCTTTACT+TGG | - | chr8_2:3309507-3309526 | Msa1227910:intron | 30.0% | |
| ATAAATTTGTGTTCCCGTTT+CGG | - | chr8_2:3309928-3309947 | Msa1227910:intron | 30.0% | |
| AGACAAACTAAATGAAGATG+GGG | + | chr8_2:3309971-3309990 | None:intergenic | 30.0% | |
| GAGACAAACTAAATGAAGAT+GGG | + | chr8_2:3309972-3309991 | None:intergenic | 30.0% | |
| CGTAAGTGAAACATAAATTG+TGG | + | chr8_2:3310012-3310031 | None:intergenic | 30.0% | |
| !!! | TTCACAGTCGTTATTTTTCA+TGG | - | chr8_2:3310351-3310370 | Msa1227910:intron | 30.0% |
| ! | TTGTGAAAGTATACGAGAAT+AGG | - | chr8_2:3310523-3310542 | Msa1227910:intron | 30.0% |
| AATCTTGAGTCATAATCATC+AGG | + | chr8_2:3310618-3310637 | None:intergenic | 30.0% | |
| GATGATTATGACTCAAGATT+AGG | - | chr8_2:3310618-3310637 | Msa1227910:intron | 30.0% | |
| AAGTCCTAGAAACTAATACA+AGG | + | chr8_2:3310691-3310710 | None:intergenic | 30.0% | |
| !! | ATTAGATATTTTGGGAGTTG+TGG | - | chr8_2:3310727-3310746 | Msa1227910:intron | 30.0% |
| !! | TTAGATATTTTGGGAGTTGT+GGG | - | chr8_2:3310728-3310747 | Msa1227910:intron | 30.0% |
| ! | GGAAAACTTTTATTGGATAG+AGG | - | chr8_2:3310845-3310864 | Msa1227910:intron | 30.0% |
| TAACTACGAAATCCATGTTA+TGG | - | chr8_2:3310967-3310986 | Msa1227910:intron | 30.0% | |
| ACTCATTCACAAATTTCCTA+TGG | + | chr8_2:3311037-3311056 | None:intergenic | 30.0% | |
| !! | CTTTGGTCAAATATTTTTGC+AGG | - | chr8_2:3311091-3311110 | Msa1227910:intron | 30.0% |
| !!! | TTTTTGGAATCTGACATGTA+TGG | - | chr8_2:3311270-3311289 | Msa1227910:intron | 30.0% |
| CTAATCTCTGTAAATGATCA+AGG | + | chr8_2:3311423-3311442 | None:intergenic | 30.0% | |
| GATGTAATATTTCCTGTCAT+TGG | + | chr8_2:3311548-3311567 | None:intergenic | 30.0% | |
| !!! | ACATCTACTTTTTTCTGGTA+CGG | - | chr8_2:3311563-3311582 | Msa1227910:five_prime_UTR | 30.0% |
| GTGGGTACAATCATAAATAT+AGG | + | chr8_2:3311671-3311690 | None:intergenic | 30.0% | |
| TGGTCTACTCTTTATCTTTC+AGG | - | chr8_2:3306822-3306841 | Msa1227910:three_prime_UTR | 35.0% | |
| ! | CTACTCTTTATCTTTCAGGT+TGG | - | chr8_2:3306826-3306845 | Msa1227910:three_prime_UTR | 35.0% |
| AGCTTAAAACTGCTGTTGAA+AGG | - | chr8_2:3306857-3306876 | Msa1227910:three_prime_UTR | 35.0% | |
| TTAAGTGAATCCTTGAACAC+TGG | + | chr8_2:3306922-3306941 | None:intergenic | 35.0% | |
| CAATCTGGTGATTATGACAT+GGG | - | chr8_2:3306952-3306971 | Msa1227910:three_prime_UTR | 35.0% | |
| ! | ATTCGTTCTCCCCTTTTATT+TGG | - | chr8_2:3307083-3307102 | Msa1227910:CDS | 35.0% |
| TATCGAGCACCAAATAAAAG+GGG | + | chr8_2:3307095-3307114 | None:intergenic | 35.0% | |
| TTGATGCAAAGCTGACTAAA+TGG | + | chr8_2:3307174-3307193 | None:intergenic | 35.0% | |
| TGAGAAAGATTTGGGTCTTT+AGG | + | chr8_2:3307238-3307257 | None:intergenic | 35.0% | |
| TAGGCATCTGAGAAAGATTT+GGG | + | chr8_2:3307246-3307265 | None:intergenic | 35.0% | |
| AAATAACAAGGAGGTTTGAG+AGG | + | chr8_2:3307278-3307297 | None:intergenic | 35.0% | |
