Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1238990 | XP_024628144.1 | 96.629 | 178 | 5 | 1 | 1 | 177 | 1 | 178 | 7.69e-123 | 353 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1238990 | sp|Q9FL07|ATL46_ARATH | 33.333 | 129 | 63 | 3 | 58 | 169 | 101 | 223 | 4.89e-16 | 77.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1238990 | A0A396GI92 | 96.629 | 178 | 5 | 1 | 1 | 177 | 1 | 178 | 3.67e-123 | 353 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1185040 | Msa1238990 | 0.803667 | 3.124316e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1238990 | MtrunA17_Chr8g0350741 | 96.629 | 178 | 5 | 1 | 1 | 177 | 1 | 178 | 7.07e-127 | 353 |
Msa1238990 | MtrunA17_Chr7g0246761 | 70.455 | 176 | 46 | 3 | 1 | 171 | 1 | 175 | 1.97e-85 | 249 |
Msa1238990 | MtrunA17_Chr1g0198201 | 41.497 | 147 | 84 | 2 | 1 | 146 | 1 | 146 | 2.89e-37 | 128 |
Msa1238990 | MtrunA17_Chr3g0118071 | 33.884 | 121 | 70 | 3 | 17 | 131 | 30 | 146 | 1.31e-18 | 79.7 |
Msa1238990 | MtrunA17_Chr4g0013561 | 53.125 | 64 | 28 | 2 | 71 | 134 | 94 | 155 | 3.80e-18 | 78.6 |
Msa1238990 | MtrunA17_Chr3g0118061 | 34.454 | 119 | 68 | 3 | 22 | 134 | 35 | 149 | 8.98e-18 | 77.4 |
Msa1238990 | MtrunA17_Chr6g0486651 | 31.429 | 175 | 90 | 8 | 8 | 170 | 43 | 199 | 4.75e-17 | 77.4 |
Msa1238990 | MtrunA17_Chr1g0184631 | 39.326 | 89 | 48 | 1 | 88 | 176 | 96 | 178 | 5.44e-17 | 74.3 |
Msa1238990 | MtrunA17_Chr7g0274711 | 32.934 | 167 | 96 | 4 | 15 | 176 | 22 | 177 | 8.04e-17 | 73.9 |
Msa1238990 | MtrunA17_Chr1g0197021 | 33.582 | 134 | 77 | 4 | 4 | 131 | 14 | 141 | 8.31e-17 | 73.6 |
Msa1238990 | MtrunA17_Chr6g0451161 | 44.737 | 76 | 41 | 1 | 59 | 134 | 130 | 204 | 1.01e-16 | 76.6 |
Msa1238990 | MtrunA17_Chr8g0381731 | 39.362 | 94 | 48 | 2 | 84 | 177 | 169 | 253 | 3.23e-16 | 74.3 |
Msa1238990 | MtrunA17_Chr1g0167811 | 29.293 | 198 | 105 | 10 | 3 | 176 | 27 | 213 | 5.19e-16 | 73.9 |
Msa1238990 | MtrunA17_Chr8g0364881 | 32.090 | 134 | 83 | 3 | 8 | 135 | 9 | 140 | 6.65e-16 | 73.9 |
Msa1238990 | MtrunA17_Chr8g0383931 | 34.579 | 107 | 62 | 2 | 72 | 170 | 124 | 230 | 1.68e-15 | 71.6 |
Msa1238990 | MtrunA17_Chr5g0413841 | 40.260 | 77 | 45 | 1 | 59 | 135 | 113 | 188 | 2.38e-15 | 72.4 |
Msa1238990 | MtrunA17_Chr3g0128771 | 32.520 | 123 | 75 | 3 | 20 | 134 | 42 | 164 | 2.55e-15 | 70.1 |
Msa1238990 | MtrunA17_Chr5g0411081 | 30.657 | 137 | 84 | 4 | 8 | 134 | 58 | 193 | 2.60e-15 | 72.4 |
Msa1238990 | MtrunA17_Chr2g0325141 | 28.358 | 134 | 84 | 3 | 8 | 131 | 2 | 133 | 2.60e-15 | 69.3 |
Msa1238990 | MtrunA17_Chr1g0197031 | 31.579 | 133 | 84 | 3 | 4 | 131 | 14 | 144 | 2.83e-15 | 69.7 |
Msa1238990 | MtrunA17_Chr4g0067591 | 36.765 | 68 | 40 | 1 | 64 | 131 | 82 | 146 | 3.55e-15 | 71.2 |
Msa1238990 | MtrunA17_Chr7g0248831 | 44.928 | 69 | 37 | 1 | 64 | 131 | 82 | 150 | 4.15e-15 | 69.3 |
Msa1238990 | MtrunA17_Chr8g0383901 | 37.209 | 86 | 51 | 1 | 72 | 154 | 114 | 199 | 4.85e-15 | 70.1 |
Msa1238990 | MtrunA17_Chr5g0427431 | 33.000 | 100 | 63 | 2 | 64 | 163 | 136 | 231 | 5.76e-15 | 71.6 |
Msa1238990 | MtrunA17_Chr8g0383881 | 36.471 | 85 | 54 | 0 | 56 | 140 | 97 | 181 | 6.92e-15 | 69.7 |
Msa1238990 | MtrunA17_Chr8g0366561 | 30.178 | 169 | 106 | 7 | 8 | 169 | 58 | 221 | 7.07e-15 | 71.2 |
Msa1238990 | MtrunA17_Chr2g0327791 | 38.750 | 80 | 48 | 1 | 59 | 137 | 104 | 183 | 7.71e-15 | 69.7 |
Msa1238990 | MtrunA17_Chr1g0184171 | 36.620 | 71 | 45 | 0 | 64 | 134 | 105 | 175 | 9.33e-15 | 70.9 |
Msa1238990 | MtrunA17_Chr5g0409211 | 60.465 | 43 | 17 | 0 | 89 | 131 | 94 | 136 | 1.03e-14 | 68.6 |
Msa1238990 | MtrunA17_Chr2g0325161 | 38.356 | 73 | 40 | 1 | 64 | 131 | 93 | 165 | 1.15e-14 | 69.3 |
Msa1238990 | MtrunA17_Chr4g0030831 | 43.478 | 69 | 38 | 1 | 64 | 131 | 86 | 154 | 1.25e-14 | 68.2 |
Msa1238990 | MtrunA17_Chr1g0186661 | 37.838 | 74 | 41 | 1 | 66 | 134 | 103 | 176 | 1.32e-14 | 70.5 |
Msa1238990 | MtrunA17_Chr7g0276591 | 41.096 | 73 | 37 | 2 | 64 | 134 | 78 | 146 | 1.43e-14 | 69.7 |
Msa1238990 | MtrunA17_Chr7g0248841 | 41.667 | 72 | 39 | 1 | 66 | 134 | 78 | 149 | 1.49e-14 | 67.8 |
Msa1238990 | MtrunA17_Chr3g0144241 | 44.615 | 65 | 34 | 1 | 70 | 134 | 87 | 149 | 2.23e-14 | 67.8 |
Msa1238990 | MtrunA17_Chr8g0345361 | 35.185 | 108 | 54 | 3 | 64 | 171 | 94 | 185 | 2.31e-14 | 68.9 |
Msa1238990 | MtrunA17_Chr3g0105441 | 53.191 | 47 | 22 | 0 | 88 | 134 | 131 | 177 | 2.32e-14 | 68.9 |
Msa1238990 | MtrunA17_Chr5g0426781 | 52.083 | 48 | 23 | 0 | 84 | 131 | 149 | 196 | 2.61e-14 | 69.7 |
Msa1238990 | MtrunA17_Chr7g0273051 | 38.356 | 73 | 43 | 1 | 64 | 134 | 93 | 165 | 2.78e-14 | 69.7 |
Msa1238990 | MtrunA17_Chr8g0383861 | 36.471 | 85 | 54 | 0 | 56 | 140 | 107 | 191 | 3.37e-14 | 68.2 |
