AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1236800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236800 MtrunA17_Chr8g0347381 97.739 575 13 0 39 613 1 575 0.0 1165
Msa1236800 MtrunA17_Chr8g0347391 87.759 580 71 0 34 613 3 582 0.0 1065
Msa1236800 MtrunA17_Chr8g0347421 87.873 569 69 0 39 607 1 569 0.0 1045
Msa1236800 MtrunA17_Chr7g0275471 75.302 579 139 1 39 613 1 579 0.0 931
Msa1236800 MtrunA17_Chr8g0347431 84.500 400 62 0 214 613 2 401 0.0 723
Msa1236800 MtrunA17_Chr5g0401641 38.144 582 341 8 43 611 15 590 1.50e-142 426
Msa1236800 MtrunA17_Chr5g0421331 37.876 565 337 8 50 609 21 576 4.73e-134 404
Msa1236800 MtrunA17_Chr2g0318991 35.849 583 347 6 49 609 14 591 7.11e-128 389
Msa1236800 MtrunA17_Chr8g0361551 35.345 580 351 6 49 609 15 589 7.36e-128 389
Msa1236800 MtrunA17_Chr8g0352391 56.875 320 86 3 298 613 1 272 5.46e-120 357
Msa1236800 MtrunA17_Chr1g0195771 35.829 561 337 11 49 588 54 612 1.49e-114 355
Msa1236800 MtrunA17_Chr4g0022401 42.469 405 217 6 47 435 17 421 1.57e-112 343
Msa1236800 MtrunA17_Chr5g0401631 41.207 381 209 7 237 611 1 372 1.87e-101 313
Msa1236800 MtrunA17_Chr4g0023301 33.871 496 304 8 130 610 6 492 9.33e-100 313
Msa1236800 MtrunA17_Chr7g0259291 32.696 575 352 14 49 599 5 568 1.35e-89 289
Msa1236800 MtrunA17_Chr1g0169871 70.621 177 48 2 355 527 138 314 2.04e-82 262
Msa1236800 MtrunA17_Chr1g0169871 75.000 64 16 0 48 111 37 100 1.50e-23 102
Msa1236800 MtrunA17_Chr8g0347441 77.273 132 30 0 39 170 1 132 8.53e-69 219
Msa1236800 MtrunA17_Chr4g0022391 54.494 178 79 1 435 612 11 186 7.70e-63 206
Msa1236800 MtrunA17_Chr8g0352401 75.833 120 29 0 48 167 1 120 1.09e-58 192
Msa1236800 MtrunA17_Chr7g0259401 34.074 270 143 7 178 442 10 249 4.23e-38 141
Msa1236800 MtrunA17_Chr5g0401621 35.065 154 99 1 43 195 15 168 3.74e-23 97.1
Msa1236800 MtrunA17_Chr4g0023291 48.193 83 43 0 49 131 30 112 2.26e-18 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236800 AT2G46370.4 65.077 587 200 4 29 612 2 586 0.0 811
Msa1236800 AT2G46370.1 65.858 577 192 4 39 612 1 575 0.0 808
Msa1236800 AT2G46370.2 65.858 577 192 4 39 612 1 575 0.0 808
Msa1236800 AT2G46370.3 66.867 498 162 2 116 612 1 496 0.0 723
Msa1236800 AT4G03400.2 48.034 585 282 7 49 613 9 591 0.0 563
Msa1236800 AT4G03400.1 48.034 585 282 7 49 613 9 591 0.0 563
Msa1236800 AT2G23170.1 39.123 570 334 7 50 611 21 585 2.50e-141 424
Msa1236800 AT4G37390.1 38.435 575 334 9 50 609 22 591 3.87e-137 413
Msa1236800 AT1G23160.1 37.889 578 333 10 47 610 13 578 7.55e-137 411
Msa1236800 AT4G27260.1 37.311 595 343 7 40 609 7 596 1.23e-136 412
Msa1236800 AT2G14960.1 38.421 570 332 9 50 611 21 579 5.44e-136 410
Msa1236800 AT1G59500.1 39.123 570 331 9 50 609 22 585 3.40e-133 403
Msa1236800 AT5G13320.3 37.478 579 338 10 46 609 5 574 6.71e-133 401
Msa1236800 AT5G13320.1 37.478 579 338 10 46 609 5 574 6.71e-133 401
Msa1236800 AT5G13320.2 37.478 579 338 10 46 609 20 589 1.05e-132 401
Msa1236800 AT1G48660.1 36.155 567 345 8 52 609 7 565 1.65e-130 395
Msa1236800 AT1G48660.2 36.140 570 344 9 52 609 7 568 5.61e-130 394
Msa1236800 AT5G54510.1 36.760 574 339 6 55 609 28 596 3.07e-129 393
Msa1236800 AT5G51470.1 37.370 578 341 9 41 609 6 571 1.17e-126 385
Msa1236800 AT5G13360.1 37.457 582 334 12 47 609 9 579 7.04e-122 374
Msa1236800 AT5G13360.2 37.457 582 334 12 47 609 9 579 7.04e-122 374
Msa1236800 AT5G13360.3 37.457 582 334 12 47 609 87 657 3.45e-121 374
Msa1236800 AT5G13370.1 35.945 587 350 12 42 609 1 580 9.45e-120 368
Msa1236800 AT5G13350.1 35.195 591 349 15 42 609 1 580 2.26e-119 367
Msa1236800 AT5G13350.2 35.195 591 349 15 42 609 1 580 2.26e-119 367
Msa1236800 AT2G47750.1 35.862 580 354 10 43 609 3 577 7.20e-117 360
Msa1236800 AT5G13380.1 35.602 573 341 13 55 609 47 609 1.77e-114 355
Msa1236800 AT1G28130.1 34.057 599 348 12 47 609 9 596 1.52e-111 347
Msa1236800 AT5G51470.2 36.853 483 289 6 136 609 6 481 3.27e-101 317
Msa1236800 AT1G48670.1 32.332 566 315 11 54 609 10 517 8.67e-100 314
Msa1236800 AT1G48670.2 35.294 408 250 6 210 609 5 406 4.74e-89 282
Msa1236800 AT1G28130.2 36.429 420 224 9 223 609 44 453 6.23e-85 273
Msa1236800 AT1G48690.1 34.197 193 112 4 52 238 7 190 2.72e-24 100

Find 125 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTAAGGCCTTGCCATTT+TGG 0.173440 8_2:+15980539 None:intergenic
ACACATGCCTTGAAGCTTTC+AGG 0.188228 8_2:+15981450 None:intergenic
GGAAACACTGAAGAAGATTT+TGG 0.215335 8_2:-15981529 Msa1236800:CDS
GTAAAATATTTATATATATA+AGG 0.218639 8_2:+15978097 None:intergenic
CAGGACACTATGTTATCTTT+TGG 0.231173 8_2:-15978476 Msa1236800:CDS
ACAATTGATTAAATTCAATA+AGG 0.232011 8_2:-15978167 Msa1236800:exon
AACATAGTGTCCTGGTTCTT+TGG 0.254133 8_2:+15978485 None:intergenic
CCTTTGTTGACTTCTGAGTA+TGG 0.254938 8_2:-15979986 Msa1236800:CDS
TCAGAACCTTTGAACAAGTT+TGG 0.258443 8_2:-15980264 Msa1236800:CDS
TAGAGTGATTGGTGAAAATT+AGG 0.278144 8_2:+15980370 None:intergenic
ATTGGTCACTTACAAAGATT+TGG 0.278435 8_2:-15981424 Msa1236800:CDS
GCTAACTCAGGAGCCTCTTT+AGG 0.283945 8_2:+15979929 None:intergenic
CTTGAACATTATGTTGGATT+AGG 0.286844 8_2:-15978297 Msa1236800:CDS
