Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1236800 | KEH18698.1 | 97.565 | 575 | 14 | 0 | 39 | 613 | 1 | 575 | 0.0 | 1165 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1236800 | sp|A0A314KSQ4|JAR6_NICAT | 69.739 | 575 | 173 | 1 | 39 | 612 | 5 | 579 | 0.0 | 867 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1236800 | A0A396GF40 | 97.739 | 575 | 13 | 0 | 39 | 613 | 1 | 575 | 0.0 | 1165 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1230170 | Msa1236800 | 0.803345 | 3.643984e-49 | -8.615850e-47 |
Msa1236800 | Msa1432230 | 0.803261 | 3.792456e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1236800 | MtrunA17_Chr8g0347381 | 97.739 | 575 | 13 | 0 | 39 | 613 | 1 | 575 | 0.0 | 1165 |
Msa1236800 | MtrunA17_Chr8g0347391 | 87.759 | 580 | 71 | 0 | 34 | 613 | 3 | 582 | 0.0 | 1065 |
Msa1236800 | MtrunA17_Chr8g0347421 | 87.873 | 569 | 69 | 0 | 39 | 607 | 1 | 569 | 0.0 | 1045 |
Msa1236800 | MtrunA17_Chr7g0275471 | 75.302 | 579 | 139 | 1 | 39 | 613 | 1 | 579 | 0.0 | 931 |
Msa1236800 | MtrunA17_Chr8g0347431 | 84.500 | 400 | 62 | 0 | 214 | 613 | 2 | 401 | 0.0 | 723 |
Msa1236800 | MtrunA17_Chr5g0401641 | 38.144 | 582 | 341 | 8 | 43 | 611 | 15 | 590 | 1.50e-142 | 426 |
Msa1236800 | MtrunA17_Chr5g0421331 | 37.876 | 565 | 337 | 8 | 50 | 609 | 21 | 576 | 4.73e-134 | 404 |
Msa1236800 | MtrunA17_Chr2g0318991 | 35.849 | 583 | 347 | 6 | 49 | 609 | 14 | 591 | 7.11e-128 | 389 |
Msa1236800 | MtrunA17_Chr8g0361551 | 35.345 | 580 | 351 | 6 | 49 | 609 | 15 | 589 | 7.36e-128 | 389 |
Msa1236800 | MtrunA17_Chr8g0352391 | 56.875 | 320 | 86 | 3 | 298 | 613 | 1 | 272 | 5.46e-120 | 357 |
Msa1236800 | MtrunA17_Chr1g0195771 | 35.829 | 561 | 337 | 11 | 49 | 588 | 54 | 612 | 1.49e-114 | 355 |
Msa1236800 | MtrunA17_Chr4g0022401 | 42.469 | 405 | 217 | 6 | 47 | 435 | 17 | 421 | 1.57e-112 | 343 |
Msa1236800 | MtrunA17_Chr5g0401631 | 41.207 | 381 | 209 | 7 | 237 | 611 | 1 | 372 | 1.87e-101 | 313 |
Msa1236800 | MtrunA17_Chr4g0023301 | 33.871 | 496 | 304 | 8 | 130 | 610 | 6 | 492 | 9.33e-100 | 313 |
Msa1236800 | MtrunA17_Chr7g0259291 | 32.696 | 575 | 352 | 14 | 49 | 599 | 5 | 568 | 1.35e-89 | 289 |
Msa1236800 | MtrunA17_Chr1g0169871 | 70.621 | 177 | 48 | 2 | 355 | 527 | 138 | 314 | 2.04e-82 | 262 |
Msa1236800 | MtrunA17_Chr1g0169871 | 75.000 | 64 | 16 | 0 | 48 | 111 | 37 | 100 | 1.50e-23 | 102 |
Msa1236800 | MtrunA17_Chr8g0347441 | 77.273 | 132 | 30 | 0 | 39 | 170 | 1 | 132 | 8.53e-69 | 219 |
Msa1236800 | MtrunA17_Chr4g0022391 | 54.494 | 178 | 79 | 1 | 435 | 612 | 11 | 186 | 7.70e-63 | 206 |
Msa1236800 | MtrunA17_Chr8g0352401 | 75.833 | 120 | 29 | 0 | 48 | 167 | 1 | 120 | 1.09e-58 | 192 |
Msa1236800 | MtrunA17_Chr7g0259401 | 34.074 | 270 | 143 | 7 | 178 | 442 | 10 | 249 | 4.23e-38 | 141 |
Msa1236800 | MtrunA17_Chr5g0401621 | 35.065 | 154 | 99 | 1 | 43 | 195 | 15 | 168 | 3.74e-23 | 97.1 |
Msa1236800 | MtrunA17_Chr4g0023291 | 48.193 | 83 | 43 | 0 | 49 | 131 | 30 | 112 | 2.26e-18 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1236800 | AT2G46370.4 | 65.077 | 587 | 200 | 4 | 29 | 612 | 2 | 586 | 0.0 | 811 |
Msa1236800 | AT2G46370.1 | 65.858 | 577 | 192 | 4 | 39 | 612 | 1 | 575 | 0.0 | 808 |
Msa1236800 | AT2G46370.2 | 65.858 | 577 | 192 | 4 | 39 | 612 | 1 | 575 | 0.0 | 808 |
Msa1236800 | AT2G46370.3 | 66.867 | 498 | 162 | 2 | 116 | 612 | 1 | 496 | 0.0 | 723 |
Msa1236800 | AT4G03400.2 | 48.034 | 585 | 282 | 7 | 49 | 613 | 9 | 591 | 0.0 | 563 |
Msa1236800 | AT4G03400.1 | 48.034 | 585 | 282 | 7 | 49 | 613 | 9 | 591 | 0.0 | 563 |
Msa1236800 | AT2G23170.1 | 39.123 | 570 | 334 | 7 | 50 | 611 | 21 | 585 | 2.50e-141 | 424 |
Msa1236800 | AT4G37390.1 | 38.435 | 575 | 334 | 9 | 50 | 609 | 22 | 591 | 3.87e-137 | 413 |
Msa1236800 | AT1G23160.1 | 37.889 | 578 | 333 | 10 | 47 | 610 | 13 | 578 | 7.55e-137 | 411 |
Msa1236800 | AT4G27260.1 | 37.311 | 595 | 343 | 7 | 40 | 609 | 7 | 596 | 1.23e-136 | 412 |
Msa1236800 | AT2G14960.1 | 38.421 | 570 | 332 | 9 | 50 | 611 | 21 | 579 | 5.44e-136 | 410 |
Msa1236800 | AT1G59500.1 | 39.123 | 570 | 331 | 9 | 50 | 609 | 22 | 585 | 3.40e-133 | 403 |
Msa1236800 | AT5G13320.3 | 37.478 | 579 | 338 | 10 | 46 | 609 | 5 | 574 | 6.71e-133 | 401 |
Msa1236800 | AT5G13320.1 | 37.478 | 579 | 338 | 10 | 46 | 609 | 5 | 574 | 6.71e-133 | 401 |
Msa1236800 | AT5G13320.2 | 37.478 | 579 | 338 | 10 | 46 | 609 | 20 | 589 | 1.05e-132 | 401 |
Msa1236800 | AT1G48660.1 | 36.155 | 567 | 345 | 8 | 52 | 609 | 7 | 565 | 1.65e-130 | 395 |
Msa1236800 | AT1G48660.2 | 36.140 | 570 | 344 | 9 | 52 | 609 | 7 | 568 | 5.61e-130 | 394 |
Msa1236800 | AT5G54510.1 | 36.760 | 574 | 339 | 6 | 55 | 609 | 28 | 596 | 3.07e-129 | 393 |
Msa1236800 | AT5G51470.1 | 37.370 | 578 | 341 | 9 | 41 | 609 | 6 | 571 | 1.17e-126 | 385 |
Msa1236800 | AT5G13360.1 | 37.457 | 582 | 334 | 12 | 47 | 609 | 9 | 579 | 7.04e-122 | 374 |
Msa1236800 | AT5G13360.2 | 37.457 | 582 | 334 | 12 | 47 | 609 | 9 | 579 | 7.04e-122 | 374 |
Msa1236800 | AT5G13360.3 | 37.457 | 582 | 334 | 12 | 47 | 609 | 87 | 657 | 3.45e-121 | 374 |
Msa1236800 | AT5G13370.1 | 35.945 | 587 | 350 | 12 | 42 | 609 | 1 | 580 | 9.45e-120 | 368 |
Msa1236800 | AT5G13350.1 | 35.195 | 591 | 349 | 15 | 42 | 609 | 1 | 580 | 2.26e-119 | 367 |
Msa1236800 | AT5G13350.2 | 35.195 | 591 | 349 | 15 | 42 | 609 | 1 | 580 | 2.26e-119 | 367 |
Msa1236800 | AT2G47750.1 | 35.862 | 580 | 354 | 10 | 43 | 609 | 3 | 577 | 7.20e-117 | 360 |
Msa1236800 | AT5G13380.1 | 35.602 | 573 | 341 | 13 | 55 | 609 | 47 | 609 | 1.77e-114 | 355 |
Msa1236800 | AT1G28130.1 | 34.057 | 599 | 348 | 12 | 47 | 609 | 9 | 596 | 1.52e-111 | 347 |
