AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1231940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1231940 MtrunA17_Chr4g0054981 95.135 370 7 1 1 370 1 359 0.0 703
Msa1231940 MtrunA17_Chr4g0054981 95.192 104 4 1 371 473 452 555 3.05e-63 214
Msa1231940 MtrunA17_Chr5g0400241 69.393 379 92 6 1 372 1 362 3.64e-168 484
Msa1231940 MtrunA17_Chr5g0400241 60.000 90 26 1 371 460 452 531 3.64e-26 111
Msa1231940 MtrunA17_Chr2g0324891 35.260 173 94 3 205 372 53 212 2.66e-20 92.8
Msa1231940 MtrunA17_Chr2g0324891 38.462 91 51 1 376 466 337 422 1.15e-11 66.6
Msa1231940 MtrunA17_Chr4g0040481 65.455 55 19 0 318 372 155 209 1.31e-19 90.9
Msa1231940 MtrunA17_Chr4g0040481 46.809 94 45 3 377 466 329 421 1.41e-14 75.5
Msa1231940 MtrunA17_Chr3g0123131 37.302 126 75 2 12 134 11 135 8.54e-18 86.3
Msa1231940 MtrunA17_Chr3g0123131 58.491 53 22 0 320 372 198 250 8.39e-12 67.4
Msa1231940 MtrunA17_Chr1g0161431 36.090 133 81 2 8 137 5 136 1.03e-16 82.8
Msa1231940 MtrunA17_Chr1g0161431 64.706 51 18 0 320 370 199 249 5.16e-14 74.3
Msa1231940 MtrunA17_Chr4g0074401 37.302 126 75 2 12 134 15 139 2.42e-16 81.6
Msa1231940 MtrunA17_Chr4g0074401 61.404 57 22 0 316 372 198 254 6.10e-15 77.4
Msa1231940 MtrunA17_Chr4g0074411 37.097 124 74 2 14 134 18 140 9.41e-16 79.7
Msa1231940 MtrunA17_Chr4g0074411 60.714 56 22 0 317 372 197 252 1.17e-13 73.2
Msa1231940 MtrunA17_Chr2g0304841 60.714 56 22 0 317 372 209 264 1.97e-15 79.0
Msa1231940 MtrunA17_Chr2g0304841 32.258 124 80 2 14 134 18 140 8.86e-13 70.5
Msa1231940 MtrunA17_Chr4g0067981 37.008 127 76 2 14 137 31 156 5.64e-15 77.4
Msa1231940 MtrunA17_Chr4g0067981 64.151 53 19 0 320 372 214 266 2.46e-14 75.5
Msa1231940 MtrunA17_Chr2g0294911 36.719 128 77 2 14 138 29 155 6.08e-15 77.4
Msa1231940 MtrunA17_Chr2g0294911 54.717 53 24 0 320 372 210 262 2.78e-12 68.9
Msa1231940 MtrunA17_Chr3g0137101 62.963 54 20 0 319 372 196 249 9.28e-15 76.6
Msa1231940 MtrunA17_Chr3g0137101 34.677 124 77 2 14 134 8 130 9.11e-14 73.6
Msa1231940 MtrunA17_Chr8g0376881 35.484 124 76 2 14 134 25 147 2.14e-14 75.5
Msa1231940 MtrunA17_Chr8g0376881 62.264 53 20 0 320 372 208 260 1.43e-12 69.7
Msa1231940 MtrunA17_Chr4g0074421 60.000 55 22 0 317 371 129 183 2.48e-14 71.6
Msa1231940 MtrunA17_Chr3g0127941 31.034 145 91 4 8 144 44 187 3.07e-14 75.1
Msa1231940 MtrunA17_Chr3g0134481 36.885 122 73 2 14 132 8 128 6.88e-14 70.1
Msa1231940 MtrunA17_Chr3g0134481 57.778 45 19 0 326 370 137 181 3.70e-12 65.1
Msa1231940 MtrunA17_Chr7g0255711 60.784 51 20 0 320 370 90 140 1.52e-13 71.2
Msa1231940 MtrunA17_Chr4g0031961 60.784 51 20 0 320 370 130 180 1.55e-13 71.2
Msa1231940 MtrunA17_Chr7g0276361 29.885 174 110 3 15 177 11 183 2.42e-13 72.4
Msa1231940 MtrunA17_Chr1g0149841 59.615 52 21 0 319 370 189 240 1.58e-12 69.3
Msa1231940 MtrunA17_Chr1g0149841 33.065 124 79 2 14 134 5 127 8.77e-12 67.0
Msa1231940 MtrunA17_Chr3g0134461 56.140 57 24 1 314 370 137 192 2.44e-12 65.9
Msa1231940 MtrunA17_Chr3g0134461 29.839 124 84 1 14 134 8 131 4.80e-12 65.1
Msa1231940 MtrunA17_Chr4g0009851 50.943 53 26 0 320 372 168 220 7.08e-12 66.2
Msa1231940 MtrunA17_Chr1g0149851 33.871 124 78 2 14 134 5 127 7.25e-12 67.4
Msa1231940 MtrunA17_Chr8g0345901 30.827 133 83 3 10 134 26 157 2.70e-11 65.9
Msa1231940 MtrunA17_Chr4g0009901 45.588 68 37 0 305 372 152 219 4.61e-11 63.5
Msa1231940 MtrunA17_Chr7g0275401 30.400 125 83 2 13 134 4 127 9.38e-11 62.8
Msa1231940 MtrunA17_Chr4g0009981 49.057 53 27 0 320 372 115 167 9.90e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1231940 AT4G18020.3 46.113 566 174 17 1 470 1 531 7.89e-117 353
Msa1231940 AT4G18020.2 46.113 566 174 17 1 470 1 531 7.89e-117 353
Msa1231940 AT4G18020.1 46.113 566 174 17 1 470 1 531 7.89e-117 353
Msa1231940 AT4G18020.6 46.113 566 174 17 1 470 1 531 7.89e-117 353
Msa1231940 AT4G18020.9 46.113 566 174 17 1 470 1 531 7.89e-117 353
Msa1231940 AT4G18020.8 53.947 380 130 11 1 370 1 345 2.60e-109 333
Msa1231940 AT4G18020.11 53.947 380 130 11 1 370 1 345 2.60e-109 333
Msa1231940 AT4G18020.4 53.947 380 130 11 1 370 1 345 2.60e-109 333
Msa1231940 AT4G18020.5 53.947 380 130 11 1 370 1 345 2.60e-109 333
Msa1231940 AT4G18020.10 53.947 380 130 11 1 370 1 345 2.60e-109 333
Msa1231940 AT4G18020.7 53.947 380 130 11 1 370 1 345 2.60e-109 333
Msa1231940 AT2G20570.1 42.969 128 67 3 249 372 79 204 2.78e-20 93.2
Msa1231940 AT2G20570.2 36.527 167 84 4 208 372 74 220 4.77e-20 92.8
Msa1231940 AT5G44190.2 74.074 54 14 0 319 372 145 198 9.73e-20 90.9
Msa1231940 AT5G44190.1 74.074 54 14 0 319 372 145 198 1.02e-19 91.3
Msa1231940 AT5G58080.1 53.247 77 20 1 317 377 190 266 8.88e-17 83.6
Msa1231940 AT5G58080.1 33.333 123 79 2 14 134 14 135 5.54e-11 65.5
Msa1231940 AT1G49190.2 23.767 446 251 15 14 371 30 474 1.35e-16 82.8
Msa1231940 AT3G16857.1 37.097 124 74 2 14 134 33 155 1.25e-15 80.1
Msa1231940 AT3G16857.1 57.377 61 26 0 312 372 228 288 7.81e-14 74.3
Msa1231940 AT5G24470.1 34.307 137 81 4 6 134 36 171 1.25e-15 79.7
Msa1231940 AT3G16857.2 37.097 124 74 2 14 134 33 155 1.25e-15 80.1
Msa1231940 AT3G16857.2 57.377 61 26 0 312 372 228 288 6.93e-14 74.7
Msa1231940 AT5G49240.1 28.497 193 131 4 13 201 37 226 4.30e-15 76.3
Msa1231940 AT5G49240.1 53.846 52 24 0 320 371 222 273 1.69e-11 65.5
Msa1231940 AT2G40970.1 46.835 79 42 0 292 370 76 154 7.79e-15 74.7
Msa1231940 AT2G01760.3 62.963 54 20 0 317 370 131 184 1.09e-14 75.5
Msa1231940 AT3G10760.1 43.678 87 49 0 286 372 70 156 1.64e-14 75.1
Msa1231940 AT2G01760.1 62.963 54 20 0 317 370 196 249 2.16e-14 75.1
Msa1231940 AT2G01760.1 31.200 125 81 2 14 134 7 130 1.03e-13 73.2
Msa1231940 AT2G25180.1 69.231 52 16 0 319 370 193 244 2.21e-14 75.9
Msa1231940 AT2G25180.1 32.090 134 87 2 7 137 6 138 1.46e-13 73.6
Msa1231940 AT2G01760.2 62.963 54 20 0 317 370 224 277 2.84e-14 75.1
Msa1231940 AT5G59570.2 58.491 53 22 0 320 372 140 192 3.91e-14 73.6
Msa1231940 AT5G59570.1 58.491 53 22 0 320 372 140 192 3.91e-14 73.6
Msa1231940 AT3G16857.3 57.377 61 26 0 312 372 158 218 5.66e-14 74.7
Msa1231940 AT5G05090.1 60.784 51 20 0 320 370 80 130 6.49e-14 72.4
Msa1231940 AT3G46640.2 60.784 51 20 0 320 370 143 193 9.00e-14 72.8
Msa1231940 AT3G46640.1 60.784 51 20 0 320 370 143 193 9.00e-14 72.8
Msa1231940 AT3G46640.3 60.784 51 20 0 320 370 143 193 1.26e-13 72.4
Msa1231940 AT4G31920.1 61.538 52 20 0 319 370 181 232 5.40e-13 71.6
Msa1231940 AT4G31920.1 34.426 122 76 2 14 132 13 133 5.65e-13 71.6
Msa1231940 AT1G67710.1 33.600 125 79 2 15 136 8 131 6.25e-13 71.2
Msa1231940 AT5G61380.1 29.457 129 86 2 18 141 19 147 6.77e-13 71.2
Msa1231940 AT1G49190.1 28.455 123 86 1 14 134 30 152 2.84e-12 68.9
Msa1231940 AT5G60100.7 29.891 184 110 4 16 184 62 241 1.88e-11 66.2
Msa1231940 AT5G60100.6 29.891 184 110 4 16 184 62 241 1.88e-11 66.2
Msa1231940 AT5G60100.4 29.891 184 110 4 16 184 62 241 1.88e-11 66.2
Msa1231940 AT2G46790.3 28.986 138 89 4 5 134 22 158 2.39e-11 66.2
Msa1231940 AT2G46790.1 28.986 138 89 4 5 134 22 158 2.41e-11 66.2
Msa1231940 AT5G60100.2 30.000 130 86 1 16 140 62 191 2.68e-11 66.2
Msa1231940 AT5G60100.5 29.891 184 110 4 16 184 62 241 2.94e-11 65.9
Msa1231940 AT5G60100.3 29.891 184 110 4 16 184 62 241 2.94e-11 65.9
Msa1231940 AT5G60100.1 29.891 184 110 4 16 184 62 241 2.94e-11 65.9