| AACAATTCTCACCTGACTAA+TGG | - | chr8_2:3307322-3307341 | Msa1227910:CDS | 35.0% | |
| ACAATTCTCACCTGACTAAT+GGG | - | chr8_2:3307323-3307342 | Msa1227910:CDS | 35.0% | |
| GGAATGAGGAAAAAAGATAG+AGG | - | chr8_2:3307502-3307521 | Msa1227910:intron | 35.0% | |
| GATAGAGGGAAGACTATAAT+TGG | - | chr8_2:3307517-3307536 | Msa1227910:intron | 35.0% | |
| !! | GTGATTTTAAGCATTGTCGA+AGG | - | chr8_2:3307572-3307591 | Msa1227910:intron | 35.0% |
| !! | ATTTTAAGCATTGTCGAAGG+TGG | - | chr8_2:3307575-3307594 | Msa1227910:intron | 35.0% |
| CCGTGTATATACCATTTAAC+TGG | + | chr8_2:3307615-3307634 | None:intergenic | 35.0% | |
| CTATCTCCTGTTAACATAGT+AGG | - | chr8_2:3307688-3307707 | Msa1227910:intron | 35.0% | |
| GTATCCCATAATAAACACCA+TGG | - | chr8_2:3307792-3307811 | Msa1227910:intron | 35.0% | |
| TTGTATTATTCCAGCAACCT+TGG | + | chr8_2:3307851-3307870 | None:intergenic | 35.0% | |
| GTTGCTGGAATAATACAAGT+AGG | - | chr8_2:3307853-3307872 | Msa1227910:intron | 35.0% | |
| GAATAATACAAGTAGGTCTG+TGG | - | chr8_2:3307860-3307879 | Msa1227910:intron | 35.0% | |
| ATAGCCAGAAATCATGTTTC+TGG | + | chr8_2:3307895-3307914 | None:intergenic | 35.0% | |
| ATGCAAGGATCTTTCAGATT+TGG | + | chr8_2:3307950-3307969 | None:intergenic | 35.0% | |
| !! | CTCAGCTCATTGATTTGTTT+CGG | + | chr8_2:3308040-3308059 | None:intergenic | 35.0% |
| GAAACAAATCAATGAGCTGA+GGG | - | chr8_2:3308039-3308058 | Msa1227910:CDS | 35.0% | |
| ! | ATTTTATCTACTCTGTGCAG+TGG | - | chr8_2:3308086-3308105 | Msa1227910:CDS | 35.0% |
| ATCAAAGTCCAAGGGATTAT+TGG | - | chr8_2:3308137-3308156 | Msa1227910:CDS | 35.0% | |
| !!! | TTTTGTTTTCCTTTTGGGAG+AGG | + | chr8_2:3308236-3308255 | None:intergenic | 35.0% |
| ! | TCAGATGTTGTTATTGGTCA+AGG | - | chr8_2:3308298-3308317 | Msa1227910:intron | 35.0% |
| ! | CAGATGTTGTTATTGGTCAA+GGG | - | chr8_2:3308299-3308318 | Msa1227910:intron | 35.0% |
| ! | AGATGTTGTTATTGGTCAAG+GGG | - | chr8_2:3308300-3308319 | Msa1227910:intron | 35.0% |
| TCCTCACAATGTCAAAAAAC+AGG | + | chr8_2:3308375-3308394 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGACATTGTGAGGA+AGG | - | chr8_2:3308375-3308394 | Msa1227910:intron | 35.0% |
| AAAGACAACACATTACTCAG+AGG | + | chr8_2:3308484-3308503 | None:intergenic | 35.0% | |
| ! | GAGTAATGTGTTGTCTTTTG+TGG | - | chr8_2:3308486-3308505 | Msa1227910:CDS | 35.0% |
| !! | TGTTGTCTTTTGTGGTAATG+TGG | - | chr8_2:3308494-3308513 | Msa1227910:CDS | 35.0% |
| ! | TAGTGGACAAATGAGATTTC+GGG | - | chr8_2:3308568-3308587 | Msa1227910:intron | 35.0% |
| GTACTGCAAAGCAATTCATT+TGG | - | chr8_2:3308725-3308744 | Msa1227910:intron | 35.0% | |
| CTGGATATAATCCAAGTCAT+TGG | - | chr8_2:3309384-3309403 | Msa1227910:intron | 35.0% | |
| CTGTAAATTGATCATTCCAG+TGG | - | chr8_2:3309549-3309568 | Msa1227910:intron | 35.0% | |
| TGAAAAATCTCATGTTCCAC+TGG | + | chr8_2:3309568-3309587 | None:intergenic | 35.0% | |