Msa1236800 | AT5G51470.2 | 36.853 | 483 | 289 | 6 | 136 | 609 | 6 | 481 | 3.27e-101 | 317 |
Msa1236800 | AT1G48670.1 | 32.332 | 566 | 315 | 11 | 54 | 609 | 10 | 517 | 8.67e-100 | 314 |
Msa1236800 | AT1G48670.2 | 35.294 | 408 | 250 | 6 | 210 | 609 | 5 | 406 | 4.74e-89 | 282 |
Msa1236800 | AT1G28130.2 | 36.429 | 420 | 224 | 9 | 223 | 609 | 44 | 453 | 6.23e-85 | 273 |
Msa1236800 | AT1G48690.1 | 34.197 | 193 | 112 | 4 | 52 | 238 | 7 | 190 | 2.72e-24 | 100 |
Find 125 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTTAAGGCCTTGCCATTT+TGG | 0.173440 | 8_2:+15980539 | None:intergenic |
ACACATGCCTTGAAGCTTTC+AGG | 0.188228 | 8_2:+15981450 | None:intergenic |
GGAAACACTGAAGAAGATTT+TGG | 0.215335 | 8_2:-15981529 | Msa1236800:CDS |
GTAAAATATTTATATATATA+AGG | 0.218639 | 8_2:+15978097 | None:intergenic |
CAGGACACTATGTTATCTTT+TGG | 0.231173 | 8_2:-15978476 | Msa1236800:CDS |
ACAATTGATTAAATTCAATA+AGG | 0.232011 | 8_2:-15978167 | Msa1236800:exon |
AACATAGTGTCCTGGTTCTT+TGG | 0.254133 | 8_2:+15978485 | None:intergenic |
CCTTTGTTGACTTCTGAGTA+TGG | 0.254938 | 8_2:-15979986 | Msa1236800:CDS |
TCAGAACCTTTGAACAAGTT+TGG | 0.258443 | 8_2:-15980264 | Msa1236800:CDS |
TAGAGTGATTGGTGAAAATT+AGG | 0.278144 | 8_2:+15980370 | None:intergenic |
ATTGGTCACTTACAAAGATT+TGG | 0.278435 | 8_2:-15981424 | Msa1236800:CDS |
GCTAACTCAGGAGCCTCTTT+AGG | 0.283945 | 8_2:+15979929 | None:intergenic |
CTTGAACATTATGTTGGATT+AGG | 0.286844 | 8_2:-15978297 | Msa1236800:CDS |
TGTGTTCTTGTCAATGTTGA+TGG | 0.287226 | 8_2:+15978602 | None:intergenic |
CATAATGTTCAAGAATCTTC+TGG | 0.290500 | 8_2:+15978307 | None:intergenic |
CAGAACCTTTGAACAAGTTT+GGG | 0.324841 | 8_2:-15980263 | Msa1236800:CDS |
CAATTGATTAAATTCAATAA+GGG | 0.338269 | 8_2:-15978166 | Msa1236800:exon |
AACATATATGTGACAAAATC+TGG | 0.339192 | 8_2:+15978062 | None:intergenic |
TGGATCAAGTTAGCTAGTTC+AGG | 0.340099 | 8_2:+15980145 | None:intergenic |
CCTTGAACATACTTGACATT+AGG | 0.341198 | 8_2:+15980070 | None:intergenic |
TCAACTATTCTATTGATATA+AGG | 0.342032 | 8_2:+15981399 | None:intergenic |
CTTTAAACTACTTATTAGAT+TGG | 0.349459 | 8_2:+15978127 | None:intergenic |
ATTCCTTTGACACAACTTGA+TGG | 0.354329 | 8_2:-15979866 | Msa1236800:CDS |
GTCGATGCCGCTGAATTTCA+TGG | 0.367139 | 8_2:-15982924 | None:intergenic |
GTTGTTAGCTGAAGAGAAAA+TGG | 0.368303 | 8_2:-15978541 | Msa1236800:CDS |
TTCATTGCATGCTTGTATCC+TGG | 0.373701 | 8_2:+15980439 | None:intergenic |
AAGTTAGCTAGTTCAGGATT+TGG | 0.373912 | 8_2:+15980151 | None:intergenic |
AGGGGATGTGGTAAAGGTTA+TGG | 0.375137 | 8_2:-15978682 | Msa1236800:CDS |
TAAAATATTTATATATATAA+GGG | 0.375710 | 8_2:+15978098 | None:intergenic |
GCTGAATACTTGCAGAGTTT+AGG | 0.375997 | 8_2:-15981492 | Msa1236800:CDS |
TGATGAATGTTGCACATGTT+TGG | 0.385814 | 8_2:-15978421 | Msa1236800:CDS |
CAAAGTGTTGCAAATATTGT+TGG | 0.386965 | 8_2:-15978223 | Msa1236800:CDS |
GGGGATGTGGTAAAGGTTAT+GGG | 0.400710 | 8_2:-15978681 | Msa1236800:CDS |
AACTGATCCTGAAAGCTTCA+AGG | 0.401122 | 8_2:-15981457 | Msa1236800:CDS |
AGAGAGTTTCCTATCCAAAA+TGG | 0.404103 | 8_2:-15980553 | Msa1236800:CDS |
AATGCATAGGATTGAGCAAT+TGG | 0.406780 | 8_2:-15980117 | Msa1236800:CDS |
CCTAATGTCAAGTATGTTCA+AGG | 0.408097 | 8_2:-15980070 | Msa1236800:CDS |
GTGCAGGCTTATACAGATAT+AGG | 0.409763 | 8_2:-15978707 | Msa1236800:intron |
AGTATGGTTCTTCTGAAGGT+TGG | 0.412179 | 8_2:-15979970 | Msa1236800:CDS |
TCCGAACAAGTCGGAGTTCA+AGG | 0.425031 | 8_2:+15978340 | None:intergenic |
CAATCACTGCTATCTCCTTA+AGG | 0.427592 | 8_2:-15981344 | Msa1236800:intron |
CTTAAGGAGATAGCAGTGAT+TGG | 0.436756 | 8_2:+15981345 | None:intergenic |
GCAAACTATCACAAGCTAAA+GGG | 0.436897 | 8_2:-15980504 | Msa1236800:CDS |
CCTGTTCCTAAAGGCAAAAG+AGG | 0.441171 | 8_2:+15981133 | None:intergenic |
CAACAATATTTGCAACACTT+TGG | 0.447856 | 8_2:+15978224 | None:intergenic |
TTCACATCAGTTAATCCAAC+TGG | 0.449966 | 8_2:+15979824 | None:intergenic |
TCTGAGTATGGTTCTTCTGA+AGG | 0.455124 | 8_2:-15979974 | Msa1236800:CDS |
TATATCAATAGAATAGTTGA+TGG | 0.455629 | 8_2:-15981396 | Msa1236800:CDS |
ATGAAAGCACTTCAATCTCC+TGG | 0.455873 | 8_2:-15980421 | Msa1236800:CDS |
TGCAACACTTTGGTGTTTGT+AGG | 0.456160 | 8_2:+15978234 | None:intergenic |
AAGATTCTTGAACATTATGT+TGG | 0.462415 | 8_2:-15978303 | Msa1236800:CDS |
GACACAACTTGATGGAACTA+AGG | 0.462979 | 8_2:-15979858 | Msa1236800:CDS |
AATTCAAAGTAAGCAATTTG+AGG | 0.463474 | 8_2:+15979890 | None:intergenic |
TAGGCTAGGGGATGTGGTAA+AGG | 0.465598 | 8_2:-15978688 | Msa1236800:CDS |
TTGCAGAGTTTAGGACTCAA+TGG | 0.466761 | 8_2:-15981483 | Msa1236800:CDS |
CAGATATAGGCTAGGGGATG+TGG | 0.467515 | 8_2:-15978694 | Msa1236800:CDS |
CCCTTGAACTCCGACTTGTT+CGG | 0.477568 | 8_2:-15978341 | Msa1236800:CDS |
GAGAGGCTAACAAAGGATGC+TGG | 0.479734 | 8_2:-15981564 | Msa1236800:CDS |
GCTGCTGTAGATGAAGCTTA+AGG | 0.486505 | 8_2:+15980525 | None:intergenic |
CAATGTTGATGGTGAGCATA+AGG | 0.486689 | 8_2:+15978613 | None:intergenic |
TGTAGTTCTGGTACTAGTCA+AGG | 0.489759 | 8_2:-15981218 | Msa1236800:intron |
AGCAAACTATCACAAGCTAA+AGG | 0.491878 | 8_2:-15980505 | Msa1236800:CDS |
GCCAATGTATTCAGAAATCC+AGG | 0.494020 | 8_2:-15980457 | Msa1236800:CDS |
AGAGGTGGCAGTAGAGTGAT+TGG | 0.496209 | 8_2:+15980359 | None:intergenic |
GGATTAACTGATGTGAAGAT+TGG | 0.505405 | 8_2:-15979818 | Msa1236800:CDS |
CTCTACTGCCACCTCTTATG+TGG | 0.505432 | 8_2:-15980352 | Msa1236800:CDS |
TGCAAAGCAGTCCACATAAG+AGG | 0.507954 | 8_2:+15980341 | None:intergenic |
GGATGCTGGGAATGTTCAAA+AGG | 0.507958 | 8_2:-15981550 | Msa1236800:CDS |
GACATAGCAGTTCTAATGGA+TGG | 0.509602 | 8_2:+15980187 | None:intergenic |
CTTCAAGGCATGTGTTCCAT+TGG | 0.511917 | 8_2:-15981442 | Msa1236800:CDS |