Find 178 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTATTCCTTCTCGAATAT+TGG 0.160903 8_2:+8232712 Msa1231940:CDS
TGACAAACTTCTATACAAAA+AGG 0.249590 8_2:+8234384 Msa1231940:three_prime_UTR
CCTAATATGGCTTAACAAAA+TGG 0.269270 8_2:-8234500 None:intergenic
GGGACACCGGTTAGGCTACT+TGG 0.285379 8_2:+8234769 Msa1231940:three_prime_UTR
GGTTGTAAATGTGGTACTTT+TGG 0.286805 8_2:+8234864 Msa1231940:three_prime_UTR
CTTTATTAATAATGCAGTTA+AGG 0.315520 8_2:+8229022 Msa1231940:five_prime_UTR
TAATATATATAGCCTTTCTT+TGG 0.321991 8_2:-8228738 None:intergenic
TTTATTAATAATGCAGTTAA+GGG 0.322433 8_2:+8229023 Msa1231940:five_prime_UTR
TGACACAAACATGTTGAAAT+TGG 0.323107 8_2:-8234630 None:intergenic
TTCCCACCTGTTTCAATTGT+GGG 0.326260 8_2:-8232104 None:intergenic
TGTTGGTGTGATGTGGGAGT+GGG 0.345142 8_2:-8234527 None:intergenic
CTCAAACAGGCGTTCAATGC+TGG 0.345997 8_2:+8231913 Msa1231940:intron
ACCGGGCAGCCCCATGCATC+TGG 0.346448 8_2:-8233332 None:intergenic
GGGAAGCATAAAACAATGAT+AGG 0.347492 8_2:+8234885 Msa1231940:three_prime_UTR
TTACCTCCACTATGGCTATA+TGG 0.348408 8_2:-8230882 None:intergenic
AGGACAAGCTCAGAAATATT+TGG 0.363283 8_2:+8231792 Msa1231940:CDS
AACAAAATCTGAAGCTACTT+TGG 0.370612 8_2:+8232293 Msa1231940:CDS
TTGTTGGTGTGATGTGGGAG+TGG 0.371355 8_2:-8234528 None:intergenic
ATGCTACCCCTCGTTCCTTC+AGG 0.379815 8_2:-8228835 None:intergenic
TTTCCATTCTTGTAAATCAT+TGG 0.382036 8_2:-8229898 None:intergenic
GAGAAGAACCTTGAGTCCTT+TGG 0.384890 8_2:-8229928 None:intergenic
TTCCCAGTCAATTTACTACT+TGG 0.385635 8_2:-8234463 None:intergenic
TAATGTGGCAAGCCATCTTC+AGG 0.386166 8_2:+8232766 Msa1231940:CDS
CTTCCCACCTGTTTCAATTG+TGG 0.388788 8_2:-8232105 None:intergenic
AGAAGAACCTTGAGTCCTTT+GGG 0.389684 8_2:-8229927 None:intergenic
TTGACTGGGAATAGGAGAAC+TGG 0.392159 8_2:+8234475 Msa1231940:three_prime_UTR
CTACTTGGGCGGTTGAGAAT+TGG 0.394211 8_2:+8234784 Msa1231940:three_prime_UTR
CTCAAGCTTTGTTCTTATCT+CGG 0.396925 8_2:-8229976 None:intergenic
GAAGGAGGTTTGAGGCCTAT+TGG 0.403034 8_2:-8234250 None:intergenic
TTTGGTTGTAAATGTCAATA+GGG 0.406128 8_2:-8234346 None:intergenic
GTTGGTGTGATGTGGGAGTG+GGG 0.407671 8_2:-8234526 None:intergenic
ATGGCTATATGGAAATCTTC+AGG 0.409437 8_2:-8230871 None:intergenic
TTGTTTAGAACCTTCACATT+TGG 0.411730 8_2:-8232381 None:intergenic
CTTGAGGCCATGGACTATAA+TGG 0.415851 8_2:+8229993 Msa1231940:CDS
CCATGGCTACCTTTGCCAAT+AGG 0.417258 8_2:+8234235 Msa1231940:CDS
GTAGTAAATTGACTGGGAAT+AGG 0.424748 8_2:+8234467 Msa1231940:three_prime_UTR
TTGTATGAAGTGGTTGTTGT+TGG 0.433847 8_2:-8234544 None:intergenic
TTGGTGTGATGTGGGAGTGG+GGG 0.434929 8_2:-8234525 None:intergenic
TGTTTCAATTGTGGGGTTGA+AGG 0.435514 8_2:-8232096 None:intergenic
TAGTTCCTTTGACGATTATC+CGG 0.439585 8_2:+8233617 Msa1231940:CDS
ATGAAAGTTTACCTCCACTA+TGG 0.446919 8_2:-8230890 None:intergenic
TTCAACCCCACAATTGAAAC+AGG 0.454533 8_2:+8232098 Msa1231940:CDS
AACCGCCCAAGTAGCCTAAC+CGG 0.455509 8_2:-8234775 None:intergenic
TGGGTGTGGGAATGTAATAA+TGG 0.456532 8_2:+8234932 Msa1231940:three_prime_UTR
ATTGTAGCTTGGAGGGATGC+TGG 0.456927 8_2:-8234314 None:intergenic
AATGTGAGATAAAAGCTAAT+CGG 0.462021 8_2:+8232454 Msa1231940:CDS
TGGTTGTTGTTGGTGTGATG+TGG 0.464028 8_2:-8234534 None:intergenic
AAGGAGCAGGATAATGTTCA+TGG 0.465809 8_2:-8232077 None:intergenic
CTGAGCTTGTCCTCAGAGAG+TGG 0.472308 8_2:-8231782 None:intergenic
TCAAACAGGCGTTCAATGCT+GGG 0.475462 8_2:+8231914 Msa1231940:intron
GTGGGAAGATTACTTGATGA+TGG 0.476661 8_2:+8232120 Msa1231940:CDS
TGCATTATTAATAAAGAGAA+AGG 0.479120 8_2:-8229015 None:intergenic
AAGAACAAAGCTTGAGGCCA+TGG 0.479516 8_2:+8229983 Msa1231940:CDS
GAGGCTACAGATTCCTTGAC+AGG 0.481302 8_2:-8231964 None:intergenic
TCTACTTGGTTGTTGCATCA+AGG 0.481304 8_2:-8234569 None:intergenic
CTGCCAATGATTTACAAGAA+TGG 0.481928 8_2:+8229895 Msa1231940:CDS
TAGGAATAGCAAGGAGGTTG+AGG 0.482742 8_2:-8233365 None:intergenic
GTTGTAAATAGATGCTGATA+TGG 0.482870 8_2:+8234843 Msa1231940:three_prime_UTR
GGTTGTTGTTGGTGTGATGT+GGG 0.483699 8_2:-8234533 None:intergenic
AATTGTGGGGTTGAAGGAGC+AGG 0.486485 8_2:-8232090 None:intergenic
GTTCCAAGTAGTAAATTGAC+TGG 0.486590 8_2:+8234460 Msa1231940:three_prime_UTR
TGAAGCTAATTACAGATTGT+GGG 0.492968 8_2:-8228765 None:intergenic
TCCCACCTGTTTCAATTGTG+GGG 0.496414 8_2:-8232103 None:intergenic
GTGAAGCTAATTACAGATTG+TGG 0.496895 8_2:-8228766 None:intergenic
TACTTGCTCTAACTTGATTG+AGG 0.500713 8_2:-8232031 None:intergenic
TACTTTGGTCTCAGGTAGAC+TGG 0.503714 8_2:+8232633 Msa1231940:intron
TCCAGATGCATGGGGCTGCC+CGG 0.507195 8_2:+8233331 Msa1231940:CDS
CAAATTTCTTGAGAATGCCA+AGG 0.508955 8_2:+8231129 Msa1231940:CDS
TGGTGTGATGTGGGAGTGGG+GGG 0.509050 8_2:-8234524 None:intergenic
ATTAATAAAGAGAAAGGTGA+AGG 0.513434 8_2:-8229009 None:intergenic
ACTGATGGTTGGTAAGTCCT+TGG 0.516375 8_2:-8231146 None:intergenic
TGAAGCTACTTTGGTTCAGA+AGG 0.518239 8_2:+8232302 Msa1231940:CDS
AATATTGGATCTAATGAAAG+TGG 0.519493 8_2:+8232727 Msa1231940:CDS
TCCTTGCTATTCCTACTCTC+AGG 0.521958 8_2:+8233373 Msa1231940:CDS
TAGCAAGGAGGTTGAGGCGG+AGG 0.522092 8_2:-8233359 None:intergenic
GTGGGAATGTAATAATGGTA+AGG 0.523077 8_2:+8234937 Msa1231940:three_prime_UTR
TGGAGCAATTAGTCTGCTCT+TGG 0.523702 8_2:-8232149 None:intergenic
TGGAGCAATTAGTCTGCTCT+TGG 0.523702 8_2:-8232182 None:intergenic
GCATTAGCGTTAGTCACTGC+AGG 0.526978 8_2:-8233567 None:intergenic
GGTTGAGGCGGAGGTAACAC+CGG 0.527668 8_2:-8233350 None:intergenic
CCATTAGCTAAAACTTGTGA+TGG 0.529542 8_2:-8229053 None:intergenic
TGGGAAGATTACTTGATGAT+GGG 0.531291 8_2:+8232121 Msa1231940:CDS
TACCGCTATGCACTTCATCA+TGG 0.536483 8_2:-8231488 None:intergenic
TATCCGTGGAAGGAGGTTTG+AGG 0.537090 8_2:-8234258 None:intergenic
AGATGAGTTCAAAGGCTTGA+CGG 0.537397 8_2:+8234984 Msa1231940:three_prime_UTR
ACAACATCTGCAAATAAAGT+AGG 0.537973 8_2:+8232417 Msa1231940:CDS
ATCTGTTTGAATCTGCAAGA+TGG 0.539034 8_2:-8231986 None:intergenic
GAAGGAACGAGGGGTAGCAT+TGG 0.539785 8_2:+8228838 Msa1231940:five_prime_UTR
ATTAGATCCAATATTCGAGA+AGG 0.541398 8_2:-8232719 None:intergenic
TATCTTACCATTATAGTCCA+TGG 0.541836 8_2:-8230000 None:intergenic
CAGAAATATTTGGCAGCATG+TGG 0.544781 8_2:+8231802 Msa1231940:CDS
AATGTAATAATGGTAAGGAT+AGG 0.545570 8_2:+8234942 Msa1231940:three_prime_UTR
TTGGCAGTACAAACCATAGC+TGG 0.547471 8_2:-8229879 None:intergenic
TACTTTGGTTCAGAAGGAAG+AGG 0.550366 8_2:+8232308 Msa1231940:CDS
GCAGATGCATCCAGATGCAT+GGG 0.552139 8_2:+8233322 Msa1231940:intron
TAAAGTATGAAGTGGCAGAA+AGG 0.553131 8_2:+8228871 Msa1231940:five_prime_UTR
AAAGAAAGTGGGGAACATGA+TGG 0.554765 8_2:+8232210 Msa1231940:CDS
GGAAGAGAACCATTGTAGCT+TGG 0.554887 8_2:-8234325 None:intergenic
GGACACCGGTTAGGCTACTT+GGG 0.555826 8_2:+8234770 Msa1231940:three_prime_UTR
GTTGAGGCGGAGGTAACACC+GGG 0.559115 8_2:-8233349 None:intergenic
AGTGCTACATGACTTCTACT+TGG 0.563825 8_2:-8234583 None:intergenic
GGTAGATTATAACCTGAAGA+TGG 0.564115 8_2:-8232778 None:intergenic
AGATTTCCATATAGCCATAG+TGG 0.564457 8_2:+8230876 Msa1231940:CDS
TTTATGTACTTACTGATGGT+TGG 0.569825 8_2:-8231157 None:intergenic
ATGTCTGTGTTTGTCTGTGT+CGG 0.570343 8_2:+8234665 Msa1231940:three_prime_UTR
TGCATACATGCAGGCAGAGG+AGG 0.571339 8_2:+8234177 Msa1231940:intron
AACCCCACAATTGAAACAGG+TGG 0.572926 8_2:+8232101 Msa1231940:CDS
ACCACAGTTACCAAATGTGA+AGG 0.574268 8_2:+8232371 Msa1231940:CDS
GTGAAGGCAGTGGAGCAACT+AGG 0.575398 8_2:+8232680 Msa1231940:CDS
TCCTTCCACGGATAGTGTGT+TGG 0.575823 8_2:+8234267 Msa1231940:CDS