Msa1238990 | MtrunA17_Chr6g0470751 | 40.845 | 71 | 41 | 1 | 88 | 157 | 125 | 195 | 4.11e-14 | 68.9 |
Msa1238990 | MtrunA17_Chr7g0261091 | 33.784 | 74 | 46 | 1 | 64 | 134 | 72 | 145 | 4.14e-14 | 68.9 |
Msa1238990 | MtrunA17_Chr1g0203541 | 37.349 | 83 | 42 | 2 | 64 | 139 | 107 | 186 | 4.90e-14 | 67.4 |
Msa1238990 | MtrunA17_Chr5g0407431 | 32.609 | 92 | 52 | 2 | 53 | 134 | 59 | 150 | 6.32e-14 | 67.0 |
Msa1238990 | MtrunA17_Chr8g0383871 | 34.884 | 86 | 53 | 1 | 68 | 150 | 118 | 203 | 8.14e-14 | 67.0 |
Msa1238990 | MtrunA17_Chr8g0383921 | 34.884 | 86 | 53 | 1 | 68 | 150 | 117 | 202 | 9.27e-14 | 66.6 |
Msa1238990 | MtrunA17_Chr7g0274741 | 52.273 | 44 | 21 | 0 | 88 | 131 | 98 | 141 | 9.27e-14 | 65.9 |
Msa1238990 | MtrunA17_Chr1g0191601 | 43.243 | 74 | 41 | 1 | 88 | 160 | 126 | 199 | 9.69e-14 | 68.2 |
Msa1238990 | MtrunA17_Chr2g0279431 | 49.057 | 53 | 27 | 0 | 84 | 136 | 156 | 208 | 1.02e-13 | 68.2 |
Msa1238990 | MtrunA17_Chr4g0059281 | 35.526 | 76 | 48 | 1 | 59 | 134 | 103 | 177 | 1.09e-13 | 67.4 |
Msa1238990 | MtrunA17_Chr8g0369571 | 41.026 | 78 | 36 | 2 | 86 | 163 | 87 | 154 | 1.19e-13 | 65.5 |
Msa1238990 | MtrunA17_Chr3g0132491 | 53.191 | 47 | 22 | 0 | 88 | 134 | 135 | 181 | 1.56e-13 | 67.4 |
Msa1238990 | MtrunA17_Chr3g0113811 | 33.582 | 134 | 74 | 5 | 7 | 134 | 27 | 151 | 1.98e-13 | 65.1 |
Msa1238990 | MtrunA17_Chr8g0383941 | 35.514 | 107 | 62 | 2 | 68 | 167 | 113 | 219 | 2.07e-13 | 65.9 |
Msa1238990 | MtrunA17_Chr5g0430781 | 40.000 | 80 | 42 | 2 | 52 | 131 | 79 | 152 | 2.73e-13 | 65.5 |
Msa1238990 | MtrunA17_Chr7g0275601 | 62.791 | 43 | 16 | 0 | 89 | 131 | 108 | 150 | 2.79e-13 | 64.3 |
Msa1238990 | MtrunA17_Chr5g0396601 | 62.791 | 43 | 16 | 0 | 89 | 131 | 350 | 392 | 3.20e-13 | 66.6 |
Msa1238990 | MtrunA17_Chr5g0426881 | 53.191 | 47 | 22 | 0 | 88 | 134 | 142 | 188 | 3.48e-13 | 66.6 |
Msa1238990 | MtrunA17_Chr3g0126931 | 41.096 | 73 | 40 | 2 | 88 | 159 | 126 | 196 | 3.54e-13 | 66.2 |
Msa1238990 | MtrunA17_Chr2g0295571 | 32.927 | 82 | 44 | 2 | 68 | 139 | 99 | 179 | 4.31e-13 | 65.9 |
Msa1238990 | MtrunA17_Chr1g0177041 | 37.879 | 66 | 39 | 1 | 68 | 131 | 80 | 145 | 4.59e-13 | 63.9 |
Msa1238990 | MtrunA17_Chr5g0409201 | 55.814 | 43 | 19 | 0 | 89 | 131 | 93 | 135 | 4.78e-13 | 63.5 |
Msa1238990 | MtrunA17_Chr4g0050041 | 34.568 | 81 | 50 | 2 | 53 | 131 | 115 | 194 | 5.05e-13 | 65.9 |
Msa1238990 | MtrunA17_Chr4g0073141 | 30.000 | 100 | 69 | 1 | 59 | 157 | 114 | 213 | 5.62e-13 | 66.2 |
Msa1238990 | MtrunA17_Chr3g0120011 | 41.176 | 68 | 38 | 1 | 67 | 134 | 99 | 164 | 5.63e-13 | 64.3 |
Msa1238990 | MtrunA17_Chr5g0426871 | 52.174 | 46 | 22 | 0 | 89 | 134 | 137 | 182 | 6.72e-13 | 65.9 |
Msa1238990 | MtrunA17_Chr1g0197011 | 56.410 | 39 | 17 | 0 | 93 | 131 | 111 | 149 | 7.07e-13 | 63.2 |
Msa1238990 | MtrunA17_Chr8g0336881 | 33.333 | 72 | 46 | 1 | 65 | 134 | 79 | 150 | 9.35e-13 | 65.1 |
Msa1238990 | MtrunA17_Chr8g0388231 | 32.031 | 128 | 72 | 2 | 13 | 131 | 258 | 379 | 1.13e-12 | 65.1 |
Msa1238990 | MtrunA17_Chr7g0244851 | 45.455 | 55 | 30 | 0 | 80 | 134 | 98 | 152 | 1.22e-12 | 62.8 |
Msa1238990 | MtrunA17_Chr8g0348151 | 55.556 | 45 | 20 | 0 | 87 | 131 | 112 | 156 | 1.59e-12 | 63.2 |
Msa1238990 | MtrunA17_Chr8g0388201 | 58.140 | 43 | 18 | 0 | 89 | 131 | 347 | 389 | 1.64e-12 | 64.7 |
Msa1238990 | MtrunA17_Chr3g0133001 | 36.364 | 66 | 41 | 1 | 66 | 131 | 134 | 198 | 1.68e-12 | 64.7 |
Msa1238990 | MtrunA17_Chr3g0118101 | 47.917 | 48 | 25 | 0 | 88 | 135 | 113 | 160 | 1.95e-12 | 62.4 |
Msa1238990 | MtrunA17_Chr3g0143301 | 29.268 | 123 | 64 | 4 | 15 | 134 | 14 | 116 | 1.98e-12 | 61.2 |
Msa1238990 | MtrunA17_Chr5g0396611 | 60.465 | 43 | 17 | 0 | 89 | 131 | 340 | 382 | 2.26e-12 | 64.3 |
Msa1238990 | MtrunA17_Chr1g0196991 | 53.333 | 45 | 21 | 0 | 93 | 137 | 120 | 164 | 2.72e-12 | 61.6 |
Msa1238990 | MtrunA17_Chr7g0274721 | 39.062 | 64 | 37 | 1 | 68 | 131 | 74 | 135 | 3.59e-12 | 61.6 |
Msa1238990 | MtrunA17_Chr8g0370171 | 46.667 | 45 | 24 | 0 | 87 | 131 | 96 | 140 | 3.82e-12 | 62.0 |
Msa1238990 | MtrunA17_Chr8g0347461 | 37.681 | 69 | 41 | 1 | 68 | 134 | 117 | 185 | 3.91e-12 | 63.2 |
Msa1238990 | MtrunA17_Chr5g0444141 | 53.488 | 43 | 20 | 0 | 89 | 131 | 220 | 262 | 4.16e-12 | 62.8 |
Msa1238990 | MtrunA17_Chr8g0347101 | 62.791 | 43 | 16 | 0 | 89 | 131 | 314 | 356 | 4.35e-12 | 63.2 |
Msa1238990 | MtrunA17_Chr4g0027761 | 39.130 | 69 | 38 | 1 | 66 | 134 | 104 | 168 | 4.54e-12 | 61.6 |
Msa1238990 | MtrunA17_Chr5g0396591 | 58.140 | 43 | 18 | 0 | 89 | 131 | 240 | 282 | 4.91e-12 | 62.8 |
Msa1238990 | MtrunA17_Chr3g0129671 | 44.444 | 54 | 30 | 0 | 87 | 140 | 134 | 187 | 5.26e-12 | 62.0 |