TGTGTTCTTGTCAATGTTGA+TGG 0.287226 8_2:+15978602 None:intergenic
CATAATGTTCAAGAATCTTC+TGG 0.290500 8_2:+15978307 None:intergenic
CAGAACCTTTGAACAAGTTT+GGG 0.324841 8_2:-15980263 Msa1236800:CDS
CAATTGATTAAATTCAATAA+GGG 0.338269 8_2:-15978166 Msa1236800:exon
AACATATATGTGACAAAATC+TGG 0.339192 8_2:+15978062 None:intergenic
TGGATCAAGTTAGCTAGTTC+AGG 0.340099 8_2:+15980145 None:intergenic
CCTTGAACATACTTGACATT+AGG 0.341198 8_2:+15980070 None:intergenic
TCAACTATTCTATTGATATA+AGG 0.342032 8_2:+15981399 None:intergenic
CTTTAAACTACTTATTAGAT+TGG 0.349459 8_2:+15978127 None:intergenic
ATTCCTTTGACACAACTTGA+TGG 0.354329 8_2:-15979866 Msa1236800:CDS
GTCGATGCCGCTGAATTTCA+TGG 0.367139 8_2:-15982924 None:intergenic
GTTGTTAGCTGAAGAGAAAA+TGG 0.368303 8_2:-15978541 Msa1236800:CDS
TTCATTGCATGCTTGTATCC+TGG 0.373701 8_2:+15980439 None:intergenic
AAGTTAGCTAGTTCAGGATT+TGG 0.373912 8_2:+15980151 None:intergenic
AGGGGATGTGGTAAAGGTTA+TGG 0.375137 8_2:-15978682 Msa1236800:CDS
TAAAATATTTATATATATAA+GGG 0.375710 8_2:+15978098 None:intergenic
GCTGAATACTTGCAGAGTTT+AGG 0.375997 8_2:-15981492 Msa1236800:CDS
TGATGAATGTTGCACATGTT+TGG 0.385814 8_2:-15978421 Msa1236800:CDS
CAAAGTGTTGCAAATATTGT+TGG 0.386965 8_2:-15978223 Msa1236800:CDS
GGGGATGTGGTAAAGGTTAT+GGG 0.400710 8_2:-15978681 Msa1236800:CDS
AACTGATCCTGAAAGCTTCA+AGG 0.401122 8_2:-15981457 Msa1236800:CDS
AGAGAGTTTCCTATCCAAAA+TGG 0.404103 8_2:-15980553 Msa1236800:CDS
AATGCATAGGATTGAGCAAT+TGG 0.406780 8_2:-15980117 Msa1236800:CDS
CCTAATGTCAAGTATGTTCA+AGG 0.408097 8_2:-15980070 Msa1236800:CDS
GTGCAGGCTTATACAGATAT+AGG 0.409763 8_2:-15978707 Msa1236800:intron
AGTATGGTTCTTCTGAAGGT+TGG 0.412179 8_2:-15979970 Msa1236800:CDS
TCCGAACAAGTCGGAGTTCA+AGG 0.425031 8_2:+15978340 None:intergenic
CAATCACTGCTATCTCCTTA+AGG 0.427592 8_2:-15981344 Msa1236800:intron
CTTAAGGAGATAGCAGTGAT+TGG 0.436756 8_2:+15981345 None:intergenic
GCAAACTATCACAAGCTAAA+GGG 0.436897 8_2:-15980504 Msa1236800:CDS
CCTGTTCCTAAAGGCAAAAG+AGG 0.441171 8_2:+15981133 None:intergenic
CAACAATATTTGCAACACTT+TGG 0.447856 8_2:+15978224 None:intergenic
TTCACATCAGTTAATCCAAC+TGG 0.449966 8_2:+15979824 None:intergenic
TCTGAGTATGGTTCTTCTGA+AGG 0.455124 8_2:-15979974 Msa1236800:CDS
TATATCAATAGAATAGTTGA+TGG 0.455629 8_2:-15981396 Msa1236800:CDS
ATGAAAGCACTTCAATCTCC+TGG 0.455873 8_2:-15980421 Msa1236800:CDS
TGCAACACTTTGGTGTTTGT+AGG 0.456160 8_2:+15978234 None:intergenic
AAGATTCTTGAACATTATGT+TGG 0.462415 8_2:-15978303 Msa1236800:CDS
GACACAACTTGATGGAACTA+AGG 0.462979 8_2:-15979858 Msa1236800:CDS
AATTCAAAGTAAGCAATTTG+AGG 0.463474 8_2:+15979890 None:intergenic
TAGGCTAGGGGATGTGGTAA+AGG 0.465598 8_2:-15978688 Msa1236800:CDS
TTGCAGAGTTTAGGACTCAA+TGG 0.466761 8_2:-15981483 Msa1236800:CDS
CAGATATAGGCTAGGGGATG+TGG 0.467515 8_2:-15978694 Msa1236800:CDS
CCCTTGAACTCCGACTTGTT+CGG 0.477568 8_2:-15978341 Msa1236800:CDS
GAGAGGCTAACAAAGGATGC+TGG 0.479734 8_2:-15981564 Msa1236800:CDS
GCTGCTGTAGATGAAGCTTA+AGG 0.486505 8_2:+15980525 None:intergenic
CAATGTTGATGGTGAGCATA+AGG 0.486689 8_2:+15978613 None:intergenic
TGTAGTTCTGGTACTAGTCA+AGG 0.489759 8_2:-15981218 Msa1236800:intron
AGCAAACTATCACAAGCTAA+AGG 0.491878 8_2:-15980505 Msa1236800:CDS
GCCAATGTATTCAGAAATCC+AGG 0.494020 8_2:-15980457 Msa1236800:CDS
AGAGGTGGCAGTAGAGTGAT+TGG 0.496209 8_2:+15980359 None:intergenic
GGATTAACTGATGTGAAGAT+TGG 0.505405 8_2:-15979818 Msa1236800:CDS
CTCTACTGCCACCTCTTATG+TGG 0.505432 8_2:-15980352 Msa1236800:CDS
TGCAAAGCAGTCCACATAAG+AGG 0.507954 8_2:+15980341 None:intergenic
GGATGCTGGGAATGTTCAAA+AGG 0.507958 8_2:-15981550 Msa1236800:CDS
GACATAGCAGTTCTAATGGA+TGG 0.509602 8_2:+15980187 None:intergenic
CTTCAAGGCATGTGTTCCAT+TGG 0.511917 8_2:-15981442 Msa1236800:CDS
TTCTTCCCAAACTTGTTCAA+AGG 0.512345 8_2:+15980258 None:intergenic
TCAAACAATTCATCATTCCA+TGG 0.514252 8_2:+15981179 None:intergenic
ATAGTAATACCTGTTCCTAA+AGG 0.516100 8_2:+15981124 None:intergenic
GAAGATTGGTGAAGATTATG+AGG 0.519278 8_2:-15979804 Msa1236800:CDS
GTTCCATCAAGTTGTGTCAA+AGG 0.519570 8_2:+15979863 None:intergenic
ACATCATGAGGGCTGCATCC+AGG 0.523792 8_2:+15980403 None:intergenic
TCAATCCTATGCATTTCTTG+TGG 0.525426 8_2:+15980125 None:intergenic
TTCAAATGTAAATCCTAAAG+AGG 0.532877 8_2:-15979942 Msa1236800:CDS
CTTATTACTGACATCAAAGA+AGG 0.535229 8_2:-15980235 Msa1236800:CDS
ATTTCTGAATACATTGGCTG+TGG 0.541655 8_2:+15980462 None:intergenic
AGGGATCATGACTGGTGCAA+TGG 0.543132 8_2:-15980050 Msa1236800:CDS
TTGATAACAGCTGCAGGTGA+AGG 0.545506 8_2:-15981648 Msa1236800:intron
TGAAGGAGTTGTGAAGATGA+AGG 0.551299 8_2:-15981631 Msa1236800:CDS
GCTTATACAGATATAGGCTA+GGG 0.552915 8_2:-15978701 Msa1236800:CDS
CCGAACAAGTCGGAGTTCAA+GGG 0.559483 8_2:+15978341 None:intergenic
AGAGGCTAACAAAGGATGCT+GGG 0.561325 8_2:-15981563 Msa1236800:CDS
TTGTCACATATATGTTTGTG+AGG 0.569410 8_2:-15978055 Msa1236800:three_prime_UTR
AAATCTTTGTAAGTGACCAA+TGG 0.572733 8_2:+15981426 None:intergenic
CAAAAGATAACATAGTGTCC+TGG 0.574844 8_2:+15978477 None:intergenic
GGCTTATACAGATATAGGCT+AGG 0.576800 8_2:-15978702 Msa1236800:CDS
TCCTGGATTTCTGAATACAT+TGG 0.580005 8_2:+15980456 None:intergenic