TAAATAAATAAAGTATGAAG+TGG 0.576292 8_2:+8228863 Msa1231940:five_prime_UTR
TATGATACTCACCTGAGAGT+AGG 0.576306 8_2:-8233384 None:intergenic
GAGAACCATTGTAGCTTGGA+GGG 0.576383 8_2:-8234321 None:intergenic
TGTTGATGAGAGTCTGAGAA+AGG 0.576450 8_2:+8229848 Msa1231940:five_prime_UTR
TTTGGCACGTGATGATGGAT+AGG 0.576514 8_2:-8234714 None:intergenic
AGTTCAAGCAGTTGTGAGGG+AGG 0.576605 8_2:+8231103 Msa1231940:CDS
AGAGAACCATTGTAGCTTGG+AGG 0.578444 8_2:-8234322 None:intergenic
TTGGTACACTAGTATCCTGA+AGG 0.578532 8_2:+8228820 Msa1231940:five_prime_UTR
TTGGCTGAGCTTTCAAGACA+AGG 0.579530 8_2:+8234286 Msa1231940:CDS
GTGAGTTCAAGCAGTTGTGA+GGG 0.582577 8_2:+8231100 Msa1231940:CDS
GGTTATTGACAATGTTGTGA+AGG 0.583201 8_2:+8234198 Msa1231940:CDS
AAAGGATGCTAAGCCAGCTA+TGG 0.586494 8_2:+8229866 Msa1231940:exon
GGGAAGATTACTTGATGATG+GGG 0.587219 8_2:+8232122 Msa1231940:CDS
TTGAAATTGGACACATATGT+TGG 0.589977 8_2:-8234617 None:intergenic
ACCTTCACATTTGGTAACTG+TGG 0.592713 8_2:-8232372 None:intergenic
GGTGAGTTCAAGCAGTTGTG+AGG 0.592937 8_2:+8231099 Msa1231940:intron
TCTACTTGAGACTGCTGACA+AGG 0.593564 8_2:-8230848 None:intergenic
CCTATTGGCAAAGGTAGCCA+TGG 0.594145 8_2:-8234235 None:intergenic
TTAATAAAGAGAAAGGTGAA+GGG 0.595550 8_2:-8229008 None:intergenic
TGCAGATGCATCCAGATGCA+TGG 0.598401 8_2:+8233321 Msa1231940:intron
CTCAGCCAACACACTATCCG+TGG 0.600146 8_2:-8234272 None:intergenic
CACCGGTTAGGCTACTTGGG+CGG 0.600819 8_2:+8234773 Msa1231940:three_prime_UTR
CAGAAGTGCTGTCTTCCTCA+AGG 0.601333 8_2:-8229950 None:intergenic
AGGCCTCAAACCTCCTTCCA+CGG 0.602088 8_2:+8234255 Msa1231940:CDS
TCAAGTTAGAGCAAGTATTG+AGG 0.602690 8_2:+8232037 Msa1231940:CDS
GAATAGCAAGGAGGTTGAGG+CGG 0.602853 8_2:-8233362 None:intergenic
GGTTTGAGGCCTATTGGCAA+AGG 0.605392 8_2:-8234244 None:intergenic
TTGGCAGCATGTGGTTCACA+AGG 0.605863 8_2:+8231811 Msa1231940:CDS
TGAATCACTGAAACCTGTCA+AGG 0.606622 8_2:+8231951 Msa1231940:CDS
CATTACCGGATAATCGTCAA+AGG 0.608673 8_2:-8233622 None:intergenic
ACTCTCACACTTAGAAGCGT+CGG 0.609959 8_2:-8232340 None:intergenic
TATTGACAATGTTGTGAAGG+AGG 0.610521 8_2:+8234201 Msa1231940:CDS
ACTCAAGGTTCTTCTCCTTG+AGG 0.610526 8_2:+8229935 Msa1231940:CDS
CTAGTATCCTGAAGGAACGA+GGG 0.612245 8_2:+8228828 Msa1231940:five_prime_UTR
ATTGGATCTAATGAAAGTGG+AGG 0.613074 8_2:+8232730 Msa1231940:CDS
TGCTGATATGGTTGTAAATG+TGG 0.614575 8_2:+8234855 Msa1231940:three_prime_UTR
TTTGGTTCAGAAGGAAGAGG+AGG 0.614886 8_2:+8232311 Msa1231940:CDS
TTCCAAGTAGTAAATTGACT+GGG 0.624981 8_2:+8234461 Msa1231940:three_prime_UTR
ACAACAGGGTCATGATCTAG+TGG 0.627363 8_2:-8234409 None:intergenic
GCCAACACACTATCCGTGGA+AGG 0.629926 8_2:-8234268 None:intergenic
ACCTGAGAGTAGGAATAGCA+AGG 0.630696 8_2:-8233374 None:intergenic
CATCAAGGTATTGTATGAAG+TGG 0.630910 8_2:-8234554 None:intergenic
GGGCTTGACAAGGCATAATG+TGG 0.631155 8_2:+8232751 Msa1231940:CDS
ACCCCACAATTGAAACAGGT+GGG 0.633731 8_2:+8232102 Msa1231940:CDS
TGACTGGGAATAGGAGAACT+GGG 0.634457 8_2:+8234476 Msa1231940:three_prime_UTR
CGAGATAAGAACAAAGCTTG+AGG 0.636649 8_2:+8229977 Msa1231940:CDS
TTGGATCTAATGAAAGTGGA+GGG 0.637148 8_2:+8232731 Msa1231940:CDS
ACTAGTATCCTGAAGGAACG+AGG 0.638660 8_2:+8228827 Msa1231940:five_prime_UTR
GAAGCTAATTACAGATTGTG+GGG 0.639332 8_2:-8228764 None:intergenic
TGAAAGTGGAGGGCTTGACA+AGG 0.644049 8_2:+8232741 Msa1231940:CDS
AGTGACTAACGCTAATGCAA+TGG 0.647170 8_2:+8233572 Msa1231940:CDS
TAATCGTCAAAGGAACTATG+TGG 0.650093 8_2:-8233612 None:intergenic
TCATGTAGCACTGACACTTG+AGG 0.651032 8_2:+8234594 Msa1231940:three_prime_UTR
TCTCAGCAAACCACTCTCTG+AGG 0.652055 8_2:+8231772 Msa1231940:CDS
AGCATCCCTCCAAGCTACAA+TGG 0.653099 8_2:+8234316 Msa1231940:CDS
TGTTTGAATCTGCAAGATGG+AGG 0.654953 8_2:-8231983 None:intergenic
AGGAGGCGATAAGTAAGCCA+TGG 0.661577 8_2:+8234218 Msa1231940:CDS
TGTGAGCATCAACAAATGTG+TGG 0.671491 8_2:-8234807 None:intergenic
AGAGCAGACTAATTGCTCCA+CGG 0.679219 8_2:+8232152 Msa1231940:CDS
AGAGCAGACTAATTGCTCCA+CGG 0.679219 8_2:+8232185 Msa1231940:CDS
AACACACTATCCGTGGAAGG+AGG 0.682497 8_2:-8234265 None:intergenic
CAAACAGGCGTTCAATGCTG+GGG 0.683364 8_2:+8231915 Msa1231940:intron
TTTCCATATAGCCATAGTGG+AGG 0.687853 8_2:+8230879 Msa1231940:CDS
TAGTATCCTGAAGGAACGAG+GGG 0.714922 8_2:+8228829 Msa1231940:five_prime_UTR
GAGCAGGATAATGTTCATGG+TGG 0.729950 8_2:-8232074 None:intergenic
CAGATGCATCCAGATGCATG+GGG 0.732391 8_2:+8233323 Msa1231940:intron
CACCATGATGAAGTGCATAG+CGG 0.737619 8_2:+8231486 Msa1231940:CDS
TGAGAGTAGGAATAGCAAGG+AGG 0.753523 8_2:-8233371 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAGTTATTTAAATTATTTA+TGG + chr8_2:8233498-8233517 Msa1231940:intron 10.0%
!! AAAATAAATAAAAAATGAAG+TGG + chr8_2:8234746-8234765 Msa1231940:three_prime_UTR 10.0%
!! AAATAAATAAAAAATGAAGT+GGG + chr8_2:8234747-8234766 Msa1231940:three_prime_UTR 10.0%
!! TAAATAAATAAAGTATGAAG+TGG + chr8_2:8228863-8228882 Msa1231940:five_prime_UTR 15.0%
!! TTTATTAATAATGCAGTTAA+GGG + chr8_2:8229023-8229042 Msa1231940:five_prime_UTR 15.0%
!!! GTTTTACAAAGAATTATAAA+TGG - chr8_2:8230406-8230425 None:intergenic 15.0%
!! TCTAATTGAATAAATTTGTA+TGG + chr8_2:8233982-8234001 Msa1231940:intron 15.0%
!! CTAATTGAATAAATTTGTAT+GGG + chr8_2:8233983-8234002 Msa1231940:intron 15.0%
!! AAACTAAAAAAATAACAACA+GGG - chr8_2:8234426-8234445 None:intergenic 15.0%
!!! ATTTATTTTTTGCTTTGTTT+TGG - chr8_2:8234735-8234754 None:intergenic 15.0%
!! AATAAATAAAAAATGAAGTG+GGG + chr8_2:8234748-8234767 Msa1231940:three_prime_UTR 15.0%
!!! AAAATGATACATAATTTTGT+TGG - chr8_2:8235123-8235142 None:intergenic 15.0%
!! TAATATATATAGCCTTTCTT+TGG - chr8_2:8228741-8228760 None:intergenic 20.0%
!! TGCATTATTAATAAAGAGAA+AGG - chr8_2:8229018-8229037 None:intergenic 20.0%
!! CTTTATTAATAATGCAGTTA+AGG + chr8_2:8229022-8229041 Msa1231940:five_prime_UTR 20.0%
!!! ATTTTTTATGAGACACTTTA+AGG - chr8_2:8229140-8229159 None:intergenic 20.0%
!!! TTCTTCATCTACATAAATTT+TGG + chr8_2:8230061-8230080 Msa1231940:intron 20.0%
!!! TATAAATGGATTCCTTTTTT+TGG - chr8_2:8230392-8230411 None:intergenic 20.0%
!!! ATTTTTGCTGTGATTTTTTA+TGG + chr8_2:8230477-8230496 Msa1231940:intron 20.0%
!! AATTACCATATATGGAAATA+TGG - chr8_2:8230504-8230523 None:intergenic 20.0%
!! ATGTAAAGAATTACCATATA+TGG - chr8_2:8230512-8230531 None:intergenic 20.0%
!! ATATATGGTAATTCTTTACA+TGG + chr8_2:8230511-8230530 Msa1231940:intron 20.0%
!! AATAAACAACTTAACAGAAA+GGG - chr8_2:8230779-8230798 None:intergenic 20.0%
!! TAATAAACAACTTAACAGAA+AGG - chr8_2:8230780-8230799 None:intergenic 20.0%
!! AAATAAAATGAACATCTCTA+AGG + chr8_2:8230976-8230995 Msa1231940:intron 20.0%
!!! CATATCCTTTTAAAATTAGA+GGG + chr8_2:8231589-8231608 Msa1231940:intron 20.0%
!!! CTAATCAAACTAGTTTTATT+TGG + chr8_2:8231612-8231631 Msa1231940:intron 20.0%
!!! TTTTTCAGTTCTACTTAAAT+AGG + chr8_2:8231635-8231654 Msa1231940:intron 20.0%
!!! TTGTTTATCCATGTTTTATA+AGG + chr8_2:8232551-8232570 Msa1231940:intron 20.0%
!! GAATATAACCTTATAAAACA+TGG - chr8_2:8232562-8232581 None:intergenic 20.0%
!! AAAACTGTATTAAGAAAATC+AGG - chr8_2:8232611-8232630 None:intergenic 20.0%
!!! TGATTTTCTTAATACAGTTT+TGG + chr8_2:8232610-8232629 Msa1231940:intron 20.0%
!!! ATTAATTACAGTTTTGAATG+AGG - chr8_2:8232834-8232853 None:intergenic 20.0%
!!! ACATAAAGCATTTTGATAAT+CGG - chr8_2:8233903-8233922 None:intergenic 20.0%
!!! AAATATGATCAATGGTTTTA+AGG + chr8_2:8233937-8233956 Msa1231940:intron 20.0%