Msa1238990 | MtrunA17_Chr3g0081611 | 52.273 | 44 | 21 | 0 | 88 | 131 | 107 | 150 | 6.47e-12 | 60.8 |
Msa1238990 | MtrunA17_Chr5g0444161 | 48.837 | 43 | 22 | 0 | 89 | 131 | 185 | 227 | 7.09e-12 | 61.6 |
Msa1238990 | MtrunA17_Chr7g0274731 | 48.837 | 43 | 22 | 0 | 89 | 131 | 114 | 156 | 8.31e-12 | 60.8 |
Msa1238990 | MtrunA17_Chr5g0437361 | 39.344 | 61 | 37 | 0 | 74 | 134 | 88 | 148 | 1.09e-11 | 60.1 |
Msa1238990 | MtrunA17_Chr3g0118091 | 50.000 | 44 | 22 | 0 | 88 | 131 | 66 | 109 | 1.47e-11 | 58.9 |
Msa1238990 | MtrunA17_Chr2g0301871 | 45.455 | 44 | 24 | 0 | 88 | 131 | 82 | 125 | 1.58e-11 | 61.2 |
Msa1238990 | MtrunA17_Chr1g0157091 | 48.936 | 47 | 24 | 0 | 88 | 134 | 70 | 116 | 1.70e-11 | 58.9 |
Msa1238990 | MtrunA17_Chr8g0366521 | 29.231 | 130 | 80 | 4 | 11 | 134 | 28 | 151 | 2.65e-11 | 60.8 |
Msa1238990 | MtrunA17_Chr3g0123641 | 35.366 | 82 | 51 | 1 | 88 | 167 | 74 | 155 | 2.73e-11 | 60.1 |
Msa1238990 | MtrunA17_Chr5g0406031 | 25.000 | 124 | 78 | 3 | 21 | 131 | 110 | 231 | 3.87e-11 | 59.7 |
Msa1238990 | MtrunA17_Chr4g0060981 | 51.111 | 45 | 22 | 0 | 87 | 131 | 172 | 216 | 4.29e-11 | 59.3 |
Msa1238990 | MtrunA17_Chr3g0123631 | 35.526 | 76 | 47 | 1 | 88 | 161 | 74 | 149 | 5.97e-11 | 58.5 |
Msa1238990 | MtrunA17_Chr2g0297011 | 39.062 | 64 | 38 | 1 | 68 | 131 | 82 | 144 | 7.36e-11 | 57.8 |
Msa1238990 | MtrunA17_Chr5g0433861 | 29.771 | 131 | 78 | 4 | 11 | 134 | 28 | 151 | 7.47e-11 | 59.7 |
Msa1238990 | MtrunA17_Chr2g0317671 | 43.478 | 46 | 26 | 0 | 86 | 131 | 156 | 201 | 7.72e-11 | 58.5 |
Msa1238990 | MtrunA17_Chr3g0117821 | 40.000 | 50 | 30 | 0 | 87 | 136 | 83 | 132 | 8.85e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1238990 | AT5G40250.1 | 33.333 | 129 | 63 | 3 | 58 | 169 | 101 | 223 | 4.97e-17 | 77.8 |
Msa1238990 | AT4G10160.1 | 52.632 | 57 | 26 | 1 | 78 | 134 | 87 | 142 | 7.03e-17 | 75.5 |
Msa1238990 | AT3G16720.1 | 42.647 | 68 | 37 | 1 | 64 | 131 | 96 | 161 | 1.19e-16 | 76.3 |
Msa1238990 | AT4G10150.1 | 56.250 | 48 | 21 | 0 | 87 | 134 | 109 | 156 | 1.52e-16 | 74.7 |
Msa1238990 | AT5G57750.1 | 28.689 | 122 | 87 | 0 | 55 | 176 | 88 | 209 | 1.70e-16 | 74.3 |
Msa1238990 | AT3G48030.2 | 30.814 | 172 | 102 | 6 | 3 | 160 | 35 | 203 | 2.87e-16 | 74.7 |
Msa1238990 | AT3G48030.1 | 30.128 | 156 | 93 | 5 | 19 | 160 | 128 | 281 | 3.82e-16 | 75.1 |
Msa1238990 | AT4G15975.1 | 31.193 | 109 | 64 | 2 | 65 | 173 | 54 | 151 | 9.93e-16 | 72.8 |
Msa1238990 | AT1G20823.1 | 29.268 | 123 | 82 | 1 | 17 | 134 | 34 | 156 | 1.11e-15 | 71.6 |
Msa1238990 | AT1G72220.1 | 28.378 | 148 | 99 | 4 | 8 | 149 | 93 | 239 | 1.11e-15 | 73.9 |
Msa1238990 | AT4G09110.1 | 51.667 | 60 | 29 | 0 | 88 | 147 | 122 | 181 | 1.64e-15 | 72.8 |
Msa1238990 | AT1G33480.1 | 46.875 | 64 | 32 | 2 | 71 | 134 | 84 | 145 | 1.83e-15 | 72.4 |
Msa1238990 | AT3G14320.1 | 30.303 | 132 | 66 | 3 | 64 | 171 | 65 | 194 | 2.63e-15 | 70.9 |
Msa1238990 | AT2G35910.1 | 65.116 | 43 | 15 | 0 | 89 | 131 | 147 | 189 | 4.52e-15 | 70.5 |
Msa1238990 | AT5G01880.1 | 50.980 | 51 | 25 | 0 | 84 | 134 | 100 | 150 | 5.11e-15 | 69.3 |
Msa1238990 | AT4G17905.1 | 49.180 | 61 | 30 | 1 | 74 | 134 | 141 | 200 | 6.37e-15 | 71.2 |
Msa1238990 | AT1G22500.1 | 44.156 | 77 | 36 | 2 | 65 | 140 | 99 | 169 | 6.91e-15 | 71.6 |
Msa1238990 | AT3G03550.1 | 38.636 | 88 | 50 | 2 | 84 | 170 | 154 | 238 | 8.42e-15 | 71.2 |
Msa1238990 | AT5G05280.1 | 43.750 | 64 | 34 | 1 | 71 | 134 | 97 | 158 | 8.49e-15 | 68.9 |
Msa1238990 | AT4G17905.2 | 49.180 | 61 | 30 | 1 | 74 | 134 | 167 | 226 | 9.19e-15 | 71.2 |
Msa1238990 | AT1G35330.1 | 57.447 | 47 | 20 | 0 | 88 | 134 | 128 | 174 | 1.01e-14 | 70.9 |
Msa1238990 | AT2G46160.1 | 41.333 | 75 | 37 | 1 | 64 | 131 | 106 | 180 | 1.39e-14 | 69.3 |
Msa1238990 | AT2G46160.2 | 41.333 | 75 | 37 | 1 | 64 | 131 | 106 | 180 | 1.39e-14 | 69.3 |
Msa1238990 | AT3G10910.1 | 46.154 | 52 | 28 | 0 | 83 | 134 | 108 | 159 | 1.84e-14 | 68.2 |
Msa1238990 | AT2G34990.1 | 32.308 | 130 | 81 | 4 | 8 | 134 | 16 | 141 | 2.21e-14 | 69.7 |
Msa1238990 | AT2G34990.2 | 32.308 | 130 | 81 | 4 | 8 | 134 | 38 | 163 | 2.22e-14 | 70.1 |
Msa1238990 | AT2G42360.1 | 34.234 | 111 | 66 | 2 | 21 | 131 | 47 | 150 | 2.45e-14 | 68.9 |
Msa1238990 | AT4G09100.1 | 54.545 | 44 | 20 | 0 | 88 | 131 | 84 | 127 | 2.62e-14 | 66.6 |
Msa1238990 | AT2G27940.1 | 35.443 | 79 | 49 | 1 | 53 | 131 | 106 | 182 | 3.34e-14 | 68.6 |
Msa1238990 | AT1G72200.1 | 42.500 | 80 | 39 | 2 | 65 | 143 | 125 | 198 | 3.75e-14 | 69.7 |
Msa1238990 | AT4G33565.1 | 40.299 | 67 | 39 | 1 | 65 | 131 | 194 | 259 | 4.04e-14 | 69.3 |
Msa1238990 | AT1G23980.1 | 29.730 | 148 | 87 | 5 | 6 | 137 | 46 | 192 | 4.32e-14 | 69.3 |
Msa1238990 | AT2G42350.1 | 40.506 | 79 | 43 | 2 | 53 | 131 | 68 | 142 | 4.79e-14 | 67.8 |