| TGGATGTGTCATAAACAAAC+TGG | + | chr8_2:3309749-3309768 | None:intergenic | 35.0% | |
| ! | CAACGACATTTTTCATAAGC+AGG | + | chr8_2:3309833-3309852 | None:intergenic | 35.0% |
| ACAGAAGTTGCATCATTACA+GGG | + | chr8_2:3309864-3309883 | None:intergenic | 35.0% | |
| TACAGAAGTTGCATCATTAC+AGG | + | chr8_2:3309865-3309884 | None:intergenic | 35.0% | |
| AATGATGCAACTTCTGTATC+AGG | - | chr8_2:3309867-3309886 | Msa1227910:CDS | 35.0% | |
| CTGAATTTGATCCTATCAGA+TGG | - | chr8_2:3309890-3309909 | Msa1227910:intron | 35.0% | |
| ATTTGATCCTATCAGATGGT+TGG | - | chr8_2:3309894-3309913 | Msa1227910:intron | 35.0% | |
| ! | TTTCTGAAAATCTCCGAAAC+GGG | + | chr8_2:3309944-3309963 | None:intergenic | 35.0% |
| ! | CTTTCTGAAAATCTCCGAAA+CGG | + | chr8_2:3309945-3309964 | None:intergenic | 35.0% |
| GGAGACAAACTAAATGAAGA+TGG | + | chr8_2:3309973-3309992 | None:intergenic | 35.0% | |
| ! | CAGAGTTAGTAACATTTTCC+CGG | + | chr8_2:3310218-3310237 | None:intergenic | 35.0% |
| TCATAATGAACCAGAACATC+AGG | - | chr8_2:3310407-3310426 | Msa1227910:intron | 35.0% | |
| !! | TTCTGAAGAACAAGAGTATC+TGG | - | chr8_2:3310480-3310499 | Msa1227910:intron | 35.0% |
| !! | ACTCAAGATTAGGTTGAGTA+AGG | - | chr8_2:3310628-3310647 | Msa1227910:intron | 35.0% |
| !! | AATACCACAGCATGTTTTTG+TGG | - | chr8_2:3310824-3310843 | Msa1227910:intron | 35.0% |
| ! | TTTTCCACAAAAACATGCTG+TGG | + | chr8_2:3310831-3310850 | None:intergenic | 35.0% |
| !! | GTTATCAAGGCTTTGAGATA+GGG | + | chr8_2:3310908-3310927 | None:intergenic | 35.0% |
| !! | AGTTATCAAGGCTTTGAGAT+AGG | + | chr8_2:3310909-3310928 | None:intergenic | 35.0% |
| ! | CTATTTGGGGCATAATCAAA+AGG | - | chr8_2:3310941-3310960 | Msa1227910:intron | 35.0% |
| AACAACCAATCCAACTATCA+AGG | + | chr8_2:3310993-3311012 | None:intergenic | 35.0% | |
| !! | TTGATAGTTGGATTGGTTGT+TGG | - | chr8_2:3310992-3311011 | Msa1227910:intron | 35.0% |
| CCTATGGATTTCGTAGTTAA+AGG | + | chr8_2:3311021-3311040 | None:intergenic | 35.0% | |
| CCTTTAACTACGAAATCCAT+AGG | - | chr8_2:3311018-3311037 | Msa1227910:intron | 35.0% | |
| GTAATTATTTGCCCAATGAC+AGG | - | chr8_2:3311533-3311552 | Msa1227910:five_prime_UTR | 35.0% | |
| AAAACTGCTGTTGAAAGGAC+TGG | - | chr8_2:3306862-3306881 | Msa1227910:three_prime_UTR | 40.0% | |
| AAACTGCTGTTGAAAGGACT+GGG | - | chr8_2:3306863-3306882 | Msa1227910:three_prime_UTR | 40.0% | |
| ! | CTTAAGCGTGTTTTCCAATC+TGG | - | chr8_2:3306937-3306956 | Msa1227910:three_prime_UTR | 40.0% |
| CCATGTCATAATCACCAGAT+TGG | + | chr8_2:3306954-3306973 | None:intergenic | 40.0% | |
| CCAATCTGGTGATTATGACA+TGG | - | chr8_2:3306951-3306970 | Msa1227910:three_prime_UTR | 40.0% | |
| AAAGGGGAGAACGAATAGTA+GGG | + | chr8_2:3307079-3307098 | None:intergenic | 40.0% | |
| AAAAGGGGAGAACGAATAGT+AGG | + | chr8_2:3307080-3307099 | None:intergenic | 40.0% | |
| AAGCTGACTAAATGGATCTG+TGG | + | chr8_2:3307166-3307185 | None:intergenic | 40.0% | |