!!! AATATGATCAATGGTTTTAA+GGG + chr8_2:8233938-8233957 Msa1231940:intron 20.0%
!! TCTATAAAACAATGATGATT+TGG - chr8_2:8234124-8234143 None:intergenic 20.0%
!! GAAACTAAAAAAATAACAAC+AGG - chr8_2:8234427-8234446 None:intergenic 20.0%
!! ATAAATAAAAAATGAAGTGG+GGG + chr8_2:8234749-8234768 Msa1231940:three_prime_UTR 20.0%
!!! ATACATAATTTTGTTGGAAA+AGG - chr8_2:8235117-8235136 None:intergenic 20.0%
! TTAATAAAGAGAAAGGTGAA+GGG - chr8_2:8229011-8229030 None:intergenic 25.0%
! ATTAATAAAGAGAAAGGTGA+AGG - chr8_2:8229012-8229031 None:intergenic 25.0%
!! TTTTCTTTTCTTTTATGCCA+AGG + chr8_2:8229105-8229124 Msa1231940:five_prime_UTR 25.0%
! AACAAGCAAGAAATTCAAAA+GGG - chr8_2:8229253-8229272 None:intergenic 25.0%
! AAACAAGCAAGAAATTCAAA+AGG - chr8_2:8229254-8229273 None:intergenic 25.0%
! CTTTATAACAAAAACATGTG+AGG - chr8_2:8229303-8229322 None:intergenic 25.0%
! ATGAGATCTTAATCATTATC+TGG + chr8_2:8229352-8229371 Msa1231940:intron 25.0%
! CATCTTTATTATGTAGTACA+TGG + chr8_2:8229430-8229449 Msa1231940:intron 25.0%
!!! AGCTTTTATTTTGTAAGCTA+AGG - chr8_2:8229584-8229603 None:intergenic 25.0%
! TTTCCATTCTTGTAAATCAT+TGG - chr8_2:8229901-8229920 None:intergenic 25.0%
! AAAGTAACCATAGTACAAAT+TGG - chr8_2:8230091-8230110 None:intergenic 25.0%
!! ATTTGTACTATGGTTACTTT+AGG + chr8_2:8230091-8230110 Msa1231940:intron 25.0%
!! TTTGTACTATGGTTACTTTA+GGG + chr8_2:8230092-8230111 Msa1231940:intron 25.0%
!!! GTCTTAATATTTTTGTACGA+TGG + chr8_2:8230125-8230144 Msa1231940:intron 25.0%
! TTAGACTTTAGACCAAAAAA+AGG + chr8_2:8230377-8230396 Msa1231940:intron 25.0%
! ACTACACTATATGAATTAGT+TGG + chr8_2:8230603-8230622 Msa1231940:intron 25.0%
! CTTTACAAAGATACGAAATT+TGG - chr8_2:8231035-8231054 None:intergenic 25.0%
!! TAAACCAAACACAAATTTTC+TGG + chr8_2:8231176-8231195 Msa1231940:intron 25.0%
! TAAACCAGAAAATTTGTGTT+TGG - chr8_2:8231183-8231202 None:intergenic 25.0%
!!! TTTTTAGTAGCTTTTACCTA+TGG + chr8_2:8231306-8231325 Msa1231940:intron 25.0%
! AAATAACGATATACGGAAAT+TGG - chr8_2:8231543-8231562 None:intergenic 25.0%
! AAGCATGAAATAACGATATA+CGG - chr8_2:8231550-8231569 None:intergenic 25.0%
!! TATATCGTTATTTCATGCTT+TGG + chr8_2:8231550-8231569 Msa1231940:intron 25.0%
! TTTAAAAGGATATGGTCAAT+CGG - chr8_2:8231583-8231602 None:intergenic 25.0%
!!! CCTCTAATTTTAAAAGGATA+TGG - chr8_2:8231591-8231610 None:intergenic 25.0%
!!! CCATATCCTTTTAAAATTAG+AGG + chr8_2:8231588-8231607 Msa1231940:intron 25.0%
!! ATTAGCCCTCTAATTTTAAA+AGG - chr8_2:8231597-8231616 None:intergenic 25.0%
!!! TTCGTTTTCTTTTTTAAGCT+TGG + chr8_2:8231737-8231756 Msa1231940:intron 25.0%
! AATGTGAGATAAAAGCTAAT+CGG + chr8_2:8232454-8232473 Msa1231940:CDS 25.0%
!! TTTTATGTATGAATGATCTG+CGG + chr8_2:8232583-8232602 Msa1231940:intron 25.0%
!!! TTAATACAGTTTTGGTACTT+TGG + chr8_2:8232618-8232637 Msa1231940:intron 25.0%
! AATATTGGATCTAATGAAAG+TGG + chr8_2:8232727-8232746 Msa1231940:CDS 25.0%
!!! TGAGGTATTGAAATAGTTTT+TGG - chr8_2:8232816-8232835 None:intergenic 25.0%
! TGATATTCGTATATCTTCAT+AGG + chr8_2:8232861-8232880 Msa1231940:intron 25.0%
! TCTTATGCATTCTATATTTC+TGG - chr8_2:8232928-8232947 None:intergenic 25.0%
! GTATGGTTAGAATAATATGA+TGG - chr8_2:8233049-8233068 None:intergenic 25.0%
!!! TCTTTTTTTTATCAAACTGC+AGG + chr8_2:8233539-8233558 Msa1231940:intron 25.0%
! GCTAATCAGAATATATAAAC+TGG - chr8_2:8233703-8233722 None:intergenic 25.0%
! GATTTCATTACAACATGAAA+TGG - chr8_2:8233727-8233746 None:intergenic 25.0%
!! TCTTTTTAATGCTTTTAAGC+AGG - chr8_2:8233755-8233774 None:intergenic 25.0%
!! TTGAATCACTGAACTTTTTA+CGG - chr8_2:8233786-8233805 None:intergenic 25.0%
! TGTCGAATAAATATGATCAA+TGG + chr8_2:8233929-8233948 Msa1231940:intron 25.0%
! AATAAATTTGTATGGGAATC+AGG + chr8_2:8233990-8234009 Msa1231940:intron 25.0%
! ATAAATTTGTATGGGAATCA+GGG + chr8_2:8233991-8234010 Msa1231940:intron 25.0%
! TTACCAAATGTTTGTATAGT+AGG + chr8_2:8234035-8234054 Msa1231940:intron 25.0%
! TACCAAATGTTTGTATAGTA+GGG + chr8_2:8234036-8234055 Msa1231940:intron 25.0%
! TTTGGTTGTAAATGTCAATA+GGG - chr8_2:8234349-8234368 None:intergenic 25.0%
!!! TTTTGGTTGTAAATGTCAAT+AGG - chr8_2:8234350-8234369 None:intergenic 25.0%
! TGACATTTACAACCAAAAAT+TGG + chr8_2:8234352-8234371 Msa1231940:exon 25.0%
! TGACAAACTTCTATACAAAA+AGG + chr8_2:8234384-8234403 Msa1231940:three_prime_UTR 25.0%
! GACAAACTTCTATACAAAAA+GGG + chr8_2:8234385-8234404 Msa1231940:three_prime_UTR 25.0%
!!! AATGATAGGTATGTTTTGTT+GGG + chr8_2:8234899-8234918 Msa1231940:three_prime_UTR 25.0%
! AATGTAATAATGGTAAGGAT+AGG + chr8_2:8234942-8234961 Msa1231940:three_prime_UTR 25.0%
! GAATAAAAAGATGAGTTCAA+AGG + chr8_2:8234976-8234995 Msa1231940:three_prime_UTR 25.0%
TGAAGCTAATTACAGATTGT+GGG - chr8_2:8228768-8228787 None:intergenic 30.0%
!!! TGAAGAACTCTAAGCTTTTT+TGG + chr8_2:8228801-8228820 Msa1231940:five_prime_UTR 30.0%
!!! CAAGTTTTAGCTAATGGAAT+AGG + chr8_2:8229059-8229078 Msa1231940:five_prime_UTR 30.0%
!!! CTTTAAGGTTTTAACTACCT+TGG - chr8_2:8229125-8229144 None:intergenic 30.0%
CTTTATATTGCGGAAAAATG+TGG + chr8_2:8229492-8229511 Msa1231940:intron 30.0%
ACATTGCAACTACAATTTCA+AGG - chr8_2:8229522-8229541 None:intergenic 30.0%
AGACAAAGTGAAGTATAGAA+AGG + chr8_2:8229751-8229770 Msa1231940:intron 30.0%
TATCTTACCATTATAGTCCA+TGG - chr8_2:8230003-8230022 None:intergenic 30.0%
! TTGTACTATGGTTACTTTAG+GGG + chr8_2:8230093-8230112 Msa1231940:intron 30.0%
! TGGTTAATGAGCTTTAGTTA+AGG + chr8_2:8230233-8230252 Msa1231940:intron 30.0%
TTAGTTAAGGTTGAATCGTT+TGG + chr8_2:8230246-8230265 Msa1231940:intron 30.0%
TAGTTAAGGTTGAATCGTTT+GGG + chr8_2:8230247-8230266 Msa1231940:intron 30.0%
ATGGTCCATATTTCCATATA+TGG + chr8_2:8230496-8230515 Msa1231940:intron 30.0%
GAAACTGTATAGAAACTTTG+AGG - chr8_2:8230805-8230824 None:intergenic 30.0%
! ATTTGAAACTTAGATCTGTG+TGG + chr8_2:8230946-8230965 Msa1231940:intron 30.0%
TTTATGTACTTACTGATGGT+TGG - chr8_2:8231160-8231179 None:intergenic 30.0%
TTGGTTTATGTACTTACTGA+TGG - chr8_2:8231164-8231183 None:intergenic 30.0%
!! CATCAATTTCTAGTTTCCAT+AGG - chr8_2:8231325-8231344 None:intergenic 30.0%
GGAAACTAGAAATTGATGAA+TGG + chr8_2:8231327-8231346 Msa1231940:intron 30.0%
AAATTGATGAATGGTGTAGA+GGG + chr8_2:8231336-8231355 Msa1231940:intron 30.0%
TCAAAAATTGAAGAACTCAC+TGG - chr8_2:8231436-8231455 None:intergenic 30.0%
ATGTTAAGATTAAATGCGTG+TGG - chr8_2:8231861-8231880 None:intergenic 30.0%
! AACAAAATCTGAAGCTACTT+TGG + chr8_2:8232293-8232312 Msa1231940:CDS 30.0%
! TTGTTTAGAACCTTCACATT+TGG - chr8_2:8232384-8232403 None:intergenic 30.0%
ACAACATCTGCAAATAAAGT+AGG + chr8_2:8232417-8232436 Msa1231940:CDS 30.0%
AGCATTATGAGAAGAATGAA+TGG - chr8_2:8232505-8232524 None:intergenic 30.0%
! CAATGAACAGTCTGAAATAA+CGG - chr8_2:8232534-8232553 None:intergenic 30.0%
ATTAGATCCAATATTCGAGA+AGG - chr8_2:8232722-8232741 None:intergenic 30.0%
!! AAATAGTTTTTGGAAACCGT+GGG - chr8_2:8232806-8232825 None:intergenic 30.0%
AGGTAATGCATACTAACATA+AGG + chr8_2:8232881-8232900 Msa1231940:intron 30.0%
TGGTTAGAATAATATGATGG+AGG - chr8_2:8233046-8233065 None:intergenic 30.0%
ACATAAACAACCTTTCTCTT+TGG + chr8_2:8233248-8233267 Msa1231940:intron 30.0%
TTAGCACAGAAAATAGCAAA+AGG - chr8_2:8233432-8233451 None:intergenic 30.0%
!!! TTTGCTATTTTCTGTGCTAA+TGG + chr8_2:8233432-8233451 Msa1231940:intron 30.0%
TCAAGTAGAAAGAAACTGAA+AGG - chr8_2:8233657-8233676 None:intergenic 30.0%