Msa1238990 | AT2G20030.1 | 35.354 | 99 | 60 | 3 | 68 | 165 | 104 | 199 | 4.91e-14 | 69.3 |
Msa1238990 | AT4G09120.1 | 57.447 | 47 | 20 | 0 | 88 | 134 | 122 | 168 | 6.23e-14 | 68.9 |
Msa1238990 | AT1G76410.1 | 41.538 | 65 | 38 | 0 | 70 | 134 | 85 | 149 | 6.83e-14 | 66.6 |
Msa1238990 | AT5G17600.1 | 34.524 | 84 | 54 | 1 | 54 | 137 | 108 | 190 | 6.86e-14 | 68.9 |
Msa1238990 | AT1G04360.1 | 39.726 | 73 | 38 | 1 | 68 | 134 | 107 | 179 | 1.10e-13 | 68.2 |
Msa1238990 | AT5G43420.1 | 34.831 | 89 | 45 | 2 | 56 | 131 | 92 | 180 | 1.32e-13 | 68.2 |
Msa1238990 | AT2G17450.1 | 49.020 | 51 | 26 | 0 | 87 | 137 | 100 | 150 | 1.40e-13 | 65.9 |
Msa1238990 | AT3G05200.1 | 49.153 | 59 | 29 | 1 | 88 | 145 | 127 | 185 | 1.74e-13 | 67.8 |
Msa1238990 | AT5G10380.1 | 46.429 | 56 | 30 | 0 | 87 | 142 | 133 | 188 | 1.94e-13 | 67.0 |
Msa1238990 | AT5G58580.1 | 35.366 | 82 | 52 | 1 | 64 | 144 | 113 | 194 | 2.12e-13 | 67.0 |
Msa1238990 | AT2G35420.1 | 35.200 | 125 | 68 | 6 | 56 | 171 | 73 | 193 | 2.29e-13 | 66.6 |
Msa1238990 | AT5G05810.1 | 31.429 | 105 | 58 | 3 | 66 | 163 | 124 | 221 | 2.62e-13 | 67.4 |
Msa1238990 | AT4G30400.1 | 35.616 | 73 | 47 | 0 | 59 | 131 | 104 | 176 | 2.85e-13 | 67.4 |
Msa1238990 | AT2G18650.1 | 34.211 | 76 | 50 | 0 | 59 | 134 | 96 | 171 | 3.20e-13 | 67.0 |
Msa1238990 | AT5G47610.1 | 29.412 | 119 | 76 | 3 | 18 | 134 | 40 | 152 | 3.79e-13 | 64.3 |
Msa1238990 | AT4G28890.1 | 40.625 | 64 | 37 | 1 | 68 | 131 | 103 | 165 | 3.84e-13 | 67.0 |
Msa1238990 | AT4G09130.1 | 57.447 | 47 | 20 | 0 | 88 | 134 | 119 | 165 | 3.93e-13 | 66.6 |
Msa1238990 | AT4G30370.1 | 32.184 | 87 | 58 | 1 | 59 | 145 | 86 | 171 | 5.00e-13 | 64.3 |
Msa1238990 | AT4G35480.1 | 50.980 | 51 | 25 | 0 | 87 | 137 | 111 | 161 | 5.62e-13 | 64.7 |
Msa1238990 | AT3G18773.1 | 32.727 | 110 | 71 | 1 | 31 | 140 | 75 | 181 | 7.18e-13 | 64.7 |
Msa1238990 | AT3G61550.1 | 31.481 | 108 | 64 | 1 | 34 | 131 | 71 | 178 | 7.20e-13 | 64.7 |
Msa1238990 | AT1G72310.1 | 40.299 | 67 | 38 | 1 | 68 | 134 | 108 | 172 | 8.22e-13 | 65.5 |
Msa1238990 | AT4G40070.1 | 38.356 | 73 | 43 | 1 | 64 | 134 | 97 | 169 | 9.11e-13 | 65.5 |
Msa1238990 | AT2G18670.1 | 38.462 | 65 | 40 | 0 | 67 | 131 | 88 | 152 | 9.64e-13 | 63.5 |
Msa1238990 | AT1G74410.1 | 48.077 | 52 | 27 | 0 | 85 | 136 | 172 | 223 | 1.03e-12 | 64.3 |
Msa1238990 | AT3G20395.1 | 45.902 | 61 | 30 | 1 | 71 | 131 | 156 | 213 | 1.09e-12 | 64.3 |
Msa1238990 | AT2G47560.1 | 53.488 | 43 | 20 | 0 | 89 | 131 | 108 | 150 | 1.11e-12 | 64.3 |
Msa1238990 | AT5G06490.1 | 53.488 | 43 | 20 | 0 | 89 | 131 | 129 | 171 | 1.22e-12 | 63.5 |
Msa1238990 | AT1G53820.1 | 41.818 | 55 | 32 | 0 | 88 | 142 | 119 | 173 | 1.25e-12 | 65.1 |
Msa1238990 | AT3G62690.1 | 50.000 | 44 | 22 | 0 | 88 | 131 | 112 | 155 | 1.92e-12 | 63.9 |
Msa1238990 | AT5G53110.1 | 62.791 | 43 | 16 | 0 | 89 | 131 | 330 | 372 | 2.46e-12 | 64.3 |
Msa1238990 | AT3G18930.2 | 45.283 | 53 | 29 | 0 | 82 | 134 | 149 | 201 | 2.92e-12 | 64.3 |
Msa1238990 | AT3G18930.3 | 45.283 | 53 | 29 | 0 | 82 | 134 | 149 | 201 | 2.92e-12 | 64.3 |
Msa1238990 | AT3G18930.1 | 45.283 | 53 | 29 | 0 | 82 | 134 | 149 | 201 | 2.92e-12 | 64.3 |
Msa1238990 | AT5G27420.1 | 46.429 | 56 | 30 | 0 | 88 | 143 | 123 | 178 | 3.19e-12 | 63.9 |
Msa1238990 | AT3G19140.1 | 36.765 | 68 | 41 | 1 | 64 | 131 | 56 | 121 | 3.22e-12 | 61.2 |
Msa1238990 | AT2G35000.1 | 48.936 | 47 | 24 | 0 | 88 | 134 | 134 | 180 | 3.66e-12 | 63.9 |
Msa1238990 | AT2G46493.1 | 55.814 | 43 | 19 | 0 | 89 | 131 | 138 | 180 | 3.88e-12 | 62.0 |
Msa1238990 | AT1G49220.1 | 47.170 | 53 | 28 | 0 | 88 | 140 | 134 | 186 | 9.76e-12 | 62.0 |
Msa1238990 | AT1G49230.1 | 46.296 | 54 | 29 | 0 | 87 | 140 | 129 | 182 | 1.04e-11 | 61.6 |
Msa1238990 | AT1G28040.1 | 58.140 | 43 | 18 | 0 | 89 | 131 | 253 | 295 | 1.84e-11 | 61.6 |
Msa1238990 | AT1G49210.1 | 47.170 | 53 | 28 | 0 | 88 | 140 | 134 | 186 | 1.89e-11 | 60.8 |
Msa1238990 | AT3G60220.1 | 32.955 | 88 | 54 | 2 | 52 | 134 | 75 | 162 | 2.11e-11 | 61.6 |
Msa1238990 | AT5G66070.5 | 25.424 | 118 | 81 | 2 | 21 | 131 | 101 | 218 | 2.23e-11 | 60.5 |
Msa1238990 | AT5G66070.1 | 25.424 | 118 | 81 | 2 | 21 | 131 | 101 | 218 | 2.23e-11 | 60.5 |
Msa1238990 | AT4G26580.1 | 55.102 | 49 | 21 | 1 | 88 | 136 | 288 | 335 | 2.67e-11 | 61.2 |
Msa1238990 | AT4G26580.2 | 55.102 | 49 | 21 | 1 | 88 | 136 | 288 | 335 | 2.67e-11 | 61.2 |
Msa1238990 | AT2G25410.1 | 58.140 | 43 | 18 | 0 | 89 | 131 | 327 | 369 | 2.91e-11 | 61.2 |
Msa1238990 | AT5G07040.1 | 53.488 | 43 | 20 | 0 | 89 | 131 | 94 | 136 | 3.02e-11 | 59.3 |
Msa1238990 | AT1G49200.1 | 45.283 | 53 | 29 | 0 | 88 | 140 | 135 | 187 | 3.53e-11 | 60.1 |
