AlfalfaGEDB | Msa1241390

M. sativa cultivar zhongmu-4 / Msa1241390

KEGG: K16732
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0005938 GO:0009506 GO:0009524 GO:0015630 GO:0030054 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0099568
PFAM: PF03999.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241390	XP_003628012.1	96.831	568	17	1	1	567	1	568	0.0	1124

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241390	sp\|Q9ZVJ3\|MA655_ARATH	54.779	544	241	2	18	561	12	550	0.0	579

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241390	G7LID1	96.831	568	17	1	1	567	1	568	0.0	1124

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1187200	Msa1241390	0.813346	2.681030e-51	-8.615850e-47
Msa1241390	Msa1282680	0.816845	4.483362e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241390	MtrunA17_Chr8g0354131	96.831	568	17	1	1	567	1	568	0.0	1124
Msa1241390	MtrunA17_Chr8g0345241	72.201	518	110	8	1	506	1	496	0.0	681
Msa1241390	MtrunA17_Chr5g0444881	50.265	565	264	7	14	567	15	573	3.82e-178	515
Msa1241390	MtrunA17_Chr1g0164981	41.368	585	306	8	13	564	15	595	1.01e-140	420
Msa1241390	MtrunA17_Chr6g0476051	42.281	570	292	9	11	564	13	561	1.11e-139	421
Msa1241390	MtrunA17_Chr1g0188201	42.430	568	306	5	8	564	9	566	2.85e-139	421
Msa1241390	MtrunA17_Chr3g0122591	39.606	558	310	7	13	545	18	573	5.34e-124	377
Msa1241390	MtrunA17_Chr7g0245851	40.485	536	303	6	13	546	367	888	3.75e-117	371
Msa1241390	MtrunA17_Chr5g0410361	80.000	75	13	1	246	320	21	93	3.79e-31	116

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241390	AT2G38720.1	54.779	544	241	2	18	561	12	550	0.0	579
Msa1241390	AT5G55230.3	50.977	563	259	7	14	564	15	572	1.64e-177	514
Msa1241390	AT5G55230.1	50.977	563	259	7	14	564	15	572	1.64e-177	514
Msa1241390	AT5G55230.2	48.480	592	259	8	14	564	15	601	3.02e-171	499
Msa1241390	AT4G26760.1	48.474	557	276	6	14	564	15	566	4.46e-171	497
Msa1241390	AT1G14690.1	39.206	579	322	6	11	564	14	587	9.17e-134	403
Msa1241390	AT1G14690.2	39.206	579	322	6	11	564	14	587	9.17e-134	403
Msa1241390	AT5G51600.1	43.199	544	298	4	13	548	14	554	7.09e-129	394
Msa1241390	AT2G01910.1	38.095	588	326	9	8	564	11	591	1.27e-127	387
Msa1241390	AT1G27920.1	39.852	542	313	7	13	543	18	557	1.59e-126	383