ACCAAATGTTTGTATAGTAG+GGG + chr8_2:8234037-8234056 Msa1231940:intron 30.0%
GTATGCATTGTAAAACACTA+TGG - chr8_2:8234164-8234183 None:intergenic 30.0%
TTCCAAGTAGTAAATTGACT+GGG + chr8_2:8234461-8234480 Msa1231940:three_prime_UTR 30.0%
CCTAATATGGCTTAACAAAA+TGG - chr8_2:8234503-8234522 None:intergenic 30.0%
! CCATTTTGTTAAGCCATATT+AGG + chr8_2:8234500-8234519 Msa1231940:three_prime_UTR 30.0%
TTGAAATTGGACACATATGT+TGG - chr8_2:8234620-8234639 None:intergenic 30.0%
TGACACAAACATGTTGAAAT+TGG - chr8_2:8234633-8234652 None:intergenic 30.0%
ATGCTCACAAAAAGAAATTG+TGG + chr8_2:8234821-8234840 Msa1231940:three_prime_UTR 30.0%
GTTGTAAATAGATGCTGATA+TGG + chr8_2:8234843-8234862 Msa1231940:three_prime_UTR 30.0%
! GTTGTAAATGTGGTACTTTT+GGG + chr8_2:8234865-8234884 Msa1231940:three_prime_UTR 30.0%
! CAATGATAGGTATGTTTTGT+TGG + chr8_2:8234898-8234917 Msa1231940:three_prime_UTR 30.0%
!! ATGATAGGTATGTTTTGTTG+GGG + chr8_2:8234900-8234919 Msa1231940:three_prime_UTR 30.0%
! TTTTGTTGGGGTTGTATTTT+TGG + chr8_2:8234912-8234931 Msa1231940:three_prime_UTR 30.0%
! TTTGTTGGGGTTGTATTTTT+GGG + chr8_2:8234913-8234932 Msa1231940:three_prime_UTR 30.0%
!!! CTTACTTTTTCGCCAAAGAA+AGG + chr8_2:8228726-8228745 Msa1231940:five_prime_UTR 35.0%
GAAGCTAATTACAGATTGTG+GGG - chr8_2:8228767-8228786 None:intergenic 35.0%
GTGAAGCTAATTACAGATTG+TGG - chr8_2:8228769-8228788 None:intergenic 35.0%
TAAAGTATGAAGTGGCAGAA+AGG + chr8_2:8228871-8228890 Msa1231940:five_prime_UTR 35.0%
! AGGTTCTTTGTAGCTTTTAG+AGG + chr8_2:8228891-8228910 Msa1231940:five_prime_UTR 35.0%
! GGTTCTTTGTAGCTTTTAGA+GGG + chr8_2:8228892-8228911 Msa1231940:five_prime_UTR 35.0%
ATCAGTAGTAGTAGTAGTTG+CGG - chr8_2:8228927-8228946 None:intergenic 35.0%
CCATTAGCTAAAACTTGTGA+TGG - chr8_2:8229056-8229075 None:intergenic 35.0%
!!! CCATCACAAGTTTTAGCTAA+TGG + chr8_2:8229053-8229072 Msa1231940:five_prime_UTR 35.0%
! TTAGTTCAAGTTTGCCAGTT+TGG + chr8_2:8229199-8229218 Msa1231940:intron 35.0%
! TGCACACATATTTTCCAAAC+TGG - chr8_2:8229216-8229235 None:intergenic 35.0%
ATAACAAAAACATGTGAGGC+AGG - chr8_2:8229299-8229318 None:intergenic 35.0%
!! CTGCTTACTGTTTTCTGAAA+GGG + chr8_2:8229388-8229407 Msa1231940:intron 35.0%
! ATAAAGATGACATTTGCTGC+TGG - chr8_2:8229419-8229438 None:intergenic 35.0%
TGTGAGTGTTCATCTGAATA+TGG + chr8_2:8229637-8229656 Msa1231940:intron 35.0%
CTGCCAATGATTTACAAGAA+TGG + chr8_2:8229895-8229914 Msa1231940:CDS 35.0%
! GAATGGAAAGATTTTCCCAA+AGG + chr8_2:8229912-8229931 Msa1231940:CDS 35.0%
!! CTCAAGCTTTGTTCTTATCT+CGG - chr8_2:8229979-8229998 None:intergenic 35.0%
! TGTACTATGGTTACTTTAGG+GGG + chr8_2:8230094-8230113 Msa1231940:intron 35.0%
ATCCTTGAATAGTAACCAAG+TGG + chr8_2:8230199-8230218 Msa1231940:intron 35.0%
AACCACTTGGTTACTATTCA+AGG - chr8_2:8230204-8230223 None:intergenic 35.0%
TCCAGTCAAGATTCGAATTT+GGG - chr8_2:8230277-8230296 None:intergenic 35.0%
TTCCAGTCAAGATTCGAATT+TGG - chr8_2:8230278-8230297 None:intergenic 35.0%
ATCTTGACTGGAAAAATCCT+TGG + chr8_2:8230285-8230304 Msa1231940:intron 35.0%
GCAACTAAATACTGAGATCA+CGG - chr8_2:8230428-8230447 None:intergenic 35.0%
! ACCTTATGTGTTTTCACAAC+TGG + chr8_2:8230572-8230591 Msa1231940:intron 35.0%
TCCAGTTGTGAAAACACATA+AGG - chr8_2:8230576-8230595 None:intergenic 35.0%
! TGTGTTTTCACAACTGGATA+TGG + chr8_2:8230578-8230597 Msa1231940:intron 35.0%
ATGGCTATATGGAAATCTTC+AGG - chr8_2:8230874-8230893 None:intergenic 35.0%
AGATTTCCATATAGCCATAG+TGG + chr8_2:8230876-8230895 Msa1231940:CDS 35.0%
ATGAAAGTTTACCTCCACTA+TGG - chr8_2:8230893-8230912 None:intergenic 35.0%
CGTATCTTTGTAAAGCGATA+CGG + chr8_2:8231040-8231059 Msa1231940:intron 35.0%
TATGCATCCATCCTAATTGT+AGG + chr8_2:8231078-8231097 Msa1231940:intron 35.0%
CAAATTTCTTGAGAATGCCA+AGG + chr8_2:8231129-8231148 Msa1231940:CDS 35.0%
GAAATTGATGAATGGTGTAG+AGG + chr8_2:8231335-8231354 Msa1231940:intron 35.0%
AATTGATGAATGGTGTAGAG+GGG + chr8_2:8231337-8231356 Msa1231940:intron 35.0%
GGAACATGACATGGAAAATA+CGG + chr8_2:8231359-8231378 Msa1231940:intron 35.0%
GAACATGACATGGAAAATAC+GGG + chr8_2:8231360-8231379 Msa1231940:intron 35.0%
AACATGACATGGAAAATACG+GGG + chr8_2:8231361-8231380 Msa1231940:intron 35.0%
AGGACAAGCTCAGAAATATT+TGG + chr8_2:8231792-8231811 Msa1231940:CDS 35.0%
TTATGCGCTTTAACTCAAAC+AGG + chr8_2:8231900-8231919 Msa1231940:intron 35.0%
ATCTGTTTGAATCTGCAAGA+TGG - chr8_2:8231989-8232008 None:intergenic 35.0%
TACTTGCTCTAACTTGATTG+AGG - chr8_2:8232034-8232053 None:intergenic 35.0%
! TCAAGTTAGAGCAAGTATTG+AGG + chr8_2:8232037-8232056 Msa1231940:CDS 35.0%
! TGGGAAGATTACTTGATGAT+GGG + chr8_2:8232121-8232140 Msa1231940:CDS 35.0%
!!! ACAAATTTTTTGTGCAGCTC+TGG - chr8_2:8232662-8232681 None:intergenic 35.0%
GCTGCACAAAAAATTTGTGA+AGG + chr8_2:8232664-8232683 Msa1231940:CDS 35.0%
CAAAAAATTTGTGAAGGCAG+TGG + chr8_2:8232670-8232689 Msa1231940:CDS 35.0%
ATTGGATCTAATGAAAGTGG+AGG + chr8_2:8232730-8232749 Msa1231940:CDS 35.0%
TTGGATCTAATGAAAGTGGA+GGG + chr8_2:8232731-8232750 Msa1231940:CDS 35.0%
GGTAGATTATAACCTGAAGA+TGG - chr8_2:8232781-8232800 None:intergenic 35.0%
!! GAAATAGTTTTTGGAAACCG+TGG - chr8_2:8232807-8232826 None:intergenic 35.0%
AGACAATAGTTCCTTTGAGT+TGG - chr8_2:8233001-8233020 None:intergenic 35.0%
! AGAATAATATGATGGAGGAC+CGG - chr8_2:8233041-8233060 None:intergenic 35.0%
ATAGGATATAAAGGAGCTAG+AGG - chr8_2:8233079-8233098 None:intergenic 35.0%
TAGCTCCTTTATATCCTATG+TGG + chr8_2:8233080-8233099 Msa1231940:intron 35.0%
AGCTCCTTTATATCCTATGT+GGG + chr8_2:8233081-8233100 Msa1231940:intron 35.0%
! TTCCAATGCCAATTTTCTGT+AGG - chr8_2:8233172-8233191 None:intergenic 35.0%
AAATATATTACCCCCGGAAA+TGG - chr8_2:8233196-8233215 None:intergenic 35.0%
CTGAACAAATATATTACCCC+CGG - chr8_2:8233202-8233221 None:intergenic 35.0%
ACATAACAAGCCAAAGAGAA+AGG - chr8_2:8233261-8233280 None:intergenic 35.0%
!! GGCTTGTTATGTAGAGATTA+TGG + chr8_2:8233269-8233288 Msa1231940:intron 35.0%
GCAGGCATAATTACATTATC+TGG - chr8_2:8233464-8233483 None:intergenic 35.0%
CTAGCAAAAACAAATTGTGC+AGG - chr8_2:8233482-8233501 None:intergenic 35.0%
TAATCGTCAAAGGAACTATG+TGG - chr8_2:8233615-8233634 None:intergenic 35.0%
TAGTTCCTTTGACGATTATC+CGG + chr8_2:8233617-8233636 Msa1231940:CDS 35.0%
!! AAAGGAAAGCATTGCATTAC+CGG - chr8_2:8233639-8233658 None:intergenic 35.0%
TAAGGGCTGAATATATCACA+TGG + chr8_2:8233955-8233974 Msa1231940:intron 35.0%
AACACTATGGTAAGAGTTCA+TGG - chr8_2:8234151-8234170 None:intergenic 35.0%
! GTTTTACAATGCATACATGC+AGG + chr8_2:8234168-8234187 Msa1231940:intron 35.0%
GGTTATTGACAATGTTGTGA+AGG + chr8_2:8234198-8234217 Msa1231940:CDS 35.0%
TATTGACAATGTTGTGAAGG+AGG + chr8_2:8234201-8234220 Msa1231940:CDS 35.0%
!! CAACCAAAAATTGGTTCTGA+TGG + chr8_2:8234361-8234380 Msa1231940:three_prime_UTR 35.0%
! TCACCATCAGAACCAATTTT+TGG - chr8_2:8234367-8234386 None:intergenic 35.0%
GTTCCAAGTAGTAAATTGAC+TGG + chr8_2:8234460-8234479 Msa1231940:three_prime_UTR 35.0%
TTCCCAGTCAATTTACTACT+TGG - chr8_2:8234466-8234485 None:intergenic 35.0%
GTAGTAAATTGACTGGGAAT+AGG + chr8_2:8234467-8234486 Msa1231940:three_prime_UTR 35.0%
TTGTATGAAGTGGTTGTTGT+TGG - chr8_2:8234547-8234566 None:intergenic 35.0%
!! CATCAAGGTATTGTATGAAG+TGG - chr8_2:8234557-8234576 None:intergenic 35.0%
TGCTGATATGGTTGTAAATG+TGG + chr8_2:8234855-8234874 Msa1231940:three_prime_UTR 35.0%
! GGTTGTAAATGTGGTACTTT+TGG + chr8_2:8234864-8234883 Msa1231940:three_prime_UTR 35.0%