TTCTTCCCAAACTTGTTCAA+AGG | 0.512345 | 8_2:+15980258 | None:intergenic |
TCAAACAATTCATCATTCCA+TGG | 0.514252 | 8_2:+15981179 | None:intergenic |
ATAGTAATACCTGTTCCTAA+AGG | 0.516100 | 8_2:+15981124 | None:intergenic |
GAAGATTGGTGAAGATTATG+AGG | 0.519278 | 8_2:-15979804 | Msa1236800:CDS |
GTTCCATCAAGTTGTGTCAA+AGG | 0.519570 | 8_2:+15979863 | None:intergenic |
ACATCATGAGGGCTGCATCC+AGG | 0.523792 | 8_2:+15980403 | None:intergenic |
TCAATCCTATGCATTTCTTG+TGG | 0.525426 | 8_2:+15980125 | None:intergenic |
TTCAAATGTAAATCCTAAAG+AGG | 0.532877 | 8_2:-15979942 | Msa1236800:CDS |
CTTATTACTGACATCAAAGA+AGG | 0.535229 | 8_2:-15980235 | Msa1236800:CDS |
ATTTCTGAATACATTGGCTG+TGG | 0.541655 | 8_2:+15980462 | None:intergenic |
AGGGATCATGACTGGTGCAA+TGG | 0.543132 | 8_2:-15980050 | Msa1236800:CDS |
TTGATAACAGCTGCAGGTGA+AGG | 0.545506 | 8_2:-15981648 | Msa1236800:intron |
TGAAGGAGTTGTGAAGATGA+AGG | 0.551299 | 8_2:-15981631 | Msa1236800:CDS |
GCTTATACAGATATAGGCTA+GGG | 0.552915 | 8_2:-15978701 | Msa1236800:CDS |
CCGAACAAGTCGGAGTTCAA+GGG | 0.559483 | 8_2:+15978341 | None:intergenic |
AGAGGCTAACAAAGGATGCT+GGG | 0.561325 | 8_2:-15981563 | Msa1236800:CDS |
TTGTCACATATATGTTTGTG+AGG | 0.569410 | 8_2:-15978055 | Msa1236800:three_prime_UTR |
AAATCTTTGTAAGTGACCAA+TGG | 0.572733 | 8_2:+15981426 | None:intergenic |
CAAAAGATAACATAGTGTCC+TGG | 0.574844 | 8_2:+15978477 | None:intergenic |
GGCTTATACAGATATAGGCT+AGG | 0.576800 | 8_2:-15978702 | Msa1236800:CDS |
TCCTGGATTTCTGAATACAT+TGG | 0.580005 | 8_2:+15980456 | None:intergenic |
TTTCTCTTCAGCTAACAACA+TGG | 0.580961 | 8_2:+15978545 | None:intergenic |
TATGTTCAAGGGATCATGAC+TGG | 0.581973 | 8_2:-15980058 | Msa1236800:CDS |
CAAACTATCACAAGCTAAAG+GGG | 0.586566 | 8_2:-15980503 | Msa1236800:CDS |
TTGATCCACAAGAAATGCAT+AGG | 0.591375 | 8_2:-15980130 | Msa1236800:CDS |
GAATGATTTACAATTATCAG+TGG | 0.599036 | 8_2:-15978577 | Msa1236800:CDS |
GAACAGCGGCATGGCAACGA+CGG | 0.599700 | 8_2:-15982854 | Msa1236800:CDS |
AAGTGATAGAAGAATTTGAG+AGG | 0.600729 | 8_2:-15981581 | Msa1236800:CDS |
CTAATGTCAAGTATGTTCAA+GGG | 0.605318 | 8_2:-15980069 | Msa1236800:CDS |
AAGGTGGAGCTTGAGCCAGT+TGG | 0.606144 | 8_2:-15979839 | Msa1236800:CDS |
ACAACATAAGTAGCTAACTC+AGG | 0.606822 | 8_2:+15979917 | None:intergenic |
GGACTGAATATCACATCATG+AGG | 0.611298 | 8_2:+15980391 | None:intergenic |
GTTAGTTCTAGAAAAGTCAA+AGG | 0.611504 | 8_2:-15978372 | Msa1236800:CDS |
CAGCGGCATGGCAACGACGG+TGG | 0.613557 | 8_2:-15982851 | Msa1236800:intron |
AATAATTGAGAAATTTGACA+TGG | 0.619152 | 8_2:-15981607 | Msa1236800:CDS |
GTTAAGACACTATGCAGGAG+AGG | 0.622561 | 8_2:-15980011 | Msa1236800:CDS |
ATAGGATTGAGCAATTGGTA+TGG | 0.622644 | 8_2:-15980112 | Msa1236800:CDS |
TAGAAAAGTCAAAGGTATTG+CGG | 0.623191 | 8_2:-15978364 | Msa1236800:CDS |
GAACTCCGACTTGTTCGGAA+AGG | 0.630222 | 8_2:-15978336 | Msa1236800:CDS |
ACAACTTGATGGAACTAAGG+TGG | 0.637434 | 8_2:-15979855 | Msa1236800:CDS |
AGAATTTGAGAGGCTAACAA+AGG | 0.640125 | 8_2:-15981571 | Msa1236800:CDS |
ATGTTCCTTTCCGAACAAGT+CGG | 0.642426 | 8_2:+15978331 | None:intergenic |
GTTTCCTATCCAAAATGGCA+AGG | 0.646453 | 8_2:-15980548 | Msa1236800:CDS |
TGAGTCAGTTCAAGACACCT+AGG | 0.648473 | 8_2:-15978266 | Msa1236800:CDS |
AAATCACATGAACAGCGGCA+TGG | 0.649699 | 8_2:-15982863 | Msa1236800:CDS |
TTTGTAGGAGCAACACACCT+AGG | 0.657654 | 8_2:+15978249 | None:intergenic |
ATTGATTTATCCAAAGAACC+AGG | 0.665402 | 8_2:-15978495 | Msa1236800:CDS |
TAGGCTGCCATGAAATTCAG+CGG | 0.667431 | 8_2:+15982917 | None:intergenic |
CCATACTCAGAAGTCAACAA+AGG | 0.673745 | 8_2:+15979986 | None:intergenic |
AAAGCAGTCCACATAAGAGG+TGG | 0.677682 | 8_2:+15980344 | None:intergenic |
GACTGAATATCACATCATGA+GGG | 0.679391 | 8_2:+15980392 | None:intergenic |
CTTATACAGATATAGGCTAG+GGG | 0.689485 | 8_2:-15978700 | Msa1236800:CDS |
CTGTAAAATCACATGAACAG+CGG | 0.707689 | 8_2:-15982868 | Msa1236800:CDS |
AAACTATCACAAGCTAAAGG+GGG | 0.711603 | 8_2:-15980502 | Msa1236800:CDS |
GGTTTGATATATCTGCACTG+TGG | 0.735598 | 8_2:+15981154 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTATTATTAAAAAAATA+TGG | + | chr8_2:15978986-15979005 | None:intergenic | 0.0% |
!! | TAAAATATTTATATATATAA+GGG | + | chr8_2:15982803-15982822 | None:intergenic | 0.0% |
!! | AAAAAAATAATCTTCATTAT+GGG | - | chr8_2:15978623-15978642 | Msa1236800:CDS | 10.0% |
!! | AAGTAAAAAATAATTAATGA+TGG | + | chr8_2:15981913-15981932 | None:intergenic | 10.0% |
!!! | ACTAGATTTTTTTTTTTAAA+AGG | + | chr8_2:15982113-15982132 | None:intergenic | 10.0% |
!! | CTATAAAAAATATAAAAATG+GGG | - | chr8_2:15982870-15982889 | Msa1236800:CDS | 10.0% |
!!! | AGTTTTTTCTTTAATTAGAA+AGG | - | chr8_2:15978114-15978133 | Msa1236800:three_prime_UTR | 15.0% |
!!! | CATAATGAAGATTATTTTTT+TGG | + | chr8_2:15978624-15978643 | None:intergenic | 15.0% |
!! | CAAAAAAATAATCTTCATTA+TGG | - | chr8_2:15978622-15978641 | Msa1236800:CDS | 15.0% |
!!! | TTCATTTTATAAATCATTAC+TGG | - | chr8_2:15979935-15979954 | Msa1236800:CDS | 15.0% |
!!! | AAGGCTATTAATAAATATTT+TGG | + | chr8_2:15981144-15981163 | None:intergenic | 15.0% |
!!! | TATTAATCCCTATATATTTT+AGG | + | chr8_2:15981259-15981278 | None:intergenic | 15.0% |
!! | TAACTAATTTATAGAATGAT+AGG | + | chr8_2:15981311-15981330 | None:intergenic | 15.0% |
!!! | TACTTTTCATTTTTATTGTA+TGG | - | chr8_2:15981753-15981772 | Msa1236800:intron | 15.0% |
!!! | ACTTTTCATTTTTATTGTAT+GGG | - | chr8_2:15981754-15981773 | Msa1236800:intron | 15.0% |
!!! | ATTTATTTTTATAAATGGAG+AGG | + | chr8_2:15981821-15981840 | None:intergenic | 15.0% |
!! | TCTCCATTTATAAAAATAAA+TGG | - | chr8_2:15981820-15981839 | Msa1236800:intron | 15.0% |