| GATTTGGGTCTTTAGGCATA+TGG | + | chr8_2:3307231-3307250 | None:intergenic | 40.0% | |
| CTAGGCATCTGAGAAAGATT+TGG | + | chr8_2:3307247-3307266 | None:intergenic | 40.0% | |
| GGTGAGAATTGTTTGAGAGA+TGG | + | chr8_2:3307315-3307334 | None:intergenic | 40.0% | |
| CAATTCTCACCTGACTAATG+GGG | - | chr8_2:3307324-3307343 | Msa1227910:CDS | 40.0% | |
| ATAGATTGTCCCCATTAGTC+AGG | + | chr8_2:3307336-3307355 | None:intergenic | 40.0% | |
| CACTGGTACACAAATGTAAC+TGG | + | chr8_2:3307420-3307439 | None:intergenic | 40.0% | |
| AAAATAGTCGCCAACAGAAG+AGG | - | chr8_2:3307815-3307834 | Msa1227910:intron | 40.0% | |
| TATTCCAGCAACCTTGGTTA+GGG | + | chr8_2:3307845-3307864 | None:intergenic | 40.0% | |
| TTATTCCAGCAACCTTGGTT+AGG | + | chr8_2:3307846-3307865 | None:intergenic | 40.0% | |
| GGATCCAGAAACATGATTTC+TGG | - | chr8_2:3307888-3307907 | Msa1227910:intron | 40.0% | |
| TCTGGCTATGAATAGTTACG+AGG | - | chr8_2:3307906-3307925 | Msa1227910:intron | 40.0% | |
| CAAGAATACGCTTCTGTTTC+TGG | + | chr8_2:3307973-3307992 | None:intergenic | 40.0% | |
| ! | GAAACAGAAGCGTATTCTTG+TGG | - | chr8_2:3307973-3307992 | Msa1227910:intron | 40.0% |
| !! | GAACATGTGTTTCTGGTATC+TGG | + | chr8_2:3308012-3308031 | None:intergenic | 40.0% |
| GGTTAGAGAACATGTGTTTC+TGG | + | chr8_2:3308019-3308038 | None:intergenic | 40.0% | |
| CGAAACAAATCAATGAGCTG+AGG | - | chr8_2:3308038-3308057 | Msa1227910:CDS | 40.0% | |
| TCTAAGGACATCAAAGTCCA+AGG | - | chr8_2:3308128-3308147 | Msa1227910:CDS | 40.0% | |
| CTAAGGACATCAAAGTCCAA+GGG | - | chr8_2:3308129-3308148 | Msa1227910:CDS | 40.0% | |
| !! | CCTTTTCAAGAGAAGCACAA+GGG | + | chr8_2:3308163-3308182 | None:intergenic | 40.0% |
| !! | ACCTTTTCAAGAGAAGCACA+AGG | + | chr8_2:3308164-3308183 | None:intergenic | 40.0% |
| ! | GATGTTGTTATTGGTCAAGG+GGG | - | chr8_2:3308301-3308320 | Msa1227910:intron | 40.0% |
| !! | ACAGTGATGTCGATTTGTCA+AGG | + | chr8_2:3308351-3308370 | None:intergenic | 40.0% |
| !!! | GCCTGTTTTTTGACATTGTG+AGG | - | chr8_2:3308371-3308390 | Msa1227910:intron | 40.0% |
| TTACAACTCTTTCACGCAGA+TGG | - | chr8_2:3308591-3308610 | Msa1227910:intron | 40.0% | |
| TACAACTCTTTCACGCAGAT+GGG | - | chr8_2:3308592-3308611 | Msa1227910:intron | 40.0% | |
| ACGCCAAGTGTCTTTCAAAA+TGG | - | chr8_2:3309275-3309294 | Msa1227910:intron | 40.0% | |
| GTCTTTCAAAATGGAAACGG+AGG | - | chr8_2:3309284-3309303 | Msa1227910:intron | 40.0% | |
| TGGTTAATTGTATCTCAGCC+TGG | - | chr8_2:3309346-3309365 | Msa1227910:intron | 40.0% | |
| GGGAATTGCAACATGTATAG+TGG | - | chr8_2:3309596-3309615 | Msa1227910:intron | 40.0% | |
| ATCCATAGTTGTGAGAACTG+TGG | - | chr8_2:3309764-3309783 | Msa1227910:intron | 40.0% | |
| !! | CTTCATTTAGTTTGTCTCCC+AGG | - | chr8_2:3309974-3309993 | Msa1227910:intron | 40.0% |
| TGTGGGAATATTGACAACCT+GGG | + | chr8_2:3309994-3310013 | None:intergenic | 40.0% | |
| TTGTGGGAATATTGACAACC+TGG | + | chr8_2:3309995-3310014 | None:intergenic | 40.0% | |