Msa1238990 | AT3G11110.1 | 33.803 | 71 | 47 | 0 | 64 | 134 | 82 | 152 | 3.69e-11 | 58.9 |
Msa1238990 | AT5G66070.2 | 44.681 | 47 | 26 | 0 | 85 | 131 | 196 | 242 | 3.94e-11 | 60.1 |
Msa1238990 | AT2G46494.1 | 55.814 | 43 | 19 | 0 | 89 | 131 | 316 | 358 | 4.01e-11 | 60.8 |
Msa1238990 | AT2G46495.2 | 55.814 | 43 | 19 | 0 | 89 | 131 | 292 | 334 | 4.57e-11 | 60.8 |
Msa1238990 | AT1G53010.1 | 33.945 | 109 | 66 | 2 | 32 | 134 | 67 | 175 | 4.86e-11 | 58.9 |
Msa1238990 | AT2G46495.1 | 55.814 | 43 | 19 | 0 | 89 | 131 | 320 | 362 | 5.94e-11 | 60.5 |
Msa1238990 | AT4G24015.1 | 53.488 | 43 | 20 | 0 | 89 | 131 | 105 | 147 | 7.85e-11 | 58.5 |
Msa1238990 | AT2G28920.1 | 28.972 | 107 | 73 | 1 | 28 | 131 | 29 | 135 | 9.55e-11 | 57.4 |
Find 30 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTTGGTTACTACAATTAT+TGG | 0.178264 | 8_2:+20001804 | Msa1238990:CDS |
GTTACTACAATTATTGGATT+TGG | 0.246283 | 8_2:+20001810 | Msa1238990:CDS |
GATGAGTTCAAGTAACAATT+TGG | 0.262569 | 8_2:+20001788 | Msa1238990:CDS |
GGGTCATTACCATGATATTC+TGG | 0.303976 | 8_2:-20002349 | None:intergenic |
AAATTTACCCGTTCAATATC+TGG | 0.310230 | 8_2:-20001936 | None:intergenic |
TACAGGTGTGTAATATGTTT+AGG | 0.346782 | 8_2:+20003332 | Msa1238990:intron |
TGAAAAGTGTGTCCACAATA+AGG | 0.364822 | 8_2:-20003389 | None:intergenic |
GCAGCAACAAATGCAGGTTC+AGG | 0.381451 | 8_2:-20002370 | None:intergenic |
ATCTTTCTTGCATTGATATG+TGG | 0.409101 | 8_2:+20003411 | Msa1238990:CDS |
ATCACGTACTATATATGAAA+TGG | 0.409592 | 8_2:+20001905 | Msa1238990:CDS |
CTCATCAAGAGATTGTCTTA+TGG | 0.419558 | 8_2:-20003519 | None:intergenic |
TTTGTGGAAGATTTAGAGAA+AGG | 0.422289 | 8_2:+20001874 | Msa1238990:CDS |
GAAGTTGATGATATAGAAGT+AGG | 0.476212 | 8_2:+20003606 | Msa1238990:exon |
GGGATTGCAGCAACAAATGC+AGG | 0.491563 | 8_2:-20002376 | None:intergenic |
TACTTTACATTTCAATCAAG+AGG | 0.498877 | 8_2:+20002399 | Msa1238990:CDS |
TCTTGATTGAAATGTAAAGT+AGG | 0.503985 | 8_2:-20002397 | None:intergenic |
ATCAAGACCAGATATTGAAC+GGG | 0.505726 | 8_2:+20001929 | Msa1238990:CDS |
TGTAATGTCAAACGACATAC+AGG | 0.509118 | 8_2:-20003455 | None:intergenic |
TGTCTTATGGTGAATGTCAC+AGG | 0.511603 | 8_2:-20003506 | None:intergenic |
CTTGATTGAAATGTAAAGTA+GGG | 0.516939 | 8_2:-20002396 | None:intergenic |
CAGCAACAAATGCAGGTTCA+GGG | 0.527717 | 8_2:-20002369 | None:intergenic |
GTATGTACAAGATTAATTTG+TGG | 0.546575 | 8_2:+20001858 | Msa1238990:CDS |
ACATGATAGCCAGAATATCA+TGG | 0.564569 | 8_2:+20002340 | Msa1238990:intron |
GATGAGTCTAATACTTCAGA+AGG | 0.576330 | 8_2:+20003536 | Msa1238990:CDS |
AATCAAGACCAGATATTGAA+CGG | 0.579390 | 8_2:+20001928 | Msa1238990:CDS |
TTGCGCATAATACCTTATTG+TGG | 0.599434 | 8_2:+20003377 | Msa1238990:CDS |
AGATTTAGAGAAAGGCATGT+GGG | 0.648166 | 8_2:+20001882 | Msa1238990:CDS |
CAAACGACATACAGGACATG+TGG | 0.652651 | 8_2:-20003447 | None:intergenic |
AAGATTTAGAGAAAGGCATG+TGG | 0.684425 | 8_2:+20001881 | Msa1238990:CDS |
TGTACACTGAAGATGACTGA+AGG | 0.704247 | 8_2:-20002422 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTTTTAAAAAAAAAAAA+TGG | - | chr8_2:20002510-20002529 | None:intergenic | 0.0% |
!!! | TAATTTTTAAAAAAAAAAAA+TGG | - | chr8_2:20002510-20002529 | None:intergenic | 0.0% |
!! | AAGAAATATTATATATTAAG+AGG | - | chr8_2:20002192-20002211 | None:intergenic | 10.0% |
!! | GTAAAAAAAAAAAAAATGTT+TGG | + | chr8_2:20002597-20002616 | Msa1238990:intron | 10.0% |
!!! | TTTTCTAAAAAAAATCTAAT+AGG | + | chr8_2:20003221-20003240 | Msa1238990:intron | 10.0% |
!! | ATAAAAAAAATAGCTAAATT+TGG | - | chr8_2:20003262-20003281 | None:intergenic | 10.0% |
!! | AAGAAATATTATATATTAAG+AGG | - | chr8_2:20002192-20002211 | None:intergenic | 10.0% |
!! | GTAAAAAAAAAAAAAATGTT+TGG | + | chr8_2:20002597-20002616 | Msa1238990:intron | 10.0% |
!!! | TTTTCTAAAAAAAATCTAAT+AGG | + | chr8_2:20003221-20003240 | Msa1238990:intron | 10.0% |
!! | ATAAAAAAAATAGCTAAATT+TGG | - | chr8_2:20003262-20003281 | None:intergenic | 10.0% |
!!! | CAAATTTTTTTTGATTTTTC+TGG | + | chr8_2:20002079-20002098 | Msa1238990:intron | 15.0% |
!!! | AATAAAATCTTATTTGAAAC+AGG | + | chr8_2:20002538-20002557 | Msa1238990:intron | 15.0% |
!!! | ATAGATTAGTTAAAAAAGTA+TGG | - | chr8_2:20002890-20002909 | None:intergenic | 15.0% |
!!! | ATTTAGAAAAGAACAAATTT+TGG | - | chr8_2:20003298-20003317 | None:intergenic | 15.0% |
!!! | TTCTTTTCTAAATTTCATTT+TGG | + | chr8_2:20003305-20003324 | Msa1238990:intron | 15.0% |
!!! | CAAATTTTTTTTGATTTTTC+TGG | + | chr8_2:20002079-20002098 | Msa1238990:intron | 15.0% |
!!! | AATAAAATCTTATTTGAAAC+AGG | + | chr8_2:20002538-20002557 | Msa1238990:intron | 15.0% |
!!! | ATAGATTAGTTAAAAAAGTA+TGG | - | chr8_2:20002890-20002909 | None:intergenic | 15.0% |