TTTCTCTTCAGCTAACAACA+TGG 0.580961 8_2:+15978545 None:intergenic
TATGTTCAAGGGATCATGAC+TGG 0.581973 8_2:-15980058 Msa1236800:CDS
CAAACTATCACAAGCTAAAG+GGG 0.586566 8_2:-15980503 Msa1236800:CDS
TTGATCCACAAGAAATGCAT+AGG 0.591375 8_2:-15980130 Msa1236800:CDS
GAATGATTTACAATTATCAG+TGG 0.599036 8_2:-15978577 Msa1236800:CDS
GAACAGCGGCATGGCAACGA+CGG 0.599700 8_2:-15982854 Msa1236800:CDS
AAGTGATAGAAGAATTTGAG+AGG 0.600729 8_2:-15981581 Msa1236800:CDS
CTAATGTCAAGTATGTTCAA+GGG 0.605318 8_2:-15980069 Msa1236800:CDS
AAGGTGGAGCTTGAGCCAGT+TGG 0.606144 8_2:-15979839 Msa1236800:CDS
ACAACATAAGTAGCTAACTC+AGG 0.606822 8_2:+15979917 None:intergenic
GGACTGAATATCACATCATG+AGG 0.611298 8_2:+15980391 None:intergenic
GTTAGTTCTAGAAAAGTCAA+AGG 0.611504 8_2:-15978372 Msa1236800:CDS
CAGCGGCATGGCAACGACGG+TGG 0.613557 8_2:-15982851 Msa1236800:intron
AATAATTGAGAAATTTGACA+TGG 0.619152 8_2:-15981607 Msa1236800:CDS
GTTAAGACACTATGCAGGAG+AGG 0.622561 8_2:-15980011 Msa1236800:CDS
ATAGGATTGAGCAATTGGTA+TGG 0.622644 8_2:-15980112 Msa1236800:CDS
TAGAAAAGTCAAAGGTATTG+CGG 0.623191 8_2:-15978364 Msa1236800:CDS
GAACTCCGACTTGTTCGGAA+AGG 0.630222 8_2:-15978336 Msa1236800:CDS
ACAACTTGATGGAACTAAGG+TGG 0.637434 8_2:-15979855 Msa1236800:CDS
AGAATTTGAGAGGCTAACAA+AGG 0.640125 8_2:-15981571 Msa1236800:CDS
ATGTTCCTTTCCGAACAAGT+CGG 0.642426 8_2:+15978331 None:intergenic
GTTTCCTATCCAAAATGGCA+AGG 0.646453 8_2:-15980548 Msa1236800:CDS
TGAGTCAGTTCAAGACACCT+AGG 0.648473 8_2:-15978266 Msa1236800:CDS
AAATCACATGAACAGCGGCA+TGG 0.649699 8_2:-15982863 Msa1236800:CDS
TTTGTAGGAGCAACACACCT+AGG 0.657654 8_2:+15978249 None:intergenic
ATTGATTTATCCAAAGAACC+AGG 0.665402 8_2:-15978495 Msa1236800:CDS
TAGGCTGCCATGAAATTCAG+CGG 0.667431 8_2:+15982917 None:intergenic
CCATACTCAGAAGTCAACAA+AGG 0.673745 8_2:+15979986 None:intergenic
AAAGCAGTCCACATAAGAGG+TGG 0.677682 8_2:+15980344 None:intergenic
GACTGAATATCACATCATGA+GGG 0.679391 8_2:+15980392 None:intergenic
CTTATACAGATATAGGCTAG+GGG 0.689485 8_2:-15978700 Msa1236800:CDS
CTGTAAAATCACATGAACAG+CGG 0.707689 8_2:-15982868 Msa1236800:CDS
AAACTATCACAAGCTAAAGG+GGG 0.711603 8_2:-15980502 Msa1236800:CDS
GGTTTGATATATCTGCACTG+TGG 0.735598 8_2:+15981154 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTATTAAAAAAATA+TGG + chr8_2:15978986-15979005 None:intergenic 0.0%
!! TAAAATATTTATATATATAA+GGG + chr8_2:15982803-15982822 None:intergenic 0.0%
!! AAAAAAATAATCTTCATTAT+GGG - chr8_2:15978623-15978642 Msa1236800:CDS 10.0%
!! AAGTAAAAAATAATTAATGA+TGG + chr8_2:15981913-15981932 None:intergenic 10.0%
!!! ACTAGATTTTTTTTTTTAAA+AGG + chr8_2:15982113-15982132 None:intergenic 10.0%
!! CTATAAAAAATATAAAAATG+GGG - chr8_2:15982870-15982889 Msa1236800:CDS 10.0%
!!! AGTTTTTTCTTTAATTAGAA+AGG - chr8_2:15978114-15978133 Msa1236800:three_prime_UTR 15.0%
!!! CATAATGAAGATTATTTTTT+TGG + chr8_2:15978624-15978643 None:intergenic 15.0%
!! CAAAAAAATAATCTTCATTA+TGG - chr8_2:15978622-15978641 Msa1236800:CDS 15.0%
!!! TTCATTTTATAAATCATTAC+TGG - chr8_2:15979935-15979954 Msa1236800:CDS 15.0%
!!! AAGGCTATTAATAAATATTT+TGG + chr8_2:15981144-15981163 None:intergenic 15.0%
!!! TATTAATCCCTATATATTTT+AGG + chr8_2:15981259-15981278 None:intergenic 15.0%
!! TAACTAATTTATAGAATGAT+AGG + chr8_2:15981311-15981330 None:intergenic 15.0%
!!! TACTTTTCATTTTTATTGTA+TGG - chr8_2:15981753-15981772 Msa1236800:intron 15.0%
!!! ACTTTTCATTTTTATTGTAT+GGG - chr8_2:15981754-15981773 Msa1236800:intron 15.0%
!!! ATTTATTTTTATAAATGGAG+AGG + chr8_2:15981821-15981840 None:intergenic 15.0%
!! TCTCCATTTATAAAAATAAA+TGG - chr8_2:15981820-15981839 Msa1236800:intron 15.0%
!!! CTTCCATTTATTTTTATAAA+TGG + chr8_2:15981826-15981845 None:intergenic 15.0%
!! AACATAATTAGACTTAATAA+AGG + chr8_2:15982148-15982167 None:intergenic 15.0%
!! ACAATTGATTAAATTCAATA+AGG - chr8_2:15982731-15982750 Msa1236800:intron 15.0%
!! CAATTGATTAAATTCAATAA+GGG - chr8_2:15982732-15982751 Msa1236800:intron 15.0%
!! AAGGACAATAATAAAAAAGT+GGG + chr8_2:15978651-15978670 None:intergenic 20.0%
!! AAAGGACAATAATAAAAAAG+TGG + chr8_2:15978652-15978671 None:intergenic 20.0%
!! AATAATTGAGAAATTTGACA+TGG - chr8_2:15979291-15979310 Msa1236800:intron 20.0%
!! TCAACTATTCTATTGATATA+AGG + chr8_2:15979502-15979521 None:intergenic 20.0%
!! TATATCAATAGAATAGTTGA+TGG - chr8_2:15979502-15979521 Msa1236800:intron 20.0%
!!! CTTCTTTTTAAAAACATCAT+CGG - chr8_2:15980144-15980163 Msa1236800:CDS 20.0%
!! AGAAACTACCTAAAATATAT+AGG - chr8_2:15981248-15981267 Msa1236800:intron 20.0%
!! GAAACTACCTAAAATATATA+GGG - chr8_2:15981249-15981268 Msa1236800:intron 20.0%
!! ATATATAGGGATTAATATGA+CGG - chr8_2:15981262-15981281 Msa1236800:intron 20.0%
!! TATAAATTAGTTAATGTGTC+AGG - chr8_2:15981318-15981337 Msa1236800:intron 20.0%
!!! TTTATGTTTTGTTTTTGTCT+AGG - chr8_2:15981427-15981446 Msa1236800:CDS 20.0%
!!! TTATGTTTTGTTTTTGTCTA+GGG - chr8_2:15981428-15981447 Msa1236800:CDS 20.0%
!!! ATATACTAGTAGTATGTTTT+TGG - chr8_2:15981555-15981574 Msa1236800:CDS 20.0%
!! CTTTAAACTACTTATTAGAT+TGG + chr8_2:15982774-15982793 None:intergenic 20.0%
! TCATTTGAAAGGTTAGAATT+TGG - chr8_2:15978197-15978216 Msa1236800:CDS 25.0%