| TAAAGTAAGCAGTCTCGTCT+GGG | + | chr8_2:3310182-3310201 | None:intergenic | 40.0% | |
| TGTTACTAACTCTGTCGTCA+TGG | - | chr8_2:3310224-3310243 | Msa1227910:intron | 40.0% | |
| !! | AACAAGAGTATCTGGCTGAT+GGG | - | chr8_2:3310488-3310507 | Msa1227910:intron | 40.0% |
| TTTGACACGGTTTCATTGTC+AGG | - | chr8_2:3310562-3310581 | Msa1227910:intron | 40.0% | |
| GACGAGGACTTTCAGTTTAT+CGG | - | chr8_2:3310664-3310683 | Msa1227910:intron | 40.0% | |
| ACGAGGACTTTCAGTTTATC+GGG | - | chr8_2:3310665-3310684 | Msa1227910:intron | 40.0% | |
| GTTGTGGGAAGAATACATCT+TGG | - | chr8_2:3310743-3310762 | Msa1227910:intron | 40.0% | |
| CAACTATCAAGGCCATAACA+TGG | + | chr8_2:3310982-3311001 | None:intergenic | 40.0% | |
| ! | CATGTTATGGCCTTGATAGT+TGG | - | chr8_2:3310980-3310999 | Msa1227910:intron | 40.0% |
| ! | TATGGCCTTGATAGTTGGAT+TGG | - | chr8_2:3310985-3311004 | Msa1227910:intron | 40.0% |
| !! | TCGGTGTTATATGTTGCAGA+AGG | + | chr8_2:3311343-3311362 | None:intergenic | 40.0% |
| TAAAGATAATGTCCCCTCCA+GGG | + | chr8_2:3311375-3311394 | None:intergenic | 40.0% | |
| TGGAGGGGACATTATCTTTA+CGG | - | chr8_2:3311375-3311394 | Msa1227910:intron | 40.0% | |
| ! | CATTTGCTAGTTAGTCACCA+AGG | + | chr8_2:3311602-3311621 | None:intergenic | 40.0% |
| ! | CTTGGTGACTAACTAGCAAA+TGG | - | chr8_2:3311600-3311619 | Msa1227910:five_prime_UTR | 40.0% |
| AACTGCTGTTGAAAGGACTG+GGG | - | chr8_2:3306864-3306883 | Msa1227910:three_prime_UTR | 45.0% | |
| ! | TTTTGGCCATCCAGTGTTCA+AGG | - | chr8_2:3306909-3306928 | Msa1227910:three_prime_UTR | 45.0% |
| GTGAATCCTTGAACACTGGA+TGG | + | chr8_2:3306918-3306937 | None:intergenic | 45.0% | |
| TAAATGGATCTGTGGCACTG+GGG | + | chr8_2:3307158-3307177 | None:intergenic | 45.0% | |
| CTAAATGGATCTGTGGCACT+GGG | + | chr8_2:3307159-3307178 | None:intergenic | 45.0% | |
| ACTAAATGGATCTGTGGCAC+TGG | + | chr8_2:3307160-3307179 | None:intergenic | 45.0% | |
| GTCTTTAGGCATATGGAGGT+TGG | + | chr8_2:3307224-3307243 | None:intergenic | 45.0% | |
| TTGGGTCTTTAGGCATATGG+AGG | + | chr8_2:3307228-3307247 | None:intergenic | 45.0% | |
| GTTTGAGAGGTGAGAGATCT+AGG | + | chr8_2:3307265-3307284 | None:intergenic | 45.0% | |
| ! | CTGTTGGCGACTATTTTCCA+TGG | + | chr8_2:3307812-3307831 | None:intergenic | 45.0% |
| ! | TTAGGGTACTCCTCTTCTGT+TGG | + | chr8_2:3307828-3307847 | None:intergenic | 45.0% |
| !! | ATGTGTTTCTGGTATCTGGC+TGG | + | chr8_2:3308008-3308027 | None:intergenic | 45.0% |
| CCCTTGTGCTTCTCTTGAAA+AGG | - | chr8_2:3308160-3308179 | Msa1227910:CDS | 45.0% | |
| TCCATATAGCCTCTCCCAAA+AGG | - | chr8_2:3308224-3308243 | Msa1227910:CDS | 45.0% | |
| !! | TCCTTTTGGGAGAGGCTATA+TGG | + | chr8_2:3308228-3308247 | None:intergenic | 45.0% |
| ACTAGTGCATGGAAGATGTG+TGG | - | chr8_2:3308325-3308344 | Msa1227910:intron | 45.0% | |
| AAGCTTACCTGTATGCTTCC+TGG | + | chr8_2:3308626-3308645 | None:intergenic | 45.0% | |