!!! | ATTTAGAAAAGAACAAATTT+TGG | - | chr8_2:20003298-20003317 | None:intergenic | 15.0% |
!!! | TTCTTTTCTAAATTTCATTT+TGG | + | chr8_2:20003305-20003324 | Msa1238990:intron | 15.0% |
!!! | GTTTTTTGTTCTAAAAAGAT+TGG | + | chr8_2:20001733-20001752 | Msa1238990:five_prime_UTR | 20.0% |
!! | AATTTGGTTACTACAATTAT+TGG | + | chr8_2:20001804-20001823 | Msa1238990:CDS | 20.0% |
!!! | AAAAAAAATGGCTTTTATGA+GGG | - | chr8_2:20002498-20002517 | None:intergenic | 20.0% |
!!! | AAAAAAAAATGGCTTTTATG+AGG | - | chr8_2:20002499-20002518 | None:intergenic | 20.0% |
!!! | GTAATTTGTTTGTAATTTTG+TGG | - | chr8_2:20002790-20002809 | None:intergenic | 20.0% |
!! | TAATCTAATAAGACAAAGTT+AGG | + | chr8_2:20003151-20003170 | Msa1238990:intron | 20.0% |
!!! | AATTTCATTTTGGTTTTTAC+AGG | + | chr8_2:20003315-20003334 | Msa1238990:intron | 20.0% |
!!! | GTTTTTTGTTCTAAAAAGAT+TGG | + | chr8_2:20001733-20001752 | Msa1238990:five_prime_UTR | 20.0% |
!! | AATTTGGTTACTACAATTAT+TGG | + | chr8_2:20001804-20001823 | Msa1238990:CDS | 20.0% |
!!! | AAAAAAAATGGCTTTTATGA+GGG | - | chr8_2:20002498-20002517 | None:intergenic | 20.0% |
!!! | AAAAAAAAATGGCTTTTATG+AGG | - | chr8_2:20002499-20002518 | None:intergenic | 20.0% |
!!! | GTAATTTGTTTGTAATTTTG+TGG | - | chr8_2:20002790-20002809 | None:intergenic | 20.0% |
!! | TAATCTAATAAGACAAAGTT+AGG | + | chr8_2:20003151-20003170 | Msa1238990:intron | 20.0% |
!!! | AATTTCATTTTGGTTTTTAC+AGG | + | chr8_2:20003315-20003334 | Msa1238990:intron | 20.0% |
! | GTTACTACAATTATTGGATT+TGG | + | chr8_2:20001810-20001829 | Msa1238990:CDS | 25.0% |
!! | GTATGTACAAGATTAATTTG+TGG | + | chr8_2:20001858-20001877 | Msa1238990:CDS | 25.0% |
! | ATCACGTACTATATATGAAA+TGG | + | chr8_2:20001905-20001924 | Msa1238990:CDS | 25.0% |
!!! | TTTTGTTGTTGTTTATGTCA+TGG | + | chr8_2:20002268-20002287 | Msa1238990:intron | 25.0% |
! | ATGGTGTAAAATGTTTAAGT+TGG | + | chr8_2:20002287-20002306 | Msa1238990:intron | 25.0% |
!!! | TGTAAAATGTTTAAGTTGGA+TGG | + | chr8_2:20002291-20002310 | Msa1238990:intron | 25.0% |
! | CTTGATTGAAATGTAAAGTA+GGG | - | chr8_2:20002399-20002418 | None:intergenic | 25.0% |
! | TCTTGATTGAAATGTAAAGT+AGG | - | chr8_2:20002400-20002419 | None:intergenic | 25.0% |
! | TACTTTACATTTCAATCAAG+AGG | + | chr8_2:20002399-20002418 | Msa1238990:CDS | 25.0% |
!!! | TTTGGAGTAAACAATCATTT+TGG | + | chr8_2:20002615-20002634 | Msa1238990:intron | 25.0% |
!!! | ATTGGACTTGTATTTTGAAA+CGG | - | chr8_2:20002831-20002850 | None:intergenic | 25.0% |
! | TGTTGAATTTAGATAGGATT+TGG | - | chr8_2:20003120-20003139 | None:intergenic | 25.0% |
! | GTTACTACAATTATTGGATT+TGG | + | chr8_2:20001810-20001829 | Msa1238990:CDS | 25.0% |
!! | GTATGTACAAGATTAATTTG+TGG | + | chr8_2:20001858-20001877 | Msa1238990:CDS | 25.0% |
! | ATCACGTACTATATATGAAA+TGG | + | chr8_2:20001905-20001924 | Msa1238990:CDS | 25.0% |
!!! | TTTTGTTGTTGTTTATGTCA+TGG | + | chr8_2:20002268-20002287 | Msa1238990:intron | 25.0% |
! | ATGGTGTAAAATGTTTAAGT+TGG | + | chr8_2:20002287-20002306 | Msa1238990:intron | 25.0% |
!!! | TGTAAAATGTTTAAGTTGGA+TGG | + | chr8_2:20002291-20002310 | Msa1238990:intron | 25.0% |
! | CTTGATTGAAATGTAAAGTA+GGG | - | chr8_2:20002399-20002418 | None:intergenic | 25.0% |
! | TCTTGATTGAAATGTAAAGT+AGG | - | chr8_2:20002400-20002419 | None:intergenic | 25.0% |
! | TACTTTACATTTCAATCAAG+AGG | + | chr8_2:20002399-20002418 | Msa1238990:CDS | 25.0% |
!!! | TTTGGAGTAAACAATCATTT+TGG | + | chr8_2:20002615-20002634 | Msa1238990:intron | 25.0% |
!!! | ATTGGACTTGTATTTTGAAA+CGG | - | chr8_2:20002831-20002850 | None:intergenic | 25.0% |
! | TGTTGAATTTAGATAGGATT+TGG | - | chr8_2:20003120-20003139 | None:intergenic | 25.0% |
!!! | AAAAGATTGGTTTTGTGAAG+TGG | + | chr8_2:20001746-20001765 | Msa1238990:five_prime_UTR | 30.0% |
!!! | AAAGATTGGTTTTGTGAAGT+GGG | + | chr8_2:20001747-20001766 | Msa1238990:five_prime_UTR | 30.0% |
GATGAGTTCAAGTAACAATT+TGG | + | chr8_2:20001788-20001807 | Msa1238990:CDS | 30.0% | |
TTTGTGGAAGATTTAGAGAA+AGG | + | chr8_2:20001874-20001893 | Msa1238990:CDS | 30.0% | |
AATCAAGACCAGATATTGAA+CGG | + | chr8_2:20001928-20001947 | Msa1238990:CDS | 30.0% | |
AAATTTACCCGTTCAATATC+TGG | - | chr8_2:20001939-20001958 | None:intergenic | 30.0% | |
TTTGAACTTAGCAATGTTTG+AGG | + | chr8_2:20002118-20002137 | Msa1238990:intron | 30.0% | |
TTAGCAATGTTTGAGGAAAA+AGG | + | chr8_2:20002125-20002144 | Msa1238990:intron | 30.0% | |
TAGCAATGTTTGAGGAAAAA+GGG | + | chr8_2:20002126-20002145 | Msa1238990:intron | 30.0% | |
GTGATGCTTGAGTATTAATT+AGG | + | chr8_2:20002229-20002248 | Msa1238990:intron | 30.0% | |
!!! | GTAAACAATCATTTTGGTTC+TGG | + | chr8_2:20002621-20002640 | Msa1238990:intron | 30.0% |