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Find 134 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAAAGCATGGGAGA+CGG	0.617295	8_2:-24949668	Msa1241390:CDS
AAAGAACCTGCAATTGACGG+AGG	0.701773	8_2:+24956437	None:intergenic
AAAGATGATTCTGTTTCAAG+GGG	0.618097	8_2:-24948445	Msa1241390:CDS
AAAGCAACAAAGGCTACAAA+AGG	0.520496	8_2:-24954217	Msa1241390:intron
AAAGCATGGATGACCAAATC+AGG	0.439242	8_2:-24952430	Msa1241390:CDS
AAAGCATGGGAGACGGAAAA+AGG	0.378834	8_2:-24949661	Msa1241390:CDS
AAATAGATATAGTGCAGTAA+AGG	0.460402	8_2:-24951125	Msa1241390:CDS
AACCCTAGAAAGAGAGAAAT+TGG	0.195434	8_2:+24956540	None:intergenic
AACTGAGAGAAGAAGAGAAG+CGG	0.568057	8_2:-24949499	Msa1241390:CDS
AAGAAGAGAAGCGGAAATCT+CGG	0.411004	8_2:-24949490	Msa1241390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGTGATGAATCTTACTCA+AGG	+	chr8_2:24948656-24948675	None:intergenic	30.0%
GTAAATCTTGAATAAGTACG+TGG	-	chr8_2:24948831-24948850	Msa1241390:intron	30.0%
ATTCTAATGTGTTCCTTTGT+TGG	+	chr8_2:24949231-24949250	None:intergenic	30.0%
ATCATTAATGCATTCACCAA+AGG	+	chr8_2:24949304-24949323	None:intergenic	30.0%
CCTTTCTGTAATAAATGTCA+AGG	+	chr8_2:24949418-24949437	None:intergenic	30.0%
CCTTGACATTTATTACAGAA+AGG	-	chr8_2:24949415-24949434	Msa1241390:intron	30.0%
AAACAGAATGCCAATGTTAA+TGG	+	chr8_2:24949558-24949577	None:intergenic	30.0%
AAGATATTCACCTAGATTAG+GGG	+	chr8_2:24949659-24949678	None:intergenic	30.0%
GAAGATATTCACCTAGATTA+GGG	+	chr8_2:24949660-24949679	None:intergenic	30.0%
TGAAGATATTCACCTAGATT+AGG	+	chr8_2:24949661-24949680	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	24948287	24956653	24948287	ID=Msa1241390;Name=Msa1241390
chr8_2	mRNA	24948287	24956653	24948287	ID=Msa1241390-mRNA-1;Parent=Msa1241390;Name=Msa1241390-mRNA-1;_AED=0.06;_eAED=0.08;_QI=141\|1\|0.81\|1\|1\|1\|11\|151\|567
chr8_2	exon	24948287	24948701	24948287	ID=Msa1241390-mRNA-1:exon:8822;Parent=Msa1241390-mRNA-1
chr8_2	exon	24949490	24949564	24949490	ID=Msa1241390-mRNA-1:exon:8821;Parent=Msa1241390-mRNA-1
chr8_2	exon	24949639	24949712	24949639	ID=Msa1241390-mRNA-1:exon:8820;Parent=Msa1241390-mRNA-1
chr8_2	exon	24951065	24951152	24951065	ID=Msa1241390-mRNA-1:exon:8819;Parent=Msa1241390-mRNA-1
chr8_2	exon	24952328	24952479	24952328	ID=Msa1241390-mRNA-1:exon:8818;Parent=Msa1241390-mRNA-1
chr8_2	exon	24953235	24953394	24953235	ID=Msa1241390-mRNA-1:exon:8817;Parent=Msa1241390-mRNA-1
chr8_2	exon	24953481	24953636	24953481	ID=Msa1241390-mRNA-1:exon:8816;Parent=Msa1241390-mRNA-1
chr8_2	exon	24954218	24954433	24954218	ID=Msa1241390-mRNA-1:exon:8815;Parent=Msa1241390-mRNA-1
chr8_2	exon	24954536	24954781	24954536	ID=Msa1241390-mRNA-1:exon:8814;Parent=Msa1241390-mRNA-1
chr8_2	exon	24955393	24955596	24955393	ID=Msa1241390-mRNA-1:exon:8813;Parent=Msa1241390-mRNA-1
chr8_2	exon	24956444	24956653	24956444	ID=Msa1241390-mRNA-1:exon:8812;Parent=Msa1241390-mRNA-1
chr8_2	five_prime_UTR	24956513	24956653	24956513	ID=Msa1241390-mRNA-1:five_prime_utr;Parent=Msa1241390-mRNA-1
chr8_2	CDS	24956444	24956512	24956444	ID=Msa1241390-mRNA-1:cds;Parent=Msa1241390-mRNA-1
chr8_2	CDS	24955393	24955596	24955393	ID=Msa1241390-mRNA-1:cds;Parent=Msa1241390-mRNA-1
chr8_2	CDS	24954536	24954781	24954536	ID=Msa1241390-mRNA-1:cds;Parent=Msa1241390-mRNA-1
chr8_2	CDS	24954218	24954433	24954218	ID=Msa1241390-mRNA-1:cds;Parent=Msa1241390-mRNA-1
chr8_2	CDS	24953481	24953636	24953481	ID=Msa1241390-mRNA-1:cds;Parent=Msa1241390-mRNA-1
chr8_2	CDS	24953235	24953394	24953235	ID=Msa1241390-mRNA-1:cds;Parent=Msa1241390-mRNA-1
chr8_2	CDS	24952328	24952479	24952328	ID=Msa1241390-mRNA-1:cds;Parent=Msa1241390-mRNA-1
chr8_2	CDS	24951065	24951152	24951065	ID=Msa1241390-mRNA-1:cds;Parent=Msa1241390-mRNA-1
chr8_2	CDS	24949639	24949712	24949639	ID=Msa1241390-mRNA-1:cds;Parent=Msa1241390-mRNA-1
chr8_2	CDS	24949490	24949564	24949490	ID=Msa1241390-mRNA-1:cds;Parent=Msa1241390-mRNA-1
chr8_2	CDS	24948438	24948701	24948438	ID=Msa1241390-mRNA-1:cds;Parent=Msa1241390-mRNA-1
chr8_2	three_prime_UTR	24948287	24948437	24948287	ID=Msa1241390-mRNA-1:three_prime_utr;Parent=Msa1241390-mRNA-1