| CAGTAGTTCAGGGACATTGA+TGG | - | chr8_2:3308890-3308909 | Msa1227910:intron | 45.0% | |
| TGACTATAGCAGCTGCTTCT+TGG | + | chr8_2:3309251-3309270 | None:intergenic | 45.0% | |
| AGAAGCAGCTGCTATAGTCA+TGG | - | chr8_2:3309251-3309270 | Msa1227910:intron | 45.0% | |
| CAGCTAAATACATGTCGACC+AGG | + | chr8_2:3309367-3309386 | None:intergenic | 45.0% | |
| CTGGTCGACATGTATTTAGC+TGG | - | chr8_2:3309365-3309384 | Msa1227910:intron | 45.0% | |
| TGCAACATGTATAGTGGCAC+AGG | - | chr8_2:3309602-3309621 | Msa1227910:intron | 45.0% | |
| GCAACATGTATAGTGGCACA+GGG | - | chr8_2:3309603-3309622 | Msa1227910:intron | 45.0% | |
| GTCCACAGTTCTCACAACTA+TGG | + | chr8_2:3309769-3309788 | None:intergenic | 45.0% | |
| GATCAGTCAGAGAGAAAAGC+AGG | + | chr8_2:3309791-3309810 | None:intergenic | 45.0% | |
| TCCTATCAGATGGTTGGACA+AGG | - | chr8_2:3309900-3309919 | Msa1227910:intron | 45.0% | |
| ! | ACGACGTTCTCAGTTTGTTC+AGG | - | chr8_2:3310029-3310048 | Msa1227910:CDS | 45.0% |
| CTAAAGTAAGCAGTCTCGTC+TGG | + | chr8_2:3310183-3310202 | None:intergenic | 45.0% | |
| CCAGAGAATACCTGATGTTC+TGG | + | chr8_2:3310420-3310439 | None:intergenic | 45.0% | |
| CCAGAACATCAGGTATTCTC+TGG | - | chr8_2:3310417-3310436 | Msa1227910:intron | 45.0% | |
| !! | GAACAAGAGTATCTGGCTGA+TGG | - | chr8_2:3310487-3310506 | Msa1227910:intron | 45.0% |
| !! | ACAAGAGTATCTGGCTGATG+GGG | - | chr8_2:3310489-3310508 | Msa1227910:intron | 45.0% |
| ! | CGGGCCTTGTATTAGTTTCT+AGG | - | chr8_2:3310684-3310703 | Msa1227910:intron | 45.0% |
| CATGCTGATCACAAACAACC+AGG | + | chr8_2:3311190-3311209 | None:intergenic | 45.0% | |
| CTGGTTGTTTGTGATCAGCA+TGG | - | chr8_2:3311188-3311207 | Msa1227910:intron | 45.0% | |
| GTAAAGATAATGTCCCCTCC+AGG | + | chr8_2:3311376-3311395 | None:intergenic | 45.0% | |
| GTCACCAAGGTCAGTCAATT+GGG | + | chr8_2:3311589-3311608 | None:intergenic | 45.0% | |
| AGTCACCAAGGTCAGTCAAT+TGG | + | chr8_2:3311590-3311609 | None:intergenic | 45.0% | |
| !!! | ATTTGAAAATATAAATTTTT+TGG | - | chr8_2:3306802-3306821 | Msa1227910:three_prime_UTR | 5.0% |
| !!! | TTAGTATATAAATATTTTTT+TGG | - | chr8_2:3311254-3311273 | Msa1227910:intron | 5.0% |
| ACTGCTGTTGAAAGGACTGG+GGG | - | chr8_2:3306865-3306884 | Msa1227910:three_prime_UTR | 50.0% | |
| !! | GAAGAGGAGTACCCTAACCA+AGG | - | chr8_2:3307831-3307850 | Msa1227910:intron | 50.0% |
| AGTACCCTAACCAAGGTTGC+TGG | - | chr8_2:3307838-3307857 | Msa1227910:intron | 50.0% | |
| ACAAGTAGGTCTGTGGCATC+TGG | - | chr8_2:3307867-3307886 | Msa1227910:intron | 50.0% | |
| !! | CGCTTCTGTTTCTGGATGCA+AGG | + | chr8_2:3307965-3307984 | None:intergenic | 50.0% |
| CACAAGGGCCAATAATCCCT+TGG | + | chr8_2:3308148-3308167 | None:intergenic | 50.0% | |
| ! | GTGGATTGCATTGTAGCGTC+TGG | + | chr8_2:3308406-3308425 | None:intergenic | 50.0% |
| GCCTTGTCCAACCATCTGAT+AGG | + | chr8_2:3309904-3309923 | None:intergenic | 50.0% | |