! GGGAAGCATAAAACAATGAT+AGG + chr8_2:8234885-8234904 Msa1231940:three_prime_UTR 35.0%
GTGGGAATGTAATAATGGTA+AGG + chr8_2:8234937-8234956 Msa1231940:three_prime_UTR 35.0%
TTGGTACACTAGTATCCTGA+AGG + chr8_2:8228820-8228839 Msa1231940:five_prime_UTR 40.0%
! GCTGCTTACTGTTTTCTGAA+AGG + chr8_2:8229387-8229406 Msa1231940:intron 40.0%
TTTCAGAGACCTCAAAATCC+TGG + chr8_2:8229544-8229563 Msa1231940:intron 40.0%
ACCTCAAAATCCTGGAATTG+CGG + chr8_2:8229552-8229571 Msa1231940:intron 40.0%
!! AAGGTTTTAACCGCAATTCC+AGG - chr8_2:8229565-8229584 None:intergenic 40.0%
AGTGTTCATCTGAATATGGC+TGG + chr8_2:8229641-8229660 Msa1231940:intron 40.0%
GTGTTCATCTGAATATGGCT+GGG + chr8_2:8229642-8229661 Msa1231940:intron 40.0%
TGTTCATCTGAATATGGCTG+GGG + chr8_2:8229643-8229662 Msa1231940:intron 40.0%
CACAGACTCACAGTATAAAG+TGG - chr8_2:8229688-8229707 None:intergenic 40.0%
GTATCTGCTAGCTAGCTATT+TGG + chr8_2:8229712-8229731 Msa1231940:intron 40.0%
GAATGAAGCTTGTGATGTCA+TGG + chr8_2:8229806-8229825 Msa1231940:intron 40.0%
!! TGATGTCATGGTTTTGCAGA+AGG + chr8_2:8229818-8229837 Msa1231940:intron 40.0%
!! CATGGTTTTGCAGAAGGAAT+TGG + chr8_2:8229824-8229843 Msa1231940:intron 40.0%
! TGTTGATGAGAGTCTGAGAA+AGG + chr8_2:8229848-8229867 Msa1231940:five_prime_UTR 40.0%
! AGATTTTCCCAAAGGACTCA+AGG + chr8_2:8229920-8229939 Msa1231940:CDS 40.0%
AGAAGAACCTTGAGTCCTTT+GGG - chr8_2:8229930-8229949 None:intergenic 40.0%
CGAGATAAGAACAAAGCTTG+AGG + chr8_2:8229977-8229996 Msa1231940:CDS 40.0%
TGTAGATGAAGAAGTGAGAG+AGG - chr8_2:8230054-8230073 None:intergenic 40.0%
TGGTCTGCCAATTTGTACTA+TGG + chr8_2:8230081-8230100 Msa1231940:intron 40.0%
ACCAAGTGGTTGAATTCAAG+TGG + chr8_2:8230213-8230232 Msa1231940:intron 40.0%
ACCACTTGAATTCAACCACT+TGG - chr8_2:8230217-8230236 None:intergenic 40.0%
ACCCAAATTCGAATCTTGAC+TGG + chr8_2:8230273-8230292 Msa1231940:intron 40.0%
GGATATGTAAAACTTGGCCA+AGG - chr8_2:8230305-8230324 None:intergenic 40.0%
GACTCTGGTAATTTGGACTT+CGG - chr8_2:8230332-8230351 None:intergenic 40.0%
! GTCTAAAGTCTAAAACCCTC+CGG - chr8_2:8230370-8230389 None:intergenic 40.0%
TATGAATTAGTTGGCTGCAG+AGG + chr8_2:8230612-8230631 Msa1231940:intron 40.0%
CAGAGGACATGCATTTCTTA+TGG + chr8_2:8230629-8230648 Msa1231940:intron 40.0%
AGCTGAATTAGAGAAGATGC+AGG - chr8_2:8230740-8230759 None:intergenic 40.0%
TTTCCATATAGCCATAGTGG+AGG + chr8_2:8230879-8230898 Msa1231940:CDS 40.0%
TTACCTCCACTATGGCTATA+TGG - chr8_2:8230885-8230904 None:intergenic 40.0%
GAACTCACCTACAATTAGGA+TGG - chr8_2:8231088-8231107 None:intergenic 40.0%
GCTTGAACTCACCTACAATT+AGG - chr8_2:8231092-8231111 None:intergenic 40.0%
ATTGATGAATGGTGTAGAGG+GGG + chr8_2:8231338-8231357 Msa1231940:intron 40.0%
! AGTGCATAGCGGTAAGATTT+TGG + chr8_2:8231497-8231516 Msa1231940:intron 40.0%
GCGCGCATCAACAATTAAAA+CGG - chr8_2:8231695-8231714 None:intergenic 40.0%
!!! CTTTTTTAAGCTTGGAGCAG+TGG + chr8_2:8231745-8231764 Msa1231940:intron 40.0%
CAGAAATATTTGGCAGCATG+TGG + chr8_2:8231802-8231821 Msa1231940:CDS 40.0%
TGAATCACTGAAACCTGTCA+AGG + chr8_2:8231951-8231970 Msa1231940:CDS 40.0%
TGTTTGAATCTGCAAGATGG+AGG - chr8_2:8231986-8232005 None:intergenic 40.0%
AAGGAGCAGGATAATGTTCA+TGG - chr8_2:8232080-8232099 None:intergenic 40.0%
TGTTTCAATTGTGGGGTTGA+AGG - chr8_2:8232099-8232118 None:intergenic 40.0%
TTCAACCCCACAATTGAAAC+AGG + chr8_2:8232098-8232117 Msa1231940:CDS 40.0%
TTCCCACCTGTTTCAATTGT+GGG - chr8_2:8232107-8232126 None:intergenic 40.0%
GTGGGAAGATTACTTGATGA+TGG + chr8_2:8232120-8232139 Msa1231940:CDS 40.0%
!! GGGAAGATTACTTGATGATG+GGG + chr8_2:8232122-8232141 Msa1231940:CDS 40.0%
AAAGAAAGTGGGGAACATGA+TGG + chr8_2:8232210-8232229 Msa1231940:CDS 40.0%
! TGAAGCTACTTTGGTTCAGA+AGG + chr8_2:8232302-8232321 Msa1231940:CDS 40.0%
! TACTTTGGTTCAGAAGGAAG+AGG + chr8_2:8232308-8232327 Msa1231940:CDS 40.0%
ACCACAGTTACCAAATGTGA+AGG + chr8_2:8232371-8232390 Msa1231940:CDS 40.0%
! ACCTTCACATTTGGTAACTG+TGG - chr8_2:8232375-8232394 None:intergenic 40.0%
!! AGTTTTGGTACTTTGGTCTC+AGG + chr8_2:8232625-8232644 Msa1231940:intron 40.0%
GGTTATAATCTACCTTCCCA+CGG + chr8_2:8232787-8232806 Msa1231940:intron 40.0%
ATCGGAAATGGCTAAATCCA+AGG + chr8_2:8232972-8232991 Msa1231940:intron 40.0%
TCGGAAATGGCTAAATCCAA+GGG + chr8_2:8232973-8232992 Msa1231940:intron 40.0%
CTTCAAAGACCAATTATGCC+CGG + chr8_2:8233019-8233038 Msa1231940:intron 40.0%
! GAATAATATGATGGAGGACC+GGG - chr8_2:8233040-8233059 None:intergenic 40.0%
GCTCCTTTATATCCTATGTG+GGG + chr8_2:8233082-8233101 Msa1231940:intron 40.0%
TGTCCCCACATAGGATATAA+AGG - chr8_2:8233088-8233107 None:intergenic 40.0%
AGCCTACAGAAAATTGGCAT+TGG + chr8_2:8233167-8233186 Msa1231940:intron 40.0%
! TTGGCATTGGAAACCATTTC+CGG + chr8_2:8233180-8233199 Msa1231940:intron 40.0%
TATGATACTCACCTGAGAGT+AGG - chr8_2:8233387-8233406 None:intergenic 40.0%
AGTGACTAACGCTAATGCAA+TGG + chr8_2:8233572-8233591 Msa1231940:CDS 40.0%
CATTACCGGATAATCGTCAA+AGG - chr8_2:8233625-8233644 None:intergenic 40.0%
GCCCCTACTATACAAACATT+TGG - chr8_2:8234041-8234060 None:intergenic 40.0%
TCTACTTGGTTGTTGCATCA+AGG - chr8_2:8234572-8234591 None:intergenic 40.0%
AGTGCTACATGACTTCTACT+TGG - chr8_2:8234586-8234605 None:intergenic 40.0%
ATGTCTGTGTTTGTCTGTGT+CGG + chr8_2:8234665-8234684 Msa1231940:three_prime_UTR 40.0%
!!! TTTGTTTTGGCACGTGATGA+TGG - chr8_2:8234722-8234741 None:intergenic 40.0%
TGTGAGCATCAACAAATGTG+TGG - chr8_2:8234810-8234829 None:intergenic 40.0%
TGGGTGTGGGAATGTAATAA+TGG + chr8_2:8234932-8234951 Msa1231940:three_prime_UTR 40.0%
AGATGAGTTCAAAGGCTTGA+CGG + chr8_2:8234984-8235003 Msa1231940:three_prime_UTR 40.0%
ACTAGTATCCTGAAGGAACG+AGG + chr8_2:8228827-8228846 Msa1231940:five_prime_UTR 45.0%
CTAGTATCCTGAAGGAACGA+GGG + chr8_2:8228828-8228847 Msa1231940:five_prime_UTR 45.0%
TAGTATCCTGAAGGAACGAG+GGG + chr8_2:8228829-8228848 Msa1231940:five_prime_UTR 45.0%
!!! GTAGCTTTTAGAGGGTGTTG+TGG + chr8_2:8228900-8228919 Msa1231940:five_prime_UTR 45.0%
!! TACTGTTTTCTGAAAGGGCC+AGG + chr8_2:8229393-8229412 Msa1231940:intron 45.0%
! CGCTGCGAAGCTTTATATTG+CGG + chr8_2:8229482-8229501 Msa1231940:intron 45.0%
! ACCGCAATTCCAGGATTTTG+AGG - chr8_2:8229556-8229575 None:intergenic 45.0%
! GGCTGGGGTTAATCTTTTCA+TGG + chr8_2:8229658-8229677 Msa1231940:intron 45.0%
AAAGGATGCTAAGCCAGCTA+TGG + chr8_2:8229866-8229885 Msa1231940:exon 45.0%
TTGGCAGTACAAACCATAGC+TGG - chr8_2:8229882-8229901 None:intergenic 45.0%
GAGAAGAACCTTGAGTCCTT+TGG - chr8_2:8229931-8229950 None:intergenic 45.0%
ACTCAAGGTTCTTCTCCTTG+AGG + chr8_2:8229935-8229954 Msa1231940:CDS 45.0%
AAGAACAAAGCTTGAGGCCA+TGG + chr8_2:8229983-8230002 Msa1231940:CDS 45.0%
! CTTGAGGCCATGGACTATAA+TGG + chr8_2:8229993-8230012 Msa1231940:CDS 45.0%
GGCTGGGGATATGTAAAACT+TGG - chr8_2:8230311-8230330 None:intergenic 45.0%
TGGTAATTTGGACTTCGGCT+GGG - chr8_2:8230327-8230346 None:intergenic 45.0%
TAAAACCCTCCGGTTCATAG+GGG - chr8_2:8230360-8230379 None:intergenic 45.0%
CTAAAACCCTCCGGTTCATA+GGG - chr8_2:8230361-8230380 None:intergenic 45.0%
! TCTAAAACCCTCCGGTTCAT+AGG - chr8_2:8230362-8230381 None:intergenic 45.0%
TCTACTTGAGACTGCTGACA+AGG - chr8_2:8230851-8230870 None:intergenic 45.0%
GTGAGTTCAAGCAGTTGTGA+GGG + chr8_2:8231100-8231119 Msa1231940:CDS 45.0%
!! ACTGATGGTTGGTAAGTCCT+TGG - chr8_2:8231149-8231168 None:intergenic 45.0%
CACCATGATGAAGTGCATAG+CGG + chr8_2:8231486-8231505 Msa1231940:CDS 45.0%