CAAATGAAAGATACATTTCG+AGG | - | chr8_2:20002757-20002776 | None:intergenic | 30.0% | |
!! | CTTGGACATGTATTTTGAAA+CGG | + | chr8_2:20003053-20003072 | Msa1238990:intron | 30.0% |
TGAATTTAGATAGGATTTGG+AGG | - | chr8_2:20003117-20003136 | None:intergenic | 30.0% | |
TCCTATCTAAATTCAACACA+TGG | + | chr8_2:20003122-20003141 | Msa1238990:intron | 30.0% | |
TCCATGTGTTGAATTTAGAT+AGG | - | chr8_2:20003126-20003145 | None:intergenic | 30.0% | |
TACAGGTGTGTAATATGTTT+AGG | + | chr8_2:20003332-20003351 | Msa1238990:intron | 30.0% | |
! | ATCTTTCTTGCATTGATATG+TGG | + | chr8_2:20003411-20003430 | Msa1238990:CDS | 30.0% |
!! | GAAGTTGATGATATAGAAGT+AGG | + | chr8_2:20003606-20003625 | Msa1238990:exon | 30.0% |
!!! | AAAAGATTGGTTTTGTGAAG+TGG | + | chr8_2:20001746-20001765 | Msa1238990:five_prime_UTR | 30.0% |
!!! | AAAGATTGGTTTTGTGAAGT+GGG | + | chr8_2:20001747-20001766 | Msa1238990:five_prime_UTR | 30.0% |
GATGAGTTCAAGTAACAATT+TGG | + | chr8_2:20001788-20001807 | Msa1238990:CDS | 30.0% | |
TTTGTGGAAGATTTAGAGAA+AGG | + | chr8_2:20001874-20001893 | Msa1238990:CDS | 30.0% | |
AATCAAGACCAGATATTGAA+CGG | + | chr8_2:20001928-20001947 | Msa1238990:CDS | 30.0% | |
AAATTTACCCGTTCAATATC+TGG | - | chr8_2:20001939-20001958 | None:intergenic | 30.0% | |
TTTGAACTTAGCAATGTTTG+AGG | + | chr8_2:20002118-20002137 | Msa1238990:intron | 30.0% | |
TTAGCAATGTTTGAGGAAAA+AGG | + | chr8_2:20002125-20002144 | Msa1238990:intron | 30.0% | |
TAGCAATGTTTGAGGAAAAA+GGG | + | chr8_2:20002126-20002145 | Msa1238990:intron | 30.0% | |
GTGATGCTTGAGTATTAATT+AGG | + | chr8_2:20002229-20002248 | Msa1238990:intron | 30.0% | |
!!! | GTAAACAATCATTTTGGTTC+TGG | + | chr8_2:20002621-20002640 | Msa1238990:intron | 30.0% |
CAAATGAAAGATACATTTCG+AGG | - | chr8_2:20002757-20002776 | None:intergenic | 30.0% | |
!! | CTTGGACATGTATTTTGAAA+CGG | + | chr8_2:20003053-20003072 | Msa1238990:intron | 30.0% |
TGAATTTAGATAGGATTTGG+AGG | - | chr8_2:20003117-20003136 | None:intergenic | 30.0% | |
TCCTATCTAAATTCAACACA+TGG | + | chr8_2:20003122-20003141 | Msa1238990:intron | 30.0% | |
TCCATGTGTTGAATTTAGAT+AGG | - | chr8_2:20003126-20003145 | None:intergenic | 30.0% | |
TACAGGTGTGTAATATGTTT+AGG | + | chr8_2:20003332-20003351 | Msa1238990:intron | 30.0% | |
! | ATCTTTCTTGCATTGATATG+TGG | + | chr8_2:20003411-20003430 | Msa1238990:CDS | 30.0% |
!! | GAAGTTGATGATATAGAAGT+AGG | + | chr8_2:20003606-20003625 | Msa1238990:exon | 30.0% |
!!! | AAGATTGGTTTTGTGAAGTG+GGG | + | chr8_2:20001748-20001767 | Msa1238990:five_prime_UTR | 35.0% |
! | AAGATTTAGAGAAAGGCATG+TGG | + | chr8_2:20001881-20001900 | Msa1238990:CDS | 35.0% |
! | AGATTTAGAGAAAGGCATGT+GGG | + | chr8_2:20001882-20001901 | Msa1238990:CDS | 35.0% |
ATCAAGACCAGATATTGAAC+GGG | + | chr8_2:20001929-20001948 | Msa1238990:CDS | 35.0% | |
ACATGATAGCCAGAATATCA+TGG | + | chr8_2:20002340-20002359 | Msa1238990:intron | 35.0% | |
!! | TTCTAGAACCAAACACACTA+AGG | - | chr8_2:20002709-20002728 | None:intergenic | 35.0% |
!!! | GACTTGTATTTTGAAACGGA+GGG | - | chr8_2:20002827-20002846 | None:intergenic | 35.0% |
ATAGTGCACACTGCAAAAAT+TGG | - | chr8_2:20002849-20002868 | None:intergenic | 35.0% | |
TAACGGTCAAAATTGTGCAT+TGG | + | chr8_2:20003012-20003031 | Msa1238990:intron | 35.0% | |
CATATGTGAAGTGATTGACT+TGG | + | chr8_2:20003035-20003054 | Msa1238990:intron | 35.0% | |
!!! | GACATGTATTTTGAAACGGA+GGG | + | chr8_2:20003057-20003076 | Msa1238990:intron | 35.0% |
TTGCGCATAATACCTTATTG+TGG | + | chr8_2:20003377-20003396 | Msa1238990:CDS | 35.0% | |
! | TGAAAAGTGTGTCCACAATA+AGG | - | chr8_2:20003392-20003411 | None:intergenic | 35.0% |
TGTAATGTCAAACGACATAC+AGG | - | chr8_2:20003458-20003477 | None:intergenic | 35.0% | |
CTCATCAAGAGATTGTCTTA+TGG | - | chr8_2:20003522-20003541 | None:intergenic | 35.0% | |
GATGAGTCTAATACTTCAGA+AGG | + | chr8_2:20003536-20003555 | Msa1238990:CDS | 35.0% | |
!!! | AAGATTGGTTTTGTGAAGTG+GGG | + | chr8_2:20001748-20001767 | Msa1238990:five_prime_UTR | 35.0% |
! | AAGATTTAGAGAAAGGCATG+TGG | + | chr8_2:20001881-20001900 | Msa1238990:CDS | 35.0% |
! | AGATTTAGAGAAAGGCATGT+GGG | + | chr8_2:20001882-20001901 | Msa1238990:CDS | 35.0% |
ATCAAGACCAGATATTGAAC+GGG | + | chr8_2:20001929-20001948 | Msa1238990:CDS | 35.0% | |
ACATGATAGCCAGAATATCA+TGG | + | chr8_2:20002340-20002359 | Msa1238990:intron | 35.0% | |
!! | TTCTAGAACCAAACACACTA+AGG | - | chr8_2:20002709-20002728 | None:intergenic | 35.0% |
!!! | GACTTGTATTTTGAAACGGA+GGG | - | chr8_2:20002827-20002846 | None:intergenic | 35.0% |
ATAGTGCACACTGCAAAAAT+TGG | - | chr8_2:20002849-20002868 | None:intergenic | 35.0% | |