| ATGGTTCAACCATTGCCCAG+TGG | - | chr8_2:3310370-3310389 | Msa1227910:intron | 50.0% | |
| AAAGTCCTCGTCGAAGCTTC+AGG | + | chr8_2:3310656-3310675 | None:intergenic | 50.0% | |
| TGATCACAAACAACCAGGCG+AGG | + | chr8_2:3311185-3311204 | None:intergenic | 50.0% | |
| GGCATTCATGCACATTGTGC+AGG | - | chr8_2:3311291-3311310 | Msa1227910:intron | 50.0% | |
| !! | GGCATATGGAGGTTGGTGAC+AGG | + | chr8_2:3307217-3307236 | None:intergenic | 55.0% |
| GAGCTGAGGGAGAAGTTGAC+TGG | - | chr8_2:3308052-3308071 | Msa1227910:CDS | 55.0% | |
| !! | GTCAAGGGGGTACTAGTGCA+TGG | - | chr8_2:3308314-3308333 | Msa1227910:intron | 55.0% |
| !! | CTTTCACGCAGATGGGTTGC+TGG | - | chr8_2:3308599-3308618 | Msa1227910:intron | 55.0% |
| ! | TGCTGGACCAGGAAGCATAC+AGG | - | chr8_2:3308616-3308635 | Msa1227910:intron | 55.0% |
| ATGGAAACGGAGGTGAGTGC+TGG | - | chr8_2:3309294-3309313 | Msa1227910:intron | 55.0% | |
| ACATCGAGAAGAGCAGGCTC+AGG | + | chr8_2:3310288-3310307 | None:intergenic | 55.0% | |
| TCTCGATGTCGCAGCCATTG+CGG | - | chr8_2:3310299-3310318 | Msa1227910:CDS | 55.0% | |
| ! | GGCTGACAGGGTTCTGCTTT+TGG | - | chr8_2:3310320-3310339 | Msa1227910:CDS | 55.0% |
| ATATCCAGCCTTGCGCCACT+GGG | + | chr8_2:3310388-3310407 | None:intergenic | 55.0% | |
| TTGTGATCAGCATGGCTCCC+AGG | - | chr8_2:3311196-3311215 | Msa1227910:intron | 55.0% | |
| AACACCGAAGCTTCACTCCC+TGG | - | chr8_2:3311355-3311374 | Msa1227910:intron | 55.0% | |
| ACGGCCCAATTGACTGACCT+TGG | - | chr8_2:3311582-3311601 | Msa1227910:five_prime_UTR | 55.0% | |
| ! | ATGGATCTGTGGCACTGGGG+AGG | + | chr8_2:3307155-3307174 | None:intergenic | 60.0% |
| GAGCAGGCTCAGGACCAGAA+TGG | + | chr8_2:3310278-3310297 | None:intergenic | 60.0% | |
| GCTGCGACATCGAGAAGAGC+AGG | + | chr8_2:3310294-3310313 | None:intergenic | 60.0% | |
| CAGAACCCTGTCAGCCGCAA+TGG | + | chr8_2:3310316-3310335 | None:intergenic | 60.0% | |
| AACCATTGCCCAGTGGCGCA+AGG | - | chr8_2:3310377-3310396 | Msa1227910:intron | 60.0% | |
| GATATCCAGCCTTGCGCCAC+TGG | + | chr8_2:3310389-3310408 | None:intergenic | 60.0% | |
| AGGTGCCTGAAGCTTCGACG+AGG | - | chr8_2:3310648-3310667 | Msa1227910:intron | 60.0% | |
| GAGATTTCCTGTGCCTCGCC+TGG | - | chr8_2:3311169-3311188 | Msa1227910:intron | 60.0% | |
| CAAACAACCAGGCGAGGCAC+AGG | + | chr8_2:3311179-3311198 | None:intergenic | 60.0% | |
| ACCGAAGCTTCACTCCCTGG+AGG | - | chr8_2:3311358-3311377 | Msa1227910:intron | 60.0% | |
| CCCTCCAGGGAGTGAAGCTT+CGG | + | chr8_2:3311362-3311381 | None:intergenic | 60.0% | |
| CCGAAGCTTCACTCCCTGGA+GGG | - | chr8_2:3311359-3311378 | Msa1227910:intron | 60.0% | |
| CGAAGCTTCACTCCCTGGAG+GGG | - | chr8_2:3311360-3311379 | Msa1227910:intron | 60.0% | |
| !! | CGCAGATGGGTTGCTGGACC+AGG | - | chr8_2:3308605-3308624 | Msa1227910:intron | 65.0% |
| TCGCAGCCATTGCGGCTGAC+AGG | - | chr8_2:3310307-3310326 | Msa1227910:CDS | 65.0% | |
| CGCAGCCATTGCGGCTGACA+GGG | - | chr8_2:3310308-3310327 | Msa1227910:CDS | 65.0% | |