TACCGCTATGCACTTCATCA+TGG - chr8_2:8231491-8231510 None:intergenic 45.0%
CGAAGCAGCAAAGAGTAAAG+AGG - chr8_2:8231721-8231740 None:intergenic 45.0%
TCAAACAGGCGTTCAATGCT+GGG + chr8_2:8231914-8231933 Msa1231940:intron 45.0%
GAGCAGGATAATGTTCATGG+TGG - chr8_2:8232077-8232096 None:intergenic 45.0%
AACCCCACAATTGAAACAGG+TGG + chr8_2:8232101-8232120 Msa1231940:CDS 45.0%
ACCCCACAATTGAAACAGGT+GGG + chr8_2:8232102-8232121 Msa1231940:CDS 45.0%
TCCCACCTGTTTCAATTGTG+GGG - chr8_2:8232106-8232125 None:intergenic 45.0%
CTTCCCACCTGTTTCAATTG+TGG - chr8_2:8232108-8232127 None:intergenic 45.0%
! TGGAGCAATTAGTCTGCTCT+TGG - chr8_2:8232152-8232171 None:intergenic 45.0%
AGAGCAGACTAATTGCTCCA+CGG + chr8_2:8232152-8232171 Msa1231940:CDS 45.0%
! TGGAGCAATTAGTCTGCTCT+TGG - chr8_2:8232152-8232171 None:intergenic 45.0%
AGAGCAGACTAATTGCTCCA+CGG + chr8_2:8232152-8232171 Msa1231940:CDS 45.0%
TGCTCCACGGAAAAAGAAAG+TGG + chr8_2:8232198-8232217 Msa1231940:CDS 45.0%
GCTCCACGGAAAAAGAAAGT+GGG + chr8_2:8232199-8232218 Msa1231940:CDS 45.0%
CTCCACGGAAAAAGAAAGTG+GGG + chr8_2:8232200-8232219 Msa1231940:CDS 45.0%
! TTCCCCACTTTCTTTTTCCG+TGG - chr8_2:8232205-8232224 None:intergenic 45.0%
! TTTGGTTCAGAAGGAAGAGG+AGG + chr8_2:8232311-8232330 Msa1231940:CDS 45.0%
! ACTCTCACACTTAGAAGCGT+CGG - chr8_2:8232343-8232362 None:intergenic 45.0%
TACTTTGGTCTCAGGTAGAC+TGG + chr8_2:8232633-8232652 Msa1231940:intron 45.0%
TAATGTGGCAAGCCATCTTC+AGG + chr8_2:8232766-8232785 Msa1231940:CDS 45.0%
!! AGTTTTTGGAAACCGTGGGA+AGG - chr8_2:8232802-8232821 None:intergenic 45.0%
GAGACATATCTTACCGAAGC+AGG + chr8_2:8232946-8232965 Msa1231940:intron 45.0%
TCTTACCGAAGCAGGATGAT+CGG + chr8_2:8232954-8232973 Msa1231940:intron 45.0%
CATTTCCGATCATCCTGCTT+CGG - chr8_2:8232962-8232981 None:intergenic 45.0%
ATCCAAGGGATCCAACTCAA+AGG + chr8_2:8232987-8233006 Msa1231940:intron 45.0%
!! TTCCTTTGAGTTGGATCCCT+TGG - chr8_2:8232992-8233011 None:intergenic 45.0%
TAAAGGAGCTAGAGGAGGAA+GGG - chr8_2:8233071-8233090 None:intergenic 45.0%
ATAAAGGAGCTAGAGGAGGA+AGG - chr8_2:8233072-8233091 None:intergenic 45.0%
GGATATAAAGGAGCTAGAGG+AGG - chr8_2:8233076-8233095 None:intergenic 45.0%
TATCCTATGTGGGGACAATC+TGG + chr8_2:8233091-8233110 Msa1231940:intron 45.0%
! GGGACAATCTGGAACTCAAA+CGG + chr8_2:8233102-8233121 Msa1231940:intron 45.0%
! TTTTCTGTAGGCTGCCACAT+GGG - chr8_2:8233160-8233179 None:intergenic 45.0%
! ATTTTCTGTAGGCTGCCACA+TGG - chr8_2:8233161-8233180 None:intergenic 45.0%
TGTGGCAGCCTACAGAAAAT+TGG + chr8_2:8233161-8233180 Msa1231940:intron 45.0%
! TGGCATTGGAAACCATTTCC+GGG + chr8_2:8233181-8233200 Msa1231940:intron 45.0%
TAGGAATAGCAAGGAGGTTG+AGG - chr8_2:8233368-8233387 None:intergenic 45.0%
TGAGAGTAGGAATAGCAAGG+AGG - chr8_2:8233374-8233393 None:intergenic 45.0%
!! TCCTTGCTATTCCTACTCTC+AGG + chr8_2:8233373-8233392 Msa1231940:CDS 45.0%
ACCTGAGAGTAGGAATAGCA+AGG - chr8_2:8233377-8233396 None:intergenic 45.0%
GCATTTGTAAGACACGTGCT+CGG - chr8_2:8233881-8233900 None:intergenic 45.0%
TTGGCTGAGCTTTCAAGACA+AGG + chr8_2:8234286-8234305 Msa1231940:CDS 45.0%
GAGAACCATTGTAGCTTGGA+GGG - chr8_2:8234324-8234343 None:intergenic 45.0%
AGAGAACCATTGTAGCTTGG+AGG - chr8_2:8234325-8234344 None:intergenic 45.0%
GGAAGAGAACCATTGTAGCT+TGG - chr8_2:8234328-8234347 None:intergenic 45.0%
ACAACAGGGTCATGATCTAG+TGG - chr8_2:8234412-8234431 None:intergenic 45.0%
TTGACTGGGAATAGGAGAAC+TGG + chr8_2:8234475-8234494 Msa1231940:three_prime_UTR 45.0%
TGACTGGGAATAGGAGAACT+GGG + chr8_2:8234476-8234495 Msa1231940:three_prime_UTR 45.0%
! GGTTGTTGTTGGTGTGATGT+GGG - chr8_2:8234536-8234555 None:intergenic 45.0%
! TGGTTGTTGTTGGTGTGATG+TGG - chr8_2:8234537-8234556 None:intergenic 45.0%
!! TCATGTAGCACTGACACTTG+AGG + chr8_2:8234594-8234613 Msa1231940:three_prime_UTR 45.0%
!! TTTGGCACGTGATGATGGAT+AGG - chr8_2:8234717-8234736 None:intergenic 45.0%
AAAAATGAAGTGGGGGACAC+CGG + chr8_2:8234756-8234775 Msa1231940:three_prime_UTR 45.0%
!!! TGGGGTTGTATTTTTGGGTG+TGG + chr8_2:8234918-8234937 Msa1231940:three_prime_UTR 45.0%
!!! GGGGTTGTATTTTTGGGTGT+GGG + chr8_2:8234919-8234938 Msa1231940:three_prime_UTR 45.0%
!! TAGTTATTTAAATTATTTAT+GGG + chr8_2:8233499-8233518 Msa1231940:intron 5.0%
!! CAGAAGTGCTGTCTTCCTCA+AGG - chr8_2:8229953-8229972 None:intergenic 50.0%
GGTAATTTGGACTTCGGCTG+GGG - chr8_2:8230326-8230345 None:intergenic 50.0%
CTGGTAATTTGGACTTCGGC+TGG - chr8_2:8230328-8230347 None:intergenic 50.0%
GGAAGGGGACTCTGGTAATT+TGG - chr8_2:8230339-8230358 None:intergenic 50.0%
GGTGAGTTCAAGCAGTTGTG+AGG + chr8_2:8231099-8231118 Msa1231940:intron 50.0%
AGTTCAAGCAGTTGTGAGGG+AGG + chr8_2:8231103-8231122 Msa1231940:CDS 50.0%
TGTAGAGGGGGAACATGACA+TGG + chr8_2:8231350-8231369 Msa1231940:intron 50.0%
TCTCAGCAAACCACTCTCTG+AGG + chr8_2:8231772-8231791 Msa1231940:CDS 50.0%
TTGGCAGCATGTGGTTCACA+AGG + chr8_2:8231811-8231830 Msa1231940:CDS 50.0%
CTCAAACAGGCGTTCAATGC+TGG + chr8_2:8231913-8231932 Msa1231940:intron 50.0%
CAAACAGGCGTTCAATGCTG+GGG + chr8_2:8231915-8231934 Msa1231940:intron 50.0%
GAGGCTACAGATTCCTTGAC+AGG - chr8_2:8231967-8231986 None:intergenic 50.0%
AATTGTGGGGTTGAAGGAGC+AGG - chr8_2:8232093-8232112 None:intergenic 50.0%
! CTGCTCTTGGCAATTTTCCG+TGG - chr8_2:8232172-8232191 None:intergenic 50.0%
TGAAAGTGGAGGGCTTGACA+AGG + chr8_2:8232741-8232760 Msa1231940:CDS 50.0%
GGGCTTGACAAGGCATAATG+TGG + chr8_2:8232751-8232770 Msa1231940:CDS 50.0%
CGAAGCAGGATGATCGGAAA+TGG + chr8_2:8232960-8232979 Msa1231940:intron 50.0%
GTTCCAGATTGTCCCCACAT+AGG - chr8_2:8233097-8233116 None:intergenic 50.0%
! CAATCTGGAACTCAAACGGC+TGG + chr8_2:8233106-8233125 Msa1231940:intron 50.0%
! GCCATTCTGGTTATCCCATG+TGG + chr8_2:8233143-8233162 Msa1231940:intron 50.0%
GCCACATGGGATAACCAGAA+TGG - chr8_2:8233147-8233166 None:intergenic 50.0%
! GGCATTGGAAACCATTTCCG+GGG + chr8_2:8233182-8233201 Msa1231940:intron 50.0%
GCATTGGAAACCATTTCCGG+GGG + chr8_2:8233183-8233202 Msa1231940:intron 50.0%
TGCAGATGCATCCAGATGCA+TGG + chr8_2:8233321-8233340 Msa1231940:intron 50.0%
GCAGATGCATCCAGATGCAT+GGG + chr8_2:8233322-8233341 Msa1231940:intron 50.0%
CAGATGCATCCAGATGCATG+GGG + chr8_2:8233323-8233342 Msa1231940:intron 50.0%
GAATAGCAAGGAGGTTGAGG+CGG - chr8_2:8233365-8233384 None:intergenic 50.0%
GCATTAGCGTTAGTCACTGC+AGG - chr8_2:8233570-8233589 None:intergenic 50.0%
CAATGCATACATGCAGGCAG+AGG + chr8_2:8234174-8234193 Msa1231940:intron 50.0%
AGGAGGCGATAAGTAAGCCA+TGG + chr8_2:8234218-8234237 Msa1231940:CDS 50.0%
CCTATTGGCAAAGGTAGCCA+TGG - chr8_2:8234238-8234257 None:intergenic 50.0%
CCATGGCTACCTTTGCCAAT+AGG + chr8_2:8234235-8234254 Msa1231940:CDS 50.0%
! GGTTTGAGGCCTATTGGCAA+AGG - chr8_2:8234247-8234266 None:intergenic 50.0%
! GAAGGAGGTTTGAGGCCTAT+TGG - chr8_2:8234253-8234272 None:intergenic 50.0%
TATCCGTGGAAGGAGGTTTG+AGG - chr8_2:8234261-8234280 None:intergenic 50.0%
AACACACTATCCGTGGAAGG+AGG - chr8_2:8234268-8234287 None:intergenic 50.0%
TCCTTCCACGGATAGTGTGT+TGG + chr8_2:8234267-8234286 Msa1231940:CDS 50.0%
ATTGTAGCTTGGAGGGATGC+TGG - chr8_2:8234317-8234336 None:intergenic 50.0%
AGCATCCCTCCAAGCTACAA+TGG + chr8_2:8234316-8234335 Msa1231940:CDS 50.0%
TGTTGGTGTGATGTGGGAGT+GGG - chr8_2:8234530-8234549 None:intergenic 50.0%
TTGTTGGTGTGATGTGGGAG+TGG - chr8_2:8234531-8234550 None:intergenic 50.0%
CTACTTGGGCGGTTGAGAAT+TGG + chr8_2:8234784-8234803 Msa1231940:three_prime_UTR 50.0%