! AGGACAATAATAAAAAAGTG+GGG + chr8_2:15978650-15978669 None:intergenic 25.0%
! AGTATAAGGAAGGAATTATA+AGG + chr8_2:15978693-15978712 None:intergenic 25.0%
!!! ACTTTTTCTTAGTATAAGGA+AGG + chr8_2:15978703-15978722 None:intergenic 25.0%
!!! CCAAACTTTTTCTTAGTATA+AGG + chr8_2:15978707-15978726 None:intergenic 25.0%
! CCTTATACTAAGAAAAAGTT+TGG - chr8_2:15978704-15978723 Msa1236800:CDS 25.0%
! GAAAGCAAAAATATATACCA+TGG - chr8_2:15979702-15979721 Msa1236800:intron 25.0%
!! TTAATGTATTGATGCTATGT+AGG + chr8_2:15979840-15979859 None:intergenic 25.0%
!! CTTGATATTGAAAGTTTGTT+TGG + chr8_2:15980262-15980281 None:intergenic 25.0%
! AAACTTTCAATATCAAGTGT+CGG - chr8_2:15980265-15980284 Msa1236800:CDS 25.0%
!!! TGTCTTAACTTTTTCACATA+AGG + chr8_2:15980876-15980895 None:intergenic 25.0%
! TTCAAATGTAAATCCTAAAG+AGG - chr8_2:15980956-15980975 Msa1236800:intron 25.0%
! AATTCAAAGTAAGCAATTTG+AGG + chr8_2:15981011-15981030 None:intergenic 25.0%
! TCTTAAGAAGAGGAAAAAAA+AGG + chr8_2:15981163-15981182 None:intergenic 25.0%
!! CTACTTTGTTATGTTACAAT+GGG - chr8_2:15981370-15981389 Msa1236800:CDS 25.0%
!!! ATGTTTTTGGAAAGATTGAA+TGG - chr8_2:15981568-15981587 Msa1236800:CDS 25.0%
! AATTATGGAGGAATTGATTA+GGG - chr8_2:15981651-15981670 Msa1236800:intron 25.0%
! TACATAACAAATGTTACACA+AGG - chr8_2:15981712-15981731 Msa1236800:intron 25.0%
!!! TTCATTTTTATTGTATGGGA+TGG - chr8_2:15981758-15981777 Msa1236800:intron 25.0%
!!! TCATTTTTATTGTATGGGAT+GGG - chr8_2:15981759-15981778 Msa1236800:intron 25.0%
! AATAAATGGAAGAGTCAATT+TGG - chr8_2:15981834-15981853 Msa1236800:intron 25.0%
!!! TGTGTTTTTATCTCTCTAAA+TGG - chr8_2:15981937-15981956 Msa1236800:intron 25.0%
! GGATACAAATTACCTAAATT+TGG + chr8_2:15982046-15982065 None:intergenic 25.0%
! GGTACATATTTAATGTGATT+AGG + chr8_2:15982092-15982111 None:intergenic 25.0%
! ATGTTAGTGACAATTAATCT+TGG - chr8_2:15982163-15982182 Msa1236800:intron 25.0%
! GAATGATTTACAATTATCAG+TGG - chr8_2:15982321-15982340 Msa1236800:intron 25.0%
! AAGATTCTTGAACATTATGT+TGG - chr8_2:15982595-15982614 Msa1236800:intron 25.0%
! AACATATATGTGACAAAATC+TGG + chr8_2:15982839-15982858 None:intergenic 25.0%
! AAAATATAAAAATGGGGTCA+AGG - chr8_2:15982876-15982895 Msa1236800:CDS 25.0%
TATCTTAGATACCTCATTGA+AGG - chr8_2:15978425-15978444 Msa1236800:CDS 30.0%
TAAATAAGAGACCTTCAATG+AGG + chr8_2:15978439-15978458 None:intergenic 30.0%
TTTGCACTATTTGCTTCTAT+TGG - chr8_2:15978478-15978497 Msa1236800:CDS 30.0%
!! TATTTGCTTCTATTGGTTCT+AGG - chr8_2:15978485-15978504 Msa1236800:CDS 30.0%
!! AAATTCTCATCTTGGTTTTC+TGG + chr8_2:15978551-15978570 None:intergenic 30.0%
CATCATGAAAATTCTCATCT+TGG + chr8_2:15978559-15978578 None:intergenic 30.0%
! TTTGCAAAGAACCATACTTT+TGG - chr8_2:15978586-15978605 Msa1236800:CDS 30.0%
! TTGTCCTTTTTACCCTTAAA+AGG - chr8_2:15978663-15978682 Msa1236800:CDS 30.0%
! TGTCCTTTTTACCCTTAAAA+GGG - chr8_2:15978664-15978683 Msa1236800:CDS 30.0%
! TTATAAGGTAGCCCTTTTAA+GGG + chr8_2:15978678-15978697 None:intergenic 30.0%
! ATTATAAGGTAGCCCTTTTA+AGG + chr8_2:15978679-15978698 None:intergenic 30.0%
CATTAGAAAGAACAAAGCAA+AGG + chr8_2:15978833-15978852 None:intergenic 30.0%
! CTTTGCTTTGTTCTTTCTAA+TGG - chr8_2:15978831-15978850 Msa1236800:intron 30.0%
! ATTTTCAAAATCCATTCTGC+TGG - chr8_2:15978913-15978932 Msa1236800:intron 30.0%
! TTTTCAAAATCCATTCTGCT+GGG - chr8_2:15978914-15978933 Msa1236800:intron 30.0%
TATGTAGTCAAATCAATGAG+TGG + chr8_2:15979208-15979227 None:intergenic 30.0%
AAGTGATAGAAGAATTTGAG+AGG - chr8_2:15979317-15979336 Msa1236800:intron 30.0%
AAATCTTTGTAAGTGACCAA+TGG + chr8_2:15979475-15979494 None:intergenic 30.0%
ATTGGTCACTTACAAAGATT+TGG - chr8_2:15979474-15979493 Msa1236800:intron 30.0%
!!! AAGAGTGTTTTCATACCTTA+AGG + chr8_2:15979572-15979591 None:intergenic 30.0%
!!! CAACTTTTTCACATTCAACT+GGG + chr8_2:15979611-15979630 None:intergenic 30.0%
!!! TCAACTTTTTCACATTCAAC+TGG + chr8_2:15979612-15979631 None:intergenic 30.0%
!! AACTTGTGTTTTTGTAGTTC+TGG - chr8_2:15979668-15979687 Msa1236800:intron 30.0%
TCAAACAATTCATCATTCCA+TGG + chr8_2:15979722-15979741 None:intergenic 30.0%
ATAGTAATACCTGTTCCTAA+AGG + chr8_2:15979777-15979796 None:intergenic 30.0%
TAAATTGAAGTCACCTTTGA+CGG - chr8_2:15979857-15979876 Msa1236800:CDS 30.0%
!! ATGAAGCATTGACACTTAAA+TGG + chr8_2:15980175-15980194 None:intergenic 30.0%
TAGAGTGATTGGTGAAAATT+AGG + chr8_2:15980531-15980550 None:intergenic 30.0%
CTTATTACTGACATCAAAGA+AGG - chr8_2:15980663-15980682 Msa1236800:intron 30.0%
!! TTTTGACATAGCAGTTCTAA+TGG + chr8_2:15980718-15980737 None:intergenic 30.0%
TTGACATTAGGAAAAAGTTC+TGG + chr8_2:15980819-15980838 None:intergenic 30.0%
CTAATGTCAAGTATGTTCAA+GGG - chr8_2:15980829-15980848 Msa1236800:intron 30.0%
AAAAAGTTAAGACACTATGC+AGG - chr8_2:15980882-15980901 Msa1236800:intron 30.0%
!!! ATAAATATTTTGGTACCTGC+AGG + chr8_2:15981134-15981153 None:intergenic 30.0%
!!! ATGATGGGTTTTCATACTTT+AGG - chr8_2:15981197-15981216 Msa1236800:CDS 30.0%
!!! TGACGGATTTTCATATACTT+TGG - chr8_2:15981279-15981298 Msa1236800:intron 30.0%
! GCTACTTTGTTATGTTACAA+TGG - chr8_2:15981369-15981388 Msa1236800:CDS 30.0%