!!! | CTTCCATTTATTTTTATAAA+TGG | + | chr8_2:15981826-15981845 | None:intergenic | 15.0% |
!! | AACATAATTAGACTTAATAA+AGG | + | chr8_2:15982148-15982167 | None:intergenic | 15.0% |
!! | ACAATTGATTAAATTCAATA+AGG | - | chr8_2:15982731-15982750 | Msa1236800:intron | 15.0% |
!! | CAATTGATTAAATTCAATAA+GGG | - | chr8_2:15982732-15982751 | Msa1236800:intron | 15.0% |
!! | AAGGACAATAATAAAAAAGT+GGG | + | chr8_2:15978651-15978670 | None:intergenic | 20.0% |
!! | AAAGGACAATAATAAAAAAG+TGG | + | chr8_2:15978652-15978671 | None:intergenic | 20.0% |
!! | AATAATTGAGAAATTTGACA+TGG | - | chr8_2:15979291-15979310 | Msa1236800:intron | 20.0% |
!! | TCAACTATTCTATTGATATA+AGG | + | chr8_2:15979502-15979521 | None:intergenic | 20.0% |
!! | TATATCAATAGAATAGTTGA+TGG | - | chr8_2:15979502-15979521 | Msa1236800:intron | 20.0% |
!!! | CTTCTTTTTAAAAACATCAT+CGG | - | chr8_2:15980144-15980163 | Msa1236800:CDS | 20.0% |
!! | AGAAACTACCTAAAATATAT+AGG | - | chr8_2:15981248-15981267 | Msa1236800:intron | 20.0% |
!! | GAAACTACCTAAAATATATA+GGG | - | chr8_2:15981249-15981268 | Msa1236800:intron | 20.0% |
!! | ATATATAGGGATTAATATGA+CGG | - | chr8_2:15981262-15981281 | Msa1236800:intron | 20.0% |
!! | TATAAATTAGTTAATGTGTC+AGG | - | chr8_2:15981318-15981337 | Msa1236800:intron | 20.0% |
!!! | TTTATGTTTTGTTTTTGTCT+AGG | - | chr8_2:15981427-15981446 | Msa1236800:CDS | 20.0% |
!!! | TTATGTTTTGTTTTTGTCTA+GGG | - | chr8_2:15981428-15981447 | Msa1236800:CDS | 20.0% |
!!! | ATATACTAGTAGTATGTTTT+TGG | - | chr8_2:15981555-15981574 | Msa1236800:CDS | 20.0% |
!! | CTTTAAACTACTTATTAGAT+TGG | + | chr8_2:15982774-15982793 | None:intergenic | 20.0% |
! | TCATTTGAAAGGTTAGAATT+TGG | - | chr8_2:15978197-15978216 | Msa1236800:CDS | 25.0% |
! | AGGACAATAATAAAAAAGTG+GGG | + | chr8_2:15978650-15978669 | None:intergenic | 25.0% |
! | AGTATAAGGAAGGAATTATA+AGG | + | chr8_2:15978693-15978712 | None:intergenic | 25.0% |
!!! | ACTTTTTCTTAGTATAAGGA+AGG | + | chr8_2:15978703-15978722 | None:intergenic | 25.0% |
!!! | CCAAACTTTTTCTTAGTATA+AGG | + | chr8_2:15978707-15978726 | None:intergenic | 25.0% |
! | CCTTATACTAAGAAAAAGTT+TGG | - | chr8_2:15978704-15978723 | Msa1236800:CDS | 25.0% |
! | GAAAGCAAAAATATATACCA+TGG | - | chr8_2:15979702-15979721 | Msa1236800:intron | 25.0% |
!! | TTAATGTATTGATGCTATGT+AGG | + | chr8_2:15979840-15979859 | None:intergenic | 25.0% |
!! | CTTGATATTGAAAGTTTGTT+TGG | + | chr8_2:15980262-15980281 | None:intergenic | 25.0% |
! | AAACTTTCAATATCAAGTGT+CGG | - | chr8_2:15980265-15980284 | Msa1236800:CDS | 25.0% |
!!! | TGTCTTAACTTTTTCACATA+AGG | + | chr8_2:15980876-15980895 | None:intergenic | 25.0% |
! | TTCAAATGTAAATCCTAAAG+AGG | - | chr8_2:15980956-15980975 | Msa1236800:intron | 25.0% |
! | AATTCAAAGTAAGCAATTTG+AGG | + | chr8_2:15981011-15981030 | None:intergenic | 25.0% |
! | TCTTAAGAAGAGGAAAAAAA+AGG | + | chr8_2:15981163-15981182 | None:intergenic | 25.0% |
!! | CTACTTTGTTATGTTACAAT+GGG | - | chr8_2:15981370-15981389 | Msa1236800:CDS | 25.0% |
!!! | ATGTTTTTGGAAAGATTGAA+TGG | - | chr8_2:15981568-15981587 | Msa1236800:CDS | 25.0% |
! | AATTATGGAGGAATTGATTA+GGG | - | chr8_2:15981651-15981670 | Msa1236800:intron | 25.0% |
! | TACATAACAAATGTTACACA+AGG | - | chr8_2:15981712-15981731 | Msa1236800:intron | 25.0% |
!!! | TTCATTTTTATTGTATGGGA+TGG | - | chr8_2:15981758-15981777 | Msa1236800:intron | 25.0% |
!!! | TCATTTTTATTGTATGGGAT+GGG | - | chr8_2:15981759-15981778 | Msa1236800:intron | 25.0% |
! | AATAAATGGAAGAGTCAATT+TGG | - | chr8_2:15981834-15981853 | Msa1236800:intron | 25.0% |
!!! | TGTGTTTTTATCTCTCTAAA+TGG | - | chr8_2:15981937-15981956 | Msa1236800:intron | 25.0% |
! | GGATACAAATTACCTAAATT+TGG | + | chr8_2:15982046-15982065 | None:intergenic | 25.0% |
! | GGTACATATTTAATGTGATT+AGG | + | chr8_2:15982092-15982111 | None:intergenic | 25.0% |
! | ATGTTAGTGACAATTAATCT+TGG | - | chr8_2:15982163-15982182 | Msa1236800:intron | 25.0% |
! | GAATGATTTACAATTATCAG+TGG | - | chr8_2:15982321-15982340 | Msa1236800:intron | 25.0% |
! | AAGATTCTTGAACATTATGT+TGG | - | chr8_2:15982595-15982614 | Msa1236800:intron | 25.0% |
! | AACATATATGTGACAAAATC+TGG | + | chr8_2:15982839-15982858 | None:intergenic | 25.0% |
! | AAAATATAAAAATGGGGTCA+AGG | - | chr8_2:15982876-15982895 | Msa1236800:CDS | 25.0% |
TATCTTAGATACCTCATTGA+AGG | - | chr8_2:15978425-15978444 | Msa1236800:CDS | 30.0% | |
TAAATAAGAGACCTTCAATG+AGG | + | chr8_2:15978439-15978458 | None:intergenic | 30.0% | |
TTTGCACTATTTGCTTCTAT+TGG | - | chr8_2:15978478-15978497 | Msa1236800:CDS | 30.0% | |
!! | TATTTGCTTCTATTGGTTCT+AGG | - | chr8_2:15978485-15978504 | Msa1236800:CDS | 30.0% |
!! | AAATTCTCATCTTGGTTTTC+TGG | + | chr8_2:15978551-15978570 | None:intergenic | 30.0% |
CATCATGAAAATTCTCATCT+TGG | + | chr8_2:15978559-15978578 | None:intergenic | 30.0% | |
! | TTTGCAAAGAACCATACTTT+TGG | - | chr8_2:15978586-15978605 | Msa1236800:CDS | 30.0% |
! | TTGTCCTTTTTACCCTTAAA+AGG | - | chr8_2:15978663-15978682 | Msa1236800:CDS | 30.0% |
! | TGTCCTTTTTACCCTTAAAA+GGG | - | chr8_2:15978664-15978683 | Msa1236800:CDS | 30.0% |
! | TTATAAGGTAGCCCTTTTAA+GGG | + | chr8_2:15978678-15978697 | None:intergenic | 30.0% |
! | ATTATAAGGTAGCCCTTTTA+AGG | + | chr8_2:15978679-15978698 | None:intergenic | 30.0% |
CATTAGAAAGAACAAAGCAA+AGG | + | chr8_2:15978833-15978852 | None:intergenic | 30.0% | |
! | CTTTGCTTTGTTCTTTCTAA+TGG | - | chr8_2:15978831-15978850 | Msa1236800:intron | 30.0% |
! | ATTTTCAAAATCCATTCTGC+TGG | - | chr8_2:15978913-15978932 | Msa1236800:intron | 30.0% |
! | TTTTCAAAATCCATTCTGCT+GGG | - | chr8_2:15978914-15978933 | Msa1236800:intron | 30.0% |