ATGCTACCCCTCGTTCCTTC+AGG - chr8_2:8228838-8228857 None:intergenic 55.0%
GAAGGAACGAGGGGTAGCAT+TGG + chr8_2:8228838-8228857 Msa1231940:five_prime_UTR 55.0%
! GATGACATTTGCTGCTGGCC+TGG - chr8_2:8229414-8229433 None:intergenic 55.0%
TTCATAGGGGAAGGGGACTC+TGG - chr8_2:8230347-8230366 None:intergenic 55.0%
AGTCCCCTTCCCCTATGAAC+CGG + chr8_2:8230348-8230367 Msa1231940:intron 55.0%
CTGAGCTTGTCCTCAGAGAG+TGG - chr8_2:8231785-8231804 None:intergenic 55.0%
GTGAAGGCAGTGGAGCAACT+AGG + chr8_2:8232680-8232699 Msa1231940:CDS 55.0%
GATGGAGGACCGGGCATAAT+TGG - chr8_2:8233031-8233050 None:intergenic 55.0%
GAGCTAGAGGAGGAAGGGTA+TGG - chr8_2:8233066-8233085 None:intergenic 55.0%
AACTCAAACGGCTGGCATGC+AGG + chr8_2:8233114-8233133 Msa1231940:intron 55.0%
AAACGGCTGGCATGCAGGTT+TGG + chr8_2:8233119-8233138 Msa1231940:intron 55.0%
AACGGCTGGCATGCAGGTTT+GGG + chr8_2:8233120-8233139 Msa1231940:intron 55.0%
! ATGCAGGTTTGGGGCCATTC+TGG + chr8_2:8233130-8233149 Msa1231940:intron 55.0%
TGCATACATGCAGGCAGAGG+AGG + chr8_2:8234177-8234196 Msa1231940:intron 55.0%
AGGCCTCAAACCTCCTTCCA+CGG + chr8_2:8234255-8234274 Msa1231940:CDS 55.0%
GCCAACACACTATCCGTGGA+AGG - chr8_2:8234271-8234290 None:intergenic 55.0%
CTCAGCCAACACACTATCCG+TGG - chr8_2:8234275-8234294 None:intergenic 55.0%
TTGGTGTGATGTGGGAGTGG+GGG - chr8_2:8234528-8234547 None:intergenic 55.0%
GTTGGTGTGATGTGGGAGTG+GGG - chr8_2:8234529-8234548 None:intergenic 55.0%
! GGACACCGGTTAGGCTACTT+GGG + chr8_2:8234770-8234789 Msa1231940:three_prime_UTR 55.0%
AACCGCCCAAGTAGCCTAAC+CGG - chr8_2:8234778-8234797 None:intergenic 55.0%
CCTCCGGTTCATAGGGGAAG+GGG - chr8_2:8230354-8230373 None:intergenic 60.0%
CCCTCCGGTTCATAGGGGAA+GGG - chr8_2:8230355-8230374 None:intergenic 60.0%
CCCTTCCCCTATGAACCGGA+GGG + chr8_2:8230352-8230371 Msa1231940:intron 60.0%
ACCCTCCGGTTCATAGGGGA+AGG - chr8_2:8230356-8230375 None:intergenic 60.0%
ACGGCTGGCATGCAGGTTTG+GGG + chr8_2:8233121-8233140 Msa1231940:intron 60.0%
GTTGAGGCGGAGGTAACACC+GGG - chr8_2:8233352-8233371 None:intergenic 60.0%
GGTTGAGGCGGAGGTAACAC+CGG - chr8_2:8233353-8233372 None:intergenic 60.0%
TAGCAAGGAGGTTGAGGCGG+AGG - chr8_2:8233362-8233381 None:intergenic 60.0%
GGGAGTGGGGGGACCTAATA+TGG - chr8_2:8234516-8234535 None:intergenic 60.0%
TGGTGTGATGTGGGAGTGGG+GGG - chr8_2:8234527-8234546 None:intergenic 60.0%
! TGAAGTGGGGGACACCGGTT+AGG + chr8_2:8234761-8234780 Msa1231940:three_prime_UTR 60.0%
! GGGACACCGGTTAGGCTACT+TGG + chr8_2:8234769-8234788 Msa1231940:three_prime_UTR 60.0%
! CACCGGTTAGGCTACTTGGG+CGG + chr8_2:8234773-8234792 Msa1231940:three_prime_UTR 60.0%
CCCCTTCCCCTATGAACCGG+AGG + chr8_2:8230351-8230370 Msa1231940:intron 65.0%
TCCAGATGCATGGGGCTGCC+CGG + chr8_2:8233331-8233350 Msa1231940:CDS 65.0%
ACCGGGCAGCCCCATGCATC+TGG - chr8_2:8233335-8233354 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 8228716 8235146 8228716 ID=Msa1231940;Name=Msa1231940
chr8_2 mRNA 8228716 8235146 8228716 ID=Msa1231940-mRNA-1;Parent=Msa1231940;Name=Msa1231940-mRNA-1;_AED=0.17;_eAED=0.17;_QI=459|0.9|1|1|0.8|0.72|11|792|473
chr8_2 exon 8228716 8229126 8228716 ID=Msa1231940-mRNA-1:exon:3138;Parent=Msa1231940-mRNA-1
chr8_2 exon 8229837 8230014 8229837 ID=Msa1231940-mRNA-1:exon:3139;Parent=Msa1231940-mRNA-1
chr8_2 exon 8230821 8230900 8230821 ID=Msa1231940-mRNA-1:exon:3140;Parent=Msa1231940-mRNA-1
chr8_2 exon 8231100 8231166 8231100 ID=Msa1231940-mRNA-1:exon:3141;Parent=Msa1231940-mRNA-1
chr8_2 exon 8231461 8231507 8231461 ID=Msa1231940-mRNA-1:exon:3142;Parent=Msa1231940-mRNA-1
chr8_2 exon 8231755 8231832 8231755 ID=Msa1231940-mRNA-1:exon:3143;Parent=Msa1231940-mRNA-1
chr8_2 exon 8231922 8232488 8231922 ID=Msa1231940-mRNA-1:exon:3144;Parent=Msa1231940-mRNA-1
chr8_2 exon 8232647 8232787 8232647 ID=Msa1231940-mRNA-1:exon:3145;Parent=Msa1231940-mRNA-1
chr8_2 exon 8233326 8233394 8233326 ID=Msa1231940-mRNA-1:exon:3146;Parent=Msa1231940-mRNA-1
chr8_2 exon 8233561 8233638 8233561 ID=Msa1231940-mRNA-1:exon:3147;Parent=Msa1231940-mRNA-1
chr8_2 exon 8234190 8235146 8234190 ID=Msa1231940-mRNA-1:exon:3148;Parent=Msa1231940-mRNA-1
chr8_2 five_prime_UTR 8228716 8229126 8228716 ID=Msa1231940-mRNA-1:five_prime_utr;Parent=Msa1231940-mRNA-1
chr8_2 five_prime_UTR 8229837 8229884 8229837 ID=Msa1231940-mRNA-1:five_prime_utr;Parent=Msa1231940-mRNA-1
chr8_2 CDS 8229885 8230014 8229885 ID=Msa1231940-mRNA-1:cds;Parent=Msa1231940-mRNA-1
chr8_2 CDS 8230821 8230900 8230821 ID=Msa1231940-mRNA-1:cds;Parent=Msa1231940-mRNA-1
chr8_2 CDS 8231100 8231166 8231100 ID=Msa1231940-mRNA-1:cds;Parent=Msa1231940-mRNA-1
chr8_2 CDS 8231461 8231507 8231461 ID=Msa1231940-mRNA-1:cds;Parent=Msa1231940-mRNA-1
chr8_2 CDS 8231755 8231832 8231755 ID=Msa1231940-mRNA-1:cds;Parent=Msa1231940-mRNA-1
chr8_2 CDS 8231922 8232488 8231922 ID=Msa1231940-mRNA-1:cds;Parent=Msa1231940-mRNA-1
chr8_2 CDS 8232647 8232787 8232647 ID=Msa1231940-mRNA-1:cds;Parent=Msa1231940-mRNA-1
chr8_2 CDS 8233326 8233394 8233326 ID=Msa1231940-mRNA-1:cds;Parent=Msa1231940-mRNA-1
chr8_2 CDS 8233561 8233638 8233561 ID=Msa1231940-mRNA-1:cds;Parent=Msa1231940-mRNA-1
chr8_2 CDS 8234190 8234354 8234190 ID=Msa1231940-mRNA-1:cds;Parent=Msa1231940-mRNA-1
chr8_2 three_prime_UTR 8234355 8235146 8234355 ID=Msa1231940-mRNA-1:three_prime_utr;Parent=Msa1231940-mRNA-1
Gene Sequence

>Msa1231940

ATGGTTTGTACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTCCTTGAGGAAGACAGCACTTCTGTTTCCGAGATAAGAACAAAGCTTGAGGCCATGGACTATAATGTTTCGATATTCTGTGATGTGAATGAAGCCTTGTCAGCAGTCTCAAGTAGACCTGAAGATTTCCATATAGCCATAGTGGAGGTGAGTTCAAGCAGTTGTGAGGGAGGCTTCAAATTTCTTGAGAATGCCAAGGACTTACCAACCATCATGACTTCAAATAGCGATTGTCTGAACACCATGATGAAGTGCATAGCGCTTGGAGCAGTGGAGTTTCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATTTGGCAGCATGTGGTTCACAAGGCGTTCAATGCTGGGGTAAGTGCGCTGTCTGAATCACTGAAACCTGTCAAGGAATCTGTAGCCTCCATCTTGCAGATTCAAACAGATAACGAACAAAATGAAAGTAAAGCCTCAATCAAGTTAGAGCAAGTATTGAGGTCTTCTGACAATGACCACCATGAACATTATCCTGCTCCTTCAACCCCACAATTGAAACAGGTGGGAAGATTACTTGATGATGGGGATTGCCAAGAGCAGACTAATTGCTCCACGGAAAATTGCCAAGAGCAGACTAATTGCTCCACGGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAATTACATGTGAAAATTTGAATGCTGAAAGTATTACTCAACAAACAAAATCTGAAGCTACTTTGGTTCAGAAGGAAGAGGAGGAATTTGCCGACGCTTCTAAGTGTGAGAGTGTTGTTTCACCACAGTTACCAAATGTGAAGGTTCTAAACAATAGTGAAAGTAATACAACATCTGCAAATAAAGTAGGTGTTCGCAGTCATAAATGTGAGATAAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCACGCTATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGATGCATCCAGATGCATGGGGCTGCCCGGTGTTACCTCCGCCTCAACCTCCTTGCTATTCCTACTCTCAGGATATACCTGCAGTGACTAACGCTAATGCAATGGATTACACGTTTAGCATACCACATAGTTCCTTTGACGATTATCCGGCAGAGGAGGTTATTGACAATGTTGTGAAGGAGGCGATAAGTAAGCCATGGCTACCTTTGCCAATAGGCCTCAAACCTCCTTCCACGGATAGTGTGTTGGCTGAGCTTTCAAGACAAGGCATTTCCAGCATCCCTCCAAGCTACAATGGTTCTCTTCCCTATTGA
Protein sequence

>Msa1231940

MVCTANDLQEWKDFPKGLKVLLLEEDSTSVSEIRTKLEAMDYNVSIFCDVNEALSAVSSRPEDFHIAIVEVSSSSCEGGFKFLENAKDLPTIMTSNSDCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGVSALSESLKPVKESVASILQIQTDNEQNESKASIKLEQVLRSSDNDHHEHYPAPSTPQLKQVGRLLDDGDCQEQTNCSTENCQEQTNCSTEKESGEHDGESKSVEITCENLNAESITQQTKSEATLVQKEEEEFADASKCESVVSPQLPNVKVLNNSESNTTSANKVGVRSHKCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDHAIPSRILDLMKVEGLTRHNVASHLQMHPDAWGCPVLPPPQPPCYSYSQDIPAVTNANAMDYTFSIPHSSFDDYPAEEVIDNVVKEAISKPWLPLPIGLKPPSTDSVLAELSRQGISSIPPSYNGSLPY*