| AGCCTTGCGCCACTGGGCAA+TGG | + | chr8_2:3310382-3310401 | None:intergenic | 65.0% | |
| ATTGCCCAGTGGCGCAAGGC+TGG | - | chr8_2:3310381-3310400 | Msa1227910:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 3306720 | 3311743 | 3306720 | ID=Msa1227910;Name=Msa1227910 |
| chr8_2 | mRNA | 3306720 | 3311743 | 3306720 | ID=Msa1227910-mRNA-1;Parent=Msa1227910;Name=Msa1227910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=250|0.88|0.8|1|0.77|0.8|10|290|364 |
| chr8_2 | exon | 3306720 | 3307150 | 3306720 | ID=Msa1227910-mRNA-1:exon:1047;Parent=Msa1227910-mRNA-1 |
| chr8_2 | exon | 3307246 | 3307350 | 3307246 | ID=Msa1227910-mRNA-1:exon:1046;Parent=Msa1227910-mRNA-1 |
| chr8_2 | exon | 3308035 | 3308211 | 3308035 | ID=Msa1227910-mRNA-1:exon:1045;Parent=Msa1227910-mRNA-1 |
| chr8_2 | exon | 3308218 | 3308298 | 3308218 | ID=Msa1227910-mRNA-1:exon:1044;Parent=Msa1227910-mRNA-1 |
| chr8_2 | exon | 3308413 | 3308574 | 3308413 | ID=Msa1227910-mRNA-1:exon:1043;Parent=Msa1227910-mRNA-1 |
| chr8_2 | exon | 3309158 | 3309235 | 3309158 | ID=Msa1227910-mRNA-1:exon:1042;Parent=Msa1227910-mRNA-1 |
| chr8_2 | exon | 3309826 | 3309907 | 3309826 | ID=Msa1227910-mRNA-1:exon:1041;Parent=Msa1227910-mRNA-1 |
| chr8_2 | exon | 3310005 | 3310180 | 3310005 | ID=Msa1227910-mRNA-1:exon:1040;Parent=Msa1227910-mRNA-1 |
| chr8_2 | exon | 3310282 | 3310357 | 3310282 | ID=Msa1227910-mRNA-1:exon:1039;Parent=Msa1227910-mRNA-1 |
| chr8_2 | exon | 3311477 | 3311743 | 3311477 | ID=Msa1227910-mRNA-1:exon:1038;Parent=Msa1227910-mRNA-1 |
| chr8_2 | five_prime_UTR | 3311494 | 3311743 | 3311494 | ID=Msa1227910-mRNA-1:five_prime_utr;Parent=Msa1227910-mRNA-1 |
| chr8_2 | CDS | 3311477 | 3311493 | 3311477 | ID=Msa1227910-mRNA-1:cds;Parent=Msa1227910-mRNA-1 |
| chr8_2 | CDS | 3310282 | 3310357 | 3310282 | ID=Msa1227910-mRNA-1:cds;Parent=Msa1227910-mRNA-1 |
| chr8_2 | CDS | 3310005 | 3310180 | 3310005 | ID=Msa1227910-mRNA-1:cds;Parent=Msa1227910-mRNA-1 |
| chr8_2 | CDS | 3309826 | 3309907 | 3309826 | ID=Msa1227910-mRNA-1:cds;Parent=Msa1227910-mRNA-1 |
| chr8_2 | CDS | 3309158 | 3309235 | 3309158 | ID=Msa1227910-mRNA-1:cds;Parent=Msa1227910-mRNA-1 |
| chr8_2 | CDS | 3308413 | 3308574 | 3308413 | ID=Msa1227910-mRNA-1:cds;Parent=Msa1227910-mRNA-1 |
| chr8_2 | CDS | 3308218 | 3308298 | 3308218 | ID=Msa1227910-mRNA-1:cds;Parent=Msa1227910-mRNA-1 |
| chr8_2 | CDS | 3308035 | 3308211 | 3308035 | ID=Msa1227910-mRNA-1:cds;Parent=Msa1227910-mRNA-1 |
| chr8_2 | CDS | 3307246 | 3307350 | 3307246 | ID=Msa1227910-mRNA-1:cds;Parent=Msa1227910-mRNA-1 |
| chr8_2 | CDS | 3307010 | 3307150 | 3307010 | ID=Msa1227910-mRNA-1:cds;Parent=Msa1227910-mRNA-1 |
| chr8_2 | three_prime_UTR | 3306720 | 3307009 | 3306720 | ID=Msa1227910-mRNA-1:three_prime_utr;Parent=Msa1227910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