TATGTAGTCAAATCAATGAG+TGG | + | chr8_2:15979208-15979227 | None:intergenic | 30.0% | |
AAGTGATAGAAGAATTTGAG+AGG | - | chr8_2:15979317-15979336 | Msa1236800:intron | 30.0% | |
AAATCTTTGTAAGTGACCAA+TGG | + | chr8_2:15979475-15979494 | None:intergenic | 30.0% | |
ATTGGTCACTTACAAAGATT+TGG | - | chr8_2:15979474-15979493 | Msa1236800:intron | 30.0% | |
!!! | AAGAGTGTTTTCATACCTTA+AGG | + | chr8_2:15979572-15979591 | None:intergenic | 30.0% |
!!! | CAACTTTTTCACATTCAACT+GGG | + | chr8_2:15979611-15979630 | None:intergenic | 30.0% |
!!! | TCAACTTTTTCACATTCAAC+TGG | + | chr8_2:15979612-15979631 | None:intergenic | 30.0% |
!! | AACTTGTGTTTTTGTAGTTC+TGG | - | chr8_2:15979668-15979687 | Msa1236800:intron | 30.0% |
TCAAACAATTCATCATTCCA+TGG | + | chr8_2:15979722-15979741 | None:intergenic | 30.0% | |
ATAGTAATACCTGTTCCTAA+AGG | + | chr8_2:15979777-15979796 | None:intergenic | 30.0% | |
TAAATTGAAGTCACCTTTGA+CGG | - | chr8_2:15979857-15979876 | Msa1236800:CDS | 30.0% | |
!! | ATGAAGCATTGACACTTAAA+TGG | + | chr8_2:15980175-15980194 | None:intergenic | 30.0% |
TAGAGTGATTGGTGAAAATT+AGG | + | chr8_2:15980531-15980550 | None:intergenic | 30.0% | |
CTTATTACTGACATCAAAGA+AGG | - | chr8_2:15980663-15980682 | Msa1236800:intron | 30.0% | |
!! | TTTTGACATAGCAGTTCTAA+TGG | + | chr8_2:15980718-15980737 | None:intergenic | 30.0% |
TTGACATTAGGAAAAAGTTC+TGG | + | chr8_2:15980819-15980838 | None:intergenic | 30.0% | |
CTAATGTCAAGTATGTTCAA+GGG | - | chr8_2:15980829-15980848 | Msa1236800:intron | 30.0% | |
AAAAAGTTAAGACACTATGC+AGG | - | chr8_2:15980882-15980901 | Msa1236800:intron | 30.0% | |
!!! | ATAAATATTTTGGTACCTGC+AGG | + | chr8_2:15981134-15981153 | None:intergenic | 30.0% |
!!! | ATGATGGGTTTTCATACTTT+AGG | - | chr8_2:15981197-15981216 | Msa1236800:CDS | 30.0% |
!!! | TGACGGATTTTCATATACTT+TGG | - | chr8_2:15981279-15981298 | Msa1236800:intron | 30.0% |
! | GCTACTTTGTTATGTTACAA+TGG | - | chr8_2:15981369-15981388 | Msa1236800:CDS | 30.0% |
! | AGAGTGGTTATTGTGAATTT+TGG | - | chr8_2:15981459-15981478 | Msa1236800:CDS | 30.0% |
ATTAGTATGTTGTAAGTGAG+TGG | - | chr8_2:15981626-15981645 | Msa1236800:CDS | 30.0% | |
CAATTATGGAGGAATTGATT+AGG | - | chr8_2:15981650-15981669 | Msa1236800:intron | 30.0% | |
! | GATAAAGCTTTTAGCACAAA+TGG | - | chr8_2:15981686-15981705 | Msa1236800:intron | 30.0% |
GAGAGATAGACACAAAAAAT+AGG | - | chr8_2:15981858-15981877 | Msa1236800:intron | 30.0% | |
AGATAGACACAAAAAATAGG+TGG | - | chr8_2:15981861-15981880 | Msa1236800:intron | 30.0% | |
! | GTTTTTATCTCTCTAAATGG+AGG | - | chr8_2:15981940-15981959 | Msa1236800:intron | 30.0% |
GAAATGGAGAGGAAAATAAA+TGG | - | chr8_2:15981962-15981981 | Msa1236800:intron | 30.0% | |
! | GTAATTTGTATCCCTACATA+AGG | - | chr8_2:15982053-15982072 | Msa1236800:intron | 30.0% |
TGTACTATGTTCCTTATGTA+GGG | + | chr8_2:15982067-15982086 | None:intergenic | 30.0% | |
ATGTACTATGTTCCTTATGT+AGG | + | chr8_2:15982068-15982087 | None:intergenic | 30.0% | |
ATTAATCTTGGATAATGTGC+AGG | - | chr8_2:15982175-15982194 | Msa1236800:intron | 30.0% | |
!!! | TGATTTTTGGAGTTGAGTTA+TGG | + | chr8_2:15982246-15982265 | None:intergenic | 30.0% |
! | CTACGAAGAAACTTGATTTT+TGG | + | chr8_2:15982259-15982278 | None:intergenic | 30.0% |
CAAAAATCAAGTTTCTTCGT+AGG | - | chr8_2:15982257-15982276 | Msa1236800:intron | 30.0% | |
! | ATTGATTTATCCAAAGAACC+AGG | - | chr8_2:15982403-15982422 | Msa1236800:intron | 30.0% |
! | AGGACACTATGTTATCTTTT+GGG | - | chr8_2:15982423-15982442 | Msa1236800:intron | 30.0% |
!! | GTTAGTTCTAGAAAAGTCAA+AGG | - | chr8_2:15982526-15982545 | Msa1236800:intron | 30.0% |
!! | TAGAAAAGTCAAAGGTATTG+CGG | - | chr8_2:15982534-15982553 | Msa1236800:intron | 30.0% |
CATAATGTTCAAGAATCTTC+TGG | + | chr8_2:15982594-15982613 | None:intergenic | 30.0% | |
CTTGAACATTATGTTGGATT+AGG | - | chr8_2:15982601-15982620 | Msa1236800:intron | 30.0% | |
CAACAATATTTGCAACACTT+TGG | + | chr8_2:15982677-15982696 | None:intergenic | 30.0% | |
!! | CAAAGTGTTGCAAATATTGT+TGG | - | chr8_2:15982675-15982694 | Msa1236800:intron | 30.0% |
TTGTCACATATATGTTTGTG+AGG | - | chr8_2:15982843-15982862 | Msa1236800:intron | 30.0% | |
!!! | TTGGTTTAGCTTTTGAGCAT+AGG | + | chr8_2:15978003-15978022 | None:intergenic | 35.0% |
! | GTGATTTTACAGCAATCTCT+TGG | + | chr8_2:15978022-15978041 | None:intergenic | 35.0% |
CTGTAAAATCACATGAACAG+CGG | - | chr8_2:15978030-15978049 | Msa1236800:three_prime_UTR | 35.0% | |
!!! | TGCTGTTTTTGCTCTTCTAA+TGG | - | chr8_2:15978087-15978106 | Msa1236800:three_prime_UTR | 35.0% |
AAGAAATAACAAGTGACACG+TGG | - | chr8_2:15978137-15978156 | Msa1236800:three_prime_UTR | 35.0% | |
TCTAACCTTTCAAATGACAC+AGG | + | chr8_2:15978194-15978213 | None:intergenic | 35.0% | |
ACAGAAAGATAGGAGGATAA+AGG | + | chr8_2:15978225-15978244 | None:intergenic | 35.0% | |
TGTCAAAACAGAAAGATAGG+AGG | + | chr8_2:15978232-15978251 | None:intergenic | 35.0% | |
GACTGTCAAAACAGAAAGAT+AGG | + | chr8_2:15978235-15978254 | None:intergenic | 35.0% | |
TTTGTGTGTCACATGAATGT+GGG | + | chr8_2:15978274-15978293 | None:intergenic | 35.0% | |
ATTTGTGTGTCACATGAATG+TGG | + | chr8_2:15978275-15978294 | None:intergenic | 35.0% | |
!!! | ATCTTGGTTTTCTGGTTTCT+TGG | + | chr8_2:15978543-15978562 | None:intergenic | 35.0% |
! | AAGAACCATACTTTTGGCAA+AGG | - | chr8_2:15978592-15978611 | Msa1236800:CDS | 35.0% |
! | AGAACCATACTTTTGGCAAA+GGG | - | chr8_2:15978593-15978612 | Msa1236800:CDS | 35.0% |
!! | TAGCCCTTTTAAGGGTAAAA+AGG | + | chr8_2:15978670-15978689 | None:intergenic | 35.0% |
GTGATAGAAAACAACAGAGT+TGG | + | chr8_2:15978787-15978806 | None:intergenic | 35.0% | |
!!! | TTCTGTCTTTGTTTTCCAAC+TGG | + | chr8_2:15978941-15978960 | None:intergenic | 35.0% |