! AGAGTGGTTATTGTGAATTT+TGG - chr8_2:15981459-15981478 Msa1236800:CDS 30.0%
ATTAGTATGTTGTAAGTGAG+TGG - chr8_2:15981626-15981645 Msa1236800:CDS 30.0%
CAATTATGGAGGAATTGATT+AGG - chr8_2:15981650-15981669 Msa1236800:intron 30.0%
! GATAAAGCTTTTAGCACAAA+TGG - chr8_2:15981686-15981705 Msa1236800:intron 30.0%
GAGAGATAGACACAAAAAAT+AGG - chr8_2:15981858-15981877 Msa1236800:intron 30.0%
AGATAGACACAAAAAATAGG+TGG - chr8_2:15981861-15981880 Msa1236800:intron 30.0%
! GTTTTTATCTCTCTAAATGG+AGG - chr8_2:15981940-15981959 Msa1236800:intron 30.0%
GAAATGGAGAGGAAAATAAA+TGG - chr8_2:15981962-15981981 Msa1236800:intron 30.0%
! GTAATTTGTATCCCTACATA+AGG - chr8_2:15982053-15982072 Msa1236800:intron 30.0%
TGTACTATGTTCCTTATGTA+GGG + chr8_2:15982067-15982086 None:intergenic 30.0%
ATGTACTATGTTCCTTATGT+AGG + chr8_2:15982068-15982087 None:intergenic 30.0%
ATTAATCTTGGATAATGTGC+AGG - chr8_2:15982175-15982194 Msa1236800:intron 30.0%
!!! TGATTTTTGGAGTTGAGTTA+TGG + chr8_2:15982246-15982265 None:intergenic 30.0%
! CTACGAAGAAACTTGATTTT+TGG + chr8_2:15982259-15982278 None:intergenic 30.0%
CAAAAATCAAGTTTCTTCGT+AGG - chr8_2:15982257-15982276 Msa1236800:intron 30.0%
! ATTGATTTATCCAAAGAACC+AGG - chr8_2:15982403-15982422 Msa1236800:intron 30.0%
! AGGACACTATGTTATCTTTT+GGG - chr8_2:15982423-15982442 Msa1236800:intron 30.0%
!! GTTAGTTCTAGAAAAGTCAA+AGG - chr8_2:15982526-15982545 Msa1236800:intron 30.0%
!! TAGAAAAGTCAAAGGTATTG+CGG - chr8_2:15982534-15982553 Msa1236800:intron 30.0%
CATAATGTTCAAGAATCTTC+TGG + chr8_2:15982594-15982613 None:intergenic 30.0%
CTTGAACATTATGTTGGATT+AGG - chr8_2:15982601-15982620 Msa1236800:intron 30.0%
CAACAATATTTGCAACACTT+TGG + chr8_2:15982677-15982696 None:intergenic 30.0%
!! CAAAGTGTTGCAAATATTGT+TGG - chr8_2:15982675-15982694 Msa1236800:intron 30.0%
TTGTCACATATATGTTTGTG+AGG - chr8_2:15982843-15982862 Msa1236800:intron 30.0%
!!! TTGGTTTAGCTTTTGAGCAT+AGG + chr8_2:15978003-15978022 None:intergenic 35.0%
! GTGATTTTACAGCAATCTCT+TGG + chr8_2:15978022-15978041 None:intergenic 35.0%
CTGTAAAATCACATGAACAG+CGG - chr8_2:15978030-15978049 Msa1236800:three_prime_UTR 35.0%
!!! TGCTGTTTTTGCTCTTCTAA+TGG - chr8_2:15978087-15978106 Msa1236800:three_prime_UTR 35.0%
AAGAAATAACAAGTGACACG+TGG - chr8_2:15978137-15978156 Msa1236800:three_prime_UTR 35.0%
TCTAACCTTTCAAATGACAC+AGG + chr8_2:15978194-15978213 None:intergenic 35.0%
ACAGAAAGATAGGAGGATAA+AGG + chr8_2:15978225-15978244 None:intergenic 35.0%
TGTCAAAACAGAAAGATAGG+AGG + chr8_2:15978232-15978251 None:intergenic 35.0%
GACTGTCAAAACAGAAAGAT+AGG + chr8_2:15978235-15978254 None:intergenic 35.0%
TTTGTGTGTCACATGAATGT+GGG + chr8_2:15978274-15978293 None:intergenic 35.0%
ATTTGTGTGTCACATGAATG+TGG + chr8_2:15978275-15978294 None:intergenic 35.0%
!!! ATCTTGGTTTTCTGGTTTCT+TGG + chr8_2:15978543-15978562 None:intergenic 35.0%
! AAGAACCATACTTTTGGCAA+AGG - chr8_2:15978592-15978611 Msa1236800:CDS 35.0%
! AGAACCATACTTTTGGCAAA+GGG - chr8_2:15978593-15978612 Msa1236800:CDS 35.0%
!! TAGCCCTTTTAAGGGTAAAA+AGG + chr8_2:15978670-15978689 None:intergenic 35.0%
GTGATAGAAAACAACAGAGT+TGG + chr8_2:15978787-15978806 None:intergenic 35.0%
!!! TTCTGTCTTTGTTTTCCAAC+TGG + chr8_2:15978941-15978960 None:intergenic 35.0%
TCTCCAACTTCAATAGTCTT+TGG - chr8_2:15979105-15979124 Msa1236800:intron 35.0%
AAGCCAAAGACTATTGAAGT+TGG + chr8_2:15979111-15979130 None:intergenic 35.0%
!!! TGAGTGGCATTTTTTCAGTT+TGG + chr8_2:15979192-15979211 None:intergenic 35.0%
AGAATTTGAGAGGCTAACAA+AGG - chr8_2:15979327-15979346 Msa1236800:intron 35.0%
! GGAAACACTGAAGAAGATTT+TGG - chr8_2:15979369-15979388 Msa1236800:intron 35.0%
! GATTTTTCTCCTATTCTCAC+TGG - chr8_2:15979526-15979545 Msa1236800:intron 35.0%
!!! ATTGGTTTTCCAGTGAGAAT+AGG + chr8_2:15979538-15979557 None:intergenic 35.0%
! ATCAAACCTCTTTTGCCTTT+AGG - chr8_2:15979759-15979778 Msa1236800:intron 35.0%
TGAATGTAACATTGTGAGTG+TGG + chr8_2:15979909-15979928 None:intergenic 35.0%
ACGCGTCAATAATGTTTCAT+AGG + chr8_2:15980210-15980229 None:intergenic 35.0%
ATAGGAAACTCTCTGCATAA+TGG + chr8_2:15980339-15980358 None:intergenic 35.0%
AGAGAGTTTCCTATCCAAAA+TGG - chr8_2:15980345-15980364 Msa1236800:CDS 35.0%
AGCAAACTATCACAAGCTAA+AGG - chr8_2:15980393-15980412 Msa1236800:CDS 35.0%
GCAAACTATCACAAGCTAAA+GGG - chr8_2:15980394-15980413 Msa1236800:CDS 35.0%
CAAACTATCACAAGCTAAAG+GGG - chr8_2:15980395-15980414 Msa1236800:CDS 35.0%
AAACTATCACAAGCTAAAGG+GGG - chr8_2:15980396-15980415 Msa1236800:CDS 35.0%
! ATTTCTGAATACATTGGCTG+TGG + chr8_2:15980439-15980458 None:intergenic 35.0%
TCCTGGATTTCTGAATACAT+TGG + chr8_2:15980445-15980464 None:intergenic 35.0%
GACTGAATATCACATCATGA+GGG + chr8_2:15980509-15980528 None:intergenic 35.0%
TCAGAACCTTTGAACAAGTT+TGG - chr8_2:15980634-15980653 Msa1236800:intron 35.0%
CAGAACCTTTGAACAAGTTT+GGG - chr8_2:15980635-15980654 Msa1236800:intron 35.0%
! TTCTTCCCAAACTTGTTCAA+AGG + chr8_2:15980643-15980662 None:intergenic 35.0%
AAGTTAGCTAGTTCAGGATT+TGG + chr8_2:15980750-15980769 None:intergenic 35.0%
TTGATCCACAAGAAATGCAT+AGG - chr8_2:15980768-15980787 Msa1236800:intron 35.0%