Gene Sequence

>Msa1241390

ATGGCTTCCACACCTCCTTCCTTCTCTCCTTCTCGCACCACATGCGCTTCTCTCCTCCGTCAATTGCAGGTGATATGGGATGAGATTGGGGAGAGTGACACTGATAGAGACAATATGCTTCTTCAACTGGAGCAAGAGTGCCTTGACATTTATTACAGAAAGGTTGAGCAAACCAGAAAGCACAAAGCTGACTTAAATAAGTGGTTGGATGATGCTGAATCTGAAGTTGCTGATATTGCTTCTTCACTTGGGGATGATTGTGCGTTCTCACGGGGAAAGGGTACTCTGAAGCAGCAATTAGCCAACATCAGACCTGTCTTAGAGGACTTGAAGTCAAGGAAGGCTGAGAGAGTCGAGGAAATTTTAGAAATAAAGTCCCAAATATCACAGATATGTGCTGAAATAGCAGGCTGTGGACAGTCCAAAGGTGTCACGGATCAAGATGTTGATCAATGTGATCTGACCATGGAGAAATTGGGGGAACTTAAATCGCATCTTCATGAACTTCAAAATGAAAAGATCTTACGCCAGCAGAAAGTGAAAAGTCATATCAGTACTATCAGTGAGCTTTCAGCTGTAATGTCAATTGATATTTGGAAGACTTTAAATGACATCCACCCAAGCTTGAGCGGTTCATCAAATGGTGCACCACAATGCATTAGTAATGACACTCTTGCTAGATTAACTGGGGTTGTTCTTTCATTAAAGCAGGAAAAGCAACAAAGGCTACAAAAGGTACAAGAACTTGCCAATATTTTGGTACAGTTATGGGATCTTATGGAGATACCAATTGATGAGCAAAAGGCCTTTAGCCATGTTACTAGATTAATTTCAGCATCAGTTGATGAAGTGTCAATCCAAGGTGGCCTTTCTGCTGATGTCATTGAGCAGCTTGAGGTTGAAGTTCAGCGCTTAAATGTTTTGAAAGCCAGTAAGATGAAGGAATTAGTGTTCAAAAGACAGAATGAACTTGAAGAAATTTACAGAGGAGTTCACATGGATATGGATAGTGAAGCTGCTAGACAGACTCTGACCAGCCTCATAGAATCTGGTAATGTTGATATGTCTGAATTGCTTCAAAGCATGGATGACCAAATCAGGAAGGCCAAAGAGCAAGCTCTAAGCAGAAGAGATATCTTAGAAAGGGTGGAGAAATGGAAATTTGCTGCTGAGGAGGAAAAGTGGTTAGATGAATATGAAAGGGATCAAAATAGATATAGTGCAGTAAAGGGAGCACACAAAAATTTGAAGCGTGCGGAGAAAGCACGTATTCTTGTCAGCAAGATTCCATCTGTGGTTGAGAATTTGACTGCAAAAGTGAAAGCATGGGAGACGGAAAAAGGAATACCTTTCTTATACGAAAAGGTTCCGTTGTTGAATAGCTTGGATGAATACAACGTACAACGACAACTGAGAGAAGAAGAGAAGCGGAAATCTCGGGAGCAGAAGCGGCTTAATGAACAACTTGCTGTAGAGCAAGAAGCAATGTTTGGTTCAAGATCTGCAACAAAGAAGCCTCTGAACCAGAGTAGTCATGTTAACACTCTAGCTGGGACACCAAACGGGCGCCGAATGCATACTCCTTCAGGCCGTTATGGAACATCAGGTGCAAAGGATCGCAGAGAAAGTGGCAGAGTGAATAACATAATTCCAGTGAACTATGTTGCTCTTGCGAAAGATGATTCTGTTTCAAGGGGCAGTTAA

Protein sequence

>Msa1241390

MASTPPSFSPSRTTCASLLRQLQVIWDEIGESDTDRDNMLLQLEQECLDIYYRKVEQTRKHKADLNKWLDDAESEVADIASSLGDDCAFSRGKGTLKQQLANIRPVLEDLKSRKAERVEEILEIKSQISQICAEIAGCGQSKGVTDQDVDQCDLTMEKLGELKSHLHELQNEKILRQQKVKSHISTISELSAVMSIDIWKTLNDIHPSLSGSSNGAPQCISNDTLARLTGVVLSLKQEKQQRLQKVQELANILVQLWDLMEIPIDEQKAFSHVTRLISASVDEVSIQGGLSADVIEQLEVEVQRLNVLKASKMKELVFKRQNELEEIYRGVHMDMDSEAARQTLTSLIESGNVDMSELLQSMDDQIRKAKEQALSRRDILERVEKWKFAAEEEKWLDEYERDQNRYSAVKGAHKNLKRAEKARILVSKIPSVVENLTAKVKAWETEKGIPFLYEKVPLLNSLDEYNVQRQLREEEKRKSREQKRLNEQLAVEQEAMFGSRSATKKPLNQSSHVNTLAGTPNGRRMHTPSGRYGTSGAKDRRESGRVNNIIPVNYVALAKDDSVSRGS*