TCTCCAACTTCAATAGTCTT+TGG | - | chr8_2:15979105-15979124 | Msa1236800:intron | 35.0% | |
AAGCCAAAGACTATTGAAGT+TGG | + | chr8_2:15979111-15979130 | None:intergenic | 35.0% | |
!!! | TGAGTGGCATTTTTTCAGTT+TGG | + | chr8_2:15979192-15979211 | None:intergenic | 35.0% |
AGAATTTGAGAGGCTAACAA+AGG | - | chr8_2:15979327-15979346 | Msa1236800:intron | 35.0% | |
! | GGAAACACTGAAGAAGATTT+TGG | - | chr8_2:15979369-15979388 | Msa1236800:intron | 35.0% |
! | GATTTTTCTCCTATTCTCAC+TGG | - | chr8_2:15979526-15979545 | Msa1236800:intron | 35.0% |
!!! | ATTGGTTTTCCAGTGAGAAT+AGG | + | chr8_2:15979538-15979557 | None:intergenic | 35.0% |
! | ATCAAACCTCTTTTGCCTTT+AGG | - | chr8_2:15979759-15979778 | Msa1236800:intron | 35.0% |
TGAATGTAACATTGTGAGTG+TGG | + | chr8_2:15979909-15979928 | None:intergenic | 35.0% | |
ACGCGTCAATAATGTTTCAT+AGG | + | chr8_2:15980210-15980229 | None:intergenic | 35.0% | |
ATAGGAAACTCTCTGCATAA+TGG | + | chr8_2:15980339-15980358 | None:intergenic | 35.0% | |
AGAGAGTTTCCTATCCAAAA+TGG | - | chr8_2:15980345-15980364 | Msa1236800:CDS | 35.0% | |
AGCAAACTATCACAAGCTAA+AGG | - | chr8_2:15980393-15980412 | Msa1236800:CDS | 35.0% | |
GCAAACTATCACAAGCTAAA+GGG | - | chr8_2:15980394-15980413 | Msa1236800:CDS | 35.0% | |
CAAACTATCACAAGCTAAAG+GGG | - | chr8_2:15980395-15980414 | Msa1236800:CDS | 35.0% | |
AAACTATCACAAGCTAAAGG+GGG | - | chr8_2:15980396-15980415 | Msa1236800:CDS | 35.0% | |
! | ATTTCTGAATACATTGGCTG+TGG | + | chr8_2:15980439-15980458 | None:intergenic | 35.0% |
TCCTGGATTTCTGAATACAT+TGG | + | chr8_2:15980445-15980464 | None:intergenic | 35.0% | |
GACTGAATATCACATCATGA+GGG | + | chr8_2:15980509-15980528 | None:intergenic | 35.0% | |
TCAGAACCTTTGAACAAGTT+TGG | - | chr8_2:15980634-15980653 | Msa1236800:intron | 35.0% | |
CAGAACCTTTGAACAAGTTT+GGG | - | chr8_2:15980635-15980654 | Msa1236800:intron | 35.0% | |
! | TTCTTCCCAAACTTGTTCAA+AGG | + | chr8_2:15980643-15980662 | None:intergenic | 35.0% |
AAGTTAGCTAGTTCAGGATT+TGG | + | chr8_2:15980750-15980769 | None:intergenic | 35.0% | |
TTGATCCACAAGAAATGCAT+AGG | - | chr8_2:15980768-15980787 | Msa1236800:intron | 35.0% | |
TCAATCCTATGCATTTCTTG+TGG | + | chr8_2:15980776-15980795 | None:intergenic | 35.0% | |
AATGCATAGGATTGAGCAAT+TGG | - | chr8_2:15980781-15980800 | Msa1236800:intron | 35.0% | |
ATAGGATTGAGCAATTGGTA+TGG | - | chr8_2:15980786-15980805 | Msa1236800:intron | 35.0% | |
CCTTGAACATACTTGACATT+AGG | + | chr8_2:15980831-15980850 | None:intergenic | 35.0% | |
CCTAATGTCAAGTATGTTCA+AGG | - | chr8_2:15980828-15980847 | Msa1236800:intron | 35.0% | |
ACAACATAAGTAGCTAACTC+AGG | + | chr8_2:15980984-15981003 | None:intergenic | 35.0% | |
ATTCCTTTGACACAACTTGA+TGG | - | chr8_2:15981032-15981051 | Msa1236800:intron | 35.0% | |
TTCACATCAGTTAATCCAAC+TGG | + | chr8_2:15981077-15981096 | None:intergenic | 35.0% | |
GGATTAACTGATGTGAAGAT+TGG | - | chr8_2:15981080-15981099 | Msa1236800:intron | 35.0% | |
GAAGATTGGTGAAGATTATG+AGG | - | chr8_2:15981094-15981113 | Msa1236800:intron | 35.0% | |
TTTCCTCTTCTTAAGATGTC+AGG | - | chr8_2:15981167-15981186 | Msa1236800:CDS | 35.0% | |
TTCCTCTTCTTAAGATGTCA+GGG | - | chr8_2:15981168-15981187 | Msa1236800:CDS | 35.0% | |
ATGTCAGGGACTAATATGAT+GGG | - | chr8_2:15981182-15981201 | Msa1236800:CDS | 35.0% | |
GTAACATAACAAAGTAGCAG+TGG | + | chr8_2:15981367-15981386 | None:intergenic | 35.0% | |
!!! | TTGTTTTTGTCTAGGGTGTA+AGG | - | chr8_2:15981435-15981454 | Msa1236800:CDS | 35.0% |
TGGAAAGATTGAATGGTTAC+TGG | - | chr8_2:15981575-15981594 | Msa1236800:CDS | 35.0% | |
TGTAAGTGAGTGGACAATTA+TGG | - | chr8_2:15981636-15981655 | Msa1236800:CDS | 35.0% | |
TTTATTGTATGGGATGGGAT+TGG | - | chr8_2:15981764-15981783 | Msa1236800:intron | 35.0% | |
TTATTGTATGGGATGGGATT+GGG | - | chr8_2:15981765-15981784 | Msa1236800:intron | 35.0% | |
! | AGAGAAGAAGTGGTTACTTT+GGG | - | chr8_2:15981788-15981807 | Msa1236800:intron | 35.0% |
GGTGAGACTTACTTAATGAT+AGG | + | chr8_2:15981892-15981911 | None:intergenic | 35.0% | |
ATCTCTCTAAATGGAGGAAA+TGG | - | chr8_2:15981946-15981965 | Msa1236800:intron | 35.0% | |
!! | GTTACTTTGCCTTTTATGCT+TGG | - | chr8_2:15982001-15982020 | Msa1236800:intron | 35.0% |
ACCTTTATGGGACCAAATTT+AGG | - | chr8_2:15982031-15982050 | Msa1236800:intron | 35.0% | |
ACCTAAATTTGGTCCCATAA+AGG | + | chr8_2:15982035-15982054 | None:intergenic | 35.0% | |
GCTTATACAGATATAGGCTA+GGG | - | chr8_2:15982197-15982216 | Msa1236800:intron | 35.0% | |
CTTATACAGATATAGGCTAG+GGG | - | chr8_2:15982198-15982217 | Msa1236800:intron | 35.0% | |
TGTGTTCTTGTCAATGTTGA+TGG | + | chr8_2:15982299-15982318 | None:intergenic | 35.0% | |
TTTCTCTTCAGCTAACAACA+TGG | + | chr8_2:15982356-15982375 | None:intergenic | 35.0% | |
GTTGTTAGCTGAAGAGAAAA+TGG | - | chr8_2:15982357-15982376 | Msa1236800:intron | 35.0% | |
CAAAAGATAACATAGTGTCC+TGG | + | chr8_2:15982424-15982443 | None:intergenic | 35.0% | |
! | CAGGACACTATGTTATCTTT+TGG | - | chr8_2:15982422-15982441 | Msa1236800:intron | 35.0% |
!! | GTTATCTTTTGGGAAATCAG+TGG | - | chr8_2:15982433-15982452 | Msa1236800:intron | 35.0% |
TGATGAATGTTGCACATGTT+TGG | - | chr8_2:15982477-15982496 | Msa1236800:intron | 35.0% | |
CAGGCCTTGGATTAATCTAA+CGG | - | chr8_2:15978168-15978187 | Msa1236800:exon | 40.0% | |
! | GAACCATACTTTTGGCAAAG+GGG | - | chr8_2:15978594-15978613 | Msa1236800:CDS | 40.0% |
! | CTAATGGTTCAGAGTATCTG+TGG | - | chr8_2:15978847-15978866 | Msa1236800:intron | 40.0% |
!! | ATATGGTGTTATGACCCATG+AGG | + | chr8_2:15978969-15978988 | None:intergenic | 40.0% |
!! | TTCTTGTTGATAACAGCTGC+AGG | - | chr8_2:15979244-15979263 | Msa1236800:intron | 40.0% |