TCAATCCTATGCATTTCTTG+TGG + chr8_2:15980776-15980795 None:intergenic 35.0%
AATGCATAGGATTGAGCAAT+TGG - chr8_2:15980781-15980800 Msa1236800:intron 35.0%
ATAGGATTGAGCAATTGGTA+TGG - chr8_2:15980786-15980805 Msa1236800:intron 35.0%
CCTTGAACATACTTGACATT+AGG + chr8_2:15980831-15980850 None:intergenic 35.0%
CCTAATGTCAAGTATGTTCA+AGG - chr8_2:15980828-15980847 Msa1236800:intron 35.0%
ACAACATAAGTAGCTAACTC+AGG + chr8_2:15980984-15981003 None:intergenic 35.0%
ATTCCTTTGACACAACTTGA+TGG - chr8_2:15981032-15981051 Msa1236800:intron 35.0%
TTCACATCAGTTAATCCAAC+TGG + chr8_2:15981077-15981096 None:intergenic 35.0%
GGATTAACTGATGTGAAGAT+TGG - chr8_2:15981080-15981099 Msa1236800:intron 35.0%
GAAGATTGGTGAAGATTATG+AGG - chr8_2:15981094-15981113 Msa1236800:intron 35.0%
TTTCCTCTTCTTAAGATGTC+AGG - chr8_2:15981167-15981186 Msa1236800:CDS 35.0%
TTCCTCTTCTTAAGATGTCA+GGG - chr8_2:15981168-15981187 Msa1236800:CDS 35.0%
ATGTCAGGGACTAATATGAT+GGG - chr8_2:15981182-15981201 Msa1236800:CDS 35.0%
GTAACATAACAAAGTAGCAG+TGG + chr8_2:15981367-15981386 None:intergenic 35.0%
!!! TTGTTTTTGTCTAGGGTGTA+AGG - chr8_2:15981435-15981454 Msa1236800:CDS 35.0%
TGGAAAGATTGAATGGTTAC+TGG - chr8_2:15981575-15981594 Msa1236800:CDS 35.0%
TGTAAGTGAGTGGACAATTA+TGG - chr8_2:15981636-15981655 Msa1236800:CDS 35.0%
TTTATTGTATGGGATGGGAT+TGG - chr8_2:15981764-15981783 Msa1236800:intron 35.0%
TTATTGTATGGGATGGGATT+GGG - chr8_2:15981765-15981784 Msa1236800:intron 35.0%
! AGAGAAGAAGTGGTTACTTT+GGG - chr8_2:15981788-15981807 Msa1236800:intron 35.0%
GGTGAGACTTACTTAATGAT+AGG + chr8_2:15981892-15981911 None:intergenic 35.0%
ATCTCTCTAAATGGAGGAAA+TGG - chr8_2:15981946-15981965 Msa1236800:intron 35.0%
!! GTTACTTTGCCTTTTATGCT+TGG - chr8_2:15982001-15982020 Msa1236800:intron 35.0%
ACCTTTATGGGACCAAATTT+AGG - chr8_2:15982031-15982050 Msa1236800:intron 35.0%
ACCTAAATTTGGTCCCATAA+AGG + chr8_2:15982035-15982054 None:intergenic 35.0%
GCTTATACAGATATAGGCTA+GGG - chr8_2:15982197-15982216 Msa1236800:intron 35.0%
CTTATACAGATATAGGCTAG+GGG - chr8_2:15982198-15982217 Msa1236800:intron 35.0%
TGTGTTCTTGTCAATGTTGA+TGG + chr8_2:15982299-15982318 None:intergenic 35.0%
TTTCTCTTCAGCTAACAACA+TGG + chr8_2:15982356-15982375 None:intergenic 35.0%
GTTGTTAGCTGAAGAGAAAA+TGG - chr8_2:15982357-15982376 Msa1236800:intron 35.0%
CAAAAGATAACATAGTGTCC+TGG + chr8_2:15982424-15982443 None:intergenic 35.0%
! CAGGACACTATGTTATCTTT+TGG - chr8_2:15982422-15982441 Msa1236800:intron 35.0%
!! GTTATCTTTTGGGAAATCAG+TGG - chr8_2:15982433-15982452 Msa1236800:intron 35.0%
TGATGAATGTTGCACATGTT+TGG - chr8_2:15982477-15982496 Msa1236800:intron 35.0%
CAGGCCTTGGATTAATCTAA+CGG - chr8_2:15978168-15978187 Msa1236800:exon 40.0%
! GAACCATACTTTTGGCAAAG+GGG - chr8_2:15978594-15978613 Msa1236800:CDS 40.0%
! CTAATGGTTCAGAGTATCTG+TGG - chr8_2:15978847-15978866 Msa1236800:intron 40.0%
!! ATATGGTGTTATGACCCATG+AGG + chr8_2:15978969-15978988 None:intergenic 40.0%
!! TTCTTGTTGATAACAGCTGC+AGG - chr8_2:15979244-15979263 Msa1236800:intron 40.0%
TGAAGGAGTTGTGAAGATGA+AGG - chr8_2:15979267-15979286 Msa1236800:intron 40.0%
GCTGAATACTTGCAGAGTTT+AGG - chr8_2:15979406-15979425 Msa1236800:intron 40.0%
! TTGCAGAGTTTAGGACTCAA+TGG - chr8_2:15979415-15979434 Msa1236800:intron 40.0%
AACTGATCCTGAAAGCTTCA+AGG - chr8_2:15979441-15979460 Msa1236800:intron 40.0%
CTTAAGGAGATAGCAGTGAT+TGG + chr8_2:15979556-15979575 None:intergenic 40.0%
CAATCACTGCTATCTCCTTA+AGG - chr8_2:15979554-15979573 Msa1236800:intron 40.0%
!! TGTAGTTCTGGTACTAGTCA+AGG - chr8_2:15979680-15979699 Msa1236800:intron 40.0%
GGTTTGATATATCTGCACTG+TGG + chr8_2:15979747-15979766 None:intergenic 40.0%
TGGCAAACATTGACACATGT+CGG + chr8_2:15979886-15979905 None:intergenic 40.0%
ATGTAACATTGTGAGTGTGG+TGG + chr8_2:15979906-15979925 None:intergenic 40.0%
TTTAGCTGCCTATGAAGCAT+TGG - chr8_2:15979983-15980002 Msa1236800:CDS 40.0%
TTGTTGACGTGTCAGTGTTT+GGG + chr8_2:15980009-15980028 None:intergenic 40.0%
TGTTCAATGTCTGCATGACA+CGG + chr8_2:15980080-15980099 None:intergenic 40.0%
GTTTCCTATCCAAAATGGCA+AGG - chr8_2:15980350-15980369 Msa1236800:CDS 40.0%
GCCAATGTATTCAGAAATCC+AGG - chr8_2:15980441-15980460 Msa1236800:CDS 40.0%
TTCATTGCATGCTTGTATCC+TGG + chr8_2:15980462-15980481 None:intergenic 40.0%
!! ATGAAAGCACTTCAATCTCC+TGG - chr8_2:15980477-15980496 Msa1236800:CDS 40.0%
GGACTGAATATCACATCATG+AGG + chr8_2:15980510-15980529 None:intergenic 40.0%
! GACATAGCAGTTCTAATGGA+TGG + chr8_2:15980714-15980733 None:intergenic 40.0%
TGGATCAAGTTAGCTAGTTC+AGG + chr8_2:15980756-15980775 None:intergenic 40.0%
TATGTTCAAGGGATCATGAC+TGG - chr8_2:15980840-15980859 Msa1236800:intron 40.0%
CCATACTCAGAAGTCAACAA+AGG + chr8_2:15980915-15980934 None:intergenic 40.0%
!! CCTTTGTTGACTTCTGAGTA+TGG - chr8_2:15980912-15980931 Msa1236800:intron 40.0%
TCTGAGTATGGTTCTTCTGA+AGG - chr8_2:15980924-15980943 Msa1236800:intron 40.0%
! AGTATGGTTCTTCTGAAGGT+TGG - chr8_2:15980928-15980947 Msa1236800:intron 40.0%
! GTTCCATCAAGTTGTGTCAA+AGG + chr8_2:15981038-15981057 None:intergenic 40.0%
GACACAACTTGATGGAACTA+AGG - chr8_2:15981040-15981059 Msa1236800:intron 40.0%