TAACGGTCAAAATTGTGCAT+TGG | + | chr8_2:20003012-20003031 | Msa1238990:intron | 35.0% | |
CATATGTGAAGTGATTGACT+TGG | + | chr8_2:20003035-20003054 | Msa1238990:intron | 35.0% | |
!!! | GACATGTATTTTGAAACGGA+GGG | + | chr8_2:20003057-20003076 | Msa1238990:intron | 35.0% |
TTGCGCATAATACCTTATTG+TGG | + | chr8_2:20003377-20003396 | Msa1238990:CDS | 35.0% | |
! | TGAAAAGTGTGTCCACAATA+AGG | - | chr8_2:20003392-20003411 | None:intergenic | 35.0% |
TGTAATGTCAAACGACATAC+AGG | - | chr8_2:20003458-20003477 | None:intergenic | 35.0% | |
CTCATCAAGAGATTGTCTTA+TGG | - | chr8_2:20003522-20003541 | None:intergenic | 35.0% | |
GATGAGTCTAATACTTCAGA+AGG | + | chr8_2:20003536-20003555 | Msa1238990:CDS | 35.0% | |
!!! | AGATTGGTTTTGTGAAGTGG+GGG | + | chr8_2:20001749-20001768 | Msa1238990:five_prime_UTR | 40.0% |
GGGTCATTACCATGATATTC+TGG | - | chr8_2:20002352-20002371 | None:intergenic | 40.0% | |
TGTACACTGAAGATGACTGA+AGG | - | chr8_2:20002425-20002444 | None:intergenic | 40.0% | |
GAGTCTTTCCTTAGTGTGTT+TGG | + | chr8_2:20002698-20002717 | Msa1238990:intron | 40.0% | |
!!! | GGACTTGTATTTTGAAACGG+AGG | - | chr8_2:20002828-20002847 | None:intergenic | 40.0% |
!!! | GGACATGTATTTTGAAACGG+AGG | + | chr8_2:20003056-20003075 | Msa1238990:intron | 40.0% |
TGTCTTATGGTGAATGTCAC+AGG | - | chr8_2:20003509-20003528 | None:intergenic | 40.0% | |
!!! | AGATTGGTTTTGTGAAGTGG+GGG | + | chr8_2:20001749-20001768 | Msa1238990:five_prime_UTR | 40.0% |
GGGTCATTACCATGATATTC+TGG | - | chr8_2:20002352-20002371 | None:intergenic | 40.0% | |
TGTACACTGAAGATGACTGA+AGG | - | chr8_2:20002425-20002444 | None:intergenic | 40.0% | |
GAGTCTTTCCTTAGTGTGTT+TGG | + | chr8_2:20002698-20002717 | Msa1238990:intron | 40.0% | |
!!! | GGACTTGTATTTTGAAACGG+AGG | - | chr8_2:20002828-20002847 | None:intergenic | 40.0% |
!!! | GGACATGTATTTTGAAACGG+AGG | + | chr8_2:20003056-20003075 | Msa1238990:intron | 40.0% |
TGTCTTATGGTGAATGTCAC+AGG | - | chr8_2:20003509-20003528 | None:intergenic | 40.0% | |
!!! | GATTGGTTTTGTGAAGTGGG+GGG | + | chr8_2:20001750-20001769 | Msa1238990:five_prime_UTR | 45.0% |
CAGCAACAAATGCAGGTTCA+GGG | - | chr8_2:20002372-20002391 | None:intergenic | 45.0% | |
CAAACGACATACAGGACATG+TGG | - | chr8_2:20003450-20003469 | None:intergenic | 45.0% | |
!!! | GATTGGTTTTGTGAAGTGGG+GGG | + | chr8_2:20001750-20001769 | Msa1238990:five_prime_UTR | 45.0% |
CAGCAACAAATGCAGGTTCA+GGG | - | chr8_2:20002372-20002391 | None:intergenic | 45.0% | |
CAAACGACATACAGGACATG+TGG | - | chr8_2:20003450-20003469 | None:intergenic | 45.0% | |
!! | TATATAATTAAAGATATTAA+CGG | + | chr8_2:20002995-20003014 | Msa1238990:intron | 5.0% |
!! | TATATAATTAAAGATATTAA+CGG | + | chr8_2:20002995-20003014 | Msa1238990:intron | 5.0% |
!! | TTTTGTGAAGTGGGGGGTGT+GGG | + | chr8_2:20001756-20001775 | Msa1238990:five_prime_UTR | 50.0% |
GCAGCAACAAATGCAGGTTC+AGG | - | chr8_2:20002373-20002392 | None:intergenic | 50.0% | |
GGGATTGCAGCAACAAATGC+AGG | - | chr8_2:20002379-20002398 | None:intergenic | 50.0% | |
!! | TTTTGTGAAGTGGGGGGTGT+GGG | + | chr8_2:20001756-20001775 | Msa1238990:five_prime_UTR | 50.0% |
GCAGCAACAAATGCAGGTTC+AGG | - | chr8_2:20002373-20002392 | None:intergenic | 50.0% | |
GGGATTGCAGCAACAAATGC+AGG | - | chr8_2:20002379-20002398 | None:intergenic | 50.0% | |
! | GTTTTGTGAAGTGGGGGGTG+TGG | + | chr8_2:20001755-20001774 | Msa1238990:five_prime_UTR | 55.0% |
! | GTTTTGTGAAGTGGGGGGTG+TGG | + | chr8_2:20001755-20001774 | Msa1238990:five_prime_UTR | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 20001719 | 20003629 | 20001719 | ID=Msa1238990;Name=Msa1238990 |
chr8_2 | mRNA | 20001719 | 20003629 | 20001719 | ID=Msa1238990-mRNA-1;Parent=Msa1238990;Name=Msa1238990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=67|1|1|1|0|0|3|22|177 |
chr8_2 | exon | 20001719 | 20001950 | 20001719 | ID=Msa1238990-mRNA-1:exon:7329;Parent=Msa1238990-mRNA-1 |
chr8_2 | exon | 20002349 | 20002446 | 20002349 | ID=Msa1238990-mRNA-1:exon:7330;Parent=Msa1238990-mRNA-1 |
chr8_2 | exon | 20003337 | 20003629 | 20003337 | ID=Msa1238990-mRNA-1:exon:7331;Parent=Msa1238990-mRNA-1 |
chr8_2 | five_prime_UTR | 20001719 | 20001785 | 20001719 | ID=Msa1238990-mRNA-1:five_prime_utr;Parent=Msa1238990-mRNA-1 |
chr8_2 | CDS | 20001786 | 20001950 | 20001786 | ID=Msa1238990-mRNA-1:cds;Parent=Msa1238990-mRNA-1 |
chr8_2 | CDS | 20002349 | 20002446 | 20002349 | ID=Msa1238990-mRNA-1:cds;Parent=Msa1238990-mRNA-1 |
chr8_2 | CDS | 20003337 | 20003607 | 20003337 | ID=Msa1238990-mRNA-1:cds;Parent=Msa1238990-mRNA-1 |
chr8_2 | three_prime_UTR | 20003608 | 20003629 | 20003608 | ID=Msa1238990-mRNA-1:three_prime_utr;Parent=Msa1238990-mRNA-1 |
Gene Sequence |
Protein sequence |