TGAAGGAGTTGTGAAGATGA+AGG | - | chr8_2:15979267-15979286 | Msa1236800:intron | 40.0% | |
GCTGAATACTTGCAGAGTTT+AGG | - | chr8_2:15979406-15979425 | Msa1236800:intron | 40.0% | |
! | TTGCAGAGTTTAGGACTCAA+TGG | - | chr8_2:15979415-15979434 | Msa1236800:intron | 40.0% |
AACTGATCCTGAAAGCTTCA+AGG | - | chr8_2:15979441-15979460 | Msa1236800:intron | 40.0% | |
CTTAAGGAGATAGCAGTGAT+TGG | + | chr8_2:15979556-15979575 | None:intergenic | 40.0% | |
CAATCACTGCTATCTCCTTA+AGG | - | chr8_2:15979554-15979573 | Msa1236800:intron | 40.0% | |
!! | TGTAGTTCTGGTACTAGTCA+AGG | - | chr8_2:15979680-15979699 | Msa1236800:intron | 40.0% |
GGTTTGATATATCTGCACTG+TGG | + | chr8_2:15979747-15979766 | None:intergenic | 40.0% | |
TGGCAAACATTGACACATGT+CGG | + | chr8_2:15979886-15979905 | None:intergenic | 40.0% | |
ATGTAACATTGTGAGTGTGG+TGG | + | chr8_2:15979906-15979925 | None:intergenic | 40.0% | |
TTTAGCTGCCTATGAAGCAT+TGG | - | chr8_2:15979983-15980002 | Msa1236800:CDS | 40.0% | |
TTGTTGACGTGTCAGTGTTT+GGG | + | chr8_2:15980009-15980028 | None:intergenic | 40.0% | |
TGTTCAATGTCTGCATGACA+CGG | + | chr8_2:15980080-15980099 | None:intergenic | 40.0% | |
GTTTCCTATCCAAAATGGCA+AGG | - | chr8_2:15980350-15980369 | Msa1236800:CDS | 40.0% | |
GCCAATGTATTCAGAAATCC+AGG | - | chr8_2:15980441-15980460 | Msa1236800:CDS | 40.0% | |
TTCATTGCATGCTTGTATCC+TGG | + | chr8_2:15980462-15980481 | None:intergenic | 40.0% | |
!! | ATGAAAGCACTTCAATCTCC+TGG | - | chr8_2:15980477-15980496 | Msa1236800:CDS | 40.0% |
GGACTGAATATCACATCATG+AGG | + | chr8_2:15980510-15980529 | None:intergenic | 40.0% | |
! | GACATAGCAGTTCTAATGGA+TGG | + | chr8_2:15980714-15980733 | None:intergenic | 40.0% |
TGGATCAAGTTAGCTAGTTC+AGG | + | chr8_2:15980756-15980775 | None:intergenic | 40.0% | |
TATGTTCAAGGGATCATGAC+TGG | - | chr8_2:15980840-15980859 | Msa1236800:intron | 40.0% | |
CCATACTCAGAAGTCAACAA+AGG | + | chr8_2:15980915-15980934 | None:intergenic | 40.0% | |
!! | CCTTTGTTGACTTCTGAGTA+TGG | - | chr8_2:15980912-15980931 | Msa1236800:intron | 40.0% |
TCTGAGTATGGTTCTTCTGA+AGG | - | chr8_2:15980924-15980943 | Msa1236800:intron | 40.0% | |
! | AGTATGGTTCTTCTGAAGGT+TGG | - | chr8_2:15980928-15980947 | Msa1236800:intron | 40.0% |
! | GTTCCATCAAGTTGTGTCAA+AGG | + | chr8_2:15981038-15981057 | None:intergenic | 40.0% |
GACACAACTTGATGGAACTA+AGG | - | chr8_2:15981040-15981059 | Msa1236800:intron | 40.0% | |
ACAACTTGATGGAACTAAGG+TGG | - | chr8_2:15981043-15981062 | Msa1236800:intron | 40.0% | |
!!! | TATTTTGGTACCTGCAGGAT+TGG | + | chr8_2:15981129-15981148 | None:intergenic | 40.0% |
GATGTCAGGGACTAATATGA+TGG | - | chr8_2:15981181-15981200 | Msa1236800:CDS | 40.0% | |
CATAACAAAGTAGCAGTGGT+TGG | + | chr8_2:15981363-15981382 | None:intergenic | 40.0% | |
AAGTGAGTGGACAATTATGG+AGG | - | chr8_2:15981639-15981658 | Msa1236800:CDS | 40.0% | |
GAGAGAAGAAGTGGTTACTT+TGG | - | chr8_2:15981787-15981806 | Msa1236800:intron | 40.0% | |
TCTAAATGGAGGAAATGGAG+AGG | - | chr8_2:15981951-15981970 | Msa1236800:intron | 40.0% | |
GGAGAGGAAAATAAATGGAG+AGG | - | chr8_2:15981967-15981986 | Msa1236800:intron | 40.0% | |
AAATGGAGAGGATCTTGACT+CGG | - | chr8_2:15981979-15981998 | Msa1236800:intron | 40.0% | |
GTCATGTCACCAAGCATAAA+AGG | + | chr8_2:15982013-15982032 | None:intergenic | 40.0% | |
! | CTTGGTGACATGACCTTTAT+GGG | - | chr8_2:15982019-15982038 | Msa1236800:intron | 40.0% |
GTGCAGGCTTATACAGATAT+AGG | - | chr8_2:15982191-15982210 | Msa1236800:intron | 40.0% | |
GGCTTATACAGATATAGGCT+AGG | - | chr8_2:15982196-15982215 | Msa1236800:intron | 40.0% | |
!! | CAATGTTGATGGTGAGCATA+AGG | + | chr8_2:15982288-15982307 | None:intergenic | 40.0% |
! | AACATAGTGTCCTGGTTCTT+TGG | + | chr8_2:15982416-15982435 | None:intergenic | 40.0% |
! | GACAAGTCTTTTGTTGATGC+TGG | - | chr8_2:15982499-15982518 | Msa1236800:intron | 40.0% |
ATGTTCCTTTCCGAACAAGT+CGG | + | chr8_2:15982570-15982589 | None:intergenic | 40.0% | |
!! | TGCAACACTTTGGTGTTTGT+AGG | + | chr8_2:15982667-15982686 | None:intergenic | 40.0% |
TAGGCTGCCATGAAATTCAG+CGG | + | chr8_2:15977984-15978003 | None:intergenic | 45.0% | |
AAATCACATGAACAGCGGCA+TGG | - | chr8_2:15978035-15978054 | Msa1236800:three_prime_UTR | 45.0% | |
CAGGCCGTTAGATTAATCCA+AGG | + | chr8_2:15978175-15978194 | None:intergenic | 45.0% | |
!! | AACGGCCTGTGTCATTTGAA+AGG | - | chr8_2:15978186-15978205 | Msa1236800:CDS | 45.0% |
ACACCCCTTTGCCAAAAGTA+TGG | + | chr8_2:15978600-15978619 | None:intergenic | 45.0% | |
AAAGACAGAACTGCACCTCA+TGG | - | chr8_2:15978951-15978970 | Msa1236800:intron | 45.0% | |
AAGACAGAACTGCACCTCAT+GGG | - | chr8_2:15978952-15978971 | Msa1236800:intron | 45.0% | |
! | TTGATAACAGCTGCAGGTGA+AGG | - | chr8_2:15979250-15979269 | Msa1236800:intron | 45.0% |
AGAGGCTAACAAAGGATGCT+GGG | - | chr8_2:15979335-15979354 | Msa1236800:intron | 45.0% | |
GGATGCTGGGAATGTTCAAA+AGG | - | chr8_2:15979348-15979367 | Msa1236800:intron | 45.0% | |
ACACATGCCTTGAAGCTTTC+AGG | + | chr8_2:15979451-15979470 | None:intergenic | 45.0% | |
CTTCAAGGCATGTGTTCCAT+TGG | - | chr8_2:15979456-15979475 | Msa1236800:intron | 45.0% | |
CCTGTTCCTAAAGGCAAAAG+AGG | + | chr8_2:15979768-15979787 | None:intergenic | 45.0% | |
!! | CCTCTTTTGCCTTTAGGAAC+AGG | - | chr8_2:15979765-15979784 | Msa1236800:intron | 45.0% |
TGTTTGGGCCAATGCTTCAT+AGG | + | chr8_2:15979994-15980013 | None:intergenic | 45.0% | |
GTTGTTGACGTGTCAGTGTT+TGG | + | chr8_2:15980010-15980029 | None:intergenic | 45.0% | |
GAACACACATGTTAGACACC+TGG | - | chr8_2:15980095-15980114 | Msa1236800:CDS | 45.0% | |
TGTTCGACATCGACATGCTT+TGG | + | chr8_2:15980239-15980258 | None:intergenic | 45.0% | |