ACAACTTGATGGAACTAAGG+TGG - chr8_2:15981043-15981062 Msa1236800:intron 40.0%
!!! TATTTTGGTACCTGCAGGAT+TGG + chr8_2:15981129-15981148 None:intergenic 40.0%
GATGTCAGGGACTAATATGA+TGG - chr8_2:15981181-15981200 Msa1236800:CDS 40.0%
CATAACAAAGTAGCAGTGGT+TGG + chr8_2:15981363-15981382 None:intergenic 40.0%
AAGTGAGTGGACAATTATGG+AGG - chr8_2:15981639-15981658 Msa1236800:CDS 40.0%
GAGAGAAGAAGTGGTTACTT+TGG - chr8_2:15981787-15981806 Msa1236800:intron 40.0%
TCTAAATGGAGGAAATGGAG+AGG - chr8_2:15981951-15981970 Msa1236800:intron 40.0%
GGAGAGGAAAATAAATGGAG+AGG - chr8_2:15981967-15981986 Msa1236800:intron 40.0%
AAATGGAGAGGATCTTGACT+CGG - chr8_2:15981979-15981998 Msa1236800:intron 40.0%
GTCATGTCACCAAGCATAAA+AGG + chr8_2:15982013-15982032 None:intergenic 40.0%
! CTTGGTGACATGACCTTTAT+GGG - chr8_2:15982019-15982038 Msa1236800:intron 40.0%
GTGCAGGCTTATACAGATAT+AGG - chr8_2:15982191-15982210 Msa1236800:intron 40.0%
GGCTTATACAGATATAGGCT+AGG - chr8_2:15982196-15982215 Msa1236800:intron 40.0%
!! CAATGTTGATGGTGAGCATA+AGG + chr8_2:15982288-15982307 None:intergenic 40.0%
! AACATAGTGTCCTGGTTCTT+TGG + chr8_2:15982416-15982435 None:intergenic 40.0%
! GACAAGTCTTTTGTTGATGC+TGG - chr8_2:15982499-15982518 Msa1236800:intron 40.0%
ATGTTCCTTTCCGAACAAGT+CGG + chr8_2:15982570-15982589 None:intergenic 40.0%
!! TGCAACACTTTGGTGTTTGT+AGG + chr8_2:15982667-15982686 None:intergenic 40.0%
TAGGCTGCCATGAAATTCAG+CGG + chr8_2:15977984-15978003 None:intergenic 45.0%
AAATCACATGAACAGCGGCA+TGG - chr8_2:15978035-15978054 Msa1236800:three_prime_UTR 45.0%
CAGGCCGTTAGATTAATCCA+AGG + chr8_2:15978175-15978194 None:intergenic 45.0%
!! AACGGCCTGTGTCATTTGAA+AGG - chr8_2:15978186-15978205 Msa1236800:CDS 45.0%
ACACCCCTTTGCCAAAAGTA+TGG + chr8_2:15978600-15978619 None:intergenic 45.0%
AAAGACAGAACTGCACCTCA+TGG - chr8_2:15978951-15978970 Msa1236800:intron 45.0%
AAGACAGAACTGCACCTCAT+GGG - chr8_2:15978952-15978971 Msa1236800:intron 45.0%
! TTGATAACAGCTGCAGGTGA+AGG - chr8_2:15979250-15979269 Msa1236800:intron 45.0%
AGAGGCTAACAAAGGATGCT+GGG - chr8_2:15979335-15979354 Msa1236800:intron 45.0%
GGATGCTGGGAATGTTCAAA+AGG - chr8_2:15979348-15979367 Msa1236800:intron 45.0%
ACACATGCCTTGAAGCTTTC+AGG + chr8_2:15979451-15979470 None:intergenic 45.0%
CTTCAAGGCATGTGTTCCAT+TGG - chr8_2:15979456-15979475 Msa1236800:intron 45.0%
CCTGTTCCTAAAGGCAAAAG+AGG + chr8_2:15979768-15979787 None:intergenic 45.0%
!! CCTCTTTTGCCTTTAGGAAC+AGG - chr8_2:15979765-15979784 Msa1236800:intron 45.0%
TGTTTGGGCCAATGCTTCAT+AGG + chr8_2:15979994-15980013 None:intergenic 45.0%
GTTGTTGACGTGTCAGTGTT+TGG + chr8_2:15980010-15980029 None:intergenic 45.0%
GAACACACATGTTAGACACC+TGG - chr8_2:15980095-15980114 Msa1236800:CDS 45.0%
TGTTCGACATCGACATGCTT+TGG + chr8_2:15980239-15980258 None:intergenic 45.0%
!!! AAGGCCTTGCCATTTTGGAT+AGG + chr8_2:15980357-15980376 None:intergenic 45.0%
!! AGCTTAAGGCCTTGCCATTT+TGG + chr8_2:15980362-15980381 None:intergenic 45.0%
GCTGCTGTAGATGAAGCTTA+AGG + chr8_2:15980376-15980395 None:intergenic 45.0%
AAAGCAGTCCACATAAGAGG+TGG + chr8_2:15980557-15980576 None:intergenic 45.0%
TGCAAAGCAGTCCACATAAG+AGG + chr8_2:15980560-15980579 None:intergenic 45.0%
GTTAAGACACTATGCAGGAG+AGG - chr8_2:15980887-15980906 Msa1236800:intron 45.0%
!! GTTGTTTTCACCAATCCTGC+AGG - chr8_2:15981116-15981135 Msa1236800:intron 45.0%
GTCCCTGACATCTTAAGAAG+AGG + chr8_2:15981173-15981192 None:intergenic 45.0%
AACAAAGTAGCAGTGGTTGG+TGG + chr8_2:15981360-15981379 None:intergenic 45.0%
! GCTTGGTGACATGACCTTTA+TGG - chr8_2:15982018-15982037 Msa1236800:intron 45.0%
AGGGGATGTGGTAAAGGTTA+TGG - chr8_2:15982216-15982235 Msa1236800:intron 45.0%
GGGGATGTGGTAAAGGTTAT+GGG - chr8_2:15982217-15982236 Msa1236800:intron 45.0%
TGAGTCAGTTCAAGACACCT+AGG - chr8_2:15982632-15982651 Msa1236800:intron 45.0%
TTTGTAGGAGCAACACACCT+AGG + chr8_2:15982652-15982671 None:intergenic 45.0%
!! GTAAAATATTTATATATATA+AGG + chr8_2:15982804-15982823 None:intergenic 5.0%
!! TTCTATAAAAAATATAAAAA+TGG - chr8_2:15982868-15982887 Msa1236800:CDS 5.0%
!! TCTATAAAAAATATAAAAAT+GGG - chr8_2:15982869-15982888 Msa1236800:CDS 5.0%
GTGACACGTGGCATGATAAC+AGG - chr8_2:15978149-15978168 Msa1236800:three_prime_UTR 50.0%
GAGAGGCTAACAAAGGATGC+TGG - chr8_2:15979334-15979353 Msa1236800:intron 50.0%
TGTTAGACACCTGGCACATG+TGG - chr8_2:15980104-15980123 Msa1236800:CDS 50.0%
CGAATGTTACCACATGTGCC+AGG + chr8_2:15980116-15980135 None:intergenic 50.0%
AGAGGTGGCAGTAGAGTGAT+TGG + chr8_2:15980542-15980561 None:intergenic 50.0%
CTCTACTGCCACCTCTTATG+TGG - chr8_2:15980546-15980565 Msa1236800:CDS 50.0%
AGGGATCATGACTGGTGCAA+TGG - chr8_2:15980848-15980867 Msa1236800:intron 50.0%
GCTAACTCAGGAGCCTCTTT+AGG + chr8_2:15980972-15980991 None:intergenic 50.0%
! GTCTAGGGTGTAAGGTAGAG+TGG - chr8_2:15981443-15981462 Msa1236800:CDS 50.0%
TGGGATTGGGAGAGAAGAAG+TGG - chr8_2:15981778-15981797 Msa1236800:intron 50.0%
CAGATATAGGCTAGGGGATG+TGG - chr8_2:15982204-15982223 Msa1236800:intron 50.0%
TAGGCTAGGGGATGTGGTAA+AGG - chr8_2:15982210-15982229 Msa1236800:intron 50.0%
CCGAACAAGTCGGAGTTCAA+GGG + chr8_2:15982560-15982579 None:intergenic 50.0%
! CCCTTGAACTCCGACTTGTT+CGG - chr8_2:15982557-15982576 Msa1236800:intron 50.0%
TCCGAACAAGTCGGAGTTCA+AGG + chr8_2:15982561-15982580 None:intergenic 50.0%
! GAACTCCGACTTGTTCGGAA+AGG - chr8_2:15982562-15982581 Msa1236800:intron 50.0%
ATGGCAACGACGGTGGTGAA+CGG - chr8_2:15978054-15978073 Msa1236800:three_prime_UTR 55.0%
CGTGGCATGATAACAGGCCT+TGG - chr8_2:15978155-15978174 Msa1236800:three_prime_UTR 55.0%
TCCATTCTGCTGGGTCCAGT+TGG - chr8_2:15978923-15978942 Msa1236800:intron 55.0%
TCCAACTGGACCCAGCAGAA+TGG + chr8_2:15978927-15978946 None:intergenic 55.0%
CACATGTCGGACACCGTCAA+AGG + chr8_2:15979873-15979892 None:intergenic 55.0%
CTGCATGACACGGACACATG+TGG + chr8_2:15980070-15980089 None:intergenic 55.0%
ACATCATGAGGGCTGCATCC+AGG + chr8_2:15980498-15980517 None:intergenic 55.0%
AAGGTGGAGCTTGAGCCAGT+TGG - chr8_2:15981059-15981078 Msa1236800:intron 55.0%
GAACAGCGGCATGGCAACGA+CGG - chr8_2:15978044-15978063 Msa1236800:three_prime_UTR 60.0%
TGGCAACGACGGTGGTGAAC+GGG - chr8_2:15978055-15978074 Msa1236800:three_prime_UTR 60.0%
CAACGACGGTGGTGAACGGG+TGG - chr8_2:15978058-15978077 Msa1236800:three_prime_UTR 65.0%
CAGCGGCATGGCAACGACGG+TGG - chr8_2:15978047-15978066 Msa1236800:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 15977978 15982942 15977978 ID=Msa1236800;Name=Msa1236800
chr8_2 mRNA 15977978 15982942 15977978 ID=Msa1236800-mRNA-1;Parent=Msa1236800;Name=Msa1236800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.75|0.8|0.8|1|1|5|204|613
chr8_2 exon 15977978 15978723 15977978 ID=Msa1236800-mRNA-1:exon:5960;Parent=Msa1236800-mRNA-1
chr8_2 exon 15979783 15980573 15979783 ID=Msa1236800-mRNA-1:exon:5959;Parent=Msa1236800-mRNA-1
chr8_2 exon 15981134 15981235 15981134 ID=Msa1236800-mRNA-1:exon:5958;Parent=Msa1236800-mRNA-1
chr8_2 exon 15981345 15981660 15981345 ID=Msa1236800-mRNA-1:exon:5957;Parent=Msa1236800-mRNA-1
chr8_2 exon 15982852 15982942 15982852 ID=Msa1236800-mRNA-1:exon:5956;Parent=Msa1236800-mRNA-1
chr8_2 CDS 15982852 15982942 15982852 ID=Msa1236800-mRNA-1:cds;Parent=Msa1236800-mRNA-1
chr8_2 CDS 15981345 15981660 15981345 ID=Msa1236800-mRNA-1:cds;Parent=Msa1236800-mRNA-1
chr8_2 CDS 15981134 15981235 15981134 ID=Msa1236800-mRNA-1:cds;Parent=Msa1236800-mRNA-1
chr8_2 CDS 15979783 15980573 15979783 ID=Msa1236800-mRNA-1:cds;Parent=Msa1236800-mRNA-1
chr8_2 CDS 15978182 15978723 15978182 ID=Msa1236800-mRNA-1:cds;Parent=Msa1236800-mRNA-1
chr8_2 three_prime_UTR 15977978 15978181 15977978 ID=Msa1236800-mRNA-1:three_prime_utr;Parent=Msa1236800-mRNA-1
Gene Sequence

>Msa1236800

ATGCCGCTGAATTTCATGGCAGCCTATGCTCAAAAGCTAAACCAAGAGATTGCTGTAAAATCACATGAACAGCGGCATGGCAACGACGGTGCTGCAGGTGAAGGAGTTGTGAAGATGAAGGAAATAATTGAGAAATTTGACATGGAAAAAGTGATAGAAGAATTTGAGAGGCTAACAAAGGATGCTGGGAATGTTCAAAAGGAAACACTGAAGAAGATTTTGGAAGTAAATGCATCAGCTGAATACTTGCAGAGTTTAGGACTCAATGGAAGAACTGATCCTGAAAGCTTCAAGGCATGTGTTCCATTGGTCACTTACAAAGATTTGGAGCCTTATATCAATAGAATAGTTGATGGTGATTTTTCTCCTATTCTCACTGGAAAACCAATCACTGCTATCTCCTTAAGTTCTGGTACTAGTCAAGGAAAGCAAAAATATATACCATGGAATGATGAATTGTTTGAAACCACAGTGCAGATATATCAAACCTCTTTTGCCTTTAGGAACAGAGAGTTTCCTATCCAAAATGGCAAGGCCTTAAGCTTCATCTACAGCAGCAAACTATCACAAGCTAAAGGGGGTGTGACAGTAGCAACAGCCACAGCCAATGTATTCAGAAATCCAGGATACAAGCATGCAATGAAAGCACTTCAATCTCCTGGATGCAGCCCTCATGATGTGATATTCAGTCCTAATTTTCACCAATCACTCTACTGCCACCTCTTATGTGGACTGCTTTGCAGAGAAGAAATTCAATTAATTTCATCAACATTTGCACATAGCATTGTCTATGCTTTCAGAACCTTTGAACAAGTTTGGGAAGAACTTATTACTGACATCAAAGAAGGTGTTCTTAGCAGTAGAATCACATATCCATCCATTAGAACTGCTATGTCAAAACTTCTGAAACCAAATCCTGAACTAGCTAACTTGATCCACAAGAAATGCATAGGATTGAGCAATTGGTATGGATTGATACCAGAACTTTTTCCTAATGTCAAGTATGTTCAAGGGATCATGACTGGTGCAATGGAACCTTATGTGAAAAAGTTAAGACACTATGCAGGAGAGGTTCCTTTGTTGACTTCTGAGTATGGTTCTTCTGAAGGTTGGATTGCTTCAAATGTAAATCCTAAAGAGGCTCCTGAGTTAGCTACTTATGTTGTTCTTCCTCAAATTGCTTACTTTGAATTCATTCCTTTGACACAACTTGATGGAACTAAGGTGGAGCTTGAGCCAGTTGGATTAACTGATGTGAAGATTGGTGAAGATTATGAGGTTGTTTTCACCAATCCTGCAGGCTTATACAGATATAGGCTAGGGGATGTGGTAAAGGTTATGGGATTCCATAACTCAACTCCAAAAATCAAGTTTCTTCGTAGGAGCAACCTTATGCTCACCATCAACATTGACAAGAACACAGAGAATGATTTACAATTATCAGTGGAAACAGCATCCATGTTGTTAGCTGAAGAGAAAATGGAAGTGATTGACTACACAAGCTACATTGATTTATCCAAAGAACCAGGACACTATGTTATCTTTTGGGAAATCAGTGGTGAAGCAAGTGATGAAGTGCTTGATGAATGTTGCACATGTTTGGACAAGTCTTTTGTTGATGCTGGCTATGTTAGTTCTAGAAAAGTCAAAGGTATTGCGGCCCTTGAACTCCGACTTGTTCGGAAAGGAACATTCCAGAAGATTCTTGAACATTATGTTGGATTAGGTGTTGCTGTGAGTCAGTTCAAGACACCTAGGTGTGTTGCTCCTACAAACACCAAAGTGTTGCAAATATTGTTGGAGAATGTTGTCAAGAACTATTTTAGTTCTGCTTACAATTGA

Protein sequence

>Msa1236800

MPLNFMAAYAQKLNQEIAVKSHEQRHGNDGAAGEGVVKMKEIIEKFDMEKVIEEFERLTKDAGNVQKETLKKILEVNASAEYLQSLGLNGRTDPESFKACVPLVTYKDLEPYINRIVDGDFSPILTGKPITAISLSSGTSQGKQKYIPWNDELFETTVQIYQTSFAFRNREFPIQNGKALSFIYSSKLSQAKGGVTVATATANVFRNPGYKHAMKALQSPGCSPHDVIFSPNFHQSLYCHLLCGLLCREEIQLISSTFAHSIVYAFRTFEQVWEELITDIKEGVLSSRITYPSIRTAMSKLLKPNPELANLIHKKCIGLSNWYGLIPELFPNVKYVQGIMTGAMEPYVKKLRHYAGEVPLLTSEYGSSEGWIASNVNPKEAPELATYVVLPQIAYFEFIPLTQLDGTKVELEPVGLTDVKIGEDYEVVFTNPAGLYRYRLGDVVKVMGFHNSTPKIKFLRRSNLMLTINIDKNTENDLQLSVETASMLLAEEKMEVIDYTSYIDLSKEPGHYVIFWEISGEASDEVLDECCTCLDKSFVDAGYVSSRKVKGIAALELRLVRKGTFQKILEHYVGLGVAVSQFKTPRCVAPTNTKVLQILLENVVKNYFSSAYN*