!!! | AAGGCCTTGCCATTTTGGAT+AGG | + | chr8_2:15980357-15980376 | None:intergenic | 45.0% |
!! | AGCTTAAGGCCTTGCCATTT+TGG | + | chr8_2:15980362-15980381 | None:intergenic | 45.0% |
GCTGCTGTAGATGAAGCTTA+AGG | + | chr8_2:15980376-15980395 | None:intergenic | 45.0% | |
AAAGCAGTCCACATAAGAGG+TGG | + | chr8_2:15980557-15980576 | None:intergenic | 45.0% | |
TGCAAAGCAGTCCACATAAG+AGG | + | chr8_2:15980560-15980579 | None:intergenic | 45.0% | |
GTTAAGACACTATGCAGGAG+AGG | - | chr8_2:15980887-15980906 | Msa1236800:intron | 45.0% | |
!! | GTTGTTTTCACCAATCCTGC+AGG | - | chr8_2:15981116-15981135 | Msa1236800:intron | 45.0% |
GTCCCTGACATCTTAAGAAG+AGG | + | chr8_2:15981173-15981192 | None:intergenic | 45.0% | |
AACAAAGTAGCAGTGGTTGG+TGG | + | chr8_2:15981360-15981379 | None:intergenic | 45.0% | |
! | GCTTGGTGACATGACCTTTA+TGG | - | chr8_2:15982018-15982037 | Msa1236800:intron | 45.0% |
AGGGGATGTGGTAAAGGTTA+TGG | - | chr8_2:15982216-15982235 | Msa1236800:intron | 45.0% | |
GGGGATGTGGTAAAGGTTAT+GGG | - | chr8_2:15982217-15982236 | Msa1236800:intron | 45.0% | |
TGAGTCAGTTCAAGACACCT+AGG | - | chr8_2:15982632-15982651 | Msa1236800:intron | 45.0% | |
TTTGTAGGAGCAACACACCT+AGG | + | chr8_2:15982652-15982671 | None:intergenic | 45.0% | |
!! | GTAAAATATTTATATATATA+AGG | + | chr8_2:15982804-15982823 | None:intergenic | 5.0% |
!! | TTCTATAAAAAATATAAAAA+TGG | - | chr8_2:15982868-15982887 | Msa1236800:CDS | 5.0% |
!! | TCTATAAAAAATATAAAAAT+GGG | - | chr8_2:15982869-15982888 | Msa1236800:CDS | 5.0% |
GTGACACGTGGCATGATAAC+AGG | - | chr8_2:15978149-15978168 | Msa1236800:three_prime_UTR | 50.0% | |
GAGAGGCTAACAAAGGATGC+TGG | - | chr8_2:15979334-15979353 | Msa1236800:intron | 50.0% | |
TGTTAGACACCTGGCACATG+TGG | - | chr8_2:15980104-15980123 | Msa1236800:CDS | 50.0% | |
CGAATGTTACCACATGTGCC+AGG | + | chr8_2:15980116-15980135 | None:intergenic | 50.0% | |
AGAGGTGGCAGTAGAGTGAT+TGG | + | chr8_2:15980542-15980561 | None:intergenic | 50.0% | |
CTCTACTGCCACCTCTTATG+TGG | - | chr8_2:15980546-15980565 | Msa1236800:CDS | 50.0% | |
AGGGATCATGACTGGTGCAA+TGG | - | chr8_2:15980848-15980867 | Msa1236800:intron | 50.0% | |
GCTAACTCAGGAGCCTCTTT+AGG | + | chr8_2:15980972-15980991 | None:intergenic | 50.0% | |
! | GTCTAGGGTGTAAGGTAGAG+TGG | - | chr8_2:15981443-15981462 | Msa1236800:CDS | 50.0% |
TGGGATTGGGAGAGAAGAAG+TGG | - | chr8_2:15981778-15981797 | Msa1236800:intron | 50.0% | |
CAGATATAGGCTAGGGGATG+TGG | - | chr8_2:15982204-15982223 | Msa1236800:intron | 50.0% | |
TAGGCTAGGGGATGTGGTAA+AGG | - | chr8_2:15982210-15982229 | Msa1236800:intron | 50.0% | |
CCGAACAAGTCGGAGTTCAA+GGG | + | chr8_2:15982560-15982579 | None:intergenic | 50.0% | |
! | CCCTTGAACTCCGACTTGTT+CGG | - | chr8_2:15982557-15982576 | Msa1236800:intron | 50.0% |
TCCGAACAAGTCGGAGTTCA+AGG | + | chr8_2:15982561-15982580 | None:intergenic | 50.0% | |
! | GAACTCCGACTTGTTCGGAA+AGG | - | chr8_2:15982562-15982581 | Msa1236800:intron | 50.0% |
ATGGCAACGACGGTGGTGAA+CGG | - | chr8_2:15978054-15978073 | Msa1236800:three_prime_UTR | 55.0% | |
CGTGGCATGATAACAGGCCT+TGG | - | chr8_2:15978155-15978174 | Msa1236800:three_prime_UTR | 55.0% | |
TCCATTCTGCTGGGTCCAGT+TGG | - | chr8_2:15978923-15978942 | Msa1236800:intron | 55.0% | |
TCCAACTGGACCCAGCAGAA+TGG | + | chr8_2:15978927-15978946 | None:intergenic | 55.0% | |
CACATGTCGGACACCGTCAA+AGG | + | chr8_2:15979873-15979892 | None:intergenic | 55.0% | |
CTGCATGACACGGACACATG+TGG | + | chr8_2:15980070-15980089 | None:intergenic | 55.0% | |
ACATCATGAGGGCTGCATCC+AGG | + | chr8_2:15980498-15980517 | None:intergenic | 55.0% | |
AAGGTGGAGCTTGAGCCAGT+TGG | - | chr8_2:15981059-15981078 | Msa1236800:intron | 55.0% | |
GAACAGCGGCATGGCAACGA+CGG | - | chr8_2:15978044-15978063 | Msa1236800:three_prime_UTR | 60.0% | |
TGGCAACGACGGTGGTGAAC+GGG | - | chr8_2:15978055-15978074 | Msa1236800:three_prime_UTR | 60.0% | |
CAACGACGGTGGTGAACGGG+TGG | - | chr8_2:15978058-15978077 | Msa1236800:three_prime_UTR | 65.0% | |
CAGCGGCATGGCAACGACGG+TGG | - | chr8_2:15978047-15978066 | Msa1236800:three_prime_UTR | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 15977978 | 15982942 | 15977978 | ID=Msa1236800;Name=Msa1236800 |
chr8_2 | mRNA | 15977978 | 15982942 | 15977978 | ID=Msa1236800-mRNA-1;Parent=Msa1236800;Name=Msa1236800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.75|0.8|0.8|1|1|5|204|613 |
chr8_2 | exon | 15977978 | 15978723 | 15977978 | ID=Msa1236800-mRNA-1:exon:5960;Parent=Msa1236800-mRNA-1 |
chr8_2 | exon | 15979783 | 15980573 | 15979783 | ID=Msa1236800-mRNA-1:exon:5959;Parent=Msa1236800-mRNA-1 |
chr8_2 | exon | 15981134 | 15981235 | 15981134 | ID=Msa1236800-mRNA-1:exon:5958;Parent=Msa1236800-mRNA-1 |
chr8_2 | exon | 15981345 | 15981660 | 15981345 | ID=Msa1236800-mRNA-1:exon:5957;Parent=Msa1236800-mRNA-1 |
chr8_2 | exon | 15982852 | 15982942 | 15982852 | ID=Msa1236800-mRNA-1:exon:5956;Parent=Msa1236800-mRNA-1 |
chr8_2 | CDS | 15982852 | 15982942 | 15982852 | ID=Msa1236800-mRNA-1:cds;Parent=Msa1236800-mRNA-1 |
chr8_2 | CDS | 15981345 | 15981660 | 15981345 | ID=Msa1236800-mRNA-1:cds;Parent=Msa1236800-mRNA-1 |
chr8_2 | CDS | 15981134 | 15981235 | 15981134 | ID=Msa1236800-mRNA-1:cds;Parent=Msa1236800-mRNA-1 |
chr8_2 | CDS | 15979783 | 15980573 | 15979783 | ID=Msa1236800-mRNA-1:cds;Parent=Msa1236800-mRNA-1 |
chr8_2 | CDS | 15978182 | 15978723 | 15978182 | ID=Msa1236800-mRNA-1:cds;Parent=Msa1236800-mRNA-1 |
chr8_2 | three_prime_UTR | 15977978 | 15978181 | 15977978 | ID=Msa1236800-mRNA-1:three_prime_utr;Parent=Msa1236800-mRNA-1 |
Gene Sequence |
Protein sequence |